Query psy17940
Match_columns 81
No_of_seqs 102 out of 138
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 18:13:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17940.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17940hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hjqa1 a.140.3.2 (A:50-103) H 19.7 14 0.001 19.7 0.5 11 24-34 1-11 (54)
2 d2hwna1 a.31.1.1 (A:5-43) cAMP 7.0 36 0.0027 16.8 -0.4 10 23-32 19-28 (39)
3 d2ezwa1 a.31.1.1 (A:12-61) cAM 5.5 56 0.0041 17.1 -0.2 10 23-32 28-37 (50)
4 d1bbha_ a.24.3.2 (A:) Cytochro 4.2 29 0.0021 20.4 -2.4 12 23-34 3-14 (131)
5 d1v54f_ g.41.5.3 (F:) Cytochro 4.1 65 0.0047 18.7 -0.6 11 49-59 6-16 (98)
6 d1xnea_ b.122.1.6 (A:) Hypothe 4.1 2E+02 0.014 16.7 1.7 16 19-34 31-46 (113)
7 d2ccya_ a.24.3.2 (A:) Cytochro 3.8 33 0.0024 20.0 -2.4 11 24-34 3-13 (127)
8 d1e85a_ a.24.3.2 (A:) Cytochro 3.4 34 0.0025 20.0 -2.5 11 24-34 4-14 (125)
9 d1kska3 d.66.1.5 (A:1-59) Pseu 3.4 1.9E+02 0.014 14.1 1.0 15 18-32 36-50 (59)
10 d1vioa2 d.66.1.5 (A:0-57) Pseu 3.3 2E+02 0.015 14.0 1.0 15 18-32 37-51 (58)
No 1
>d2hjqa1 a.140.3.2 (A:50-103) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=19.70 E-value=14 Score=19.69 Aligned_cols=11 Identities=55% Similarity=0.887 Sum_probs=9.2
Q ss_pred CCCCceeeccc
Q psy17940 24 QPDDPISFLEL 34 (81)
Q Consensus 24 Q~DD~I~FrQL 34 (81)
|-||||+|..-
T Consensus 1 qkddpinytes 11 (54)
T d2hjqa1 1 QKDDPINYTES 11 (54)
T ss_dssp SSCCCSCCCHH
T ss_pred CCCCcccccHH
Confidence 56999999875
No 2
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.97 E-value=36 Score=16.80 Aligned_cols=10 Identities=40% Similarity=0.664 Sum_probs=7.5
Q ss_pred CCCCCceeec
Q psy17940 23 VQPDDPISFL 32 (81)
Q Consensus 23 vQ~DD~I~Fr 32 (81)
.||+|.|.|-
T Consensus 19 ~qP~di~~fa 28 (39)
T d2hwna1 19 QQPPDLVDFA 28 (39)
T ss_dssp HCCSCHHHHH
T ss_pred HCCchHHHHH
Confidence 4889988763
No 3
>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type I-alpha regulatory subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.51 E-value=56 Score=17.09 Aligned_cols=10 Identities=40% Similarity=1.125 Sum_probs=8.1
Q ss_pred CCCCCceeec
Q psy17940 23 VQPDDPISFL 32 (81)
Q Consensus 23 vQ~DD~I~Fr 32 (81)
..||.||.|.
