Query psy17939
Match_columns 81
No_of_seqs 106 out of 220
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 18:11:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tjz_B Coatomer subunit gamma; 99.4 6.4E-13 2.2E-17 101.2 5.9 72 3-81 29-106 (355)
2 2vgl_A Adaptor protein complex 99.2 1.1E-11 3.8E-16 98.0 7.0 67 3-70 38-107 (621)
3 2vgl_B AP-2 complex subunit be 99.2 6.4E-12 2.2E-16 97.5 5.4 67 2-69 15-81 (591)
4 1w63_A Adapter-related protein 99.2 2.1E-11 7.3E-16 95.6 5.9 66 3-69 37-102 (618)
5 3gs3_A Symplekin, LD45768P; he 89.5 1.4 4.7E-05 31.9 7.0 57 6-64 21-81 (257)
6 3o2t_A Symplekin; heat repeat, 71.2 11 0.00037 28.9 6.2 50 14-64 39-90 (386)
7 3ul1_B Importin subunit alpha- 57.3 30 0.001 25.8 6.3 54 2-55 59-119 (510)
8 3tpo_A Importin subunit alpha- 53.5 42 0.0014 25.0 6.5 54 3-56 79-139 (529)
9 2rnn_A E3 SUMO-protein ligase 49.1 16 0.00056 23.8 3.2 26 12-37 79-104 (114)
10 3b2a_A TON_1937, putative unch 44.1 25 0.00087 26.0 3.9 62 5-67 155-219 (265)
11 1ooh_A Odorant binding protein 37.8 58 0.002 19.3 4.4 62 17-78 8-71 (126)
12 1q1v_A DEK protein; winged-hel 33.2 50 0.0017 19.3 3.4 30 3-32 36-69 (70)
13 3ra3_A P1C; coiled coil domain 30.6 29 0.00098 17.2 1.6 20 9-28 7-26 (28)
14 2vkj_A TM1634; membrane protei 30.5 21 0.0007 23.0 1.4 19 48-66 83-101 (106)
15 1c3y_A THP12 carrier protein; 29.9 32 0.0011 20.0 2.1 40 38-78 25-64 (108)
16 1wa5_B Importin alpha subunit; 29.0 1.3E+02 0.0046 21.9 5.8 62 3-65 90-159 (530)
17 1w63_A Adapter-related protein 27.6 1.8E+02 0.0062 22.3 6.5 56 11-66 522-577 (618)
18 2r2q_A Gamma-aminobutyric acid 27.4 18 0.00062 22.7 0.7 48 18-73 56-104 (110)
19 3s0a_A OBP14; all helical prot 26.8 1.1E+02 0.0036 18.5 4.3 33 46-78 36-68 (119)
20 2qk1_A Protein STU2; STU2P, XM 26.4 1.5E+02 0.0052 20.0 6.3 55 3-58 149-212 (249)
21 2b6c_A Hypothetical protein EF 25.8 48 0.0016 22.5 2.7 40 4-46 2-41 (220)
22 1eo6_A GATE-16, golgi-associat 22.6 28 0.00096 22.1 0.9 48 18-73 57-105 (117)
23 3jxy_A Alkylpurine DNA glycosy 22.4 53 0.0018 22.4 2.4 60 2-64 6-88 (232)
24 1pca_A Procarboxypeptidase A P 21.3 20 0.00068 26.9 0.0 39 35-73 171-212 (403)
25 3prt_A Carboxypeptidase T; hyd 21.0 9.4 0.00032 27.6 -1.8 37 36-72 77-116 (323)
No 1
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.36 E-value=6.4e-13 Score=101.19 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=55.8
Q ss_pred hHHHhhh-hcCChHHHH-HHHHHHHHHHHcCCCCCcchHHHHHh----hccCCChhhHHHHHHHHHhccCCCCCCCcccc
Q psy17939 3 PCVSHHI-EKGDTKIKI-EALKKVIQMIANGERLPGILMIIIRF----VLPMQDHMIKKLLLIFWEIVPKTTPDGKLLQD 76 (81)
Q Consensus 3 ~elk~~L-es~~~~~K~-ealKkiI~~~~~G~~~~~L~m~VIr~----v~ps~n~~lKKLl~lY~e~~~k~~~dGkL~~E 76 (81)
+|.| .+ +++.+..|+ ++|+|+|.+|.+|+++++..++.+.| ++||+|+++|||+|+||+.+++. .+|
T Consensus 29 qe~r-~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~------~~e 101 (355)
T 3tjz_B 29 QEAR-VFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI------AED 101 (355)
T ss_dssp HHGG-GTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT------SSC
T ss_pred HHHH-HhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC------HHH
Confidence 4533 44 444565665 49999999999999987555544444 89999999999999999999987 468
Q ss_pred eeecC
Q psy17939 77 RCKTT 81 (81)
Q Consensus 77 miL~~ 81 (81)
+||+|
T Consensus 102 ~iLv~ 106 (355)
T 3tjz_B 102 VIIVT 106 (355)
T ss_dssp GGGGH
T ss_pred HHHHH
Confidence 88874
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.24 E-value=1.1e-11 Score=97.97 Aligned_cols=67 Identities=12% Similarity=0.118 Sum_probs=61.5
Q ss_pred hHHHhhhhc---CChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCCCCC
Q psy17939 3 PCVSHHIEK---GDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPD 70 (81)
