Your job contains 1 sequence.
>psy17939
MAPCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIF
WEIVPKTTPDGKLLQDRCKTT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17939
(81 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|E9PKQ1 - symbol:COPB1 "Coatomer subunit beta" s... 280 1.6e-24 1
UNIPROTKB|E9PP63 - symbol:COPB1 "Coatomer subunit beta" s... 280 1.6e-24 1
UNIPROTKB|Q5ZIA5 - symbol:COPB1 "Coatomer subunit beta" s... 289 2.9e-24 1
UNIPROTKB|E9PP73 - symbol:COPB1 "Coatomer subunit beta" s... 280 5.0e-24 1
UNIPROTKB|F1S982 - symbol:COPB1 "Coatomer subunit beta" s... 280 9.9e-24 1
ZFIN|ZDB-GENE-030219-38 - symbol:copb1 "coatomer protein ... 283 1.3e-23 1
UNIPROTKB|A0JN39 - symbol:COPB1 "Coatomer subunit beta" s... 280 2.7e-23 1
UNIPROTKB|E2R9A2 - symbol:COPB1 "Coatomer subunit beta" s... 280 2.7e-23 1
UNIPROTKB|P53618 - symbol:COPB1 "Coatomer subunit beta" s... 280 2.7e-23 1
UNIPROTKB|D2SW95 - symbol:COPB1 "Coatomer subunit beta" s... 280 2.7e-23 1
MGI|MGI:1917599 - symbol:Copb1 "coatomer protein complex,... 280 2.7e-23 1
RGD|620861 - symbol:Copb1 "coatomer protein complex, subu... 280 2.7e-23 1
FB|FBgn0008635 - symbol:betaCop "beta-coatomer protein" s... 268 5.3e-22 1
WB|WBGene00021292 - symbol:copb-1 species:6239 "Caenorhab... 197 2.1e-14 1
DICTYBASE|DDB_G0284735 - symbol:copB "coatomer protein co... 173 7.0e-12 1
TAIR|locus:2125259 - symbol:AT4G31490 species:3702 "Arabi... 173 7.3e-12 1
CGD|CAL0000129 - symbol:SEC26 species:5476 "Candida albic... 163 8.6e-11 1
UNIPROTKB|Q5A6M6 - symbol:SEC26 "Coatomer subunit beta" s... 163 8.6e-11 1
POMBASE|SPBC146.14c - symbol:sec26 "coatomer beta subunit... 162 1.1e-10 1
SGD|S000002646 - symbol:SEC26 "Essential beta-coat protei... 161 1.5e-10 1
ASPGD|ASPL0000052724 - symbol:AN1177 species:162425 "Emer... 155 6.1e-10 1
GENEDB_PFALCIPARUM|PF14_0277 - symbol:PF14_0277 "coatamer... 126 1.2e-06 1
UNIPROTKB|Q8ILG6 - symbol:PF14_0277 "Coatamer protein, be... 126 1.2e-06 1
>UNIPROTKB|E9PKQ1 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9606 "Homo
sapiens" [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0006891 "intra-Golgi vesicle-mediated transport"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
InterPro:IPR002553 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0006891 GO:GO:0030126 PANTHER:PTHR10635
HGNC:HGNC:2231 ChiTaRS:COPB1 EMBL:AC018523 IPI:IPI00981105
ProteinModelPortal:E9PKQ1 Ensembl:ENST00000529866
ArrayExpress:E9PKQ1 Bgee:E9PKQ1 Uniprot:E9PKQ1
Length = 137
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>UNIPROTKB|E9PP63 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9606 "Homo
sapiens" [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0006891 "intra-Golgi vesicle-mediated transport"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
InterPro:IPR002553 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0006891 GO:GO:0030126 PANTHER:PTHR10635
HGNC:HGNC:2231 ChiTaRS:COPB1 EMBL:AC018523 IPI:IPI00980624
ProteinModelPortal:E9PP63 Ensembl:ENST00000534771
ArrayExpress:E9PP63 Bgee:E9PP63 Uniprot:E9PP63
Length = 132
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>UNIPROTKB|Q5ZIA5 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9031 "Gallus
gallus" [GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0030126 "COPI vesicle coat" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] InterPro:IPR002553
InterPro:IPR011710 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727 GO:GO:0006886
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0016192 GO:GO:0005198 eggNOG:COG5096
