RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17938
(307 letters)
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C
3jyv_C*
Length = 240
Score = 164 bits (417), Expect = 9e-50
Identities = 76/108 (70%), Positives = 92/108 (85%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
K VADGVF AEL+EF TRELAE+GYSGVE+R TP +TE+II ATRTQ+VLG+ GRRI EL
Sbjct: 10 KLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINEL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T +VQKRFK+A G I LYAE+V RGL A+AQAES+++KL+ GLA+RR
Sbjct: 70 TLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRR 117
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 243
Score = 163 bits (413), Expect = 3e-49
Identities = 93/109 (85%), Positives = 104/109 (95%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRY 112
T+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRA 118
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
1s1h_C 3jyv_C*
Length = 227
Score = 161 bits (409), Expect = 1e-48
Identities = 90/109 (82%), Positives = 97/109 (88%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFV+DGVF AEL+E LTRELAEDGYSGVE+R TP RTEIII ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRY 112
TSVVQKRF F + +ELYAEKV RGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TSVVQKRFNFLENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRA 118
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_C
Length = 243
Score = 154 bits (391), Expect = 7e-46
Identities = 53/108 (49%), Positives = 78/108 (72%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADGVF AEL F ++ L + GY+G+E+R TP +TEI I AT+ Q V+G +G++ +EL
Sbjct: 13 KFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKEL 72
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T +QKRF ++D I+++AE + +GLCA AQ E++ YKL+ + VR
Sbjct: 73 TQFLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRL 120
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Length = 92
Score = 141 bits (356), Expect = 1e-42
Identities = 66/89 (74%), Positives = 76/89 (85%)
Query: 6 VADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTS 65
F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIRELT+
Sbjct: 3 SGSSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTA 62
Query: 66 VVQKRFKFADGAIELYAEKVATRGLCAIA 94
VVQKRF F +G++ELYAEKVATRG +
Sbjct: 63 VVQKRFGFPEGSVELYAEKVATRGSGPSS 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 2e-04
Identities = 37/258 (14%), Positives = 78/258 (30%), Gaps = 88/258 (34%)
Query: 97 ESLRYKLIGGLAVRRYPA---I--DAQYCSLLAQFGWSILILVV--------AVGTLHQC 143
S++ +L L + Y + + Q F S IL+ +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 144 PGCRE-----------LRIILTFLDSIVS-L-KEVCK--P---DIIIAL-------WEYF 178
+ ++L +LD L +EV P II W+ +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 179 HKRLNSNFVLKSMPFAYTLSCLNSN-------------------RSVLEVL--------- 210
K +N + + + +L+ L +L ++
Sbjct: 348 -KHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 211 -THVEQMISSTRIQKN-EENSYTLFLRMLGIYLL-------KYNHEQRIWNQVKGLKS-- 259
V ++ + ++K +E++ ++ IYL +Y + I + K+
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISI----PSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 260 ---PFTPAV-GYYYYYCG 273
P + Y+Y + G
Sbjct: 461 SDDLIPPYLDQYFYSHIG 478
Score = 41.0 bits (95), Expect = 4e-04
Identities = 44/303 (14%), Positives = 88/303 (29%), Gaps = 92/303 (30%)
Query: 11 FRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNV------LGDKGRRIRE-- 62
F D +++ + S EI II+ L K + +
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEID------HIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 63 LTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESL-------------RYKLIGGLAV 109
+ V++ +KF I+ + + I Q + L R + L +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY--LKL 140