Q Consensus 3 ~elk~~Les---~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~d 70 (81)
+|||+.|++ .+...|.++++|+|.++..|++++.+|++||+ +++|+|+++||++|+||..+.+.++|
T Consensus 38 ~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvk-l~~s~~~~~Krl~YL~l~~~~~~~~e 107 (621)
T 2vgl_A 38 ANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVN-LLSSNRYTEKQIGYLFISVLVNSNSE 107 (621)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHH-GGGCSCHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHH-HhcCCCHHHHHHHHHHHHHHccCCcH
Confidence 589999985 47889999999999999999999999999999 77799999999999999999887753
No 3
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.24 E-value=6.4e-12 Score=97.54 Aligned_cols=67 Identities=18% Similarity=0.324 Sum_probs=62.1
Q ss_pred hhHHHhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCCCC
Q psy17939 2 APCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTP 69 (81)
Q Consensus 2 ~~elk~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~ 69 (81)
.+|||+.|++++++.|.+|++|+|.+++.|++++.+|++|++ +++|+|.++||+.|+||..+.+.++
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~-l~~s~~~~~Krl~yl~l~~~~~~~~ 81 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN-CMQTDNLELKKLVYLYLMNYAKSQP 81 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHH-TTSSSCHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcccCc
Confidence 368999999999999999999999999999999999999998 7789999999999999999866543
No 4
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.18 E-value=2.1e-11 Score=95.56 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=61.6
Q ss_pred hHHHhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCCCC
Q psy17939 3 PCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTP 69 (81)
Q Consensus 3 ~elk~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~ 69 (81)
+|||+.|++++...|+++++|+|.++..|++++.+||+|||++. |+|+++||++|+|...+...++
T Consensus 37 ~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~~ 102 (618)
T 1w63_A 37 AAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDERQ 102 (618)
T ss_dssp HHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCCc
Confidence 58999999999999999999999999999999999999999877 9999999999999999876553
No 5
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=89.45 E-value=1.4 Score=31.88 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=42.0
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhcc---CCChhhHHHHHHHH-Hhc
Q psy17939 6 SHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLP---MQDHMIKKLLLIFW-EIV 64 (81)
Q Consensus 6 k~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~p---s~n~~lKKLl~lY~-e~~ 64 (81)
-+.-...++++|++.|+++=..+.+++ |++++.++..++| ..+.+++|.+-=|+ |.|
T Consensus 21 ln~A~~~~~~~kl~~L~qa~el~~~~d--p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~ 81 (257)
T 3gs3_A 21 CNELVIASPSTKCELLAKVQETVLGSC--AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC 81 (257)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHTTTT--GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHhhhcCcHHHHHHHHHHHHHHHccC--HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 333444345799999999999999886 4566666666655 78899999887777 444
No 6
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=71.17 E-value=11 Score=28.87 Aligned_cols=50 Identities=30% Similarity=0.372 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHcCCC--CCcchHHHHHhhccCCChhhHHHHHHHHHhc
Q psy17939 14 TKIKIEALKKVIQMIANGER--LPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64 (81)
Q Consensus 14 ~~~K~ealKkiI~~~~~G~~--~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~ 64 (81)
+++|++.|+++=..+++.++ ++++|..++-|.. .++.+++|.+-=|++-.
