Query psy17941
Match_columns 679
No_of_seqs 386 out of 2026
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 18:14:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02734 glycyl-tRNA synthetas 100.0 8E-155 2E-159 1301.4 51.0 669 3-678 2-683 (684)
2 KOG2298|consensus 100.0 7E-149 1E-153 1169.3 32.2 596 59-663 4-599 (599)
3 TIGR00389 glyS_dimeric glycyl- 100.0 3E-131 8E-136 1097.3 41.9 547 66-655 2-550 (551)
4 COG0423 GRS1 Glycyl-tRNA synth 100.0 5E-130 1E-134 1050.1 35.4 552 65-662 4-557 (558)
5 PRK14894 glycyl-tRNA synthetas 100.0 5E-108 1E-112 885.3 33.6 437 67-657 6-538 (539)
6 PRK04173 glycyl-tRNA synthetas 100.0 3E-89 6.4E-94 759.3 38.0 443 67-655 4-455 (456)
7 TIGR00409 proS_fam_II prolyl-t 100.0 2.2E-61 4.7E-66 548.3 32.7 469 69-653 21-566 (568)
8 PRK09194 prolyl-tRNA synthetas 100.0 1.3E-58 2.9E-63 528.8 31.1 466 69-653 21-561 (565)
9 PRK12325 prolyl-tRNA synthetas 100.0 3.5E-53 7.6E-58 470.4 33.1 395 69-653 21-438 (439)
10 KOG2324|consensus 100.0 6E-52 1.3E-56 425.0 24.9 373 70-654 27-428 (457)
11 PRK14799 thrS threonyl-tRNA sy 100.0 8.2E-49 1.8E-53 441.7 31.0 391 70-659 140-534 (545)
12 PRK03991 threonyl-tRNA synthet 100.0 8.5E-48 1.8E-52 439.3 33.5 404 70-672 199-612 (613)
13 COG0442 ProS Prolyl-tRNA synth 100.0 3.1E-49 6.6E-54 435.7 20.2 452 69-652 21-498 (500)
14 PRK08661 prolyl-tRNA synthetas 100.0 4.4E-48 9.6E-53 433.2 29.0 365 68-657 16-388 (477)
15 TIGR00408 proS_fam_I prolyl-tR 100.0 3.7E-48 8E-53 432.9 28.0 362 70-657 12-382 (472)
16 PLN02837 threonine-tRNA ligase 100.0 1E-47 2.2E-52 441.9 31.7 389 70-660 219-612 (614)
17 TIGR00418 thrS threonyl-tRNA s 100.0 5.6E-47 1.2E-51 434.6 35.6 385 70-654 172-561 (563)
18 PRK12305 thrS threonyl-tRNA sy 100.0 1.7E-47 3.8E-52 439.7 31.2 391 70-659 178-572 (575)
19 PLN02908 threonyl-tRNA synthet 100.0 1.7E-47 3.6E-52 445.5 30.3 371 90-658 310-684 (686)
20 PRK12444 threonyl-tRNA synthet 100.0 1.1E-46 2.3E-51 437.4 36.6 387 70-659 247-638 (639)
21 cd00774 GlyRS-like_core Glycyl 100.0 2.6E-48 5.7E-53 402.5 15.9 250 71-417 2-254 (254)
22 PRK00413 thrS threonyl-tRNA sy 100.0 1.4E-44 3.1E-49 420.6 31.3 373 90-660 259-636 (638)
23 COG0124 HisS Histidyl-tRNA syn 100.0 1.7E-45 3.6E-50 401.1 21.8 388 89-655 6-427 (429)
24 COG0441 ThrS Threonyl-tRNA syn 100.0 1.6E-42 3.5E-47 388.9 26.3 386 71-660 193-584 (589)
25 KOG1637|consensus 100.0 1.1E-42 2.3E-47 367.1 21.9 366 90-657 181-556 (560)
26 TIGR00414 serS seryl-tRNA synt 100.0 9.7E-40 2.1E-44 359.5 27.0 282 5-418 41-364 (418)
27 CHL00201 syh histidine-tRNA sy 100.0 3.3E-38 7.2E-43 350.1 30.0 383 89-657 6-419 (430)
28 PRK05431 seryl-tRNA synthetase 100.0 1.1E-37 2.3E-42 344.0 26.7 283 5-418 39-362 (425)
29 PLN02678 seryl-tRNA synthetase 100.0 9E-37 2E-41 335.3 21.7 284 5-418 44-369 (448)
30 KOG1936|consensus 100.0 2.3E-34 5E-39 301.9 20.5 462 10-657 6-516 (518)
31 PLN02530 histidine-tRNA ligase 100.0 5.8E-34 1.3E-38 320.6 25.1 380 89-648 72-486 (487)
32 cd00770 SerRS_core Seryl-tRNA 100.0 1.7E-34 3.7E-39 305.6 19.0 217 68-418 19-243 (297)
33 PRK00037 hisS histidyl-tRNA sy 100.0 3.6E-33 7.8E-38 309.0 29.2 373 89-656 6-411 (412)
34 COG0172 SerS Seryl-tRNA synthe 100.0 3.6E-33 7.8E-38 301.4 22.6 282 5-418 40-365 (429)
35 cd00771 ThrRS_core Threonyl-tR 100.0 4.6E-33 1E-37 295.0 20.1 291 72-560 4-298 (298)
36 PLN02320 seryl-tRNA synthetase 100.0 1.3E-32 2.8E-37 303.6 22.6 282 5-419 104-426 (502)
37 PLN02972 Histidyl-tRNA synthet 100.0 1.8E-31 4E-36 305.7 32.8 387 88-657 328-761 (763)
38 cd00779 ProRS_core_prok Prolyl 100.0 2E-33 4.3E-38 291.5 15.0 214 70-417 6-220 (255)
39 TIGR00442 hisS histidyl-tRNA s 100.0 5.3E-30 1.1E-34 282.4 25.2 365 90-638 3-397 (397)
40 PRK12420 histidyl-tRNA synthet 100.0 1.5E-29 3.2E-34 280.9 24.8 379 89-648 6-422 (423)
41 cd00772 ProRS_core Prolyl-tRNA 100.0 8.7E-30 1.9E-34 265.3 17.9 218 70-416 6-226 (264)
42 cd00778 ProRS_core_arch_euk Pr 100.0 7.6E-30 1.7E-34 265.6 13.3 218 70-417 6-227 (261)
43 PF00587 tRNA-synt_2b: tRNA sy 99.9 4E-28 8.7E-33 237.4 8.4 170 103-399 1-171 (173)
44 KOG4163|consensus 99.9 6E-28 1.3E-32 253.1 9.9 354 87-657 84-449 (551)
45 PRK00960 seryl-tRNA synthetase 99.9 5.3E-26 1.1E-30 252.9 14.5 252 64-417 192-457 (517)
46 cd00670 Gly_His_Pro_Ser_Thr_tR 99.9 1.6E-25 3.5E-30 228.9 13.7 193 100-417 1-203 (235)
47 KOG2509|consensus 99.9 2.3E-24 4.9E-29 228.6 20.9 282 6-418 46-378 (455)
48 PRK12292 hisZ ATP phosphoribos 99.9 8.9E-22 1.9E-26 216.5 27.0 342 90-613 6-378 (391)
49 TIGR00415 serS_MJ seryl-tRNA s 99.9 3.2E-22 7E-27 219.6 16.4 234 64-399 192-434 (520)
50 PRK12421 ATP phosphoribosyltra 99.8 3.3E-19 7.2E-24 195.9 24.0 128 90-306 10-138 (392)
51 cd00858 GlyRS_anticodon GlyRS 99.8 6.9E-20 1.5E-24 169.0 14.0 120 535-656 1-120 (121)
52 cd02426 Pol_gamma_b_Cterm C-te 99.8 8.5E-20 1.8E-24 169.8 14.4 113 537-657 11-127 (128)
53 cd00862 ProRS_anticodon_zinc P 99.7 2.6E-17 5.5E-22 165.1 14.2 105 552-657 2-111 (202)
54 PRK14938 Ser-tRNA(Thr) hydrola 99.7 9.3E-17 2E-21 171.2 13.9 118 527-654 248-365 (387)
55 TIGR00443 hisZ_biosyn_reg ATP 99.7 2E-16 4.3E-21 169.4 16.2 124 94-306 1-124 (314)
56 cd00773 HisRS-like_core Class 99.7 5.5E-16 1.2E-20 161.6 16.6 118 101-306 2-119 (261)
57 PF03129 HGTP_anticodon: Antic 99.7 3.4E-16 7.4E-21 137.5 9.9 92 562-654 1-93 (94)
58 cd00861 ProRS_anticodon_short 99.6 1.9E-15 4.1E-20 132.5 10.8 92 560-652 1-93 (94)
59 PRK12293 hisZ ATP phosphoribos 99.6 1.3E-14 2.7E-19 152.8 12.5 119 89-305 7-125 (281)
60 cd00860 ThrRS_anticodon ThrRS 99.6 3.3E-14 7.2E-19 123.5 12.0 90 560-652 1-90 (91)
61 cd00738 HGTP_anticodon HGTP an 99.5 3.2E-13 6.9E-18 117.9 12.2 92 560-652 1-93 (94)
62 PF13393 tRNA-synt_His: Histid 99.3 4.2E-12 9.1E-17 135.7 11.9 125 92-306 1-125 (311)
63 cd00859 HisRS_anticodon HisRS 99.1 3.1E-10 6.7E-15 97.5 10.4 88 562-652 3-90 (91)
64 PRK12295 hisZ ATP phosphoribos 99.1 1.1E-09 2.4E-14 119.9 12.4 107 104-304 7-114 (373)
65 cd00768 class_II_aaRS-like_cor 99.0 1.5E-09 3.2E-14 108.4 11.2 113 103-305 1-113 (211)
66 TIGR02367 PylS pyrrolysyl-tRNA 99.0 5.2E-09 1.1E-13 114.3 12.7 111 103-304 241-353 (453)
67 PRK07080 hypothetical protein; 98.9 5.6E-08 1.2E-12 101.9 17.4 164 70-306 21-190 (317)
68 PRK09537 pylS pyrolysyl-tRNA s 98.8 1.5E-08 3.3E-13 110.9 11.3 108 104-302 206-315 (417)
69 COG3705 HisZ ATP phosphoribosy 98.8 1.4E-08 3.1E-13 110.1 8.1 155 90-343 6-161 (390)
70 PRK04172 pheS phenylalanyl-tRN 98.7 1.3E-07 2.8E-12 107.4 14.2 155 90-303 222-384 (489)
71 PRK12294 hisZ ATP phosphoribos 98.4 1.2E-06 2.5E-11 92.0 11.3 104 102-303 8-111 (272)
72 PTZ00326 phenylalanyl-tRNA syn 98.4 3.3E-06 7.3E-11 94.5 14.1 64 238-304 326-392 (494)
73 cd00774 GlyRS-like_core Glycyl 98.4 1.1E-07 2.4E-12 99.0 1.1 74 350-423 148-221 (254)
74 PRK00488 pheS phenylalanyl-tRN 98.3 2.9E-05 6.2E-10 83.3 17.4 54 240-302 165-218 (339)
75 PRK09350 poxB regulator PoxA; 98.1 4E-06 8.6E-11 89.7 5.0 32 101-133 5-36 (306)
76 cd00669 Asp_Lys_Asn_RS_core As 98.0 6.3E-06 1.4E-10 86.6 6.3 30 102-132 2-31 (269)
77 COG0442 ProS Prolyl-tRNA synth 98.0 3.8E-06 8.2E-11 94.4 3.7 134 524-665 255-403 (500)
78 COG0173 AspS Aspartyl-tRNA syn 98.0 2.8E-05 6.1E-10 86.6 10.0 35 268-305 211-246 (585)
79 PF12745 HGTP_anticodon2: Anti 98.0 7.2E-05 1.6E-09 78.5 12.4 99 560-659 5-109 (273)
80 COG2269 Truncated, possibly in 97.6 0.00011 2.4E-09 75.7 6.0 44 101-147 16-59 (322)
81 cd00777 AspRS_core Asp tRNA sy 97.5 0.00025 5.5E-09 75.0 8.3 32 102-134 2-33 (280)
82 KOG2411|consensus 97.5 0.00032 6.9E-09 76.9 8.7 32 99-130 176-207 (628)
83 TIGR00468 pheS phenylalanyl-tR 97.4 0.0054 1.2E-07 65.4 17.2 54 240-301 129-182 (294)
84 COG0016 PheS Phenylalanyl-tRNA 97.4 0.0097 2.1E-07 63.9 18.0 108 241-408 172-282 (335)
85 TIGR00459 aspS_bact aspartyl-t 97.4 0.00045 9.7E-09 79.7 8.4 31 100-131 137-167 (583)
86 PF00458 WHEP-TRS: WHEP-TRS do 97.3 0.00065 1.4E-08 53.9 6.3 42 13-54 1-42 (56)
87 PF01409 tRNA-synt_2d: tRNA sy 97.3 0.0019 4E-08 67.1 11.2 58 237-302 78-135 (247)
88 PRK00476 aspS aspartyl-tRNA sy 97.2 0.00071 1.5E-08 78.4 8.2 32 100-132 140-171 (588)
