RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17939
         (81 letters)



>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 49.0 bits (116), Expect = 4e-09
 Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 9  IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
          +     + + EA+KKVI  +  G+ +  +   ++   +   +  +KKL+ ++     K+ 
Sbjct: 19 LNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN-CMQTDNLELKKLVYLYLMNYAKSQ 77

Query: 69 PDGKLL 74
          PD  ++
Sbjct: 78 PDMAIM 83


>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
           NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
          Length = 561

 Score = 24.9 bits (54), Expect = 1.2
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 7   HHIEKGDTKIKIEALKKVIQMIANG 31
            ++E  D K  ++ L+ V    A  
Sbjct: 481 SYVELPDMKNNLKGLEAVWDYAAQH 505


>d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 290

 Score = 24.2 bits (52), Expect = 2.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 4  CVSHHIEKGDTKIKIEALKKVIQMIAN 30
          CV  + E G TKI+I+    +I++  +
Sbjct: 7  CVEEYKENGKTKIRIKPFNALIELYHH 33


>d1vh6a_ a.24.19.1 (A:) Flagellar export chaperone FliS {Bacillus
          subtilis [TaxId: 1423]}
          Length = 102

 Score = 23.2 bits (50), Expect = 3.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 8  HIEKGDTKIKIEALKKVIQMI 28
           IE  D + K E L K   +I
Sbjct: 24 AIENDDMERKNENLIKAQNII 44


>d1nuba2 g.3.11.3 (A:53-77) Domain of BM-40/SPARC/osteonectin
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 26

 Score = 21.9 bits (46), Expect = 4.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 2  APCVSHHIEKG 12
          APC +HH + G
Sbjct: 1  APCQNHHCKHG 11


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.431 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 324,815
Number of extensions: 13300
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 8
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)