T Consensus 39 ~~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~-d~~~~vRk~~a~FieEa 90 (386)
T 3o2t_A 39 NDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQA-DKSIEVRKFVIGFIEEA 90 (386)
T ss_dssp STHHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGG-CSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHH
Confidence 46899999999998888665 4789999998766 77999999998888754
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=57.32 E-value=30 Score=25.80 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=39.6
Q ss_pred hhHHHhhhhcCChHHHHHHHHHHHHHHHcCCCCC-------cchHHHHHhhccCCChhhHH
Q psy17939 2 APCVSHHIEKGDTKIKIEALKKVIQMIANGERLP-------GILMIIIRFVLPMQDHMIKK 55 (81)
Q Consensus 2 ~~elk~~Les~~~~~K~ealKkiI~~~~~G~~~~-------~L~m~VIr~v~ps~n~~lKK 55 (81)
.+|+-+.|.|+|.+.+.+|.+.+=.+.+..++.| +.++..|++.-.+++.+++.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~ 119 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQF 119 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHH
Confidence 4688899999999999999987755555554432 46788888665566677765
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=53.51 E-value=42 Score=25.00 Aligned_cols=54 Identities=9% Similarity=0.168 Sum_probs=41.3
Q ss_pred hHHHhhhhcCChHHHHHHHHHHHHHHHcCCCC-------CcchHHHHHhhccCCChhhHHH
Q psy17939 3 PCVSHHIEKGDTKIKIEALKKVIQMIANGERL-------PGILMIIIRFVLPMQDHMIKKL 56 (81)
Q Consensus 3 ~elk~~Les~~~~~K~ealKkiI~~~~~G~~~-------~~L~m~VIr~v~ps~n~~lKKL 56 (81)
+++-+.+.|+|.+...+|++.+-.+.++..+. .+.++..|++.-.+++.+++.-
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~ 139 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFE 139 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHH
Confidence 57788899999999999998887666666543 3567888887766777777763
No 9
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=49.09 E-value=16 Score=23.76 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCcc
Q psy17939 12 GDTKIKIEALKKVIQMIANGERLPGI 37 (81)
Q Consensus 12 ~~~~~K~ealKkiI~~~~~G~~~~~L 37 (81)
..|..+..|++.+|....+|++.|..
T Consensus 79 ~~D~~rl~ai~~lI~~~~~g~plP~~ 104 (114)
T 2rnn_A 79 KSDPYRVQAVKFLIERIRKNEPLPVY 104 (114)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCCCH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCH
Confidence 36788999999999999999988753
No 10
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=44.09 E-value=25 Score=26.02 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=46.1
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHH---HHhhccCCChhhHHHHHHHHHhccCC
Q psy17939 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMII---IRFVLPMQDHMIKKLLLIFWEIVPKT 67 (81)
Q Consensus 5 lk~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~V---Ir~v~ps~n~~lKKLl~lY~e~~~k~ 67 (81)
|-..++|.|-+.|.-|++-+-.+-...+| ++++.+| |++.++|+|..+.+..+-=++.+-.+
T Consensus 155 l~sLl~Skd~~vK~agl~~L~eia~~S~D-~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 155 INELVVSPDLYTKVAGFCLFLNMLNSSAD-SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHGGGCSS-CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCChhHHHHHHHHHHHhhcccCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 44567899999999999887776554433 4455555 45678999999999988888887544
No 11
>1ooh_A Odorant binding protein LUSH; alcohol, transport protein; 1.25A {Drosophila melanogaster} SCOP: a.39.2.1 PDB: 3b6x_A 2gte_A* 1oof_A 1ooi_X 1t14_A 1oog_A* 3b7a_A 3b86_A* 3b87_A* 3b88_A* 2qdi_A*
Probab=37.79 E-value=58 Score=19.27 Aligned_cols=62 Identities=8% Similarity=-0.069 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCCCC-cchHHHHHhhccC-CChhhHHHHHHHHHhccCCCCCCCccccee
Q psy17939 17 KIEALKKVIQMIANGERLP-GILMIIIRFVLPM-QDHMIKKLLLIFWEIVPKTTPDGKLLQDRC 78 (81)
Q Consensus 17 K~ealKkiI~~~~~G~~~~-~L~m~VIr~v~ps-~n~~lKKLl~lY~e~~~k~~~dGkL~~Emi 78 (81)
..++++.+...-..-..++ +.+-.+-++-.|. .|.++|-.+.=+++-..-.|.+|++..+-+
T Consensus 8 ~~~~~~~~~~~C~~e~~v~~~~~~~~~~~~~~~~~d~~~kC~~~C~~~k~g~~d~~g~~~~~~~ 71 (126)