89 PLN02903 aminoacyl-tRNA ligase 97.2 0.00094 2E-08 77.6 9.0 34 99-133 201-235 (652)
90 PRK12820 bifunctional aspartyl 97.2 0.00088 1.9E-08 78.5 8.5 33 99-132 154-186 (706)
91 cd00776 AsxRS_core Asx tRNA sy 97.1 0.0015 3.1E-08 70.6 7.8 31 100-131 23-53 (322)
92 PRK00484 lysS lysyl-tRNA synth 97.0 0.0019 4.1E-08 73.5 9.0 31 101-132 172-202 (491)
93 PTZ00417 lysine-tRNA ligase; P 97.0 0.0011 2.4E-08 76.5 7.1 31 101-132 253-283 (585)
94 cd00775 LysRS_core Lys_tRNA sy 97.0 0.0021 4.5E-08 69.6 8.8 32 101-133 8-39 (329)
95 PLN02853 Probable phenylalanyl 97.0 0.01 2.3E-07 66.6 14.0 59 238-301 316-374 (492)
96 cd00938 HisRS_RNA HisRS_RNA bi 97.0 0.0022 4.8E-08 48.1 5.6 41 12-52 2-42 (45)
97 TIGR00470 sepS O-phosphoseryl- 96.9 0.003 6.6E-08 69.9 8.9 60 239-302 182-241 (533)
98 PRK06462 asparagine synthetase 96.8 0.0031 6.7E-08 68.5 8.2 32 100-132 29-60 (335)
99 PRK05159 aspC aspartyl-tRNA sy 96.7 0.0035 7.5E-08 70.5 7.7 32 99-131 134-165 (437)
100 PF00152 tRNA-synt_2: tRNA syn 96.7 0.0026 5.6E-08 69.1 6.4 33 100-133 21-53 (335)
101 PRK12445 lysyl-tRNA synthetase 96.7 0.0044 9.4E-08 70.8 8.2 30 101-131 184-213 (505)
102 PLN02502 lysyl-tRNA synthetase 96.7 0.0036 7.9E-08 72.0 7.4 30 102-132 230-259 (553)
103 cd00939 MetRS_RNA MetRS_RNA bi 96.6 0.0046 1E-07 46.4 5.2 40 14-53 2-41 (45)
104 TIGR00462 genX lysyl-tRNA synt 96.6 0.002 4.4E-08 68.9 4.8 31 102-133 2-32 (304)
105 PTZ00385 lysyl-tRNA synthetase 96.6 0.0049 1.1E-07 71.8 8.0 30 101-131 233-262 (659)
106 TIGR00499 lysS_bact lysyl-tRNA 96.5 0.0049 1.1E-07 70.3 7.4 31 101-132 172-202 (496)
107 PF02403 Seryl_tRNA_N: Seryl-t 96.5 0.0075 1.6E-07 54.4 7.0 51 5-55 40-90 (108)
108 PRK02983 lysS lysyl-tRNA synth 96.5 0.0047 1E-07 76.5 7.0 31 101-132 770-800 (1094)
109 cd00496 PheRS_alpha_core Pheny 96.4 0.048 1E-06 55.6 12.8 55 240-303 60-114 (218)
110 TIGR00458 aspS_arch aspartyl-t 96.4 0.0089 1.9E-07 67.1 8.1 32 99-131 131-162 (428)
111 PRK03932 asnC asparaginyl-tRNA 96.2 0.01 2.2E-07 67.0 7.6 33 99-132 131-163 (450)
112 PTZ00401 aspartyl-tRNA synthet 95.8 0.018 4E-07 66.2 7.3 32 101-133 213-244 (550)
113 KOG1035|consensus 95.8 0.91 2E-05 55.9 21.0 89 559-655 1258-1349(1351)
114 PLN02850 aspartate-tRNA ligase 95.5 0.028 6E-07 64.7 7.0 30 102-132 226-255 (530)
115 PLN02603 asparaginyl-tRNA synt 95.5 0.03 6.6E-07 64.6 7.3 31 101-132 226-256 (565)
116 TIGR00457 asnS asparaginyl-tRN 95.4 0.033 7.2E-07 63.0 7.4 33 100-133 135-167 (453)
117 cd00935 GlyRS_RNA GlyRS_RNA bi 94.9 0.077 1.7E-06 41.2 5.9 46 10-55 1-46 (51)
118 PTZ00425 asparagine-tRNA ligas 94.6 0.072 1.6E-06 61.6 7.0 34 99-133 213-246 (586)
119 PLN02532 asparagine-tRNA synth 94.4 0.079 1.7E-06 61.7 6.9 33 100-133 234-266 (633)
120 PLN02221 asparaginyl-tRNA synt 93.9 0.13 2.7E-06 59.6 7.1 33 100-133 170-202 (572)
121 COG1190 LysU Lysyl-tRNA synthe 93.4 0.087 1.9E-06 59.1 4.6 29 103-132 182-210 (502)
122 COG0017 AsnS Aspartyl/asparagi 91.6 0.31 6.6E-06 54.3 6.0 34 100-134 133-166 (435)
123 cd01200 WHEPGMRS_RNA EPRS-like 91.1 0.39 8.5E-06 35.6 4.3 39 15-53 2-40 (42)
124 cd00936 WEPRS_RNA WEPRS_RNA bi 88.5 0.68 1.5E-05 35.9 3.9 40 14-53 2-41 (50)
125 COG2024 Phenylalanyl-tRNA synt 88.2 0.44 9.6E-06 51.4 3.6 43 239-283 182-224 (536)
126 PLN02788 phenylalanine-tRNA sy 86.4 1.8 4E-05 48.0 7.3 52 241-304 130-182 (402)
127 PRK09616 pheT phenylalanyl-tRN 83.3 7.8 0.00017 45.1 11.0 60 237-302 412-471 (552)
128 cd00769 PheRS_beta_core Phenyl 82.4 3.1 6.8E-05 41.5 6.4 40 238-279 52-91 (198)
129 KOG0554|consensus 66.9 7.2 0.00016 42.8 4.4 37 96-133 127-163 (446)
130 KOG1885|consensus 56.8 9.2 0.0002 42.8 3.1 30 101-131 225-254 (560)
131 PF07106 TBPIP: Tat binding pr 56.5 56 0.0012 31.7 8.4 69 8-76 79-153 (169)
132 KOG0555|consensus 56.3 19 0.00042 39.5 5.3 36 101-137 243-278 (545)
133 PLN03194 putative disease resi 55.3 56 0.0012 32.6 8.0 62 559-622 25-91 (187)
134 PRK06253 O-phosphoseryl-tRNA s 53.3 12 0.00026 42.9 3.4 40 238-279 182-221 (529)
135 KOG2784|consensus 52.3 20 0.00042 39.1 4.5 58 239-301 308-365 (483)
136 PLN02265 probable phenylalanyl 48.1 30 0.00066 40.7 5.8 33 103-136 398-431 (597)
137 cd00733 GlyRS_alpha_core Class 46.6 1.8E+02 0.0038 30.5 10.1 41 263-306 43-85 (279)
138 TIGR00471 pheT_arch phenylalan 46.3 40 0.00087 39.3 6.4 39 237-278 414-452 (551)
139 PRK09348 glyQ glycyl-tRNA synt 46.3 1.7E+02 0.0036 30.7 9.9 41 263-306 47-89 (283)
140 CHL00200 trpA tryptophan synth 44.8 2E+02 0.0043 30.3 10.7 74 524-622 104-177 (263)
141 PF08357 SEFIR: SEFIR domain; 43.2 86 0.0019 29.4 7.2 59 562-621 2-67 (150)
142 TIGR00388 glyQ glycyl-tRNA syn 43.2 2.3E+02 0.005 29.9 10.4 41 263-306 44-86 (293)
143 PRK12295 hisZ ATP phosphoribos 40.5 14 0.00031 40.8 1.4 18 496-513 306-324 (373)
144 TIGR00559 pdxJ pyridoxine 5'-p 39.8 1E+02 0.0022 31.9 7.3 56 559-616 83-148 (237)
145 TIGR00106 uncharacterized prot 39.0 1.6E+02 0.0034 26.1 7.6 36 562-597 4-40 (97)
146 cd00003 PNPsynthase Pyridoxine 38.1 1.1E+02 0.0025 31.5 7.4 56 559-616 83-148 (234)
147 PF13393 tRNA-synt_His: Histid 37.3 25 0.00054 37.4 2.7 37 494-531 251-311 (311)
148 PRK14908 glycyl-tRNA synthetas 36.9 1.8E+02 0.0039 36.4 10.0 41 263-306 48-90 (1000)
149 PF03740 PdxJ: Pyridoxal phosp 34.2 1.1E+02 0.0025 31.6 6.7 56 559-616 84-149 (239)
150 KOG0556|consensus 29.8 53 0.0011 36.5 3.6 30 102-132 229-258 (533)
151 PLN02221 asparaginyl-tRNA synt 29.1 38 0.00083 39.6 2.6 42 8-49 235-276 (572)
152 CHL00192 syfB phenylalanyl-tRN 28.6 1.2E+02 0.0026 36.6 6.7 43 234-278 440-482 (704)
153 PF09524 Phg_2220_C: Conserved 28.0 29 0.00064 29.3 1.0 18 239-258 55-72 (74)
154 PF06810 Phage_GP20: Phage min 26.9 2.4E+02 0.0052 27.2 7.3 44 7-50 26-69 (155)
155 PRK05265 pyridoxine 5'-phospha 26.9 1.9E+02 0.0041 30.0 6.8 56 559-616 86-151 (239)
156 PF14282 FlxA: FlxA-like prote 26.5 2.8E+02 0.006 25.0 7.1 50 5-54 16-66 (106)
157 COG2179 Predicted hydrolase of 25.9 1.5E+02 0.0032 29.3 5.5 30 565-595 39-68 (175)
158 COG0072 PheT Phenylalanyl-tRNA 25.8 1.7E+02 0.0037 34.9 7.3 38 101-139 350-387 (650)
159 PF00152 tRNA-synt_2: tRNA syn 24.2 60 0.0013 35.1 2.9 31 268-300 95-125 (335)
160 COG4635 HemG Flavodoxin [Energ 23.6 1.1E+02 0.0024 29.9 4.1 35 563-597 3-37 (175)
161 PF05531 NPV_P10: Nucleopolyhe 23.2 4.7E+02 0.01 22.2 7.8 49 6-54 9-57 (75)
162 PF01520 Amidase_3: N-acetylmu 23.0 2.5E+02 0.0055 26.8 6.8 51 574-624 26-79 (175)
163 PLN02591 tryptophan synthase 22.8 8.6E+02 0.019 25.4 11.0 74 524-622 91-164 (250)
164 KOG1885|consensus 22.3 13 0.00028 41.7 -2.7 27 268-298 295-322 (560)
165 TIGR00262 trpA tryptophan synt 22.0 7.1E+02 0.015 25.9 10.3 72 524-620 100-171 (256)
166 smart00255 TIR Toll - interleu 20.6 3.1E+02 0.0067 24.8 6.6 67 561-628 2-70 (140)
167 TIGR00472 pheT_bact phenylalan 20.5 2E+02 0.0044 35.2 6.7 38 238-277 544-581 (798)
168 PRK00629 pheT phenylalanyl-tRN 20.2 1.8E+02 0.004 35.5 6.2 39 238-278 538-576 (791)
No 1
>PLN02734 glycyl-tRNA synthetase
Probab=100.00 E-value=8.5e-155 Score=1301.44 Aligned_cols=669 Identities=52% Similarity=0.856 Sum_probs=641.5
Q ss_pred ChhHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhcC----------CCCCCCChHHHHH
Q psy17941 3 DPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLA----------PFVSSFDRAKMED 72 (679)
Q Consensus 3 ~~~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~~----------~~~~~~~~~~~~~ 72 (679)
+..+..+++.|++.++.|+..||.||++++++.++.++++.|+.++..++..+..+. +....+ ++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 80 (684)
T PLN02734 2 EDSLRDALAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSALEKELQAAVGAGGDGAASKEAF-RQAVVN 80 (684)
T ss_pred cchHHHHHHHHHHHHHHhHHHHhhhhhccCchHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccccchhHH-HHHHHH
Confidence 456778899999999999999999999999999999999999999988887754432 222224 899999
Q ss_pred HHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeC
Q psy17941 73 LLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDL 152 (679)
Q Consensus 73 l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~ 152 (679)
+|+||||++||||||||++|+|||||+||+|++||+++||+|||.+++|.||+||+|+|..||++|||+++|+|.|++|.
