BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17939
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZIA5|COPB_CHICK Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1
Length = 953
Score = 115 bits (289), Expect = 7e-26, Method: Composition-based stats.
Identities = 54/72 (75%), Positives = 64/72 (88%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K+K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKLKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LLQ+
Sbjct: 86 PKTTPDGRLLQE 97
>sp|Q66HV4|COPB_DANRE Coatomer subunit beta OS=Danio rerio GN=copb1 PE=2 SV=1
Length = 953
Score = 114 bits (284), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/68 (79%), Positives = 61/68 (89%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+EKG+ K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIVPKTT
Sbjct: 30 LEKGEIKAKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTT 89
Query: 69 PDGKLLQD 76
PDGKLLQ+
Sbjct: 90 PDGKLLQE 97
>sp|P23514|COPB_RAT Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1
Length = 953
Score = 112 bits (281), Expect = 6e-25, Method: Composition-based stats.
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>sp|Q9JIF7|COPB_MOUSE Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1
Length = 953
Score = 112 bits (281), Expect = 6e-25, Method: Composition-based stats.
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>sp|Q5R922|COPB_PONAB Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1
Length = 953
Score = 112 bits (280), Expect = 6e-25, Method: Composition-based stats.
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>sp|P53618|COPB_HUMAN Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3
Length = 953
Score = 112 bits (280), Expect = 6e-25, Method: Composition-based stats.
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>sp|A0JN39|COPB_BOVIN Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=1 SV=1
Length = 953
Score = 112 bits (280), Expect = 7e-25, Method: Composition-based stats.
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>sp|D2SW95|COPB_PIG Coatomer subunit beta OS=Sus scrofa GN=COPB1 PE=2 SV=1
Length = 953
Score = 112 bits (280), Expect = 8e-25, Method: Composition-based stats.
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>sp|P45437|COPB_DROME Coatomer subunit beta OS=Drosophila melanogaster GN=betaCop PE=2
SV=2
Length = 964
Score = 110 bits (274), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/68 (72%), Positives = 61/68 (89%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+EKGDT +KIE LK+VI+++ NGER PG++M IIRFVLP+Q+H IKKLLLIFWEIVPKT+
Sbjct: 28 LEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTS 87
Query: 69 PDGKLLQD 76
DGKLLQ+
Sbjct: 88 ADGKLLQE 95
>sp|Q29G21|COPB_DROPS Coatomer subunit beta OS=Drosophila pseudoobscura pseudoobscura
GN=betaCop PE=3 SV=2
Length = 965
Score = 109 bits (273), Expect = 5e-24, Method: Composition-based stats.
Identities = 51/68 (75%), Positives = 60/68 (88%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+EKGDT KIE LKKVI+++ NGER PG++M IIRFVLP+QDH IKKLLLIFWEIVPKT+
Sbjct: 27 LEKGDTNHKIETLKKVIKLLLNGERYPGLIMTIIRFVLPVQDHTIKKLLLIFWEIVPKTS 86
Query: 69 PDGKLLQD 76
DGKLLQ+
Sbjct: 87 GDGKLLQE 94
>sp|Q9NFU6|COPB_TRYBB Coatomer subunit beta OS=Trypanosoma brucei brucei PE=3 SV=1
Length = 982
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+EKGD K + AL+ +I+M NGE ++M +I+F+ P+ DH IKKL+L FWE+V KT
Sbjct: 29 LEKGDMKARASALEALIRMHLNGEPQNHMIMTVIKFITPLDDHYIKKLVLYFWEVVDKTD 88
Query: 69 PDGKLLQD 76
GKLL +
Sbjct: 89 ASGKLLSE 96
>sp|Q23924|COPB_DICDI Coatomer subunit beta OS=Dictyostelium discoideum GN=copb PE=2
SV=2
Length = 912
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 43/61 (70%)
Query: 7 HHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPK 66
+ E G T+ KIE LKKVI NGE +P +LM II +V+P DH IKKLLLI+WE++ K
Sbjct: 33 QNFEHGTTEQKIETLKKVILYTINGEPIPQLLMPIILYVMPSNDHTIKKLLLIYWEVIEK 92
Query: 67 T 67
T
Sbjct: 93 T 93
>sp|Q9UUF7|COPB_SCHPO Coatomer subunit beta OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sec26 PE=3 SV=1