T 1ooh_A 8 FLTSLDMIRSGCAPKFKLKTEDLDRLRVGDFNFPPSQDLMCYTKCVSLMAGTVNKKGEFNAPKA 71 (126)
T ss_dssp HHHHHHHHHHTTGGGSCCCHHHHHHHHTTCCCSCCCHHHHHHHHHHHHHHTSBCTTCCBCHHHH
T ss_pred HHHHHHHHHHHhhcccCCCHHHHHHHHcCCCCCCCCCcCCcHHHHHHHHhCccCcCCCCCHHHH
Confidence 3344444444333332333 2333444444554 889999999999999988999999876543
No 12
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=33.21 E-value=50 Score=19.30 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=20.6
Q ss_pred hHHHhhhhc----CChHHHHHHHHHHHHHHHcCC
Q psy17939 3 PCVSHHIEK----GDTKIKIEALKKVIQMIANGE 32 (81)
Q Consensus 3 ~elk~~Les----~~~~~K~ealKkiI~~~~~G~ 32 (81)
..+|+.|+. -+-..|.+.++..|...++|+
T Consensus 36 K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~L~~~ 69 (70)
T 1q1v_A 36 KQICKKVYENYPTYDLTERKDFIKTTVKELISLE 69 (70)
T ss_dssp HHHHHHHHHHCSSSCCSHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHccCCCChHHHHHHHHHHHHHHhcc
Confidence 345555542 345578888888888888876
No 13
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.60 E-value=29 Score=17.22 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=15.0
Q ss_pred hhcCChHHHHHHHHHHHHHH
Q psy17939 9 IEKGDTKIKIEALKKVIQMI 28 (81)
Q Consensus 9 Les~~~~~K~ealKkiI~~~ 28 (81)
+|...-+.|+.|+|+-|+..
T Consensus 7 fendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 7 FENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHh
Confidence 44555678999999988764
No 14
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=30.46 E-value=21 Score=23.03 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=17.0
Q ss_pred CCChhhHHHHHHHHHhccC
Q psy17939 48 MQDHMIKKLLLIFWEIVPK 66 (81)
Q Consensus 48 s~n~~lKKLl~lY~e~~~k 66 (81)
|+|.++||+.-+|++-|.|
T Consensus 83 ten~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 83 SDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 6999999999999998854
No 15
>1c3y_A THP12 carrier protein; EF-hand, all-alpha, antifreeze protein; NMR {Tenebrio molitor} SCOP: a.39.2.1 PDB: 1c3z_A
Probab=29.93 E-value=32 Score=19.98 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=29.5
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHhccCCCCCCCccccee
Q psy17939 38 LMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPDGKLLQDRC 78 (81)
Q Consensus 38 ~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~dGkL~~Emi 78 (81)
+-.+-++-.|. |.++|-.+.=+++-..-.|.+|++..+-+
T Consensus 25 ~~~~~~~~~~~-d~~~kC~~~C~~~k~g~~d~~g~~~~~~~ 64 (108)
T 1c3y_A 25 LNKVRNREEVD-DPKLKEHAFCILKRAGFIDASGEFQLDHI 64 (108)
T ss_dssp HHHHTSSSCCC-CHHHHHHHHHHHHHHTSSCTTCCCCHHHH
T ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHhcCcCCCCCCCcHHHH
Confidence 33344444555 88999999999998888888998876543
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=28.98 E-value=1.3e+02 Score=21.87 Aligned_cols=62 Identities=15% Similarity=0.264 Sum_probs=42.5
Q ss_pred hHHHhhhhcCChHHHHHHHHHHHHHHHcCCCC-------CcchHHHHHhhccCC-ChhhHHHHHHHHHhcc
Q psy17939 3 PCVSHHIEKGDTKIKIEALKKVIQMIANGERL-------PGILMIIIRFVLPMQ-DHMIKKLLLIFWEIVP 65 (81)
Q Consensus 3 ~elk~~Les~~~~~K~ealKkiI~~~~~G~~~-------~~L~m~VIr~v~ps~-n~~lKKLl~lY~e~~~ 65 (81)
..+-+.|.+++.+.+..|+..+-.....+.+. .+.++.+++.+- +. |.+++....-.+-.+.
T Consensus 90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~-~~~~~~v~~~A~~~L~~l~ 159 (530)
T 1wa5_B 90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR-ENQPEMLQLEAAWALTNIA 159 (530)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS-TTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHh
Confidence 35667788999889999988877666654332 467888887554 54 7888876555554443
No 17
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=27.62 E-value=1.8e+02 Score=22.27 Aligned_cols=56 Identities=7% Similarity=0.022 Sum_probs=43.4
Q ss_pred cCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccC
Q psy17939 11 KGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPK 66 (81)
Q Consensus 11 s~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k 66 (81)
..+...|..++-.+.-...+..+..+.+..++..+..+.|.+++.=-+.||.....