GO:GO:0030126 HOGENOM:HOG000207417 PANTHER:PTHR10635 CTD:1315
GeneTree:ENSGT00390000005270 HOVERGEN:HBG005380 OMA:DFEWENK
OrthoDB:EOG4KPT94 EMBL:AJ720879 IPI:IPI00599398
RefSeq:NP_001006467.1 UniGene:Gga.3647 ProteinModelPortal:Q5ZIA5
STRING:Q5ZIA5 PRIDE:Q5ZIA5 Ensembl:ENSGALT00000009679 GeneID:423063
KEGG:gga:423063 InParanoid:Q5ZIA5 NextBio:20825590 Uniprot:Q5ZIA5
Length = 953
Score = 289 (106.8 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 54/72 (75%), Positives = 64/72 (88%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K+K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKLKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LLQ+
Sbjct: 86 PKTTPDGRLLQE 97
>UNIPROTKB|E9PP73 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9606 "Homo
sapiens" [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0030117 "membrane coat" evidence=IEA]
InterPro:IPR002553 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0030117 GO:GO:0016192 PANTHER:PTHR10635
HGNC:HGNC:2231 ChiTaRS:COPB1 EMBL:AC018523 IPI:IPI00982417
ProteinModelPortal:E9PP73 SMR:E9PP73 PRIDE:E9PP73
Ensembl:ENST00000534234 ArrayExpress:E9PP73 Bgee:E9PP73
Uniprot:E9PP73
Length = 486
Score = 280 (103.6 bits), Expect = 5.0e-24, P = 5.0e-24
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>UNIPROTKB|F1S982 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9823 "Sus
scrofa" [GO:0030117 "membrane coat" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR002553
InterPro:IPR016024 InterPro:IPR016460 Pfam:PF01602 GO:GO:0006886
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0030117
GO:GO:0016192 PANTHER:PTHR10635 GeneTree:ENSGT00390000005270
EMBL:CU487223 Ensembl:ENSSSCT00000014629 OMA:LELATLX Uniprot:F1S982
Length = 590
Score = 280 (103.6 bits), Expect = 9.9e-24, P = 9.9e-24
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>ZFIN|ZDB-GENE-030219-38 [details] [associations]
symbol:copb1 "coatomer protein complex, subunit beta
1" species:7955 "Danio rerio" [GO:0030117 "membrane coat"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] [GO:0030126 "COPI
vesicle coat" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0031410 "cytoplasmic vesicle"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0030903
"notochord development" evidence=IMP] InterPro:IPR002553
InterPro:IPR011710 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727 ZFIN:ZDB-GENE-030219-38
GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0016192 GO:GO:0005198 eggNOG:COG5096
GO:GO:0030126 GO:GO:0030903 HOGENOM:HOG000207417 PANTHER:PTHR10635
CTD:1315 GeneTree:ENSGT00390000005270 HOVERGEN:HBG005380
OMA:DFEWENK OrthoDB:EOG4KPT94 EMBL:AY294010 EMBL:BC081657
IPI:IPI00639577 RefSeq:NP_001002013.1 UniGene:Dr.77150
ProteinModelPortal:Q66HV4 STRING:Q66HV4 PRIDE:Q66HV4
Ensembl:ENSDART00000079042 GeneID:338138 KEGG:dre:338138
InParanoid:Q6JWU8 NextBio:20812553 Bgee:Q66HV4 Uniprot:Q66HV4
Length = 953
Score = 283 (104.7 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 54/68 (79%), Positives = 61/68 (89%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+EKG+ K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIVPKTT
Sbjct: 30 LEKGEIKAKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTT 89
Query: 69 PDGKLLQD 76
PDGKLLQ+
Sbjct: 90 PDGKLLQE 97
>UNIPROTKB|A0JN39 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005793
"endoplasmic reticulum-Golgi intermediate compartment"
evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0005198 "structural molecule activity" evidence=IEA]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
