BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17941
(679 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q5H|A Chain A, Crystal Structure Of Apo-Wildtype Glycyl-Trna Synthetase
Length = 691
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/680 (59%), Positives = 510/680 (75%), Gaps = 2/680 (0%)
Query: 1 MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAP 60
M E LAPLR AV++QGD+VR LK + AP++DV KAVAELK RK+VL+ +EL L P
Sbjct: 1 MDGAGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQP 60
Query: 61 FVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQ 120
DRAKMED LKRRFFYDQ+F+IYGG+SG YDFGP+GCALK N++ WRQ F+ EEQ
Sbjct: 61 KDDIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQ 120
Query: 121 MLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQS 180
+LE+DC++LT EPVLK SGHVD+FAD MVKD+K GECFR DHL+KAHL+KL ++ K
Sbjct: 121 ILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVE 180
Query: 181 VKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKG 240
K E ++ +LD + E+ D+ YN+KSP+T NDLS P+ FNLMF T IGP G + G
Sbjct: 181 KKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPG 240
Query: 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 300
YLRPETAQGIF+NFKRLLEFN G+LPFAAAQIGN+FRNEISPRSGLIRVREFTMAEIEHF
Sbjct: 241 YLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 300
Query: 301 CDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARI 360
DP++K H KF +V + LYSA Q+ G+ A ++ +G+AV ++ N LGYF+ RI
Sbjct: 301 VDPSEKDHPKFQNVADLHLY-LYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRI 359
Query: 361 QKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHF 420
++ VGI P+KLRFRQHM NEMAHYACDCWDAE TSYGW+E VGCADRS YDL+ H
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419
Query: 421 KATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEES 480
+AT V L AEK L EP+T +V+ +KG IGK +KKDAK + + LA D ++ +E
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479
Query: 481 LNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNF 540
LN G++ + + K F LTKDMI++K+ KT +VEE++P+VIEPSFG+GRIMY +FEH F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 539
Query: 541 KMRDGDEQRTYXXXXXXXXXXXXSILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGS 600
+R+GDEQRT+ S+LPLS N EF PF+K LS L+++G+S KVDDS GS
Sbjct: 540 HVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGS 599
Query: 601 IGKRYARTDEIAIPFGITIDFDTL-KEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659
IG+RYARTDEI + FG+TIDFDT+ K PH+ TLR+RDSM Q+R +++E+ S+++DL+
Sbjct: 600 IGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGN 659
Query: 660 ITWEDVQSKYPKFEAQEGSK 679
ITW DV+++YP FE QE K
Sbjct: 660 ITWADVEARYPLFEGQETGK 679
>pdb|2PME|A Chain A, The Apo Crystal Structure Of The Glycyl-Trna Synthetase
pdb|2ZT5|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Atp)
pdb|2ZT6|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ampcpp
pdb|2ZT7|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Glycine And Atp
pdb|2ZT8|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Gly-Amp Analog
pdb|2ZXF|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Ap4a)
Length = 693
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/680 (59%), Positives = 510/680 (75%), Gaps = 2/680 (0%)
Query: 1 MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAP 60
M E LAPLR AV++QGD+VR LK + AP++DV KAVAELK RK+VL+ +EL L P
Sbjct: 1 MDGAGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQP 60
Query: 61 FVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQ 120
DRAKMED LKRRFFYDQ+F+IYGG+SG YDFGP+GCALK N++ WRQ F+ EEQ
Sbjct: 61 KDDIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQ 120
Query: 121 MLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQS 180
+LE+DC++LT EPVLK SGHVD+FAD MVKD+K GECFR DHL+KAHL+KL ++ K
Sbjct: 121 ILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVE 180
Query: 181 VKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKG 240
K E ++ +LD + E+ D+ YN+KSP+T NDLS P+ FNLMF T IGP G + G
