RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17940
         (81 letters)



>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of
          mitochondrial p450 systems {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 230

 Score = 24.1 bits (51), Expect = 2.2
 Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 3/22 (13%)

Query: 56 ALIGSGPA---AAQTQAADPSG 74
           ++GSGPA    AQ      S 
Sbjct: 5  CVVGSGPAGFYTAQHLLKHHSR 26


>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal
          domain {Haemophilus influenzae [TaxId: 727]}
          Length = 58

 Score = 23.1 bits (50), Expect = 2.3
 Identities = 3/15 (20%), Positives = 7/15 (46%)

Query: 17 EKPGHKVQPDDPISF 31
          +    ++  +D I F
Sbjct: 36 KSGSVQISQEDEIYF 50


>d2bsqe1 a.43.1.8 (E:2-70) Trafficking protein A {Neisseria
          gonorrhoeae [TaxId: 485]}
          Length = 69

 Score = 22.4 bits (48), Expect = 5.8
 Identities = 5/24 (20%), Positives = 10/24 (41%)

Query: 23 VQPDDPISFLELSSARGSEFGGTE 46
           +    +    + ++ G E GG E
Sbjct: 39 AKAQQTVRLGSMLASIGQEIGGVE 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.302    0.120    0.316 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 241,397
Number of extensions: 8102
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 3
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 47 (22.1 bits)