GO:GO:0005886 GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 PROSITE:PS50077 GO:GO:0016192 GO:GO:0005198
GO:GO:0005793 eggNOG:COG5096 GO:GO:0030126 HOGENOM:HOG000207417
PANTHER:PTHR10635 EMBL:BC126502 IPI:IPI00712785
RefSeq:NP_001071475.1 UniGene:Bt.22486 STRING:A0JN39 PRIDE:A0JN39
Ensembl:ENSBTAT00000008616 GeneID:535533 KEGG:bta:535533 CTD:1315
GeneTree:ENSGT00390000005270 HOVERGEN:HBG005380 InParanoid:A0JN39
OMA:DFEWENK OrthoDB:EOG4KPT94 NextBio:20876774 Uniprot:A0JN39
Length = 953
Score = 280 (103.6 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>UNIPROTKB|E2R9A2 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9615 "Canis
lupus familiaris" [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0005198 "structural molecule activity" evidence=IEA]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0016192 GO:GO:0005198 GO:GO:0030126 PANTHER:PTHR10635
CTD:1315 GeneTree:ENSGT00390000005270 OMA:DFEWENK EMBL:AAEX03012936
RefSeq:XP_534069.3 Ensembl:ENSCAFT00000013410 GeneID:476866
KEGG:cfa:476866 Uniprot:E2R9A2
Length = 953
Score = 280 (103.6 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>UNIPROTKB|P53618 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9606 "Homo
sapiens" [GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005793
"endoplasmic reticulum-Golgi intermediate compartment"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030126 "COPI
vesicle coat" evidence=ISS] [GO:0006891 "intra-Golgi
vesicle-mediated transport" evidence=ISS] [GO:0000139 "Golgi
membrane" evidence=TAS] [GO:0005798 "Golgi-associated vesicle"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006890
"retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
[GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR002553 InterPro:IPR011710
InterPro:IPR016024 InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718
PIRSF:PIRSF005727 GO:GO:0005829 GO:GO:0005886 GO:GO:0019048
GO:GO:0006886 EMBL:CH471064 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 PROSITE:PS50077 GO:GO:0005198 GO:GO:0006891
GO:GO:0005793 eggNOG:COG5096 GO:GO:0030126 GO:GO:0048205
GO:GO:0006890 HOGENOM:HOG000207417 PANTHER:PTHR10635 CTD:1315
HOVERGEN:HBG005380 OMA:DFEWENK OrthoDB:EOG4KPT94 EMBL:AF084457
EMBL:AF111807 EMBL:AL136593 EMBL:BC037280 EMBL:X82103
IPI:IPI00295851 PIR:A55136 PIR:T46913 RefSeq:NP_001137533.1
RefSeq:NP_001137534.1 RefSeq:NP_057535.1 UniGene:Hs.339278
ProteinModelPortal:P53618 SMR:P53618 DIP:DIP-265N IntAct:P53618
MINT:MINT-1151935 STRING:P53618 PhosphoSite:P53618 DMDM:116241311
PaxDb:P53618 PeptideAtlas:P53618 PRIDE:P53618 DNASU:1315
Ensembl:ENST00000249923 Ensembl:ENST00000439561 GeneID:1315
KEGG:hsa:1315 UCSC:uc001mlg.2 GeneCards:GC11M014436
H-InvDB:HIX0009466 HGNC:HGNC:2231 HPA:CAB012338 MIM:600959
neXtProt:NX_P53618 PharmGKB:PA26747 InParanoid:P53618 ChiTaRS:COPB1
GenomeRNAi:1315 NextBio:5379 ArrayExpress:P53618 Bgee:P53618
CleanEx:HS_COPB1 Genevestigator:P53618 GermOnline:ENSG00000129083
Uniprot:P53618
Length = 953
Score = 280 (103.6 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>UNIPROTKB|D2SW95 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005793
"endoplasmic reticulum-Golgi intermediate compartment"
evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0005198 "structural molecule activity" evidence=IEA]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
GO:GO:0005886 GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 PROSITE:PS50077 GO:GO:0016192 GO:GO:0005198