T Consensus 81 l~krRgF~~pSfeIYGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~mv~~~ 160 (684)
T PLN02734 81 TLERRLFYIPSFKIYGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLMVKDE 160 (684)
T ss_pred HHHhcCCccccccccCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCcccccceeeEcC
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred CCCcccchhhhHHHHHHHhhcCC-CCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcc
Q psy17941 153 KTGECFRLDHLIKAHLEKLAAEP-KTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQ 231 (679)
Q Consensus 153 ~~~~~~r~d~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ 231 (679)
+||+|||||||+|+++++++.++ +++++..++++.+++.+++++.+||...|.+++|+||.|||+||+|++|||||+|.
T Consensus 161 ~~~~~~RADhlie~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~ 240 (684)
T PLN02734 161 KTGTCFRADHLLKDFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTS 240 (684)
T ss_pred CCCcEecchHHHHHHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeec
Confidence 99999999999999999988774 78888899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhH
Q psy17941 232 IGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKF 311 (679)
Q Consensus 232 ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~ 311 (679)
|||+|+..+|||||||||||+||+|++++|+++|||+.||||++|||||+||+||+|+|||+|+|||+||+|+++.|+.|
T Consensus 241 IGp~~~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~Fv~P~~k~h~~f 320 (684)
T PLN02734 241 IGPSGLSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPEDKSHPKF 320 (684)
T ss_pred ccCcCCccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhheecCcccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCc
Q psy17941 312 SDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDC 391 (679)
Q Consensus 312 ~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~ 391 (679)
+.|.|+++ ++|++..|++|.....|++++|+++++|+|+|++||++++++||.++|++++++|||||+++||||||++|
T Consensus 321 ~~v~~~~l-~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dc 399 (684)
T PLN02734 321 SEVADLEF-LLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADC 399 (684)
T ss_pred hhhhhhhh-hcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhcc
Confidence 99999999 99999999999887899999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhcCH
Q psy17941 392 WDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDL 471 (679)
Q Consensus 392 ~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~ 471 (679)
||+|+++||||+||+|||||+||||+.|+++||.+|.+.++|++|.+++.+.+.++++.+|+.|++|++.|.++|..+++
T Consensus 400 wD~E~~~~~GWiE~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~ 479 (684)
T PLN02734 400 WDAEIECSYGWIECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNE 479 (684)
T ss_pred EeEEEecCCCcEEEEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcCCcEEEeec--CceeeeccceeEEeeeecccceeEeccceeeccccHHHHHHHHHHhccccCCCcccc
Q psy17941 472 NSVSAVEESLNTNGKYELLVD--DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQR 549 (679)
Q Consensus 472 ~~~~~~~~~l~~~g~~~~~~~--g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIeRll~al~e~~~~~~~~~~~r 549 (679)
++...+...|+..|.+.+.++ |+.|+++++|+.+++++++++++.|+|+||++|||||||+++++|++++.+.+|++|
T Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIEPS~GIgRIl~AilE~s~~~~~~De~R 559 (684)
T PLN02734 480 KEAMEMKAKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYTRPGDEQL 559 (684)
T ss_pred hHHHHHHHhhhhcCceeeeecccCcceeechhheeeeeeeeeecCceecCceEecCccHHHHHHHHHHHHhccccCCCcc
Confidence 999999999999999999887 999999999999999999999999999999999999999999999999888778899
Q ss_pred ccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCe
Q psy17941 550 TYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHS 629 (679)
Q Consensus 550 ~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~ 629 (679)
.+++||+++||++|.|+|+..+++..++|.+|++.||++|++|.+|+++.++|+||++|+++|+||+||||. +|+
T Consensus 560 ~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~~~SIGKRyrrADeiGIPf~ItIG~-----dgt 634 (684)
T PLN02734 560 NVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDITGTSIGKRYARTDELGVPFAVTVDS-----DGS 634 (684)
T ss_pred eEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHHHHcCCCEEEEECC-----CCe
Confidence 999999999999999999987666889999999999999999999999999999999999999999999995 589
Q ss_pred EEEEECCCCceEEEehHHHHHHHHHHHhcccchHHHHccCCCcccccCC
Q psy17941 630 VTLRERDSMTQVRVKVNEVASVIKDLSLAKITWEDVQSKYPKFEAQEGS 678 (679)
Q Consensus 630 Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 678 (679)
|+||+|++++|.+++++++++.|.+++.+..+|+++.++||.|++|+++
T Consensus 635 VTIRdRdsgeQ~rV~ldeLv~~I~~li~~~~~w~~~~~~~~~~~~~~~~ 683 (684)
T PLN02734 635 VTIRERDSKDQVRVPVEEVASVVKDLTDGRMTWEDVTAKYPAHSSAADD 683 (684)
T ss_pred EEEEECCCCceEEeeHHHHHHHHHHHHcCCCCHHHHHhhCccccccccC
Confidence 9999999999999999999999999999999999999999999998754
No 2
>KOG2298|consensus
Probab=100.00 E-value=6.8e-149 Score=1169.26 Aligned_cols=596 Identities=61% Similarity=0.973 Sum_probs=581.4
Q ss_pred CCCCCCCChHHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc
Q psy17941 59 APFVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS 138 (679)
Q Consensus 59 ~~~~~~~~~~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S 138 (679)
.|.+.++++++++++|+||+|+.|||.||||++|+|||||+||++++||+++||+|||.+++|.||+||+|+|++|+++|
T Consensus 4 ~~~~~~~~R~k~e~~LkrrfFy~~sf~IYgGVsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaS 83 (599)
T KOG2298|consen 4 VPKAASFDRAKLEDLLKRRFFYDPSFAIYGGVSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKAS 83 (599)
T ss_pred ccccchhhHHHHHHHHhhceeeccchhhhcCcccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCC
Q psy17941 139 GHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDL 218 (679)
Q Consensus 139 Gh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~ 218 (679)
||+++|+|.|++|.++|+|||||||+++. +++|. ++.+++.+++++.+++.+++++++|+...+.+|+|++|.|||+|
T Consensus 84 GHVdkF~D~mvkD~ktGecfRADHLvk~~-~~rl~-~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~L 161 (599)
T KOG2298|consen 84 GHVDKFADWMVKDEKTGECFRADHLVKDA-EERLK-KKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDL 161 (599)
T ss_pred cchhhhhHHHhcCccccceehhhHHHHHH-HHhhh-cccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCc
Confidence 99999999999999999999999999999 55554 77889999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEE
Q psy17941 219 SEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIE 298 (679)
Q Consensus 219 ~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~ 298 (679)
|+|.+|||||.|+|||+|+..+|||||||||+|+||+|+|++|+++|||+.||||+.|||||+||+||+|+|||+|+|||
T Consensus 162 s~p~~FNLMF~T~IGpsG~~kgyLRPETAQG~FlNFkrlle~N~~KlPFA~AqiG~~fRNEISpRsGLlRvrEF~maEIE 241 (599)
T KOG2298|consen 162 SEPRQFNLMFETQIGPSGGLKGYLRPETAQGQFLNFKRLLEFNQGKLPFASAQIGKSFRNEISPRSGLLRVREFTMAEIE 241 (599)
T ss_pred CCCcccceeccccccCCCCcccccCccccccccccHHHHHHhcCCCCcchHHHhchHhhhccCcccCceeEEEeehHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhh
Q psy17941 299 HFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQ 378 (679)
Q Consensus 299 ~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~ 378 (679)
||++|..+.|++|+.|.+..+ .+|+++.|+.|.....+++++|+++++++|+++|||+++++.||.++|++.+++||||
T Consensus 242 HFvdP~~K~h~kF~~V~~~~l-~l~~~~~q~~g~~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRq 320 (599)
T KOG2298|consen 242 HFVDPLLKSHPKFSLVAAEKL-RLFPRDKQLSGQSAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQ 320 (599)
T ss_pred ccCCCCCCCChhhhhhhhhhh-hhcchhhhhccchhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhCcchhhcchHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccch
Q psy17941 379 HMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKD 458 (679)
Q Consensus 379 ~~~~e~~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~ 458 (679)
|+.|||||||+||||.|+.++|||+||||||||++|||+.|.++||++|.+..++++|++++.+.+.++++.+|++|+++
T Consensus 321 H~~nEMAHYA~DCWDaEi~tSYGWIEcVG~ADRs~yDL~~Hs~~t~~~Lv~~~kl~ePkeve~~~i~~~kk~~g~~fk~~ 400 (599)
T KOG2298|consen 321 HMANEMAHYAFDCWDAEIKTSYGWIECVGCADRAAYDLSTHSRASKVWLVAELRLREPKEVEFAVIPPNKKELGCAFKKD 400 (599)
T ss_pred HhhhhhhhhhccccchhhhhccCcEEEeeccchhheeeecCccccCCceeehhhcCCcceEEEEEeccchhhcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccHHHHHHHHHHh
Q psy17941 459 AKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEH 538 (679)
Q Consensus 459 ~~~i~d~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIeRll~al~e~ 538 (679)
++.+.++|...+++++.+....|...|.+.+.+ +++++.++.+++++++.+...|+|.||++|||||||+++|.||
T Consensus 401 ak~v~~~l~~~s~~e~~~~~~~L~~~g~~~~~v----~~l~k~~v~i~~~~k~~hV~e~~P~VIEPSfGiGRI~Y~l~EH 476 (599)
T KOG2298|consen 401 AKGVNETLIFPSGKELIETLENLGDHGLLHMYV----VNLSKLHVRIKRKTKVPHVREVNPDVIEPSFGIGRISYQLTEH 476 (599)
T ss_pred ccchhHHhhcCCHHHHHHHHHHhhcCCcEEEEE----EecccceeeeeeeeeeeeEEeecCCcccccchhhHHHHHHHhh
Confidence 999999999999999999999999999888876 8899999999999999999999999999999999999999999
Q ss_pred ccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEE
Q psy17941 539 NFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGIT 618 (679)
Q Consensus 539 ~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~Ii 618 (679)
+++ +.+|+||+++++||.+||++|+|.|++.+.++.+.+..|.+.|+++||++.+|+++.|||++|++.|++|+||.|+
T Consensus 477 sF~-R~~de~R~~~sfpp~vAPiK~~v~pls~n~ef~pv~~~ls~~L~~~gis~kvdds~~SIGrrYAr~DElgipFgiT 555 (599)
T KOG2298|consen 477 SFT-RKGDEQRKVLSFPPLVAPIKVALDPLSPNLEFRPVCQGLSNELTENGISVKVDDSSSSIGRRYARTDELGIPFGVT 555 (599)
T ss_pred hhc-cCcccccceeccCccccceEEEEEeccCchhHHHHHHHHHHHHHhCCCeEEecCCCCcHhhhhhccccccCceEEE
Confidence 998 7789999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHhcccchH
Q psy17941 619 IDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKITWE 663 (679)
Q Consensus 619 VG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~~~~~ 663 (679)
|+.+++ ++++||||+|+|+.|++++++++.+.|.+++.+..+|+
T Consensus 556 vDfdtl-k~~tVTlReRdS~~QvR~~i~e~~s~v~~~~~g~~~w~ 599 (599)
T KOG2298|consen 556 VDFDTL-KNGTVTLRERDSTMQVRMHISKLKSFLIKYISGAKNWE 599 (599)
T ss_pred Echhhh-cCceEEEeecccHHHHHhhHHHHHHHHHHHhcccccCC
Confidence 999999 79999999999999999999999999999999999995
No 3
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=100.00 E-value=3.5e-131 Score=1097.27 Aligned_cols=547 Identities=53% Similarity=0.864 Sum_probs=515.6
Q ss_pred ChHHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCccccc
Q psy17941 66 DRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFA 145 (679)
Q Consensus 66 ~~~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~ 145 (679)
+.+++.++|+||||++||||||||++|+|||||+|++|++||++.||++||.++|+.||+||+|+|..||++||||++|+
T Consensus 2 ~~~~~~~l~~rrgf~~~s~eIYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~ 81 (551)
T TIGR00389 2 NMEVIMSLLKRRGFVFQSFEIYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFT 81 (551)
T ss_pred cHHHHHHHHHhcCCccccchhccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccC
Confidence 46788999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred CCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCC-CCCchhh
Q psy17941 146 DLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKND-LSEPMEF 224 (679)
Q Consensus 146 d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~-~~~~~~f 224 (679)
|.|++|.+||+|||||||+|+.+++.+ .+.+.+||...|.++.|+||.|||+ ||+|++|
T Consensus 82 D~mv~~~~~~~~~RaD~l~e~~~~~~~--------------------~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~F 141 (551)
T TIGR00389 82 DWMVDCKSCKERFRADHLIEEKLGKRL--------------------WGFSGPELNEVMEKYDINCPNCGGENLTEVRSF 141 (551)
T ss_pred CceeecCCCCCEecchHHHHHHhhhhc--------------------ccCCHHHHHHHHHHcCCCCCCCCCCCCCCcccc
Confidence 999999999999999999999876532 3678899999999999999999996 9999999
Q ss_pred hhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCC
Q psy17941 225 NLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPT 304 (679)
Q Consensus 225 nlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~ 304 (679)
||||+|.|||+|+..+|||||||||||+||+|++++|+++|||++||||++|||||+||+||+|+|||+|+|||+||+|+
T Consensus 142 NLMF~t~iGp~~~~~~yLRPETAQGiFvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr~~l~R~REF~q~EiE~F~~p~ 221 (551)
T TIGR00389 142 NLMFQTEIGVVGKRKGYLRPETAQGIFINFKRLLQFFRRKLPFGVAQIGKSFRNEISPRNGLFRVREFEQAEIEFFVHPL 221 (551)
T ss_pred ccceeeccCCCCCcccccccccchhhHHhHHHHHHhcCCCCCeeehhhhHhhhcccCcccceEEeehhhhchhheecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccc
Q psy17941 305 DKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEM 384 (679)
Q Consensus 305 ~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~ 384 (679)
++.|+.|+.+.|..+ ++|.+..|..| +++|+++++|+|+|++||++++..||.++|++++++|||||+++||
T Consensus 222 ~~~~~~f~~~~~~~~-~l~~~~~~~~~-------~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~ 293 (551)
T TIGR00389 222 DKSHPKFEEVKQDIL-PLLPRQMQESG-------IGEAVESGMIENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEM 293 (551)
T ss_pred cccchhhHHHHHHHH-hhccchhhhcc-------HHHHHHhcccchHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHH
Confidence 999999999999998 99998665554 9999999999999999999999999999999999999999999999
Q ss_pred cccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHH
Q psy17941 385 AHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICD 464 (679)
Q Consensus 385 ~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d 464 (679)
||||.+|||+|+++|+||+||+|||+|+||||+.|+++||.+|.+.+++++|..++.+.+.++++.+||.|++|++.+.+
T Consensus 294 AHYa~~~~D~e~~~~~Gw~E~~G~a~R~~yDL~~H~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 373 (551)
T TIGR00389 294 AHYAKDCWDFEFLTPYGWIECVGIADRGDYDLTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIES 373 (551)
T ss_pred hhhccccEeEEEecCCCcEEEEEeccccccChHHHHHhhCCCeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccHHHHHHHHHHhccccCC
Q psy17941 465 ALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRD 544 (679)
Q Consensus 465 ~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIeRll~al~e~~~~~~~ 544 (679)
.| +++++..++..++. ..|+++++||.++++++++++++++|+||++|+||+|++++|++++++++.