Sbjct: 181 KKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPG 240
Query: 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 300
YLRPETAQGIF+NFKRLLEFN G+LPFAAAQIGN+FRNEISPRSGLIRVREFTMAEIEHF
Sbjct: 241 YLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 300
Query: 301 CDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARI 360
DP++K H KF +V + LYSA Q+ G+ A ++ +G+AV ++ N LGYF+ RI
Sbjct: 301 VDPSEKDHPKFQNVADLHLY-LYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRI 359
Query: 361 QKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHF 420
++ VGI P+KLRFRQHM NEMAHYACDCWDAE TSYGW+E VGCADRS YDL+ H
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419
Query: 421 KATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEES 480
+AT V L AEK L EP+T +V+ +KG IGK +KKDAK + + LA D ++ +E
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479
Query: 481 LNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNF 540
LN G++ + + K F LTKDMI++K+ KT +VEE++P+VIEPSFG+GRIMY +FEH F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 539
Query: 541 KMRDGDEQRTYXXXXXXXXXXXXSILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGS 600
+R+GDEQRT+ S+LPLS N EF PF+K LS L+++G+S KVDDS GS
Sbjct: 540 HVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGS 599
Query: 601 IGKRYARTDEIAIPFGITIDFDTL-KEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659
IG+RYARTDEI + FG+TIDFDT+ K PH+ TLR+RDSM Q+R +++E+ S+++DL+
Sbjct: 600 IGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGN 659
Query: 660 ITWEDVQSKYPKFEAQEGSK 679
ITW DV+++YP FE QE K
Sbjct: 660 ITWADVEARYPLFEGQETGK 679
>pdb|2Q5I|A Chain A, Crystal Structure Of Apo S581l Glycyl-Trna Synthetase
Mutant
Length = 691
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/680 (58%), Positives = 509/680 (74%), Gaps = 2/680 (0%)
Query: 1 MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAP 60
M E LAPLR AV++QGD+VR LK + AP++DV KAVAELK RK+VL+ +EL L P
Sbjct: 1 MDGAGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQP 60
Query: 61 FVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQ 120
DRAKMED LKRRFFYDQ+F+IYGG+SG YDFGP+GCALK N++ WRQ F+ EEQ
Sbjct: 61 KDDIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQ 120
Query: 121 MLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQS 180
+LE+DC++LT EPVLK SGHVD+FAD MVKD+K GECFR DHL+KAHL+KL ++ K
Sbjct: 121 ILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVE 180
Query: 181 VKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKG 240
K E ++ +LD + E+ D+ YN+KSP+T NDLS P+ FNLMF T IGP G + G
Sbjct: 181 KKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPG 240
Query: 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 300
YLRPETAQGIF+NFKRLLEFN G+LPFAAAQIGN+FRNEISPRSGLIRVREFTMAEIEHF
Sbjct: 241 YLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 300
Query: 301 CDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARI 360
DP++K H KF +V + LYSA Q+ G+ A ++ +G+AV ++ N LGYF+ RI
Sbjct: 301 VDPSEKDHPKFQNVADLHLY-LYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRI 359
Query: 361 QKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHF 420
++ VGI P+KLRFRQHM NEMAHYACDCWDAE TSYGW+E VGCADRS YDL+ H
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419
Query: 421 KATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEES 480
+AT V L AEK L EP+T +V+ +KG IGK +KKDAK + + LA D ++ +E
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479
Query: 481 LNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNF 540
LN G++ + + K F LTKDMI++K+ KT +VEE++P+VIEPSFG+GRIMY +FEH F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 539
Query: 541 KMRDGDEQRTYXXXXXXXXXXXXSILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGS 600
+R+GDEQRT+ S+LPLS N EF PF+K L L+++G+S KVDDS GS
Sbjct: 540 HVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELLEALTRHGVSHKVDDSSGS 599
Query: 601 IGKRYARTDEIAIPFGITIDFDTL-KEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659
IG+RYARTDEI + FG+TIDFDT+ K PH+ TLR+RDSM Q+R +++E+ S+++DL+