GO:GO:0005793 GO:GO:0030126 PANTHER:PTHR10635 CTD:1315
EMBL:FJ865397 RefSeq:NP_001165837.1 UniGene:Ssc.2442
GeneID:100337660 KEGG:ssc:100337660 Uniprot:D2SW95
Length = 953
Score = 280 (103.6 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>MGI|MGI:1917599 [details] [associations]
symbol:Copb1 "coatomer protein complex, subunit beta 1"
species:10090 "Mus musculus" [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=ISO;IDA] [GO:0005798
"Golgi-associated vesicle" evidence=ISO] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISO]
[GO:0015031 "protein transport" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0030117 "membrane coat" evidence=IEA] [GO:0030126
"COPI vesicle coat" evidence=ISO] [GO:0030137 "COPI-coated vesicle"
evidence=IDA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
MGI:MGI:1917599 GO:GO:0005886 GO:GO:0006886 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 PROSITE:PS50077 GO:GO:0005198
EMBL:CH466531 GO:GO:0006891 GO:GO:0005793 eggNOG:COG5096
GO:GO:0030137 GO:GO:0030126 HOGENOM:HOG000207417 PANTHER:PTHR10635
CTD:1315 GeneTree:ENSGT00390000005270 HOVERGEN:HBG005380
OMA:DFEWENK OrthoDB:EOG4KPT94 EMBL:AF231925 EMBL:AK149828
EMBL:AK152222 EMBL:AK161544 EMBL:AK172214 EMBL:BC030837
IPI:IPI00120503 RefSeq:NP_203534.1 UniGene:Mm.277024
ProteinModelPortal:Q9JIF7 SMR:Q9JIF7 DIP:DIP-42642N IntAct:Q9JIF7
MINT:MINT-1489518 STRING:Q9JIF7 PhosphoSite:Q9JIF7 PaxDb:Q9JIF7
PRIDE:Q9JIF7 Ensembl:ENSMUST00000033012 GeneID:70349 KEGG:mmu:70349
InParanoid:Q3T9Y4 NextBio:331414 Bgee:Q9JIF7 CleanEx:MM_COPB1
Genevestigator:Q9JIF7 GermOnline:ENSMUSG00000030754 Uniprot:Q9JIF7
Length = 953
Score = 280 (103.6 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>RGD|620861 [details] [associations]
symbol:Copb1 "coatomer protein complex, subunit beta 1"
species:10116 "Rattus norvegicus" [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005793
"endoplasmic reticulum-Golgi intermediate compartment"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=ISO;IDA]
[GO:0005798 "Golgi-associated vesicle" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0006886 "intracellular protein
transport" evidence=IEA] [GO:0006890 "retrograde vesicle-mediated
transport, Golgi to ER" evidence=TAS] [GO:0006891 "intra-Golgi
vesicle-mediated transport" evidence=IDA] [GO:0030126 "COPI vesicle
coat" evidence=IDA] [GO:0030137 "COPI-coated vesicle" evidence=ISO]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
RGD:620861 GO:GO:0005783 GO:GO:0005886 GO:GO:0006886
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0005198 GO:GO:0006891 GO:GO:0005793
eggNOG:COG5096 GO:GO:0030126 GO:GO:0006890 HOGENOM:HOG000207417
PANTHER:PTHR10635 CTD:1315 GeneTree:ENSGT00390000005270
HOVERGEN:HBG005380 OMA:DFEWENK OrthoDB:EOG4KPT94 EMBL:X57228
EMBL:BC061882 IPI:IPI00211812 PIR:S13520 RefSeq:NP_542959.1
UniGene:Rn.4327 ProteinModelPortal:P23514 IntAct:P23514
STRING:P23514 PRIDE:P23514 Ensembl:ENSRNOT00000016292 GeneID:114023
KEGG:rno:114023 UCSC:RGD:620861 InParanoid:P23514 NextBio:618175
Genevestigator:P23514 GermOnline:ENSRNOG00000012000 Uniprot:P23514
Length = 953
Score = 280 (103.6 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85
Query: 65 PKTTPDGKLLQD 76
PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97
>FB|FBgn0008635 [details] [associations]
symbol:betaCop "beta-coatomer protein" species:7227
"Drosophila melanogaster" [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0006890 "retrograde vesicle-mediated transport,