Length = 940
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+E + +KI A+K +++++ NG+ LP ILM +IRFV+P ++ +KKLL +WE+ PK
Sbjct: 24 LESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMPSRNKELKKLLYYYWEVCPKYN 83
Query: 69 PDGKLLQD 76
DG + Q+
Sbjct: 84 NDGTMKQE 91
>sp|P41810|COPB_YEAST Coatomer subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC26 PE=1 SV=2
Length = 973
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+EKG + KI+ +K ++ + G +P +LM IIRFV+P ++ +KKLL +WEIVPK
Sbjct: 32 LEKGSDEQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVPKLA 91
Query: 69 PDGKL 73
DGKL
Sbjct: 92 EDGKL 96
>sp|Q53PC7|COPB1_ORYSJ Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica
GN=Os11g0174000 PE=2 SV=1
Length = 953
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 1 MAPCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIF 60
MA + +E D K++A+K+ I ++ NGE LP + + ++R+VLP +DH I+KLLL++
Sbjct: 18 MANEIKADLEGSDVAAKVDAMKRAIMLLLNGETLPHLFITVVRYVLPSEDHTIQKLLLLY 77
Query: 61 WEIVPK-TTPDGKLLQD 76
EIV K GK+L +
Sbjct: 78 LEIVDKRDVASGKVLPE 94
>sp|Q0JNK5|COPB2_ORYSJ Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica
GN=Os01g0281400 PE=3 SV=1
Length = 950
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 49/76 (64%)
Query: 1 MAPCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIF 60
MA + +E D K++A+K+ + ++ NGE LP + + ++R+VLP +DH I+KLLL++
Sbjct: 18 MAGEIKADLEGSDVAAKVDAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLY 77
Query: 61 WEIVPKTTPDGKLLQD 76
EI+ K G+ L +
Sbjct: 78 LEIIDKRDAAGRGLPE 93
>sp|Q6FM46|COPB_CANGA Coatomer subunit beta OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC26 PE=3
SV=1
Length = 972
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+EKG + KIEA+K+++ + G LP +LM IIRFV+P ++ +KKLL +WEIVPK
Sbjct: 32 LEKGSDETKIEAMKEILVTMLEGNPLPEMLMHIIRFVMPSKNKKLKKLLYFYWEIVPKLD 91
Query: 69 PDGKL 73
DGKL
Sbjct: 92 QDGKL 96
>sp|Q9SV20|COPB2_ARATH Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2
SV=2
Length = 948
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 50/72 (69%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ +E D + K++A+KK I ++ NGE +P + + IIR+VLP +DH I+KLLL++ E++
Sbjct: 22 IKEALEGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELI 81
Query: 65 PKTTPDGKLLQD 76
KT GK+L +
Sbjct: 82 EKTDSKGKVLPE 93
>sp|Q9SV21|COPB1_ARATH Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1
SV=2
Length = 948
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 50/72 (69%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ +E D + K++A+KK I ++ NGE +P + + IIR+VLP +DH I+KLLL++ E++
Sbjct: 22 IKEALEGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELI 81
Query: 65 PKTTPDGKLLQD 76
KT GK+L +
Sbjct: 82 EKTDSKGKVLPE 93
>sp|Q9U4N3|COPB_TOXGO Coatomer subunit beta OS=Toxoplasma gondii PE=2 SV=2
Length = 1103
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
IE + K E ++ +I + GE +LM +IR+ +P +D +KKL ++ EIV K
Sbjct: 28 IESPNEATKAEGMQDLIIGMTQGEAYTRLLMTVIRYAMPSKDKRVKKLTQLYLEIVGKCR 87
Query: 69 PDGKLLQD 76
PDG L ++
Sbjct: 88 PDGSLKEE 95
>sp|Q65RF1|FOLD_MANSM Bifunctional protein FolD OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=folD PE=3 SV=2
Length = 283
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 15 KIKIEALKKVIQMIANGERLPGILMIII 42
K+K E +K+ Q +A G+R PG+ +I++
Sbjct: 14 KVKTEVGQKIEQYVAQGKRAPGLAVILV 41
>sp|P57557|FOLD_BUCAI Bifunctional protein FolD OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=folD PE=3 SV=1
Length = 285
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 24 VIQMIANGERLPGILMIIIRFVLPMQDHMIKK 55
V Q NGER+PG+ MI++ +P Q ++ KK
Sbjct: 23 VKQRKKNGERIPGLAMILVGNHIPSQIYVNKK 54
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.143 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,954,792
Number of Sequences: 539616
Number of extensions: 929864
Number of successful extensions: 2488
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2465
Number of HSP's gapped (non-prelim): 26
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)