BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17940
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P45437|COPB_DROME Coatomer subunit beta OS=Drosophila melanogaster GN=betaCop PE=2
SV=2
Length = 964
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 5/81 (6%)
Query: 1 MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGS 60
ML+A+ E+ K K+K KVQPDDP+ F +LS+ R ++ G ENVFE SLNQAL GS
Sbjct: 654 MLDAQHDEDQRMLKEKQKATAKVQPDDPVLFAQLSNGRDNQLG--ENVFESSLNQALAGS 711
Query: 61 GPAAAQTQAADPSGASKLNKM 81
A + A P+ SKLNK+
Sbjct: 712 KNAQL-SDVASPN--SKLNKV 729
>sp|Q29G21|COPB_DROPS Coatomer subunit beta OS=Drosophila pseudoobscura pseudoobscura
GN=betaCop PE=3 SV=2
Length = 965
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 1 MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGS 60
ML+A+ E+ K K++ KVQPDDP+ F +LS+ R ++ G ENVFE SLNQAL G+
Sbjct: 655 MLDAQHDEDQRVLKEKQRATAKVQPDDPVLFAQLSNGRDNQLG--ENVFESSLNQALAGT 712
Query: 61 GPAAAQTQAADPSGA-SKLNKM 81
A Q +D S +KLNK+
Sbjct: 713 KTA----QLSDISSPNNKLNKV 730
>sp|Q5ZIA5|COPB_CHICK Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1
Length = 953
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)
Query: 1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
ML AK +EE +QK + EK VQPDDPISF++L++ +E E+ F+LSL A+
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMSSKEDQFQLSLLAAMGN 699
Query: 60 SGPAAAQTQAADPSGASKLNKM 81
+ + +AADP ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716
>sp|Q5R922|COPB_PONAB Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1
Length = 953
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)
Query: 1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
ML AK +EE +QK + EK VQPDDPISF++L++ +E E+ F+LSL A+
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAMGN 699
Query: 60 SGPAAAQTQAADPSGASKLNKM 81
+ + +AADP ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716
>sp|P53618|COPB_HUMAN Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3
Length = 953
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)
Query: 1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
ML AK +EE +QK + EK VQPDDPISF++L++ +E E+ F+LSL A+
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAMGN 699
Query: 60 SGPAAAQTQAADPSGASKLNKM 81
+ + +AADP ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716
>sp|A0JN39|COPB_BOVIN Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=1 SV=1
Length = 953
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)
Query: 1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
ML AK +EE +QK + EK VQPDDPISF++L++ +E E+ F+LSL A+
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAMGN 699
Query: 60 SGPAAAQTQAADPSGASKLNKM 81
+ + +AADP ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716
>sp|D2SW95|COPB_PIG Coatomer subunit beta OS=Sus scrofa GN=COPB1 PE=2 SV=1
Length = 953
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)
Query: 1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
ML AK +EE +QK + EK VQPDDPISF++L++ +E E+ F+LSL A+
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAMGN 699
Query: 60 SGPAAAQTQAADPSGASKLNKM 81
+ + +AADP ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716
>sp|P23514|COPB_RAT Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1
Length = 953
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)
Query: 1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
ML AK +EE +QK + EK VQPDDPISF++L++ +E E+ F+LSL A+
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAMGN 699
Query: 60 SGPAAAQTQAADPSGASKLNKM 81
+ + +AADP ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716
>sp|Q9JIF7|COPB_MOUSE Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1
Length = 953
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)
Query: 1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
ML AK +EE +QK + EK VQPDDPISF++L++ +E E+ F+LSL A+
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAMGN 699
Query: 60 SGPAAAQTQAADPSGASKLNKM 81
+ + +AADP ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716
>sp|Q66HV4|COPB_DANRE Coatomer subunit beta OS=Danio rerio GN=copb1 PE=2 SV=1
Length = 953
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
ML + +EE +QK + EK VQ DDPISF++L++ +E E+ F+LSL A+
Sbjct: 642 MLAVRLEEEKLSQKKESEKRNVTVQADDPISFMQLTAK--NEMASKEDQFQLSLLAAMGN 699
Query: 60 SGPAAAQTQAADPSGASKLNKM 81
+ + +A DP ASKLNK+
Sbjct: 700 T----QRKEATDPL-ASKLNKV 716
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.120 0.316
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,737,020
Number of Sequences: 539616
Number of extensions: 892222
Number of successful extensions: 1513
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1501
Number of HSP's gapped (non-prelim): 16
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)