Sbjct: 600 IGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGN 659
Query: 660 ITWEDVQSKYPKFEAQEGSK 679
ITW DV+++YP FE QE K
Sbjct: 660 ITWADVEARYPLFEGQETGK 679
>pdb|2PMF|A Chain A, The Crystal Structure Of A Human Glycyl-trna Synthetase
Mutant
Length = 693
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/680 (58%), Positives = 509/680 (74%), Gaps = 2/680 (0%)
Query: 1 MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAP 60
M E LAPLR AV++QGD+VR LK + AP++DV KAVAELK RK+VL+ +EL L P
Sbjct: 1 MDGAGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQP 60
Query: 61 FVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQ 120
DRAKMED LKRRFFYDQ+F+IYGG+SG YDFGP+GCALK N++ WRQ F+ EEQ
Sbjct: 61 KDDIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQ 120
Query: 121 MLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQS 180
+LE+DC++LT EPVLK SGHVD+FAD MVKD+K GECFR DHL+KAHL+KL ++ K
Sbjct: 121 ILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVE 180
Query: 181 VKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKG 240
K E ++ +LD + E+ D+ YN+KSP+T NDLS P+ FNLMF T IGP G + G
Sbjct: 181 KKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPG 240
Query: 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 300
YLRPETAQGIF+NFKRLLEFN G+LPFAAAQIGN+FRNEISPRSGLIRVREFTMAEIEHF
Sbjct: 241 YLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 300
Query: 301 CDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARI 360
DP++K H KF +V + LYSA Q+ G+ A ++ +G+AV ++ N LGYF+ RI
Sbjct: 301 VDPSEKDHPKFQNVADLHLY-LYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRI 359
Query: 361 QKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHF 420
++ VGI P+KLRFRQHM NEMAHYACDCWDAE TSYGW+E VGCADRS YDL+ H
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419
Query: 421 KATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEES 480
+AT V L AEK L EP+T +V+ +KG IGK +KKDAK + + LA D ++ +E
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479
Query: 481 LNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNF 540
LN G++ + + K F LTKDMI++K+ KT +VEE++P+VIEPSF +GRIMY +FEH F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFRLGRIMYTVFEHTF 539
Query: 541 KMRDGDEQRTYXXXXXXXXXXXXSILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGS 600
+R+GDEQRT+ S+LPLS N EF PF+K LS L+++G+S KVDDS GS
Sbjct: 540 HVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGS 599
Query: 601 IGKRYARTDEIAIPFGITIDFDTL-KEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659
IG+RYARTDEI + FG+TIDFDT+ K PH+ TLR+RDSM Q+R +++E+ S+++DL+
Sbjct: 600 IGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGN 659
Query: 660 ITWEDVQSKYPKFEAQEGSK 679
ITW DV+++YP FE QE K
Sbjct: 660 ITWADVEARYPLFEGQETGK 679
>pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
Thermophilus
pdb|1ATI|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
Thermophilus
Length = 505
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/354 (35%), Positives = 166/354 (46%), Gaps = 48/354 (13%)
Query: 73 LLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLE-VDCSILTL 131
L KRR F QS IYGG+ G YD+GP+G LK N+ AW + V E +E +D S+LT
Sbjct: 11 LCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTH 70
Query: 132 EPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIK 191
VL SGH FAD MV + T + +RLDHL+K E++ V+EE +++
Sbjct: 71 RLVLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQ 130
Query: 192 LDGMSKNEMDDVLKKYNIKSPLT--KNDLSEPMEFNLMFATQIGPSGL--IKGYLRPETA 247
+ + + P + D + P FN+MF GP G + YLRPETA
Sbjct: 131 AMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETA 190
Query: 248 QGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKS 307
QGIFVNFK +L+ S +L F AQIG AFRNEI+PR+ + RVREF EIE+F P +
Sbjct: 191 QGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDE 250
Query: 308 HAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISV 367
+ VE ER+ K+ +
Sbjct: 251 YWHRYWVE-------------------ERL------------------------KWWQEM 267