Query: 110 RR--YPAIDAQYCSL--LAQFGWSILILVVAVGTLHQCPGCRELRIILTFLDSI--VSLK 163
R+ A+ + + G + + L V C ++ I ++LK
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDV----------CLSYKVQCKMDFKIFWLNLK 190
Query: 164 EVCKPDIIIALWEYFHKRLNSNFV-----------------------LKSMPF------- 193
P+ ++ + + +++ N+ LKS P+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 194 ----------AYTLSC----LNSNRSVLEVLT-HVEQMISSTRIQK--NEENSYTLFLRM 236
A+ LSC + V + L+ IS + +L L+
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 237 LGI 239
L
Sbjct: 311 LDC 313
Score = 31.4 bits (70), Expect = 0.43
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 28/126 (22%)
Query: 156 LDSIVSLKEVCKPDIIIALWEYFHKRLNSNFVLKSMPFAYTLSCLNSNRSVL--EVLTHV 213
+D + DI+ + F + V +S+L E + H+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP------------KSILSKEEIDHI 54
Query: 214 EQM---ISSTR-----IQKNEENSYTLFLRMLGIYLLKYNHEQRIWNQVKG-LKSPFTPA 264
+S T + +E F+ +L+ N++ + + +K + P
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE----VLRINYKF-LMSPIKTEQRQPSMMT 109
Query: 265 VGYYYY 270
Y
Sbjct: 110 RMYIEQ 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 8e-04
Identities = 45/212 (21%), Positives = 68/212 (32%), Gaps = 71/212 (33%)
Query: 6 VADGVF-RAELDEFLTRELAEDGYSGVEI-RFTPARTEIIIMATRTQNVLGDKGRRIREL 63
A V+ RA D G+S ++I P + I G+KG+RIRE
Sbjct: 1641 AAQDVWNRA--DNHFKDTY---GFSILDIVINNP--VNLTIHFG------GEKGKRIREN 1687
Query: 64 TS------------VVQKRFKFADGAIELYAEKVATRGLC--------AI-----AQAES 98
S +K FK + Y + + +GL A+ A E
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-SEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 99 LRYKLIGGLAVRRYPAIDA-----QYCSLLAQ---FGWSILILVVAV-GTLHQ--CP--- 144
L+ K GL A A +Y +L + L+ VV G Q P
Sbjct: 1747 LKSK---GLIPA--DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 145 ---------GCRELRIILTFLDSIVSLKEVCK 167
R+ +F +L+ V +
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQE--ALQYVVE 1831
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 218
Score = 32.5 bits (75), Expect = 0.11
Identities = 14/100 (14%), Positives = 41/100 (41%)
Query: 12 RAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRF 71
+ + + +G + +EI+ ++II + ++ ++ + + +L VQK
Sbjct: 44 KNYVQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGFPKLLIENRPQGVEDLKINVQKEL 103
Query: 72 KFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
+ + + ++A AE + +L ++ R+
Sbjct: 104 NCVNRKLNIAITRIAKPYGDPNILAEFIAGQLKSRVSFRK 143
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C*
1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C
1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C
1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Length = 239
Score = 32.6 bits (75), Expect = 0.11
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 17 EFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQK 69
L +EL G + V+I + + + V+G G RIR L + K
Sbjct: 41 GLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAK 93
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C*
2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C
3ofo_C 3r8o_C 4a2i_C
Length = 206
Score = 31.7 bits (73), Expect = 0.18
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 17 EFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFK 72
++LT+ELA+ S + I + I R V+G KG + +L VV
Sbjct: 40 QYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 95
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA
complex, ribonucleoprotein, ribosomal protein,
RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
{Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O
1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G*
3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 2qal_C*
1p6g_C 1p87_C 2aw7_C ...