T Consensus 374 ~~---~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~P~VIepS~GIdRIi~ALle~~~~e~~ 440 (551)
T TIGR00389 374 NL---SEDDLEEREEELDK----------NEVELDKDLVEIEMVTEVVHGEKYIPHVIEPSFGIDRIIYALLEHSYQEEV 440 (551)
T ss_pred hh---cHHHHHHHHhhhhc----------cceecchhhhhheeeeeccCCcEecceEEEcccCHHHHHHHHHHhhCcccc
Confidence 54 66667777777653 279999999999999999999999999999999999999999999876441
Q ss_pred -CccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCC
Q psy17941 545 -GDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDT 623 (679)
Q Consensus 545 -~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~E 623 (679)
.+++|+++.||+++||++|+|+|++++++....|.+|++.||++|++|++|+++ ++|+||++|+++|+||+||||+++
T Consensus 441 ~~~~~r~vL~lp~~lAP~kV~VIpl~~~~el~~~A~eIa~~LR~~GI~VeiD~s~-sIGKq~rrADeiGiPf~IIIG~~E 519 (551)
T TIGR00389 441 LDGEEREVLRLPPHLAPIKVAVLPLVNKEELKEIAKEIFQALRKTGIRIKYDDSG-TIGKRYRRADEIGTPFCVTIDFET 519 (551)
T ss_pred ccccccceeccCCccCCceEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCC-CHHHHHHHHHHcCCCEEEEECCch
Confidence 246899999999999999999999764457889999999999999999999876 499999999999999999999999
Q ss_pred CCCCCeEEEEECCCCceEEEehHHHHHHHHHH
Q psy17941 624 LKEPHSVTLRERDSMTQVRVKVNEVASVIKDL 655 (679)
Q Consensus 624 l~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l 655 (679)
+ ++|+|+||+|+|++|.+++++++.+.|.++
T Consensus 520 l-edgtVTIRdRdT~eQ~~I~ldeL~~~L~e~ 550 (551)
T TIGR00389 520 L-EDETVTIRERDSMKQVRVKIKELPSYIKKL 550 (551)
T ss_pred h-hCCEEEEEECCCCceEEeeHHHHHHHHHhh
Confidence 9 799999999999999999999998888754
No 4
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-130 Score=1050.13 Aligned_cols=552 Identities=48% Similarity=0.810 Sum_probs=517.3
Q ss_pred CChHHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhh-hCceEeecCcccchhhhhhcCCccc
Q psy17941 65 FDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLE-EQMLEVDCSILTLEPVLKASGHVDR 143 (679)
Q Consensus 65 ~~~~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~-~g~~ev~~P~l~~~~v~~~SGh~~~ 143 (679)
+..+.+.+++|||||++||+|||||++|+|||||+|+.|++||++.||++||.+ .++.||+||+|+|.+||++|||+++
T Consensus 4 ~~~e~i~~l~KrRGF~~~s~EIYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~ 83 (558)
T COG0423 4 FDMEKIVELAKRRGFVFPSSEIYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDK 83 (558)
T ss_pred hhHHHHHHHHHhcccccccceeecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCcccc
Confidence 346778899999999999999999999999999999999999999999999886 8999999999999999999999999
Q ss_pred ccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchh
Q psy17941 144 FADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPME 223 (679)
Q Consensus 144 f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~ 223 (679)
|+|.|+.|.+||++||||||+|+.+.+.. ..+.+.+|+-.+|.+++|+||.||+.|.+|..
T Consensus 84 FsDplv~c~~c~~~yRADHLiEe~l~~~~-------------------~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~ 144 (558)
T COG0423 84 FSDPLVECKKCGERYRADHLIEEYLGKDG-------------------HGNMSPEELTEIIREYDIRCPECGGELNEVRE 144 (558)
T ss_pred cccceeeccccchhhhhhHHHHHHhhhcc-------------------cccCCHHHHHHHHHHcCCcCCCcCCccCCcce
Confidence 99999999999999999999999876532 12267788888999999999999999999999
Q ss_pred hhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCC
Q psy17941 224 FNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDP 303 (679)
Q Consensus 224 fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~ 303 (679)
|||||+|.|||.++..+|||||||||||+||+|++++++++|||+++|||++|||||+||+||+|+|||+|+|+|+||+|
T Consensus 145 FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~klPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv~P 224 (558)
T COG0423 145 FNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARNKLPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFVDP 224 (558)
T ss_pred eeeEEEeeecCCCCcceeecccccchhhhhhHHHHHHhccCCCeEEEeechhhccccCcccceeehhhhhhhheeeEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCcc
Q psy17941 304 TDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNE 383 (679)
Q Consensus 304 ~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e 383 (679)
.++.|+.|+.|.+..+ +++++..|+.|.. .+|++.+++.|++++||++++..|+..+|++++++|||+|+++|
T Consensus 225 ~~k~~p~f~~v~~~~l-~l~~~~~q~~~~~------~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E 297 (558)
T COG0423 225 EEKEHPKFNEVKDEKL-PLLPREAQEEGTE------EEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEE 297 (558)
T ss_pred CcccCcchhhhhhhhc-ccccHHHhhhhhh------hhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHH
Confidence 9999999999999999 9999988887733 99999999999999999999999999999999999999999999
Q ss_pred ccccccCccchhhhcc-CCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHH
Q psy17941 384 MAHYACDCWDAECLTS-YGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTI 462 (679)
Q Consensus 384 ~~~ya~~~~d~e~~~~-~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i 462 (679)
|||||.+|||+|+.++ +||+||+|||||+||||+.|+++||.+|.+..+|++|++++.+.+..+.+++||.|+++++.|
T Consensus 298 ~AHYa~~twD~E~~~~~~gWiE~~GiAdRtdYDL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v 377 (558)
T COG0423 298 LAHYSKDTWDAEYKFPFGGWIELVGIADRTDYDLSRHSKFSGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKV 377 (558)
T ss_pred HhhhhhcceeEEEecCCCceEEEEEeecccccchhhhhhhccccceeeeccCCcceeeeeecccchhhcChhhhhhHHHH
Confidence 9999999999999999 779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccHHHHHHHHHHhcccc
Q psy17941 463 CDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKM 542 (679)
Q Consensus 463 ~d~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIeRll~al~e~~~~~ 542 (679)
.+.|+ ++......+ +| |+++.+++.++... ++++++|+|+||++||||+|+++++++++++.
T Consensus 378 ~~~~s-----e~~~~~~~~----------~~--~~~~~~~~~i~~~~-~~~~e~~iP~VIEPSfGidRi~y~~l~~ay~~ 439 (558)
T COG0423 378 AEALS-----ELEELEKEL----------NG--YEVSKDLVIIEEVE-KVTGEKYIPHVIEPSFGIDRIFYALLEHAYTE 439 (558)
T ss_pred hhhhh-----hhhhhhhcc----------Cc--cccccchhheeeee-eccCceecCceeccCCCchHHHHHHHHHhhcc
Confidence 99654 122222221 23 88899999988777 89999999999999999999999999999998
Q ss_pred CCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCC
Q psy17941 543 RDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFD 622 (679)
Q Consensus 543 ~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~ 622 (679)
++.++.|.|+++|+.+||++|+|+|+..++++.+.|..|.+.|++.|+.|.+|+++ |||+||+++|++|+||+|+|+.+
T Consensus 440 ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~v~yDdsG-sIGrRYrR~DEIGtPfcVTvD~e 518 (558)
T COG0423 440 EEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNVDYDDSG-SIGRRYRRQDEIGTPFCVTVDFE 518 (558)
T ss_pred cccccceeEEecCcccCceEEEEEeeecccchhHHHHHHHHHHHhcCceEEecCCC-cHhhhhhhccccCCceEEEecCC
Confidence 88778899999999999999999999987789999999999999999999999987 99999999999999999999999
Q ss_pred CCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHhcccch
Q psy17941 623 TLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKITW 662 (679)
Q Consensus 623 El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~~~~ 662 (679)
++ ++++||||+|+|++|++|++++++++|..++.+...|
T Consensus 519 Tl-eD~tVTiReRDs~~QvRv~i~el~~~l~~~~~~~~~~ 557 (558)
T COG0423 519 TL-EDNTVTIRERDSMEQVRVKIEELADYLRELIKGGFEW 557 (558)
T ss_pred cc-cCCcEEEeecCchheeeeeHHHHHHHHHHHhcccccc
Confidence 99 8999999999999999999999999999988765444
No 5
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.5e-108 Score=885.34 Aligned_cols=437 Identities=37% Similarity=0.560 Sum_probs=392.7
Q ss_pred hHHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhh-hhCceEeecCcccchhhhhhcCCccccc
Q psy17941 67 RAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVL-EEQMLEVDCSILTLEPVLKASGHVDRFA 145 (679)
Q Consensus 67 ~~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~-~~g~~ev~~P~l~~~~v~~~SGh~~~f~ 145 (679)
-+++.++++||||++||+|||||.+|+|||||+|+.|++||++.||++||. +.++.+|++|+|+|..||++|||+++|+
T Consensus 6 ~~~i~~l~krrgf~~~s~eiYgg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~ 85 (539)
T PRK14894 6 LDQIVALAKRRGFIFPSSEIYGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFN 85 (539)
T ss_pred HHHHHHHHHhCCCCccCccccCCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCC
Confidence 467888999999999999999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred CCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCC-CCCCCchhh
Q psy17941 146 DLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTK-NDLSEPMEF 224 (679)
Q Consensus 146 d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~-~~~~~~~~f 224 (679)
|.|++|++|+.+||||||+ ++||.|| ++||+|++|
T Consensus 86 DpmV~CkkCk~ryRaD~Li--------------------------------------------ikCP~CGs~dLTe~~~F 121 (539)
T PRK14894 86 DPLVDCRDCKMRWRADHIQ--------------------------------------------GVCPNCGSRDLTEPRPF 121 (539)
T ss_pred CceeECCCCCccccCccce--------------------------------------------eeCCCCCCcCCCcceec
Confidence 9999999999999999972 4799999 599999999
Q ss_pred hhhhhcccCCCCC--cccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 225 NLMFATQIGPSGL--IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 225 nlmf~~~ig~~g~--~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
||||+|+|||.++ ..+|||||||||||+||++++++++++|||++||||++|||||+||+||+|+|||+|+||++||+
T Consensus 122 NLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv~ 201 (539)
T PRK14894 122 NMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNFLFRVREFEQMEIEYFVM 201 (539)
T ss_pred cccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCceeecccchhheEEEEeC
Confidence 9999999999887 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCc
Q psy17941 303 PTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGN 382 (679)
Q Consensus 303 ~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~ 382 (679)
|++.. +|++||++.+..||.++|++++++|||+|+++
T Consensus 202 P~~~~-------------------------------------------~~~~y~~~~~~~fl~~iGi~~~~lrfr~h~~~ 238 (539)
T PRK14894 202 PGTDE-------------------------------------------EWHQRWLEARLAWWEQIGIPRSRITIYDVPPD 238 (539)
T ss_pred CCchH-------------------------------------------HHHHHHHHHHHHHHHHhCCCHHHeeeeecCcH
Confidence 98642 46899999999999999999999999999999
Q ss_pred cccccccCccchhhhcc-CCceeeeeccccchhhHhHHHHHhCC-cccccccCCCCccceeecccCcccccCccccchhh
Q psy17941 383 EMAHYACDCWDAECLTS-YGWVECVGCADRSAYDLTQHFKATGV-RLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAK 460 (679)
Q Consensus 383 e~~~ya~~~~d~e~~~~-~g~~e~~~~~~r~~~dl~~~~~~s~~-~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~ 460 (679)
||||||.+|||+|+.+| +||+||+|||+|+||||+.|+++++. +|.+... +++.