Query: 368 GIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFK 421
G+ E L Q AHYA D +G +E G A R+ +DL H K
Sbjct: 268 GLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTK 321
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 11/149 (7%)
Query: 517 IIPSVIEPSFGIGRIMYALFEHNFKMRD--GDEQRTYXXXXXXXXXXXXSILPLSSN-PE 573
+P VIEPS G+ R + AL F + E+R +++PL N PE
Sbjct: 353 FVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPE 412
Query: 574 FQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPH----- 628
+ K L + L G+ + + G+IGK Y R DE+ PF +T+D+DT+ +
Sbjct: 413 ITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTR 472
Query: 629 ---SVTLRERDSMTQVRVKVNEVASVIKD 654
+VT+R+RD+M Q+R+ V+E+ +++
Sbjct: 473 LKDTVTVRDRDTMEQIRLHVDELEGFLRE 501
>pdb|1GGM|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
With Glycyl-Adenylate
pdb|1GGM|B Chain B, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
With Glycyl-Adenylate
pdb|1B76|A Chain A, Glycyl-trna Synthetase From Thermus Thermophilus Complexed
With Atp
pdb|1B76|B Chain B, Glycyl-trna Synthetase From Thermus Thermophilus Complexed
With Atp
Length = 442
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 92/205 (44%), Gaps = 45/205 (21%)
Query: 219 SEPMEFNLMFATQIGPSGL--IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAF 276
+ P FN+MF GP G + YLRPETAQGIFVNFK +L+ S +L F AQIG AF
Sbjct: 97 TPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAF 156
Query: 277 RNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAER 336
RNEI+PR+ + RVREF EIE+F P + + VE ER
Sbjct: 157 RNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVE-------------------ER 197
Query: 337 ITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAEC 396
+ K+ +G+ E L Q AHYA D
Sbjct: 198 L------------------------KWWQEMGLSRENLVPYQQPPESSAHYAKATVDILY 233
Query: 397 LTSYGWVECVGCADRSAYDLTQHFK 421
+G +E G A R+ +DL H K
Sbjct: 234 RFPHGSLELEGIAQRTDFDLGSHTK 258
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 11/149 (7%)
Query: 517 IIPSVIEPSFGIGRIMYALFEHNFKMRD--GDEQRTYXXXXXXXXXXXXSILPLSSN-PE 573
+P VIEPS G+ R + AL F + E+R +++PL N PE
Sbjct: 290 FVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPE 349
Query: 574 FQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPH----- 628
+ K L + L G+ + + G+IGK Y R DE+ PF +T+D+DT+ +
Sbjct: 350 ITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTR 409
Query: 629 ---SVTLRERDSMTQVRVKVNEVASVIKD 654
+VT+R+RD+M Q+R+ V+E+ +++
Sbjct: 410 LKDTVTVRDRDTMEQIRLHVDELEGFLRE 438
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 73 LLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLE-VDCSILTL 131
L KRR F QS IYGG+ G YD+GP+G LK N+ AW + V E +E +D S+LT
Sbjct: 11 LCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTH 70
Query: 132 EPVLKASGHVDRFADLMVKDLK 153
VL SGH FAD MV + K
Sbjct: 71 RLVLHYSGHEATFADPMVDNAK 92
>pdb|1G5I|A Chain A, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|B Chain B, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|C Chain C, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|D Chain D, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
Length = 454
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 67 RAKMEDLLKRRFFYD---QSFSIYGGISGQY-DFGPMGCALKTNMLSA-WRQFFVLEEQM 121
R + DL +RR F Q S +SG + FGP+G L+ N+ S W V EQ+
Sbjct: 24 REALVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVFREQV 83
Query: 122 LEVD 125
VD
Sbjct: 84 FAVD 87
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 240 GYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFR---NEISPRSGLIRVREFTMAE 296
G LR G ++ L+ + +LPF AQIG F N S + RV E T A
Sbjct: 137 GKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEAS 196
Query: 297 IEHFCDPTDKS 307
+ F PT S
Sbjct: 197 LVWFT-PTRTS 206
>pdb|1G5H|A Chain A, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5H|B Chain B, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5H|C Chain C, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5H|D Chain D, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