T Consensus 522 ~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 522 MSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 45677788777777666666555566777777777889999999999999999764
No 18
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=27.40 E-value=18 Score=22.72 Aligned_cols=48 Identities=8% Similarity=0.109 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCC-CCCCCc
Q psy17939 18 IEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKT-TPDGKL 73 (81)
Q Consensus 18 ~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~-~~dGkL 73 (81)
..-+-.+|.--++-.+-.++|. +|.+++|+.+-.+.- +|+++ |.||-|
T Consensus 56 v~~~~~~iRk~l~l~~~~alfl-~vn~~~p~~~~~m~~-------LY~~~kd~DGfL 104 (110)
T 2r2q_A 56 VGQFYFLIRKRIHLRPEDALFF-FVNNTIPPTSATMGQ-------LYEDNHEEDYFL 104 (110)
T ss_dssp HHHHHHHHHHHTTCCTTSCCEE-EBTTBCCCTTSBHHH-------HHHHHCCTTSCE
T ss_pred HHHHHHHHHHHhcCCCCCcEEE-EECCEecCccChHHH-------HHHHcCCCCCEE
Confidence 3344445554455555566776 778899988877654 34444 678876
No 19
>3s0a_A OBP14; all helical protein, unknown odorant molecules, antennae, TR protein; 1.15A {Apis mellifera} PDB: 3rzs_A 3s0b_A* 3s0d_A* 3s0e_A* 3s0f_A 3s0g_A
Probab=26.75 E-value=1.1e+02 Score=18.49 Aligned_cols=33 Identities=3% Similarity=-0.000 Sum_probs=26.7
Q ss_pred ccCCChhhHHHHHHHHHhccCCCCCCCccccee
Q psy17939 46 LPMQDHMIKKLLLIFWEIVPKTTPDGKLLQDRC 78 (81)
Q Consensus 46 ~ps~n~~lKKLl~lY~e~~~k~~~dGkL~~Emi 78 (81)
.|..|..+|-.+.=+++-..-.|+||++-.|.+
T Consensus 36 ~~~~d~~~kC~~~C~~~k~g~~d~~G~~~~~~~ 68 (119)
T 3s0a_A 36 IDVEDKKVQLYCECILKNFNILDKNNVFKPQGI 68 (119)
T ss_dssp CCTTCHHHHHHHHHHHHHTTSBCTTCCBCHHHH
T ss_pred CCCCChhhhHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 345688899999999999998999999876644
No 20
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=26.38 E-value=1.5e+02 Score=20.02 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=39.6
Q ss_pred hHHHhhhhcCChHHHHHHHHHHHHHHHcCCC--------C-CcchHHHHHhhccCCChhhHHHHH
Q psy17939 3 PCVSHHIEKGDTKIKIEALKKVIQMIANGER--------L-PGILMIIIRFVLPMQDHMIKKLLL 58 (81)
Q Consensus 3 ~elk~~Les~~~~~K~ealKkiI~~~~~G~~--------~-~~L~m~VIr~v~ps~n~~lKKLl~ 58 (81)
++|-..|.+.+-..|.+++.-+......... + +.+++.+. .++...+.+++.--+
T Consensus 149 ~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~-~~l~D~~~~VR~aA~ 212 (249)
T 2qk1_A 149 KDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVI-QIVNDTQPAIRTIGF 212 (249)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHH-HHHTCSSHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-HHhcCCCHHHHHHHH
Confidence 4677788888999999999999998777654 2 44555444 466577888877443
No 21
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=25.78 E-value=48 Score=22.46 Aligned_cols=40 Identities=5% Similarity=-0.042 Sum_probs=28.1
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhc
Q psy17939 4 CVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVL 46 (81)
Q Consensus 4 elk~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ 46 (81)
||++.|++..+.++.+.|++.+. +|+++-++=.+.+|-++
T Consensus 2 ~i~~~L~~~~d~~~a~~~~~y~k---~~~~flGV~~P~lR~la 41 (220)
T 2b6c_A 2 NAMDTLQFQKNPETAAKMSAYMK---HQFVFAGIPAPERQALS 41 (220)
T ss_dssp ----CCCCCCCHHHHHHHHHHTT---TSSCCCCCCHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHcC---CCCeeeCCChHHHHHHH
Confidence 68899999999999999988765 67777776666666444
No 22