Golgi to ER" evidence=ISS;NAS] [GO:0030126 "COPI vesicle coat"
evidence=ISS;NAS] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] [GO:0006911 "phagocytosis, engulfment" evidence=IMP]
[GO:0010883 "regulation of lipid storage" evidence=IDA] [GO:0000902
"cell morphogenesis" evidence=IMP] InterPro:IPR002553
InterPro:IPR011710 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727 GO:GO:0005794
GO:GO:0006886 GO:GO:0006911 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 PROSITE:PS50077 GO:GO:0005198 EMBL:AE014298
GO:GO:0000902 eggNOG:COG5096 GO:GO:0030126 GO:GO:0010883
PANTHER:PTHR10635 GeneTree:ENSGT00390000005270 OMA:DFEWENK
EMBL:L31852 EMBL:AF145656 RefSeq:NP_523400.1 UniGene:Dm.2883
ProteinModelPortal:P45437 SMR:P45437 DIP:DIP-23112N IntAct:P45437
MINT:MINT-846029 STRING:P45437 PaxDb:P45437
EnsemblMetazoa:FBtr0074576 GeneID:32820 KEGG:dme:Dmel_CG6223
CTD:32820 FlyBase:FBgn0008635 InParanoid:P45437 OrthoDB:EOG4MGQP7
PhylomeDB:P45437 GenomeRNAi:32820 NextBio:780558 Bgee:P45437
GermOnline:CG6223 Uniprot:P45437
Length = 964
Score = 268 (99.4 bits), Expect = 5.3e-22, P = 5.3e-22
Identities = 49/68 (72%), Positives = 61/68 (89%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+EKGDT +KIE LK+VI+++ NGER PG++M IIRFVLP+Q+H IKKLLLIFWEIVPKT+
Sbjct: 28 LEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTS 87
Query: 69 PDGKLLQD 76
DGKLLQ+
Sbjct: 88 ADGKLLQE 95
>WB|WBGene00021292 [details] [associations]
symbol:copb-1 species:6239 "Caenorhabditis elegans"
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0016192 "vesicle-mediated transport" evidence=IEA] [GO:0030117
"membrane coat" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0030126 "COPI vesicle coat"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0032940 "secretion by cell"
evidence=IMP] InterPro:IPR002553 InterPro:IPR011710
InterPro:IPR016024 InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718
PIRSF:PIRSF005727 GO:GO:0008340 GO:GO:0006886 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0032940 GO:GO:0016192
GO:GO:0005198 GO:GO:0000003 eggNOG:COG5096 GO:GO:0030126
HOGENOM:HOG000207417 PANTHER:PTHR10635 GeneTree:ENSGT00390000005270
OMA:DFEWENK EMBL:FO080207 PIR:T33907 RefSeq:NP_494441.1
ProteinModelPortal:Q9TYL9 SMR:Q9TYL9 STRING:Q9TYL9 PaxDb:Q9TYL9
EnsemblMetazoa:Y25C1A.5 GeneID:173656 KEGG:cel:CELE_Y25C1A.5
UCSC:Y25C1A.5.1 CTD:173656 WormBase:Y25C1A.5 InParanoid:Q9TYL9
NextBio:880553 Uniprot:Q9TYL9
Length = 971
Score = 197 (74.4 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 40/68 (58%), Positives = 50/68 (73%)
Query: 10 EKGDTKIKIEALKKVIQMIANGERLP-GILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
EKG K +IEALKK+I MI NGE+ +LM +IRF LP +H +KK+LLIFWE VPKT
Sbjct: 31 EKGGDKERIEALKKLIYMILNGEKTSQSMLMYVIRFCLPSNEHTLKKVLLIFWECVPKTD 90
Query: 69 PDGKLLQD 76
+GKLL +
Sbjct: 91 SNGKLLHE 98
>DICTYBASE|DDB_G0284735 [details] [associations]
symbol:copB "coatomer protein complex beta subunit"
species:44689 "Dictyostelium discoideum" [GO:0048471 "perinuclear
region of cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IEA;IDA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0030117 "membrane coat" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0031410 "cytoplasmic vesicle"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0030663 "COPI-coated vesicle membrane"
evidence=IEA] [GO:0000139 "Golgi membrane" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR002553
InterPro:IPR011710 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727 dictyBase:DDB_G0284735