T Consensus 239 ElAHYa~~~~D~e~~~p~~Gw~E~~Gia~RtdyDL~~H~~~s~~~~l~~~~~-------------~~~~----------- 294 (539)
T PRK14894 239 ELAHYSKRTFDLMYDYPNIGVQEIEGIANRTDYDLGSHSKDQEQLNLTARVN-------------PNED----------- 294 (539)
T ss_pred HhhhhhhccEEEEEECCCCCeEEEEEeecccccCHHHHhhhcccCCceeeec-------------cccC-----------
Confidence 99999999999999997 79999999999999999999998885 6654110 1100
Q ss_pred HHHHHhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccHHHHHHHHHHhcc
Q psy17941 461 TICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNF 540 (679)
Q Consensus 461 ~i~d~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIeRll~al~e~~~ 540 (679)
+ + .+|+ |-+...++.|+|+||++|+|+||++++++++++
T Consensus 295 ---------s----------------------~------~~l~----~~~~~~~~~~iP~ViEpS~G~dR~~~a~l~~~y 333 (539)
T PRK14894 295 ---------S----------------------T------ARLT----YFDQASGRHVVPYVIEPSAGVGRCMLAVMCEGY 333 (539)
T ss_pred ---------C----------------------C------ceEE----EEeccCCcccCCceeecCcchhHHHHHHHHHHH
Confidence 0 0 0111 123355678999999999999999999999988
Q ss_pred ccCC----------------------------------------------------------------------------
Q psy17941 541 KMRD---------------------------------------------------------------------------- 544 (679)
Q Consensus 541 ~~~~---------------------------------------------------------------------------- 544 (679)
+++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (539)
T PRK14894 334 AEELTKAIPGEKLAAVGDALEAFLKSVGRSEKLAGEARDAILARGEALLQALPERLPEVEQLLAMPGADQIELGKKLRGQ 413 (539)
T ss_pred hhhhhcccccccccccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7541
Q ss_pred -----CccccccccCCCCCCCceEEEEecCC-CCChHHHHHHHHHHHHHCCC-eEEEeCCCCCHHHHHHHHHHhCCCEEE
Q psy17941 545 -----GDEQRTYLALPPLVAPLKASILPLSS-NPEFQPFIKMLSSELSQNGI-SFKVDDSGGSIGKRYARTDEIAIPFGI 617 (679)
Q Consensus 545 -----~~~~r~~l~~P~~laP~~V~Vi~l~~-~~e~~~~a~~l~~~Lr~~Gi-~v~~D~~~~slgkq~k~Ad~~Gip~~I 617 (679)
+++.|.++.||+|+||+||+|+|+.+ ..++.++|.+|++.|+++|+ +|++|+ +.+||+||++||++|+||+|
T Consensus 414 ~~~~~~E~~rgvLplp~wLAPvQVaVLPLs~~~~~l~eyAkeI~~~L~~~Gi~rv~~Dd-sesIGKKyRraDeiGiPy~I 492 (539)
T PRK14894 414 AQPLIDEHYRTVLRLKPRLAPIKVAVFPLKRNHEGLVATAKAVRRQLQVGGRMRTVYDD-TGAIGKLYRRQDEIGTPFCI 492 (539)
T ss_pred cccCCCcccceecCCCcCCCCceEEEEeccccccchHHHHHHHHHHHHHCCCceEEEcC-CCCHhHHHHhhhccCCCEEE
Confidence 02478999999999999999999986 34577999999999999998 999999 56999999999999999999
Q ss_pred EE-------eCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 618 TI-------DFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 618 iV-------G~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
|| |++|. ++++||||+|+|++|.+|+++++++.|.+.++
T Consensus 493 TVD~~Tl~dGdkE~-e~gTVTVR~RDs~eQ~rV~ideli~~L~~~~~ 538 (539)
T PRK14894 493 TVDFDTIGQGKDPA-LAGTVTVRDRDTMAQERVPISELEAYLRDRVS 538 (539)
T ss_pred EEeccccccccchh-hcCeEEEEEeCCCeEEEEEHHHHHHHHHHHhc
Confidence 99 66666 56999999999999999999999999987654
No 6
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-89 Score=759.26 Aligned_cols=443 Identities=43% Similarity=0.750 Sum_probs=393.7
Q ss_pred hHHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhh-hCceEeecCcccchhhhhhcCCccccc
Q psy17941 67 RAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLE-EQMLEVDCSILTLEPVLKASGHVDRFA 145 (679)
Q Consensus 67 ~~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~-~g~~ev~~P~l~~~~v~~~SGh~~~f~ 145 (679)
.+.+.++++||||++||+|||||++|+|||+|.|++|+++|+++||++|+.. .||+||+||++++.+||++||||++|+
T Consensus 4 ~~~~~~~~~~~~~~~~s~~iy~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~ 83 (456)
T PRK04173 4 MEKIVSLAKRRGFVFPSSEIYGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFS 83 (456)
T ss_pred HHHHHHHHHhcCCeeeccccccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccC
Confidence 5678889999999999999999999999999999999999999999999543 899999999999999999999999999
Q ss_pred CCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCC-CCCchhh
Q psy17941 146 DLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKND-LSEPMEF 224 (679)
Q Consensus 146 d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~-~~~~~~f 224 (679)
|.||.|.+++++|||||++++.+++.+. .+.+++...+..++|+||+|+++ |++|++|
T Consensus 84 d~m~~~~~~~~~~r~d~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f 142 (456)
T PRK04173 84 DPLVECKKCKKRYRADHLIEELGIDAEG---------------------LSNEELKELIRENDIKCPECGGENWTEVRQF 142 (456)
T ss_pred CceeEeCCCCCEeechhhhHHHhhhhcc---------------------ccHHHHHHHHHHhCCCCCCCCCCCCcCccch
Confidence 9999999999999999999887765431 14457777788899999999987 9999999
Q ss_pred hhhhhcccCC--CCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 225 NLMFATQIGP--SGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 225 nlmf~~~ig~--~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
||||+|.||| .++..+|||||||||||.||++.+..++++||++++|+|+|||||++|+.||+|+|||+|+|+|+||+
T Consensus 143 ~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~ 222 (456)
T PRK04173 143 NLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVK 222 (456)
T ss_pred hhceeecccCccCCCcceeeccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEEC
Confidence 9999999999 78899999999999999999999998866999999999999999999999999999999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCc
Q psy17941 303 PTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGN 382 (679)
Q Consensus 303 ~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~ 382 (679)
|++... ++.+|+..+..++..+|+++.+++++.+...
T Consensus 223 peq~~~-------------------------------------------e~~~~l~~~~~~l~~lG~~~~~~~~s~~~~~ 259 (456)
T PRK04173 223 PGTDNE-------------------------------------------WFAYWIELRKNWLLDLGIDPENLRFREHLPE 259 (456)
T ss_pred cChHHH-------------------------------------------HHHHHHHHHHHHHHHcCCCccceEEEecCcc
Confidence 998632 2566888889999999999988998888777
Q ss_pred cccccccCccchhhhccCC--ceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhh
Q psy17941 383 EMAHYACDCWDAECLTSYG--WVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAK 460 (679)
Q Consensus 383 e~~~ya~~~~d~e~~~~~g--~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~ 460 (679)
++++|+..+||++++++.| |.|+.|++.+++|||..|..+++.++.
T Consensus 260 e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~-------------------------------- 307 (456)
T PRK04173 260 ELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLS-------------------------------- 307 (456)
T ss_pred hhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeE--------------------------------
Confidence 8999999999999999888 999999999999999877644333221
Q ss_pred HHHHHhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeee-cccceeEeccceeeccccHHHHHHHHHHhc
Q psy17941 461 TICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKST-KTFHVEEIIPSVIEPSFGIGRIMYALFEHN 539 (679)
Q Consensus 461 ~i~d~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~-~~~~~~~~~P~vi~~s~GIeRll~al~e~~ 539 (679)
|. ...+++.++|+||++|+||+|+++++++++
T Consensus 308 -----------------------------------------------y~~~~~~~~~~~P~vi~~siGieRl~~ail~~~ 340 (456)
T PRK04173 308 -----------------------------------------------YFDDETTGEKYIPYVIEPSAGLDRLLLAFLEDA 340 (456)
T ss_pred -----------------------------------------------EEecCCCCceeeeEEEEecccHHHHHHHHHHHH
Confidence 11 012345668999999999999888888887
Q ss_pred cccCC--CccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEE
Q psy17941 540 FKMRD--GDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGI 617 (679)
Q Consensus 540 ~~~~~--~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~I 617 (679)
++.++ .+++|+++.||+|+||++|+|+|++++++...+|.+|++.||++ ++|++|++ .++|+|+++|++.|+||+|
T Consensus 341 ~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~~e~~~~A~~la~~LR~~-irVelD~~-~slgkkir~A~~~Gip~~I 418 (456)
T PRK04173 341 YTEEELGGGDKRTVLRLPPALAPVKVAVLPLVKKEKLSEKAREIYAELRKD-FNVDYDDS-GSIGKRYRRQDEIGTPFCI 418 (456)
T ss_pred cccccccCCcceeEEECCCcCCCCEEEEEEecCcHHHHHHHHHHHHHHHhc-CEEEEeCC-CCHHHHHHHHHHcCCCEEE
Confidence 76533 46789999999999999999999976324778999999999999 99999965 6999999999999999999
Q ss_pred EEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHH
Q psy17941 618 TIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDL 655 (679)
Q Consensus 618 iVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l 655 (679)
|||++|+ ++|+|+||+|++++|..++++++++.|.++
T Consensus 419 IIG~~El-~~g~VtvR~r~t~eq~~v~l~el~~~l~~~ 455 (456)
T PRK04173 419 TVDFDTL-EDNTVTIRDRDTMEQVRVKIDELKDYLAEK 455 (456)
T ss_pred EECCchh-hCCEEEEEECCCCceEEEeHHHHHHHHHhh
Confidence 9999999 899999999999999999999998887654
No 7
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=2.2e-61 Score=548.35 Aligned_cols=469 Identities=20% Similarity=0.279 Sum_probs=368.8
Q ss_pred HHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCc
Q psy17941 69 KMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLM 148 (679)
Q Consensus 69 ~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m 148 (679)
...+||.|.||+.++ ++|+|+|+|.|++++++|+++++++| .+.|++||.+|+|.+.++|+.||||+.|+++|
T Consensus 21 ~s~~ll~rag~i~~~------~~G~~~~lP~g~rv~~~I~~~i~~~~-~~~G~~ei~~P~l~~~el~~~sg~~~~~~~em 93 (568)
T TIGR00409 21 KSHQLLLRAGFIRRL------GSGLYNWLPLGLRVLKKVENIVREEM-NKDGAIEVLLPALQPAELWQESGRWDTYGPEL 93 (568)
T ss_pred hhHHHHHhCCCcccc------CCceEEECChHHHHHHHHHHHHHHHH-HHcCCEEEECCccchHHHHhhcCCCCccchhc
Confidence 456799999999775 69999999999999999999999999 99999999999999999999999999999999
Q ss_pred eeeC--CCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhh
Q psy17941 149 VKDL--KTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNL 226 (679)
Q Consensus 149 ~~d~--~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnl 226 (679)
|+.. .+.+ ++|.||+||.++.+.+..+.|
T Consensus 94 f~~~dr~~~~----------------------------------l~LrPT~Ee~~t~~~~~~i~s--------------- 124 (568)
T TIGR00409 94 LRLKDRKGRE----------------------------------FVLGPTHEEVITDLARNEIKS--------------- 124 (568)
T ss_pred EEEecCCCCE----------------------------------EEEcCCCcHHHHHHHHHHHhh---------------
Confidence 9943 2222 589999999999887765544
Q ss_pred hhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcc
Q psy17941 227 MFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 227 mf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~ 306 (679)
| ++||+++||||+|||+|++|+.||+|+|||+|+|+|+|+.+++.