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=22.63 E-value=28 Score=22.13 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCC-CCCCCc
Q psy17939 18 IEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKT-TPDGKL 73 (81)
Q Consensus 18 ~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~-~~dGkL 73 (81)
...+-.+|.--++-.+-.++|. +|.+++|+.+-.+.-| |+++ |.||-|
T Consensus 57 v~~f~~~iRk~l~l~~~~alfl-~vn~~~p~~~~~m~~L-------Y~~~kd~DGfL 105 (117)
T 1eo6_A 57 VAQFMWIIRKRIQLPSEKAIFL-FVDKTVPQSSLTMGQL-------YEKEKDEDGFL 105 (117)
T ss_dssp HHHHHHHHHHHHTCCTTSCCEE-EBTTBCCCTTSBHHHH-------HHHHCCTTSCE
T ss_pred HHHHHHhhHHhhcCCCCCcEEE-EECCEecCccchHHHH-------HHHhCCCCCEE
Confidence 3444455554455555566776 7788999888776543 4433 678876
No 23
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=22.44 E-value=53 Score=22.41 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=38.5
Q ss_pred hhHHHhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHH-----------------------HHhhccCCChhhHHHHH
Q psy17939 2 APCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMII-----------------------IRFVLPMQDHMIKKLLL 58 (81)
Q Consensus 2 ~~elk~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~V-----------------------Ir~v~ps~n~~lKKLl~ 58 (81)
.++|++.|++..+.++.+.|.+.+.. +.++-++=++. +..+.-+..||.+-+..
T Consensus 6 ~~~i~~~L~~~ad~~~a~~~~~~~k~---~~~~lGVr~P~lR~laK~~~k~~~~~~~~~~~~~~~~L~~~~~~E~r~~ai 82 (232)
T 3jxy_A 6 VKALQEHFTAHQNPEKAEPMARYMKN---HFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAAAL 82 (232)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTT---SSBCCCCCHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHTSSBHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHCCC---CCeeeccChHHHHHHHHHHHHhccccchhhHHHHHHHHhcCcHHHHHHHHH
Confidence 47899999999999999988876532 33333333333 33333456667766666
Q ss_pred HHHHhc
Q psy17939 59 IFWEIV 64 (81)
Q Consensus 59 lY~e~~ 64 (81)
.|+.-.
T Consensus 83 ~~l~~~ 88 (232)
T 3jxy_A 83 DIMQKY 88 (232)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 666543
No 24
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET: CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Probab=21.26 E-value=20 Score=26.93 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred CcchHHHHHhhccC--CChhhHHHH-HHHHHhccCCCCCCCc
Q psy17939 35 PGILMIIIRFVLPM--QDHMIKKLL-LIFWEIVPKTTPDGKL 73 (81)
Q Consensus 35 ~~L~m~VIr~v~ps--~n~~lKKLl-~lY~e~~~k~~~dGkL 73 (81)
+...+.+++..+.. +|.++++|+ -.=|-++|-.||||--
T Consensus 171 ~~~~~~l~~~L~~~y~~d~~~~~ll~~~~~~ivP~~NPDG~~ 212 (403)
T 1pca_A 171 QASGVWFAKKITENYGQNSSFTAILDSMDIFLEIVTNPNGFA 212 (403)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHhCCcEEEEeeecCCcce
Confidence 45677788877743 477888888 5668889999999954
No 25
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris} PDB: 1obr_A 3qnv_A
Probab=21.03 E-value=9.4 Score=27.58 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=27.2
Q ss_pred cchHHHHHhhccC--CChhhHHHH-HHHHHhccCCCCCCC
Q psy17939 36 GILMIIIRFVLPM--QDHMIKKLL-LIFWEIVPKTTPDGK 72 (81)
Q Consensus 36 ~L~m~VIr~v~ps--~n~~lKKLl-~lY~e~~~k~~~dGk 72 (81)
.+.+.++++++.. +|.++++|+ -.=|-++|-.||||-
T Consensus 77 ~~~~~l~~~L~~~y~~d~~~~~ll~~~~~~ivP~~NPDG~ 116 (323)
T 3prt_A 77 EMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGG 116 (323)
T ss_dssp HHHHHHHHHHHHTTTTSHHHHHHHTTCEEEEECCSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHhCCeEEEEeeecCchh
Confidence 4566777776643 578888888 456778999999983
Done!