Query psy17940
Match_columns 81
No_of_seqs 102 out of 138
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 18:13:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f9k_A CAMP-dependent protein 15.4 27 0.00093 22.2 -0.4 9 24-32 64-72 (95)
2 1q0v_A Hydrophilic protein; ha 13.3 71 0.0024 19.6 1.1 15 46-60 8-22 (81)
3 2izx_A CAMP-dependent protein 12.9 34 0.0012 17.6 -0.4 10 23-32 21-30 (41)
4 2kyg_A CAMP-dependent protein 12.5 36 0.0012 18.5 -0.4 10 23-32 29-38 (50)
5 2izy_A CAMP-dependent protein 11.1 42 0.0014 18.7 -0.4 10 23-32 24-33 (54)
6 3g36_A Protein DPY-30 homolog; 10.7 45 0.0015 18.9 -0.4 10 23-32 31-40 (55)
7 3vrc_A Cytochrome C'; C-type c 5.9 40 0.0014 21.6 -2.4 12 23-34 3-14 (131)
8 1l4t_A Gastrin/cholecystokinin 5.9 69 0.0024 16.1 -1.0 7 28-34 21-27 (30)
9 4din_B CAMP-dependent protein 5.3 1.7E+02 0.0058 20.9 0.4 10 23-32 41-50 (381)
10 3mqp_B Phorbol-12-myristate-13 5.1 59 0.002 15.9 -1.5 8 26-33 15-22 (25)
No 1
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=15.36 E-value=27 Score=22.22 Aligned_cols=9 Identities=44% Similarity=1.209 Sum_probs=8.0
Q ss_pred CCCCceeec
Q psy17940 24 QPDDPISFL 32 (81)
Q Consensus 24 Q~DD~I~Fr 32 (81)
+|||||.|.
T Consensus 64 RPeDPv~FL 72 (95)
T 4f9k_A 64 KPERPMKFL 72 (95)
T ss_dssp CCSCHHHHH
T ss_pred CCCCHHHHH
Confidence 899999885
No 2
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=13.33 E-value=71 Score=19.63 Aligned_cols=15 Identities=20% Similarity=-0.060 Sum_probs=10.8
Q ss_pred hhhhHhHHHHHhccC
Q psy17940 46 ENVFELSLNQALIGS 60 (81)
Q Consensus 46 ed~~e~dL~~A~g~~ 60 (81)
++.|++||.+|+--+
T Consensus 8 ~~~eDeDLkrAieLS 22 (81)
T 1q0v_A 8 PEDEEELIRKAIELS 22 (81)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHh
Confidence 457888999987543
No 3
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=12.94 E-value=34 Score=17.56 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=7.8
Q ss_pred CCCCCceeec
Q psy17940 23 VQPDDPISFL 32 (81)
Q Consensus 23 vQ~DD~I~Fr 32 (81)
.||+|++.|.
T Consensus 21 ~qP~di~~f~ 30 (41)
T 2izx_A 21 QQPPDLVEFA 30 (41)
T ss_dssp HCCSCHHHHH
T ss_pred HCCCCHHHHH
Confidence 4889988775
No 4
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=12.51 E-value=36 Score=18.49 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=8.0
Q ss_pred CCCCCceeec
Q psy17940 23 VQPDDPISFL 32 (81)
Q Consensus 23 vQ~DD~I~Fr 32 (81)
.||+|++.|-
T Consensus 29 ~qP~Di~~Fa 38 (50)
T 2kyg_A 29 QQPPDLVEFA 38 (50)
T ss_dssp HCCSCHHHHH
T ss_pred HCCCCHHHHH
Confidence 4899998875
No 5
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=11.11 E-value=42 Score=18.66 Aligned_cols=10 Identities=40% Similarity=0.664 Sum_probs=8.1
Q ss_pred CCCCCceeec
Q psy17940 23 VQPDDPISFL 32 (81)
Q Consensus 23 vQ~DD~I~Fr 32 (81)
.||+|++.|.
T Consensus 24 ~qP~Di~~Fa 33 (54)
T 2izy_A 24 QQPPDLVDFA 33 (54)
T ss_dssp HCCSCHHHHH
T ss_pred HCCCCHHHHH
Confidence 4899999875
No 6
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=10.68 E-value=45 Score=18.87 Aligned_cols=10 Identities=50% Similarity=1.049 Sum_probs=8.2
Q ss_pred CCCCCceeec
Q psy17940 23 VQPDDPISFL 32 (81)
Q Consensus 23 vQ~DD~I~Fr 32 (81)
++|.|||.|.
T Consensus 31 ~rP~DPi~~L 40 (55)
T 3g36_A 31 ERPPNPIEFL 40 (55)
T ss_dssp HCCSCHHHHH
T ss_pred hCCCCHHHHH
Confidence 4689999986
No 7
>3vrc_A Cytochrome C'; C-type cytpchrome, electron transport; HET: HEC PG4; 1.00A {Thermochromatium tepidum} PDB: 1bbh_A*
Probab=5.89 E-value=40 Score=21.61 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=8.0
Q ss_pred CCCCCceeeccc
Q psy17940 23 VQPDDPISFLEL 34 (81)
Q Consensus 23 vQ~DD~I~FrQL 34 (81)
+-|+|+|.+||=
T Consensus 3 ~~ped~i~~RQ~ 14 (131)
T 3vrc_A 3 LSPEEQIETRQA 14 (131)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 446677777774
No 8
>1l4t_A Gastrin/cholecystokinin type B receptor; hormone/growth factor receptor; NMR {Synthetic} SCOP: j.82.1.1
Probab=5.86 E-value=69 Score=16.12 Aligned_cols=7 Identities=71% Similarity=1.331 Sum_probs=5.2
Q ss_pred ceeeccc
Q psy17940 28 PISFLEL 34 (81)
Q Consensus 28 ~I~FrQL 34 (81)
||+|-||
T Consensus 21 ~IsFihL 27 (30)
T 1l4t_A 21 PISFIHL 27 (30)
T ss_dssp CHHHHHH
T ss_pred cchhhhh
Confidence 5888776
No 9
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=5.25 E-value=1.7e+02 Score=20.91 Aligned_cols=10 Identities=40% Similarity=1.055 Sum_probs=8.0
Q ss_pred CCCCCceeec
Q psy17940 23 VQPDDPISFL 32 (81)
Q Consensus 23 vQ~DD~I~Fr 32 (81)
.||||||.|.
T Consensus 41 ~~p~~~~~~~ 50 (381)
T 4din_B 41 SKPERPMKFL 50 (381)
T ss_dssp SSSSCSSTTS
T ss_pred HCCCcHHHHH
Confidence 3899999874
No 10
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=5.07 E-value=59 Score=15.86 Aligned_cols=8 Identities=25% Similarity=0.600 Sum_probs=5.2
Q ss_pred CCceeecc
Q psy17940 26 DDPISFLE 33 (81)
Q Consensus 26 DD~I~FrQ 33 (81)
.|.++|||
T Consensus 15 gdkln~rq 22 (25)
T 3mqp_B 15 GDKLNFRQ 22 (26)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 45677776
Done!