T Consensus 28 ~rPe~P~~FL 37 (50)
T d2ezwa1 28 ARPERPMAFL 37 (50)
T ss_dssp CCCSCHHHHH
T ss_pred cCCCCHHHHH
Confidence 4789999885
No 4
>d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId: 1049]}
Probab=4.18 E-value=29 Score=20.44 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=7.4
Q ss_pred CCCCCceeeccc
Q psy17940 23 VQPDDPISFLEL 34 (81)
Q Consensus 23 vQ~DD~I~FrQL 34 (81)
+.|+|+|.+||=
T Consensus 3 ~~ped~i~~Rq~ 14 (131)
T d1bbha_ 3 LSPEEQIETRQA 14 (131)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 456666776664
No 5
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.15 E-value=65 Score=18.72 Aligned_cols=11 Identities=18% Similarity=-0.245 Sum_probs=7.0
Q ss_pred hHhHHHHHhcc
Q psy17940 49 FELSLNQALIG 59 (81)
Q Consensus 49 ~e~dL~~A~g~ 59 (81)
+..|+.+|||-
T Consensus 6 iptd~EqATGl 16 (98)
T d1v54f_ 6 VPTDEEQATGL 16 (98)
T ss_dssp CCCHHHHCCHH
T ss_pred CCChHHHhhhH
Confidence 35567777764
No 6
>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus furiosus [TaxId: 2261]}
Probab=4.11 E-value=2e+02 Score=16.74 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=12.8
Q ss_pred CCCCCCCCCceeeccc
Q psy17940 19 PGHKVQPDDPISFLEL 34 (81)
Q Consensus 19 ~~~~vQ~DD~I~FrQL 34 (81)
+-..+++.|.|.|..+
T Consensus 31 kr~~ik~GD~I~F~~~ 46 (113)
T d1xnea_ 31 QLKDIKRGDKIIFNDL 46 (113)
T ss_dssp TTTTCCTTCEEEETTT
T ss_pred hHhhCCCCCEEEEEee
Confidence 4557899999999766
No 7
>d2ccya_ a.24.3.2 (A:) Cytochrome c' {Rhodospirillum molischianum [TaxId: 1083]}
Probab=3.76 E-value=33 Score=19.97 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=7.0
Q ss_pred CCCCceeeccc
Q psy17940 24 QPDDPISFLEL 34 (81)
Q Consensus 24 Q~DD~I~FrQL 34 (81)
.|+|+|.+||=
T Consensus 3 ~ped~I~~Rq~ 13 (127)
T d2ccya_ 3 KPEDLLKLRQG 13 (127)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 45667777764
No 8
>d1e85a_ a.24.3.2 (A:) Cytochrome c' {Alcaligenes sp. [TaxId: 512]}
Probab=3.44 E-value=34 Score=19.99 Aligned_cols=11 Identities=18% Similarity=0.682 Sum_probs=7.7
Q ss_pred CCCCceeeccc
Q psy17940 24 QPDDPISFLEL 34 (81)
Q Consensus 24 Q~DD~I~FrQL 34 (81)
+|+|+|.+||-
T Consensus 4 ~~ed~I~~Rq~ 14 (125)
T d1e85a_ 4 KPEDAVKYRQS 14 (125)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 46677777775
No 9
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.41 E-value=1.9e+02 Score=14.13 Aligned_cols=15 Identities=13% Similarity=0.450 Sum_probs=9.6
Q ss_pred CCCCCCCCCCceeec
Q psy17940 18 KPGHKVQPDDPISFL 32 (81)
Q Consensus 18 ~~~~~vQ~DD~I~Fr 32 (81)
++...|.|+|.|.|.
T Consensus 36 ~~~~~V~~~d~I~~d 50 (59)
T d1kska3 36 NAAFKLLPEHDVAYD 50 (59)
T ss_dssp CTTCEECTTCCEEET
T ss_pred cCCcCcCCCCEEEEC
Confidence 344456777777765
No 10
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=3.30 E-value=2e+02 Score=14.02 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=9.7
Q ss_pred CCCCCCCCCCceeec
Q psy17940 18 KPGHKVQPDDPISFL 32 (81)
Q Consensus 18 ~~~~~vQ~DD~I~Fr 32 (81)
++...+.++|.|.|.
T Consensus 37 ~~~~~v~~~d~I~~~ 51 (58)
T d1vioa2 37 SGSVQISQEDEIYFE 51 (58)
T ss_dssp CTTCEECTTSCEEET
T ss_pred CCCCCCCCCCEEEEC
Confidence 344566777878774
Done!