Length = 454
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 67 RAKMEDLLKRRFFYD---QSFSIYGGISGQY-DFGPMGCALKTNMLSA-WRQFFVLEEQM 121
R + DL +RR F Q S +SG + FGP+G L+ N+ S W V EQ+
Sbjct: 24 REALVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSXVVFREQV 83
Query: 122 LEVD 125
VD
Sbjct: 84 FAVD 87
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 240 GYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFR---NEISPRSGLIRVREFTMAE 296
G LR G ++ L+ + +LPF AQIG F N S + RV E T A
Sbjct: 137 GKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEAS 196
Query: 297 IEHFCDPTDKS 307
+ F PT S
Sbjct: 197 LVWFT-PTRTS 206
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 259 EFNS-GRLPFAAAQIGNAFRNEISPRSGLIRVREFTM 294
E NS RLP QI +R+E RSGL+R REF M
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIM 157
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 260 FNSG-----RLPFAAAQIGNAFRNEISPR-SGLIRVREFTMAEIEHFC 301
FN G LP A+ G+ RNE S GL+RVR FT + FC
Sbjct: 341 FNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC 388
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
Length = 401
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 260 FNSG-----RLPFAAAQIGNAFRNEISPR-SGLIRVREFTMAEIEHFC 301
FN G LP A+ G+ RNE S GL+RVR FT + FC
Sbjct: 100 FNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC 147
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 564 SILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDT 623
I+P++ + + + + L EL G+ +DD +G + IP+ I + D
Sbjct: 549 QIIPVNVDLHYD-YARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVG-DK 606
Query: 624 LKEPHSVTLRERDSMTQVRVKVNE-VASVIKDLSLAK 659
E + V +R+ S Q V+ +E + +++ ++ L K
Sbjct: 607 EVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKK 643
>pdb|1FYJ|A Chain A, Solution Structure Of Multi-Functional Peptide Motif-1
Present In Human Glutamyl-Prolyl Trna Synthetase (Eprs)
Length = 57
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 17 VKEQGDIVRALKAEGAPELDVKKAVAEL 44
V QGD+VR LKA+ AP+ DV AV +L
Sbjct: 9 VAVQGDVVRELKAKKAPKEDVDAAVKQL 36
>pdb|3IKL|A Chain A, Crystal Structure Of Pol Gb Delta-I4.
pdb|3IKL|B Chain B, Crystal Structure Of Pol Gb Delta-I4
Length = 459
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFR---NEISPRSGLIRVREFTM 294
+G LR G ++ L+ + RLP+ AQIG F + R+G+ + E T
Sbjct: 145 FRGGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTE 204
Query: 295 AEIEHFCDP 303
A + F P
Sbjct: 205 ASLVWFTPP 213
>pdb|3IKM|B Chain B, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|C Chain C, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|E Chain E, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|F Chain F, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
Length = 427
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 240 GYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFR---NEISPRSGLIRVREFTMAE 296
G LR G ++ L+ + RLP+ AQIG F + R+G+ + E T A
Sbjct: 121 GKLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEAS 180
Query: 297 IEHFCDP 303
+ F P
Sbjct: 181 LVWFTPP 187
>pdb|2G4C|A Chain A, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
pdb|2G4C|B Chain B, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
pdb|2G4C|C Chain C, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
pdb|2G4C|D Chain D, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
Length = 474
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 240 GYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFR---NEISPRSGLIRVREFTMAE 296
G LR G ++ L+ + RLP+ AQIG F + R+G+ + E T A
Sbjct: 168 GKLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEAS 227
Query: 297 IEHFCDP 303
+ F P
Sbjct: 228 LVWFTPP 234
>pdb|4HTL|A Chain A, Lmo2764 Protein, A Putative N-Acetylmannosamine Kinase,
From Listeria Monocytogenes
Length = 297
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 276 FRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAE 335
F N R G R EF E P K++ ETT +VL ++ G+P E