GO:GO:0005794 GO:GO:0048471 GO:GO:0006886 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 PROSITE:PS50077
GenomeReviews:CM000153_GR GO:GO:0016192 GO:GO:0005198
EMBL:AAFI02000071 eggNOG:COG5096 GO:GO:0030126 PANTHER:PTHR10635
OMA:DFEWENK EMBL:AF247143 EMBL:U62960 RefSeq:XP_638375.1
ProteinModelPortal:Q23924 STRING:Q23924 PRIDE:Q23924
EnsemblProtists:DDB0191250 GeneID:8624744 KEGG:ddi:DDB_G0284735
ProtClustDB:CLSZ2430217 Uniprot:Q23924
Length = 912
Score = 173 (66.0 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 37/66 (56%), Positives = 46/66 (69%)
Query: 8 HIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKT 67
+ E G T+ KIE LKKVI NGE +P +LM II +V+P DH IKKLLLI+WE++ KT
Sbjct: 34 NFEHGTTEQKIETLKKVILYTINGEPIPQLLMPIILYVMPSNDHTIKKLLLIYWEVIEKT 93
Query: 68 TPDGKL 73
GKL
Sbjct: 94 HL-GKL 98
>TAIR|locus:2125259 [details] [associations]
symbol:AT4G31490 species:3702 "Arabidopsis thaliana"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006886 "intracellular
protein transport" evidence=IEA] [GO:0016192 "vesicle-mediated
transport" evidence=IEA] [GO:0030117 "membrane coat" evidence=IEA]
[GO:0030126 "COPI vesicle coat" evidence=IEA] [GO:0030276 "clathrin
binding" evidence=ISS] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR002553
InterPro:IPR011710 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727 GO:GO:0005829
GO:GO:0006886 EMBL:CP002687 GenomeReviews:CT486007_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0016020 GO:GO:0016192 GO:GO:0005198
eggNOG:COG5096 GO:GO:0030126 EMBL:AL080283 EMBL:AL161579
EMBL:AK228881 IPI:IPI00528352 PIR:T10679 RefSeq:NP_194877.2
UniGene:At.47266 ProteinModelPortal:Q9SV20 SMR:Q9SV20 IntAct:Q9SV20
STRING:Q9SV20 PaxDb:Q9SV20 PRIDE:Q9SV20 EnsemblPlants:AT4G31490.1
GeneID:829276 KEGG:ath:AT4G31490 TAIR:At4g31490
HOGENOM:HOG000207417 InParanoid:Q9SV20 OMA:NDIHVDI PhylomeDB:Q9SV20
ProtClustDB:CLSN2685858 Genevestigator:Q9SV20 PANTHER:PTHR10635
Uniprot:Q9SV20
Length = 948
Score = 173 (66.0 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 30/72 (41%), Positives = 50/72 (69%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ +E D + K++A+KK I ++ NGE +P + + IIR+VLP +DH I+KLLL++ E++
Sbjct: 22 IKEALEGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELI 81
Query: 65 PKTTPDGKLLQD 76
KT GK+L +
Sbjct: 82 EKTDSKGKVLPE 93
>CGD|CAL0000129 [details] [associations]
symbol:SEC26 species:5476 "Candida albicans" [GO:0005886
"plasma membrane" evidence=IDA] [GO:0030126 "COPI vesicle coat"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006888 "ER
to Golgi vesicle-mediated transport" evidence=IEA]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
CGD:CAL0000129 GO:GO:0005886 GO:GO:0006886 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0016192 GO:GO:0005198
eggNOG:COG5096 GO:GO:0030126 EMBL:AACQ01000055 EMBL:AACQ01000054
HOGENOM:HOG000207417 PANTHER:PTHR10635 RefSeq:XP_717391.1
RefSeq:XP_717483.1 ProteinModelPortal:Q5A6M6 STRING:Q5A6M6
GeneID:3640891 GeneID:3641005 KEGG:cal:CaO19.528
KEGG:cal:CaO19.8161 Uniprot:Q5A6M6
Length = 952
Score = 163 (62.4 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+EKG +K++ +KK++ I NG+ LP +LM IIRFV+P ++ +KKLL +WE+ PK
Sbjct: 27 LEKGKDDVKVDTMKKILITILNGDPLPDLLMHIIRFVMPSRNKELKKLLYHYWEVCPKMD 86
Query: 69 PDGKL 73
GK+
Sbjct: 87 ESGKM 91
>UNIPROTKB|Q5A6M6 [details] [associations]
symbol:SEC26 "Coatomer subunit beta" species:237561
"Candida albicans SC5314" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR002553 InterPro:IPR011710