Length = 233
Score = 31.8 bits (73), Expect = 0.19
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 17 EFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFK 72
++LT+ELA+ S + I + I R V+G KG + +L VV
Sbjct: 41 QYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 96
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.28
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 15/44 (34%)
Query: 55 DKGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAI-AQAE 97
+K + +++L + +++LYA+ A L AI A E
Sbjct: 18 EK-QALKKLQA-----------SLKLYADDSAP-AL-AIKATME 47
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 31.5 bits (72), Expect = 0.30
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 17/108 (15%)
Query: 10 VFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTS--VV 67
+ R + D+ L LA +G ++ +I + I ++ + V+
Sbjct: 99 LERDKFDKHL-AALAAK--AGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVI 155
Query: 68 QKRFKFADGA-------IELYAEKVATRGLCAIAQAESLRYKLIGGLA 108
ADG L + +A + + Q + +
Sbjct: 156 A-----ADGFESEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYT 198
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 31.7 bits (72), Expect = 0.33
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 10 VFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQK 69
V R D+ L E A GV++ + T+I T + + D RE+
Sbjct: 103 VPRGNFDKTLADEAAR---QGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREI------ 153
Query: 70 RFKF---ADGA 77
+F A G
Sbjct: 154 EARFIIDASGY 164
>1ssk_A Nucleocapsid protein; structural protein; NMR {Sars coronavirus}
SCOP: b.148.1.1
Length = 158
Score = 29.8 bits (66), Expect = 0.70
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 244 YNHEQRIWNQVKGLKSPFTPAVGYYYYYCG 273
Y R G +P +Y+YY G
Sbjct: 65 YRRATRRVRGGDGKMKELSPR--WYFYYLG 92
>2ofz_A Nucleocapsid protein; SARS coronavirus nucleocapsid RNA binding
N-terminal domain, N protein, SARS-ORF9A, viral protein;
1.17A {Sars coronavirus TOR2} PDB: 2og3_A
Length = 138
Score = 29.2 bits (65), Expect = 0.73
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 244 YNHEQRIWNQVKGLKSPFTPAVGYYYYYCG 273
Y R G +P +Y+YY G
Sbjct: 52 YRRATRRVRGGDGKMKELSPR--WYFYYLG 79
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring finger;
NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 26.0 bits (57), Expect = 3.5
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 139 TLHQCPGC 146
+LH CPGC
Sbjct: 51 SLHSCPGC 58
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics,
protein structure INI PSI, center for eukaryotic
structural genomics, CESG; 2.59A {Homo sapiens} SCOP:
c.103.1.1 PDB: 2q4q_A
Length = 122
Score = 26.8 bits (59), Expect = 4.5
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 12 RAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRI 60
++ L + G V + T A + N L +G R+
Sbjct: 74 ALKVPSSTVEYLKKHGI-DVRVLQTEQ-------AVKEYNALVAQGVRV 114
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 27.5 bits (61), Expect = 6.6
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 171 IIALWEYFHKRLNSNFVLKSMPFAYTLSCLNS 202
+ L + + +S + + F L +NS
Sbjct: 355 VFVLAQGLGVQPSSETAVAILRFCTALGYVNS 386
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease,
SH3-binding, thiol protease, UBL conjugation pathway,
structural genomics; 2.10A {Homo sapiens} SCOP:
a.118.23.1
Length = 144
Score = 26.7 bits (58), Expect = 7.7
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 202 SNRSVLEVLTHVEQMISSTRIQKNEENSYTLFLRMLGIYLLKYNHEQ 248
S +S + + + R+ ++EE +Y L+++ + +Y L
Sbjct: 34 STKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPD 80
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Length = 287
Score = 26.8 bits (60), Expect = 8.0
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 1 MSAKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGD 55
M + + ++ E + R R +++IM ++ + LGD
Sbjct: 51 MRVSVEIPVAGVNDFNSAFG-KVVEKYNAEWWFRPRTDRKKVVIMVSKFDHCLGD 104
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 27.2 bits (60), Expect = 8.7
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 12/71 (16%)
Query: 10 VFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQK 69
V R E D+ L E G+ + T++ + + +G +
Sbjct: 125 VKREEFDKLLLDEARS---RGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTV------ 175
Query: 70 RFKF---ADGA 77
F A G+
Sbjct: 176 ESDFVIDAGGS 186
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin
synthesis, ASB locus, structu genomics, PSI-2, protein
structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus
anthracis}
Length = 286
Score = 26.6 bits (59), Expect = 9.9
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 15 LDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNV---LGDKGRRIRELTSVVQKRF 71
+ + + E+G+ G+E+ T A+ + T+ L DK I ++
Sbjct: 17 FTDIV-QFAYENGFEGIELWGTHAQNLYMQEYETTERELNCLKDKTLEITMISD------ 69
Query: 72 KFADGAIELYAEKV--ATRGLCAIAQA 96
+ D ++ EK L +A
Sbjct: 70 -YLDISLSADFEKTIEKCEQLAILANW 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.423
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,786,286
Number of extensions: 286621
Number of successful extensions: 747
Number of sequences better than 10.0: 1
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 34
Length of query: 307
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 214
Effective length of database: 4,105,140
Effective search space: 878499960
Effective search space used: 878499960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.9 bits)