RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17940
         (81 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
          synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.6 bits (66), Expect = 0.081
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 17/61 (27%)

Query: 4  AKSQEEASTQKAKEKPGHKVQPDDPISFLEL---------SSARGSEFGGTENVFELSLN 54
           K   E +   A +        D+P +  EL         S    S+ G  + V  L L 
Sbjct: 38 NKILPEPTEGFAAD--------DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89

Query: 55 Q 55
          +
Sbjct: 90 E 90


>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus,
          nuclear protein; 1.20A {Homo sapiens}
          Length = 55

 Score = 24.6 bits (54), Expect = 1.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 22 KVQPDDPISFL 32
          K +P +PI FL
Sbjct: 30 KERPPNPIEFL 40


>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
          electron transferase, oxidoreductase; HET: FAD; 1.70A
          {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
          1e1m_A* 1e1n_A* 1e6e_A*
          Length = 460

 Score = 25.2 bits (55), Expect = 2.8
 Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 3/24 (12%)

Query: 56 ALIGSGPA---AAQTQAADPSGAS 76
           ++GSGPA    AQ      S A 
Sbjct: 10 CVVGSGPAGFYTAQHLLKHHSRAH 33


>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
           amidotransferase, ammonia assimilation, iron, zymogen;
           HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
          Length = 456

 Score = 24.4 bits (54), Expect = 5.1
 Identities = 7/14 (50%), Positives = 10/14 (71%), Gaps = 3/14 (21%)

Query: 56  ALIGSGPA---AAQ 66
            +IG+GPA   AA+
Sbjct: 126 GVIGAGPAGLAAAE 139


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.302    0.120    0.316 

Gapped
Lambda     K      H
   0.267   0.0835    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,049,612
Number of extensions: 47752
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 6
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 51 (23.2 bits)