InterPro:IPR016024 InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718
PIRSF:PIRSF005727 CGD:CAL0000129 GO:GO:0005886 GO:GO:0006886
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0016192
GO:GO:0005198 eggNOG:COG5096 GO:GO:0030126 EMBL:AACQ01000055
EMBL:AACQ01000054 HOGENOM:HOG000207417 PANTHER:PTHR10635
RefSeq:XP_717391.1 RefSeq:XP_717483.1 ProteinModelPortal:Q5A6M6
STRING:Q5A6M6 GeneID:3640891 GeneID:3641005 KEGG:cal:CaO19.528
KEGG:cal:CaO19.8161 Uniprot:Q5A6M6
Length = 952
Score = 163 (62.4 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+EKG +K++ +KK++ I NG+ LP +LM IIRFV+P ++ +KKLL +WE+ PK
Sbjct: 27 LEKGKDDVKVDTMKKILITILNGDPLPDLLMHIIRFVMPSRNKELKKLLYHYWEVCPKMD 86
Query: 69 PDGKL 73
GK+
Sbjct: 87 ESGKM 91
>POMBASE|SPBC146.14c [details] [associations]
symbol:sec26 "coatomer beta subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006886 "intracellular protein transport"
evidence=IC] [GO:0006888 "ER to Golgi vesicle-mediated transport"
evidence=ISS] [GO:0030126 "COPI vesicle coat" evidence=ISS]
[GO:0030134 "ER to Golgi transport vesicle" evidence=IC]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
PomBase:SPBC146.14c GO:GO:0005829 GO:GO:0006886 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 PROSITE:PS50077 GO:GO:0005198
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006888
eggNOG:COG5096 GO:GO:0030126 GO:GO:0030134 HOGENOM:HOG000207417
PANTHER:PTHR10635 OMA:DFEWENK PIR:T39428 RefSeq:NP_595403.1
ProteinModelPortal:Q9UUF7 STRING:Q9UUF7 EnsemblFungi:SPBC146.14c.1
GeneID:2539798 KEGG:spo:SPBC146.14c OrthoDB:EOG483HCN
NextBio:20800947 Uniprot:Q9UUF7
Length = 940
Score = 162 (62.1 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+E + +KI A+K +++++ NG+ LP ILM +IRFV+P ++ +KKLL +WE+ PK
Sbjct: 24 LESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMPSRNKELKKLLYYYWEVCPKYN 83
Query: 69 PDGKLLQD 76
DG + Q+
Sbjct: 84 NDGTMKQE 91
>SGD|S000002646 [details] [associations]
symbol:SEC26 "Essential beta-coat protein of the COPI
coatomer" species:4932 "Saccharomyces cerevisiae" [GO:0005198
"structural molecule activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0016192 "vesicle-mediated
transport" evidence=IEA] [GO:0030117 "membrane coat" evidence=IEA]
[GO:0030126 "COPI vesicle coat" evidence=IEA;IGI;ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000139 "Golgi membrane"
evidence=IEA] [GO:0030663 "COPI-coated vesicle membrane"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0031410
"cytoplasmic vesicle" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0030135
"coated vesicle" evidence=ISS] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IMP] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR002553
InterPro:IPR011710 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727 SGD:S000002646
GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0005198 EMBL:BK006938 GO:GO:0006888
EMBL:Z49701 eggNOG:COG5096 GO:GO:0030126 HOGENOM:HOG000207417
PANTHER:PTHR10635 GeneTree:ENSGT00390000005270 OrthoDB:EOG483HCN
EMBL:U11236 PIR:S54534 RefSeq:NP_010524.3 RefSeq:NP_010529.3
ProteinModelPortal:P41810 DIP:DIP-6467N IntAct:P41810
MINT:MINT-429001 STRING:P41810 PaxDb:P41810 PeptideAtlas:P41810
EnsemblFungi:YDR238C GeneID:851824 GeneID:851830 KEGG:sce:YDR238C
KEGG:sce:YDR243C CYGD:YDR238c KO:K12858 OMA:TEFRSMW NextBio:969701
Genevestigator:P41810 GermOnline:YDR238C Uniprot:P41810
Length = 973
Score = 161 (61.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+EKG + KI+ +K ++ + G +P +LM IIRFV+P ++ +KKLL +WEIVPK