T Consensus 125 --------------y---------------------r~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~ 169 (568)
T TIGR00409 125 --------------Y---------------------KQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEES 169 (568)
T ss_pred --------------c---------------------cccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHH
Confidence 3 78999999999999999999999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHHHHHhh-----------ccCCCCce-EEeecccccccccccccHHHHHHHHHHHHHHcCCCccch
Q psy17941 307 SHAKFSDVETTQMMVLYSACN-----------QMDGKPAE-RITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKL 374 (679)
Q Consensus 307 ~~~~~~~v~d~~~~~lf~~~~-----------~~~g~~~~-~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~ 374 (679)
+...|..+.++|. .+|.+++ .|||..|| |+..++.|++.++.|+.|+ |.++++..... .+....
T Consensus 170 a~~e~~~~~~~y~-~if~~LgL~~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~-y~an~e~a~~~--~~~~~~ 245 (568)
T TIGR00409 170 LDATYQKMYQAYS-NIFSRLGLDFRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESD-YAANIELAEAL--APGERN 245 (568)
T ss_pred HHHHHHHHHHHHH-HHHHHhCCcceEEEeccccCCCccceEEeEecCCCceEEEEecCcc-cchhhhhhccc--Cccccc
Confidence 8889999999998 9999996 78999998 9999999999999999888 68888776321 111100
Q ss_pred hhhhccCccccccccCccchhhhccC-----------------C-ceeeeeccccchhhHhHHHHHhC--CcccccccCC
Q psy17941 375 RFRQHMGNEMAHYACDCWDAECLTSY-----------------G-WVECVGCADRSAYDLTQHFKATG--VRLSAEKHLP 434 (679)
Q Consensus 375 ~~r~~~~~e~~~ya~~~~d~e~~~~~-----------------g-~~e~~~~~~r~~~dl~~~~~~s~--~~l~~~~~~~ 434 (679)
.....+ + ...++++.+++.++.+ + ..+.+.+..|+|++++.++-..- .. ....+.
T Consensus 246 ~~~~~~--~-~~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~--~~~~~a 320 (568)
T TIGR00409 246 APTAEL--D-KVDTPNTKTIAELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVA--QVLELA 320 (568)
T ss_pred cccccc--e-eecCCCCCcHHHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccC--cccccC
Confidence 000000 1 2345555555544332 1 11367788899999998873221 10 001233
Q ss_pred CCccceeecccCcccccCc-cccchhhHHHHHhhhcCHhHHHHHHHhh---hcCCcEEEeec-Cceeee-----------
Q psy17941 435 EPQTREIVEPVLNKGIIGK-EFKKDAKTICDALAALDLNSVSAVEESL---NTNGKYELLVD-DKEFVL----------- 498 (679)
Q Consensus 435 ~p~~~~~~~~~~~~~~~G~-~~~~~~~~i~d~L~~~~~~~~~~~~~~l---~~~g~~~~~~~-g~~f~i----------- 498 (679)
.+.++.. ......+++|| ....+++.+.|. .+..+.++. |..|+|..+++ |++|..
T Consensus 321 ~~~~~~~-~~g~~~g~~gpv~~~~~~~i~~D~-------~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~e 392 (568)
T TIGR00409 321 TEEEIFQ-KIASGPGSLGPVNINGGIPVLIDQ-------TVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKE 392 (568)
T ss_pred CHHHHHH-hhCCCCCccCccccccCceEEech-------hhhcccccccccCCCCceeecccccccCCccccchhhhhhc
Confidence 4444432 23466788888 444444545444 134444454 56677777766 666643
Q ss_pred -------------------ccceeEEeeeecccceeEe-----ccceeeccccHH--HHHHHHHHhccccCCCccccccc
Q psy17941 499 -------------------TKDMISIKKSTKTFHVEEI-----IPSVIEPSFGIG--RIMYALFEHNFKMRDGDEQRTYL 552 (679)
Q Consensus 499 -------------------~~~~v~~~~y~~~~~~~~~-----~P~vi~~s~GIe--Rll~al~e~~~~~~~~~~~r~~l 552 (679)
.+.+..+++|++.++.... ..+++|+||||| |++++++|+++|++| +
T Consensus 393 Gd~cp~c~~~l~~~rgIEvGhiF~LG~kYS~~~~~~~~d~~g~~~~~~mgcyGIGvsRli~aiie~~~D~~G-------l 465 (568)
T TIGR00409 393 GDPSPDGQGTLKIARGIEVGHIFQLGTKYSEALKATFLDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDERG-------I 465 (568)
T ss_pred cCCCCCCCCcccccceEEEEEeccchhhhHHhcCCEEECCCCCEEEEEEeCCcchHHHHHHHHHHHhCccCC-------C
Confidence 2233334889988775433 234668999875 999999999999888 9
Q ss_pred cCCCCCCCceEEEEecCCCC-ChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEE
Q psy17941 553 ALPPLVAPLKASILPLSSNP-EFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVT 631 (679)
Q Consensus 553 ~~P~~laP~~V~Vi~l~~~~-e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vt 631 (679)
.||+++||++|+|+|+..++ +..+.|.+|++.|+++|++|.+|+++.++|+||++||.+|+||+||||++++ ++|+|+
T Consensus 466 ~wP~~iAP~qV~Iip~~~~~~~~~~~a~~l~~~L~~~gi~v~~DDr~~~~G~K~~dadliGiP~~i~vG~~~l-~~~~Ve 544 (568)
T TIGR00409 466 IWPKAIAPYDVVIVVMNMKDEEQQQLAEELYSELLAQGVDVLLDDRNERAGVKFADSELIGIPLRVVVGKKNL-DNGEIE 544 (568)
T ss_pred cCChhhCCeEEEEEEcCCChHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHhhhhcCCCEEEEECCCcc-cCCeEE
Confidence 99999999999999996543 5778999999999999999999999999999999999999999999999999 799999
Q ss_pred EEECCCCceEEEehHHHHHHHH
Q psy17941 632 LRERDSMTQVRVKVNEVASVIK 653 (679)
Q Consensus 632 lr~r~t~~q~~v~i~el~~~l~ 653 (679)
|++|+|+++..|+++++++.|.
T Consensus 545 i~~R~~~~~~~v~~~~l~~~i~ 566 (568)
T TIGR00409 545 VKKRRNGEKQLIKKDELVECLE 566 (568)
T ss_pred EEEcCCCceEEEEHHHHHHHHh
Confidence 9999999999999999998775
No 8
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-58 Score=528.83 Aligned_cols=466 Identities=22% Similarity=0.314 Sum_probs=354.3
Q ss_pred HHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCc
Q psy17941 69 KMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLM 148 (679)
Q Consensus 69 ~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m 148 (679)
...+||.|.||+.++ ++|+|+|+|.|++++++|+++++++| .++||+||.||+|.+.++|++||||+.|.++|
T Consensus 21 ~s~~ll~~ag~i~~~------~~G~~~~lP~g~~~~~~i~~~i~~~~-~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~em 93 (565)
T PRK09194 21 ISHQLLLRAGYIRKL------ASGIYTYLPLGLRVLRKIENIVREEM-NKIGAQEVLMPALQPAELWQESGRWEEYGPEL 93 (565)
T ss_pred hhHHHHHhCCCcccc------CCCeeEECccHHHHHHHHHHHHHHHH-HHcCCEEEECcccCcHHHHhhcCCccccchhc
Confidence 345699999999775 69999999999999999999999999 99999999999999999999999999999999
Q ss_pred eeeCCC-CcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhh
Q psy17941 149 VKDLKT-GECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLM 227 (679)
Q Consensus 149 ~~d~~~-~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlm 227 (679)
|+.... ++ .++|.||+|++++.+.+..+.|
T Consensus 94 f~~~d~~~~---------------------------------~l~LrPt~e~~~~~~~~~~~~s---------------- 124 (565)
T PRK09194 94 LRLKDRHGR---------------------------------DFVLGPTHEEVITDLVRNEIKS---------------- 124 (565)
T ss_pred eEEecCCCC---------------------------------EEEECCCChHHHHHHHHhhhhh----------------
Confidence 985322 22 1589999999999888876664
Q ss_pred hhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcch
Q psy17941 228 FATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKS 307 (679)
Q Consensus 228 f~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~ 307 (679)
| ++||+++||||++||+|++|+.||+|+|||+|+|+|+|+.+++.+
T Consensus 125 -------------~---------------------~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a 170 (565)
T PRK09194 125 -------------Y---------------------KQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESL 170 (565)
T ss_pred -------------c---------------------ccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHH
Confidence 4 889999999999999999999999999999999999999998888
Q ss_pred hhhHHHHHHHHHHHHHHHhh-----------ccCCCCce-EEeecccccccccccccHHHHHHHHHHHHHHcCCCccchh
Q psy17941 308 HAKFSDVETTQMMVLYSACN-----------QMDGKPAE-RITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLR 375 (679)
Q Consensus 308 ~~~~~~v~d~~~~~lf~~~~-----------~~~g~~~~-~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~ 375 (679)
...|..+.+++. .+|.+++ .|||..|| |+..++.|++.++.|+.|+ |.++++..-. . .++. ..
T Consensus 171 ~~~~~~~~~~~~-~i~~~lgl~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~-~~~n~e~a~~-~-~~~~-~~ 245 (565)
T PRK09194 171 DETYDAMYQAYS-RIFDRLGLDFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESD-YAANIEKAEA-L-PPPR-AA 245 (565)
T ss_pred HHHHHHHHHHHH-HHHHHhCCccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCC-cchhhhhhcc-c-CCCC-cc
Confidence 788999999998 9999987 77999998 9999999999999999999 6888887632 1 1111 00
Q ss_pred hhhccCccccccccCccchhhh-----------------ccCCceeeeeccccchhhHhHHH--HHhCCcccccccCCCC
Q psy17941 376 FRQHMGNEMAHYACDCWDAECL-----------------TSYGWVECVGCADRSAYDLTQHF--KATGVRLSAEKHLPEP 436 (679)
Q Consensus 376 ~r~~~~~e~~~ya~~~~d~e~~-----------------~~~g~~e~~~~~~r~~~dl~~~~--~~s~~~l~~~~~~~~p 436 (679)
....+ .. +..+.+.+++.. ...+ ..+.+..|++.+++.++ +..|.. ..++..+
T Consensus 246 ~~~~~-~~--v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~--~~~lvvvp~d~~vn~~kl~~~lg~~---~l~~a~~ 317 (565)
T PRK09194 246 AEEAL-EK--VDTPNAKTIEELAEFLNVPAEKTVKTLLVKADG--ELVAVLVRGDHELNEVKLENLLGAA---PLELATE 317 (565)
T ss_pred ccccc-ee--ecCCCCCcHHHHHHHhCCCHHHeeEEEEEEeCC--eEEEEEeecchhhhHHHHHhhcCCc---ccccCCH
Confidence 00000 00 011111111111 1112 46677778888888776 222221 1122333
Q ss_pred ccceeecccCcccccCc-cccchhhHHHHHhhhcCHhHHHHHHHhh---hcCCcEEEeec-Cceeee-------------
Q psy17941 437 QTREIVEPVLNKGIIGK-EFKKDAKTICDALAALDLNSVSAVEESL---NTNGKYELLVD-DKEFVL------------- 498 (679)
Q Consensus 437 ~~~~~~~~~~~~~~~G~-~~~~~~~~i~d~L~~~~~~~~~~~~~~l---~~~g~~~~~~~-g~~f~i------------- 498 (679)
.++.. ..+...+++|| ....+++.++|.- +....+++ |..|.|.++++ +++|..
T Consensus 318 eel~~-~~g~~~G~v~P~Gl~~~v~viiD~s-------l~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~ 389 (565)
T PRK09194 318 EEIRA-ALGAVPGFLGPVGLPKDVPIIADRS-------VADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGD 389 (565)
T ss_pred HHHHH-hhCCCCCccCcccCCCCceEEEecc-------ccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCC
Confidence 33322 22445566666 3333444454431 11222222 44556665554 555432
Q ss_pred -----------------ccceeEEeeeecccceeEe-----ccceeeccccHH--HHHHHHHHhccccCCCccccccccC
Q psy17941 499 -----------------TKDMISIKKSTKTFHVEEI-----IPSVIEPSFGIG--RIMYALFEHNFKMRDGDEQRTYLAL 554 (679)
Q Consensus 499 -----------------~~~~v~~~~y~~~~~~~~~-----~P~vi~~s~GIe--Rll~al~e~~~~~~~~~~~r~~l~~ 554 (679)
.+.+..+++|++.++.... ..+++|+||||| ||++++++++.|+.| +.|
T Consensus 390 ~c~~c~~~l~~~~~iEvGh~f~lG~~ys~~~~~~~~~~~g~~~~~~m~~~gIGv~Rli~al~e~~~d~~g-------l~~ 462 (565)
T PRK09194 390 PSPDGGGTLKIARGIEVGHIFQLGTKYSEAMNATVLDENGKAQPLIMGCYGIGVSRLVAAAIEQNHDEKG-------IIW 462 (565)
T ss_pred CCCCCCceeEEeeeEEEEEEecCCcchhhccCCEEECCCCCEEeEEEeeEechHHHHHHHHHHhhccccC-------ccC
Confidence 2333334888887764432 234567887765 999999999998888 899
Q ss_pred CCCCCCceEEEEecC-CCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEE
Q psy17941 555 PPLVAPLKASILPLS-SNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLR 633 (679)
Q Consensus 555 P~~laP~~V~Vi~l~-~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr 633 (679)
|+++||++|+|+|++ .+++..++|.+|++.|+++||+|++|+++.++|+||++|+++|+||+||||++|+ ++|+|+||
T Consensus 463 P~~iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Ddr~~~~g~k~~~ad~~GiP~~iiiG~~e~-~~~~v~v~ 541 (565)
T PRK09194 463 PKAIAPFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRKERPGVKFADADLIGIPHRIVVGDRGL-AEGIVEYK 541 (565)
T ss_pred CCccCCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEECCCCCHHHHHHHHHhcCCCEEEEEcCccc-cCCeEEEE
Confidence 999999999999997 3345788999999999999999999999999999999999999999999999999 79999999
Q ss_pred ECCCCceEEEehHHHHHHHH
Q psy17941 634 ERDSMTQVRVKVNEVASVIK 653 (679)
Q Consensus 634 ~r~t~~q~~v~i~el~~~l~ 653 (679)
+|+|++|..|+++++++.|.
