RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17940
         (81 letters)



>gnl|CDD|219533 pfam07718, Coatamer_beta_C, Coatamer beta C-terminal region.
          This family is found at the N-terminus of the coatamer
          beta subunit proteins (Beta-coat proteins). This
          C-terminal domain probably adapts the function of the
          N-terminal pfam01602 domain.
          Length = 279

 Score = 38.6 bits (90), Expect = 8e-05
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 7/58 (12%)

Query: 23 VQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGSGPAAAQTQAADPSGASKLNK 80
          V PD PISF +LS  R ++    E+ F  SL  AL G   AA+       S +SKL+K
Sbjct: 1  VSPDKPISFSQLSPKRFADNNMGEDRFPSSLAAALGGEESAAS-------STSSKLHK 51


>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional.
          Length = 659

 Score = 27.7 bits (61), Expect = 0.67
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 6   SQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGSGPAAA 65
           S  +  TQ+A   P  K   D P ++        S F G   + E+      + SG  AA
Sbjct: 57  SATKTVTQEASRAPRSK--LDLPAAY--------SSFRGITPISEVRERYGYLASGDRAA 106

Query: 66  QTQA 69
           Q   
Sbjct: 107 QATV 110


>gnl|CDD|181433 PRK08455, fliL, flagellar basal body-associated protein FliL;
           Reviewed.
          Length = 182

 Score = 24.6 bits (54), Expect = 6.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 2   LEAKSQEEASTQKAKEK 18
           L +K+ EE ST K KE+
Sbjct: 137 LSSKTVEEVSTNKGKER 153


>gnl|CDD|237893 PRK15063, PRK15063, isocitrate lyase; Provisional.
          Length = 428

 Score = 24.4 bits (54), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 42  FGGTENVFELSLNQALIGSGPAA 64
           FGG  N FEL   +A+I +G A 
Sbjct: 157 FGGVLNAFELM--KAMIEAGAAG 177


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.302    0.120    0.316 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,698,672
Number of extensions: 272851
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 8
Length of query: 81
Length of database: 10,937,602
Length adjustment: 50
Effective length of query: 31
Effective length of database: 8,719,902
Effective search space: 270316962
Effective search space used: 270316962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 53 (24.5 bits)