Sbjct: 32 LEKGSDEQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVPKLA 91
Query: 69 PDGKL 73
DGKL
Sbjct: 92 EDGKL 96
>ASPGD|ASPL0000052724 [details] [associations]
symbol:AN1177 species:162425 "Emericella nidulans"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0016192 "vesicle-mediated transport" evidence=IEA] [GO:0030126
"COPI vesicle coat" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR002553 InterPro:IPR011710
InterPro:IPR016024 InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718
PIRSF:PIRSF005727 GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0016192 EMBL:AACD01000016 EMBL:BN001308
GO:GO:0005198 eggNOG:COG5096 GO:GO:0030126 HOGENOM:HOG000207417
PANTHER:PTHR10635 OMA:DFEWENK OrthoDB:EOG483HCN RefSeq:XP_658781.1
ProteinModelPortal:Q5BE53 STRING:Q5BE53
EnsemblFungi:CADANIAT00001449 GeneID:2876954 KEGG:ani:AN1177.2
Uniprot:Q5BE53
Length = 950
Score = 155 (59.6 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 28/68 (41%), Positives = 48/68 (70%)
Query: 9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
+EKG + K++ ++++I ++ NG+ +P +LM IIRFV+P + +KKLL ++EI PK
Sbjct: 30 LEKGTDETKLDTMRRIITIMLNGDPMPQLLMHIIRFVMPSKSKPLKKLLYFYYEICPKHD 89
Query: 69 PDGKLLQD 76
+GKL Q+
Sbjct: 90 SNGKLKQE 97
>GENEDB_PFALCIPARUM|PF14_0277 [details] [associations]
symbol:PF14_0277 "coatamer protein, beta
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0006890
"retrograde vesicle-mediated transport, Golgi to ER" evidence=ISS]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 GO:GO:0006886
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005198
EMBL:AE014187 GO:GO:0030126 GO:GO:0006890 PANTHER:PTHR10635
RefSeq:XP_001348451.2 ProteinModelPortal:Q8ILG6 IntAct:Q8ILG6
MINT:MINT-1627118 PRIDE:Q8ILG6 EnsemblProtists:PF14_0277:mRNA
GeneID:811859 KEGG:pfa:PF14_0277 EuPathDB:PlasmoDB:PF3D7_1429800
HOGENOM:HOG000281254 ProtClustDB:CLSZ2433761 Uniprot:Q8ILG6
Length = 1370
Score = 126 (49.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ +E + KIE ++ +I I G +LM +IR+++P +DH +KK+ IF+EIV
Sbjct: 27 IQKKLESQNVDKKIEGMENLIFNIIQGVSYENLLMCVIRYIVPHKDHRLKKMCHIFFEIV 86
Query: 65 PKTTPDGKLLQD 76
K DG L ++
Sbjct: 87 DKCNSDGSLKEE 98
>UNIPROTKB|Q8ILG6 [details] [associations]
symbol:PF14_0277 "Coatamer protein, beta subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006890 "retrograde
vesicle-mediated transport, Golgi to ER" evidence=ISS]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 GO:GO:0006886
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005198
EMBL:AE014187 GO:GO:0030126 GO:GO:0006890 PANTHER:PTHR10635
RefSeq:XP_001348451.2 ProteinModelPortal:Q8ILG6 IntAct:Q8ILG6
MINT:MINT-1627118 PRIDE:Q8ILG6 EnsemblProtists:PF14_0277:mRNA
GeneID:811859 KEGG:pfa:PF14_0277 EuPathDB:PlasmoDB:PF3D7_1429800
HOGENOM:HOG000281254 ProtClustDB:CLSZ2433761 Uniprot:Q8ILG6
Length = 1370
Score = 126 (49.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
+ +E + KIE ++ +I I G +LM +IR+++P +DH +KK+ IF+EIV
Sbjct: 27 IQKKLESQNVDKKIEGMENLIFNIIQGVSYENLLMCVIRYIVPHKDHRLKKMCHIFFEIV 86
Query: 65 PKTTPDGKLLQD 76
K DG L ++
Sbjct: 87 DKCNSDGSLKEE 98
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.327 0.143 0.431 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 81 81 0.00091 102 3 11 22 0.36 29
29 0.42 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 534 (57 KB)
Total size of DFA: 103 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 8.54u 0.06s 8.60t Elapsed: 00:00:07
Total cpu time: 8.54u 0.06s 8.60t Elapsed: 00:00:08
Start: Thu Aug 15 12:43:36 2013 End: Thu Aug 15 12:43:44 2013