T Consensus 542 ~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 542 DRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred ECCCCceEEEeHHHHHHHHH
Confidence 99999999999999998775
No 9
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.5e-53 Score=470.38 Aligned_cols=395 Identities=21% Similarity=0.281 Sum_probs=299.0
Q ss_pred HHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCc
Q psy17941 69 KMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLM 148 (679)
Q Consensus 69 ~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m 148 (679)
...++|.|.||+.+. ++|+|+|+|.|++++++|++++++++ .+.|++||.||+|.+.++|+.||||+.|.++|
T Consensus 21 ~~~~ll~r~g~~~~~------~~G~~~~lP~g~~i~~~i~~~i~~~~-~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~em 93 (439)
T PRK12325 21 VSHRLMLRAGMIRQQ------AAGIYSWLPLGLKVLKKIENIVREEQ-NRAGAIEILMPTIQPADLWRESGRYDAYGKEM 93 (439)
T ss_pred HHHHHHHHcCCcccc------CCceEEECCcHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHHhhcCCccccchhh
Confidence 345689999998664 69999999999999999999999999 99999999999999999999999999999999
Q ss_pred eeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhh
Q psy17941 149 VKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMF 228 (679)
Q Consensus 149 ~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf 228 (679)
|+....++ + .++|.||+|+++..+.+..+.|
T Consensus 94 f~~~d~~~----~----------------------------~~~L~Pt~e~~~~~~~~~~~~s----------------- 124 (439)
T PRK12325 94 LRIKDRHD----R----------------------------EMLYGPTNEEMITDIFRSYVKS----------------- 124 (439)
T ss_pred eEEecCCC----C----------------------------EEEEcCCCcHHHHHHHHHHhhh-----------------
Confidence 98533211 0 1589999999999888876665
Q ss_pred hcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchh
Q psy17941 229 ATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSH 308 (679)
Q Consensus 229 ~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~ 308 (679)
| ++||+++||+|++||+|.+|+.||+|+|||+|.|+|+||.+.+.+.
T Consensus 125 ------------y---------------------rdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~ 171 (439)
T PRK12325 125 ------------Y---------------------KDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGAR 171 (439)
T ss_pred ------------c---------------------hhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHH
Confidence 5 8999999999999999999999999999999999999999877777
Q ss_pred hhHHHHHHHHHHHHHHHhh-----------ccCCCCce-EEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhh
Q psy17941 309 AKFSDVETTQMMVLYSACN-----------QMDGKPAE-RITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRF 376 (679)
Q Consensus 309 ~~~~~v~d~~~~~lf~~~~-----------~~~g~~~~-~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~ 376 (679)
..|..+.+++. .+|.+++ .|||..|| |+.+++.|++.++.|+.|. +.. ..|-
T Consensus 172 ~~~~~~~~~~~-~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~------~~~--~~~~------- 235 (439)
T PRK12325 172 HSYNRMFVAYL-RTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFL------DLL--VPGE------- 235 (439)
T ss_pred HHHHHHHHHHH-HHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCch------hhc--cCCC-------
Confidence 88999999998 9998876 67899998 9999999999999988652 110 0110
Q ss_pred hhccCccccccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCccccc-Cccc
Q psy17941 377 RQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGII-GKEF 455 (679)
Q Consensus 377 r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~-G~~~ 455 (679)
+ ..|+-.. |.......+..+.... .......++ ||+.
T Consensus 236 ------~------~~~~~~~-------------------l~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 273 (439)
T PRK12325 236 ------D------IDFDVAD-------------------LQPIVDEWTSLYAATE-----------EMHDEAAFAAVPEE 273 (439)
T ss_pred ------c------ccCCHHH-------------------HHHHHhhhcccccchh-----------hhhccCCCCcCCCc
Confidence 0 0011000 0000000000000000 000111222 3221
Q ss_pred cchhhHHHHHhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccc-------eeEeccceeeccccH
Q psy17941 456 KKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFH-------VEEIIPSVIEPSFGI 528 (679)
Q Consensus 456 ~~~~~~i~d~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~-------~~~~~P~vi~~s~GI 528 (679)
. | . ... .+++ |..|.+. ++|++.++ +.. . .++|.||||
T Consensus 274 ~---------~---~------------~~~--~iev-g~~~~lg------~~ys~~f~~~y~d~~g~~-~-~i~~~~~Gi 318 (439)
T PRK12325 274 R---------R---L------------SAR--GIEV-GHIFYFG------TKYSEPMNAKVQGPDGKE-V-PVHMGSYGI 318 (439)
T ss_pred c---------e---e------------ecc--eEEE-EeeecCc------ccccHhcCCEEECCCCCE-E-eEEEeeeEC
Confidence 0 0 0 000 0011 1122221 22222222 222 2 266777764
Q ss_pred --HHHHHHHHHhccccCCCccccccccCCCCCCCceEEEEecCC-CCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHH
Q psy17941 529 --GRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSS-NPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRY 605 (679)
Q Consensus 529 --eRll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~-~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~ 605 (679)
+|++++|+|++.|+.| +.||+++||++|+|+|+.. +++..+++.+|++.||++||+|++|+++.++|+|+
T Consensus 319 GieRli~~l~e~~~d~~g-------~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~~~lg~ki 391 (439)
T PRK12325 319 GVSRLVAAIIEASHDDKG-------IIWPESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDTDERPGAKF 391 (439)
T ss_pred CHHHHHHHHHHHhCccCC-------CcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHhHHH
Confidence 6999999999888877 8999999999999999942 24578899999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHH
Q psy17941 606 ARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIK 653 (679)
Q Consensus 606 k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~ 653 (679)
++|+++|+||+||||++|+ ++|+|+||+|+++++..++++++++.|.
T Consensus 392 ~~a~~~giP~~iiVG~~e~-~~~~V~vr~r~~~~~~~v~~~el~~~i~ 438 (439)
T PRK12325 392 ATMDLIGLPWQIIVGPKGL-AEGKVELKDRKTGEREELSVEAAINRLT 438 (439)
T ss_pred HHHHHcCCCEEEEECCccc-ccCeEEEEEcCCCceEEEEHHHHHHHHh
Confidence 9999999999999999999 8999999999999999999999987764
No 10
>KOG2324|consensus
Probab=100.00 E-value=6e-52 Score=424.99 Aligned_cols=373 Identities=20% Similarity=0.297 Sum_probs=294.4
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCce
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMV 149 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~ 149 (679)
...+|...|||.|++ +|+|.|+|.|.|+.+++.+.++..| ...|.++|..|+|.++++|++||+|+..+.+||
T Consensus 27 aq~LL~e~GfI~ps~------~G~yq~LPlg~R~~~K~~~~l~~~m-qs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~ 99 (457)
T KOG2324|consen 27 AQELLQEVGFIRPSS------PGLYQLLPLGLRVLNKLCRLLDNEM-QSGGAQKISLPILSSKELWEKTGRWDAMGSELF 99 (457)
T ss_pred HHHHHHHhCccccCC------CCceeeccchHHHHHHHHHHHHHHH-HhccCeeEeecccChHHHHHhcCcccccchhhe
Confidence 445899999999984 9999999999999999999999999 889999999999999999999999999999988
Q ss_pred e--eCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhh
Q psy17941 150 K--DLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLM 227 (679)
Q Consensus 150 ~--d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlm 227 (679)
+ |+++++ +|+.||+||.+|.+....+.
T Consensus 100 rl~Dr~gkq----------------------------------~cL~pThEE~iT~lmat~~~----------------- 128 (457)
T KOG2324|consen 100 RLHDRKGKQ----------------------------------MCLTPTHEEDITALMATYIP----------------- 128 (457)
T ss_pred EeeccCCCE----------------------------------eccCCchHHHHHHHHHhcCc-----------------
Confidence 7 777665 79999999999988775332
Q ss_pred hhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcch
Q psy17941 228 FATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKS 307 (679)
Q Consensus 228 f~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~ 307 (679)
-+| ++||+++||||++||+|++||.||+|.|||.|+|+|+|+.+++.+
T Consensus 129 -----------lsy---------------------kqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA 176 (457)
T KOG2324|consen 129 -----------LSY---------------------KQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETA 176 (457)
T ss_pred -----------ccc---------------------ccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHH
Confidence 135 999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhh-----------ccCCCCce-EEeecccccccccccccHHHHHHHHHHHHHHcCCCccchh
Q psy17941 308 HAKFSDVETTQMMVLYSACN-----------QMDGKPAE-RITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLR 375 (679)
Q Consensus 308 ~~~~~~v~d~~~~~lf~~~~-----------~~~g~~~~-~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~ 375 (679)
..+|..|.++|- +||..++ .+||..|| |+.+.+.|||.+..|+.|+ |..+-+.+ .
T Consensus 177 ~qTy~~v~~aY~-~iFkqL~~pfVkv~AdsG~iGG~vShEfhl~~~vgED~l~~C~~C~-~s~n~e~~-----------~ 243 (457)
T KOG2324|consen 177 QQTYQLVDQAYD-RIFKQLGLPFVKVWADSGDIGGEVSHEFHLIHPVGEDTLMSCPSCG-YSKNSEDL-----------D 243 (457)
T ss_pred HHHHHHHHHHHH-HHHHHcCCCeEEEeecccccCceeeeeEeccCccCccceeecCcCC-ccCchhhh-----------c
Confidence 999999999998 9999885 88999999 9999999999999999998 33332211 0
Q ss_pred hhhccCccccccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccc
Q psy17941 376 FRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEF 455 (679)
Q Consensus 376 ~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~ 455 (679)
+.+. ..|..++ +-+|..
T Consensus 244 ~sk~---------~~Cp~C~-----------------~~~L~~------------------------------------- 260 (457)
T KOG2324|consen 244 LSKI---------ASCPKCN-----------------EGRLTK------------------------------------- 260 (457)
T ss_pred CCcc---------ccCCccc-----------------CCCccc-------------------------------------
Confidence 0000 0011100 000000
Q ss_pred cchhhHHHHHhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEe----cc-ceeeccccHH-
Q psy17941 456 KKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEI----IP-SVIEPSFGIG- 529 (679)
Q Consensus 456 ~~~~~~i~d~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~----~P-~vi~~s~GIe- 529 (679)
-+..++.+.+..+++|++.+++.+. .| .+.|+|||||
T Consensus 261 -------------------------------------~~~IEVgHtF~LG~kYS~~lna~f~~~~gKpe~l~MgCyGIGV 303 (457)
T KOG2324|consen 261 -------------------------------------TKSIEVGHTFLLGTKYSKPLNAKFVNVEGKPEFLHMGCYGIGV 303 (457)
T ss_pred -------------------------------------ccceEEEEEEEeccccccccCceeeeecCCcceEEecceeccH
Confidence 0112333444445677777766533 22 3668999988
Q ss_pred -HHHHHHHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHC------CCeEEEeCC-CCCH
Q psy17941 530 -RIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQN------GISFKVDDS-GGSI 601 (679)
Q Consensus 530 -Rll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~------Gi~v~~D~~-~~sl 601 (679)
|+++|.+|-..++.+ ++||..+||++|++++..+. ...+.+.+++.+|-.. --.+.+|++ ..++
T Consensus 304 tRllaAa~evls~~~~-------lrwP~~iAPy~vcli~pk~~-~~~q~~~ev~~el~~~~~~~~l~~~iLlddr~~lti 375 (457)
T KOG2324|consen 304 TRLLAAAAEVLSDDKG-------LRWPSLIAPYKVCLIGPKKG-SKSQRAQEVISELLNDEAVGNLHGEILLDDREELTI 375 (457)
T ss_pred HHHHHHHHHHhccccc-------cccccccCcceeEEeccCCc-chhhhHHHHHHHhhcchhhhhhccceeccchhhhhh
Confidence 999999998777777 99999999999976655442 2345556666655432 123567777 7799
Q ss_pred HHHHHHHHHhCCCEEEEEe-CCCCCCCCeEEEEECCCCceEEEehHHHHHHHHH
Q psy17941 602 GKRYARTDEIAIPFGITID-FDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKD 654 (679)
Q Consensus 602 gkq~k~Ad~~Gip~~IiVG-~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~ 654 (679)
|+|+++|+++|+||+|||| .... .+..++|+-+.+|+...+..+.+.+.+..