Sbjct: 140 FSNGELVRGGRFRAGEFGYXFSER---PGAFRPGKYTLNETTTXLVLRRQYAELTGRPLE 196
Query: 336 RITIGEAVRSNLVANETL 353
IT GE + +N A++ +
Sbjct: 197 EIT-GEEIFANYDAHDAV 213
>pdb|3T9Z|A Chain A, A. Fulgidus Glnk3, Ligand-Free
pdb|3T9Z|B Chain B, A. Fulgidus Glnk3, Ligand-Free
pdb|3T9Z|C Chain C, A. Fulgidus Glnk3, Ligand-Free
pdb|3T9Z|D Chain D, A. Fulgidus Glnk3, Ligand-Free
pdb|3T9Z|E Chain E, A. Fulgidus Glnk3, Ligand-Free
pdb|3T9Z|F Chain F, A. Fulgidus Glnk3, Ligand-Free
pdb|3TA0|A Chain A, A. Fulgidus Glnk3, Mgatp Complex
pdb|3TA0|B Chain B, A. Fulgidus Glnk3, Mgatp Complex
pdb|3TA0|C Chain C, A. Fulgidus Glnk3, Mgatp Complex
pdb|3TA0|D Chain D, A. Fulgidus Glnk3, Mgatp Complex
pdb|3TA0|E Chain E, A. Fulgidus Glnk3, Mgatp Complex
pdb|3TA0|F Chain F, A. Fulgidus Glnk3, Mgatp Complex
pdb|3TA1|A Chain A, A. Fulgidus Glnk3, Mgadp Complex
pdb|3TA1|B Chain B, A. Fulgidus Glnk3, Mgadp Complex
pdb|3TA1|C Chain C, A. Fulgidus Glnk3, Mgadp Complex
pdb|3TA1|D Chain D, A. Fulgidus Glnk3, Mgadp Complex
pdb|3TA1|E Chain E, A. Fulgidus Glnk3, Mgadp Complex
pdb|3TA1|F Chain F, A. Fulgidus Glnk3, Mgadp Complex
pdb|3TA2|A Chain A, A. Fulgidus Glnk3, Mgatp2-Og Complex
pdb|3TA2|B Chain B, A. Fulgidus Glnk3, Mgatp2-Og Complex
pdb|3TA2|C Chain C, A. Fulgidus Glnk3, Mgatp2-Og Complex
Length = 118
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 514 VEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQ 548
VE I+ S FG GRI E + K+R GDE+
Sbjct: 74 VEAIVSSARTGKFGDGRIFVIPVEKSVKIRTGDEE 108
>pdb|2HIS|A Chain A, Cellulomonas Fimi XylanaseCELLULASE DOUBLE MUTANT
E127aH205N WITH COVALENT CELLOBIOSE
Length = 312
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 376 FRQHMGN---EMAHYACDCWDAE---CLTSYGWVECVGCADRSAYDLTQHFKATGVRL 427
F+Q +GN E A A D C+ Y VE + S YDL + FKA GV L
Sbjct: 141 FQQKLGNGYIETAFRAARAADPTAKLCINDYN-VEGINAKSNSLYDLVKDFKARGVPL 197
>pdb|1FH7|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Deoxynojirimycin
pdb|1FH8|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Isofagomine Inhibitor
pdb|1FH9|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Lactam Oxime Inhibitor
pdb|1FHD|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Imidazole Inhibitor
pdb|1J01|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Isofagomine Lactam
pdb|1EXP|A Chain A, Beta-1,4-Glycanase Cex-Cd
pdb|2EXO|A Chain A, Crystal Structure Of The Catalytic Domain Of The Beta-1,4-
Glycanase Cex From Cellulomonas Fimi
pdb|2XYL|A Chain A, Cellulomonas Fimi XylanaseCELLULASE COMPLEXED WITH
2-Deoxy- 2-Fluoro-Xylobiose
Length = 312
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 376 FRQHMGN---EMAHYACDCWDAE---CLTSYGWVECVGCADRSAYDLTQHFKATGVRL 427
F+Q +GN E A A D C+ Y VE + S YDL + FKA GV L
Sbjct: 141 FQQKLGNGYIETAFRAARAADPTAKLCINDYN-VEGINAKSNSLYDLVKDFKARGVPL 197
>pdb|3CUF|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellobiose-Like Isofagomine
pdb|3CUG|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotetraose-Like Isofagomine
pdb|3CUH|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotriose-Like Isofagomine
pdb|3CUI|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylotetraose
pdb|3CUJ|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylopentaose
Length = 315
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 376 FRQHMGN---EMAHYACDCWDAE---CLTSYGWVECVGCADRSAYDLTQHFKATGVRL 427
F+Q +GN E A A D C+ Y VE + S YDL + FKA GV L
Sbjct: 141 FQQKLGNGYIETAFRAARAADPTAKLCINDYN-VEGINAKSNSLYDLVKDFKARGVPL 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,068,155
Number of Sequences: 62578
Number of extensions: 775331
Number of successful extensions: 1733
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1696
Number of HSP's gapped (non-prelim): 39
length of query: 679
length of database: 14,973,337
effective HSP length: 105
effective length of query: 574
effective length of database: 8,402,647
effective search space: 4823119378
effective search space used: 4823119378
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)