T Consensus 376 G~Ri~dA~~lG~PfviVvg~s~~~-~~~~~EV~~~~~ge~~~l~~~~~~~l~~~ 428 (457)
T KOG2324|consen 376 GKRIKDANRLGIPFVIVVGNSASW-DNPEIEVRTIRWGESAELDKDGFMKLLSE 428 (457)
T ss_pred HHhhhhHHhcCCCEEEEEcccccC-CCceEEEEEeecCceeccchhhHHHHhhh
Confidence 9999999999999999999 5555 68899999998999888888887766543
No 11
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.2e-49 Score=441.69 Aligned_cols=391 Identities=16% Similarity=0.238 Sum_probs=284.3
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCce
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMV 149 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~ 149 (679)
+..+.++.+++..+-+ .++|+++|+|.|+++++.|+++|++.+ .++||++|.||+|...++|+.||||++|.++||
T Consensus 140 Hr~lg~~l~lf~~~~~---~~~G~~~~lP~G~~i~~~L~~~~r~~~-~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf 215 (545)
T PRK14799 140 HRLIGEKLDLFSFHEE---AGSGLVLFHPKGQTIRNELIAFMREIN-DSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLI 215 (545)
T ss_pred HHHHHHHcCCcccccc---cCCcceEEcChHHHHHHHHHHHHHHHH-HHcCCeEEECCccchHHHHhhccccccchhhcc
Confidence 4557777666533222 279999999999999999999999999 999999999999999999999999999999998
Q ss_pred eeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhh
Q psy17941 150 KDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFA 229 (679)
Q Consensus 150 ~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~ 229 (679)
....+++
T Consensus 216 ~~~~~~e------------------------------------------------------------------------- 222 (545)
T PRK14799 216 VFNMEGD------------------------------------------------------------------------- 222 (545)
T ss_pred eeeccCc-------------------------------------------------------------------------
Confidence 7422221
Q ss_pred cccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCC-CCcccccceeEeeEEEEeCCCcchh
Q psy17941 230 TQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPR-SGLIRVREFTMAEIEHFCDPTDKSH 308 (679)
Q Consensus 230 ~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr-~Gl~R~REF~q~e~~~F~~~~~~~~ 308 (679)
..+|||..+.++.+.|+.... +.++||+++||+|+|||+|.+++ +||+|+|||+|+|+|+||.+++...
T Consensus 223 ---------~~~LrPm~cp~~~~~~~~~~~-SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~ 292 (545)
T PRK14799 223 ---------EYGVKPMNCPAHILIYKSKPR-TYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLRE 292 (545)
T ss_pred ---------eEEeccCCCHHHHHHHhcccc-ChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHH
Confidence 236777777777766665432 33799999999999999998885 9999999999999999999876531
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccc
Q psy17941 309 AKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYA 388 (679)
Q Consensus 309 ~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya 388 (679)
++ .. ++..+..++..+|++...+.++.....+-....
T Consensus 293 -------E~-----------------------------------~~-~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~ 329 (545)
T PRK14799 293 -------EI-----------------------------------KM-LISKTVEVWHKFGFKDDDIKPYLSTRPDESIGS 329 (545)
T ss_pred -------HH-----------------------------------HH-HHHHHHHHHHHhCCCcccEEEEEEcChhhhcCC
Confidence 11 11 344556677888886332222111100100111
Q ss_pred cCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhh
Q psy17941 389 CDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAA 468 (679)
Q Consensus 389 ~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~ 468 (679)
.+.||- ..-.+.......|.++.. .....+++||++.. .+.|++++
T Consensus 330 ~~~wdk-----------------a~~~l~~~L~~~gl~~~~--------------~~g~gafygpkiD~---~v~dalgr 375 (545)
T PRK14799 330 DELWEK-----------------ATNALISALQESGLKFGI--------------KEKEGAFYGPKIDF---EIRDSLGR 375 (545)
T ss_pred HHHHHH-----------------HHHHHHHHHHHcCCCeEE--------------ecceeccccCccce---EehhhcCc
Confidence 111221 111122222334444321 22467788886643 23566544
Q ss_pred cCHhHHHHHHHhhhcCCcEEEeec-CceeeeccceeEEeeeecccceeEeccceeecc--ccHHHHHHHHHHhccccCCC
Q psy17941 469 LDLNSVSAVEESLNTNGKYELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPS--FGIGRIMYALFEHNFKMRDG 545 (679)
Q Consensus 469 ~~~~~~~~~~~~l~~~g~~~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s--~GIeRll~al~e~~~~~~~~ 545 (679)
.. ++++++++.+ +++|++. |... ++....|.+++.+ .|+||++++|+++..
T Consensus 376 ~~------------q~~Tiqldf~lp~rf~Le--------y~~~-~~~~~~pv~ihr~~~GgiERli~iL~e~~~----- 429 (545)
T PRK14799 376 WW------------QLSTIQVDFNLPERFKLE--------YIDK-DGIKKRPVMVHRAIYGSIDRFVAILLEHFK----- 429 (545)
T ss_pred hh------------hhhhhhhhcCcccccceE--------EEcC-CCCCcccEEEEccCCCCHHHHHHHHHHHcC-----
Confidence 32 2344444433 5556543 4322 3344578787754 489999998888631
Q ss_pred ccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCC
Q psy17941 546 DEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLK 625 (679)
Q Consensus 546 ~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~ 625 (679)
..||+|++|.+|+|+|+++ +..++|.+|++.||++|++|++|+++.++++|+++|++.|+||+||||++|+
T Consensus 430 ------G~~P~wlaP~qV~Iipi~e--~~~~~A~~Ia~~LR~~GirVelD~~~~~lgkkir~A~k~gip~viIIG~~E~- 500 (545)
T PRK14799 430 ------GKLPTWLSSVQVRVLPITD--EVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEA- 500 (545)
T ss_pred ------CCCCCCCCCceEEEEEcCH--HHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEChhHh-
Confidence 3699999999999999975 3788999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEehHHHHHHHHHHHhcc
Q psy17941 626 EPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659 (679)
Q Consensus 626 ~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~ 659 (679)
++|+|+||+|++++|..++++++++.|.+.+..+
T Consensus 501 e~~~VtVR~r~~~eq~~v~l~eli~~l~~~i~~~ 534 (545)
T PRK14799 501 SEGTVTVRARGNIEVRNVKFEKFLELLITEIAQR 534 (545)
T ss_pred hcCeEEEEECCCCceEEEcHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999998887754
No 12
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=8.5e-48 Score=439.28 Aligned_cols=404 Identities=22% Similarity=0.314 Sum_probs=292.2
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCce
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMV 149 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~ 149 (679)
+.+++++.+++.... +..+|++.|+|.|.+|+++|++++++.+ .+.|+++|.||++...++|+.||||++|.++||
T Consensus 199 H~~Lg~~~~L~d~~~---~s~~G~~~~~P~G~~i~~~L~~~~~~~~-~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my 274 (613)
T PRK03991 199 HVKLMREKELADYEP---ASDVGHMRYYPKGRLIRDLLEDYVYNLV-VELGAMPVETPIMYDLSHPAIREHADKFGERQY 274 (613)
T ss_pred HHHHHHHCCCccccc---ccCeeeEEEEcHHHHHHHHHHHHHHHHH-HHCCCEEEECCeecChhHHhhcccccccchhce
Confidence 455777777653211 1368999999999999999999999999 899999999999999999999999999999998
Q ss_pred eeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhh
Q psy17941 150 KDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFA 229 (679)
Q Consensus 150 ~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~ 229 (679)
+...+++
T Consensus 275 ~v~~~~e------------------------------------------------------------------------- 281 (613)
T PRK03991 275 RVKSDKK------------------------------------------------------------------------- 281 (613)
T ss_pred EecCCCc-------------------------------------------------------------------------
Confidence 8533211
Q ss_pred cccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccc-cccCCCCCC-CCcccccceeEeeEEEEeCCCcch
Q psy17941 230 TQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGN-AFRNEISPR-SGLIRVREFTMAEIEHFCDPTDKS 307 (679)
Q Consensus 230 ~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~-~FR~E~~pr-~Gl~R~REF~q~e~~~F~~~~~~~ 307 (679)
..+|||.+++|+|..|++... +.++||+++||+|+ |||+|++|+ .||+|+|||+|.|+|+||.|.+.+
T Consensus 282 ---------~l~Lrp~~c~~~~~~~~~~~~-SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa 351 (613)
T PRK03991 282 ---------DLMLRFAACFGQFLMLKDMTI-SYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQA 351 (613)
T ss_pred ---------eEEEecCCCHHHHHHHhCCcC-chhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHH
Confidence 248999999999999987763 55799999999999 999999996 999999999999999999974433
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCcccccc
Q psy17941 308 HAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHY 387 (679)
Q Consensus 308 ~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~y 387 (679)
...|..+ +..+..++..+|+++.... + .+
T Consensus 352 ~~e~~~~------------------------------------------l~~~~~i~~~lGl~~~~~~-~--~t------ 380 (613)
T PRK03991 352 MEEFEKQ------------------------------------------YEMILETGEDLGRDYEVAI-R--FT------ 380 (613)
T ss_pred HHHHHHH------------------------------------------HHHHHHHHHHcCCCeEEEe-c--CH------
Confidence 3333333 3334455566777644221 0 00
Q ss_pred ccCccc-hhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHh
Q psy17941 388 ACDCWD-AECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDAL 466 (679)
Q Consensus 388 a~~~~d-~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L 466 (679)
.+-|+ .+ .| |.......|.++.. + .....+.++|+++... +.|.+
T Consensus 381 -~df~~~~~-----~~-------------l~~~l~~~g~~~~~----------~--~~~g~~~~yg~kie~~---~~d~~ 426 (613)
T PRK03991 381 -EDFYEENK-----DW-------------IVELVKREGKPVLL----------E--ILPERKHYWVLKVEFA---FIDSL 426 (613)
T ss_pred -HHHhhhHH-----HH-------------HHHHHHHcCCCEEe----------c--ccCCccccCcCcEEEE---EeCCC
Confidence 01111 11 12 11111122332211 0 0123445666655321 22333
Q ss_pred hhcCHhHHHHHHHhhhcCCcEEEeec-CceeeeccceeEEeeeecccceeEeccceeecc-cc-HHHHHHHHHHhccccC
Q psy17941 467 AALDLNSVSAVEESLNTNGKYELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPS-FG-IGRIMYALFEHNFKMR 543 (679)
Q Consensus 467 ~~~~~~~~~~~~~~l~~~g~~~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s-~G-IeRll~al~e~~~~~~ 543 (679)
++.- ++|+++++.. .++|+++ |... +++...|.+++.+ +| ++|+|++++|++.+..
T Consensus 427 gr~~------------q~~T~qld~~~~~~f~l~--------y~d~-~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~ 485 (613)
T PRK03991 427 GRPI------------ENPTVQIDVENAERFGIK--------YVDE-NGEEKYPIILHCSPTGSIERVIYALLEKAAKEE 485 (613)
T ss_pred CCEE------------EEeeeecCcccchhCCCE--------EECC-CCCEeeCEEEEECCEeHHHHHHHHHHHHhCCcc
Confidence 2211 2344444432 4556554 4332 3444468776532 45 9999999999987652
Q ss_pred CCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCC
Q psy17941 544 DGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDT 623 (679)
Q Consensus 544 ~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~E 623 (679)
+++.++.||+|+||+||+|+|+++ +..++|.+|++.||++|++|++|+++.++|+|+++|+++|+||+||||++|
T Consensus 486 ---~~g~gl~~P~~lAP~qV~IIpi~e--~~~~~A~eIa~~Lr~~GirV~lDdr~~slgkKir~A~~~GiP~iIVIG~kE 560 (613)
T PRK03991 486 ---EEGKVPMLPTWLSPTQVRVIPVSE--RHLDYAEEVADKLEAAGIRVDVDDRDESLGKKIRDAGKEWIPYVVVIGDKE 560 (613)
T ss_pred ---ccCceeEcCccccCceEEEEEeCH--HHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcch
Confidence 133458999999999999999964 378999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEECCCCceEEEehHHHHHHHHHHHhccc----chHHHHccCCCc
Q psy17941 624 LKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKI----TWEDVQSKYPKF 672 (679)
Q Consensus 624 l~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~~----~~~~~~~~~~~~ 672 (679)
+ ++|+|+||+|++++|..++++++++.|.+++++++ +-....++=|.|
T Consensus 561 l-e~g~VtVr~R~t~eq~~v~l~eli~~l~~~~~~~p~~~~~~~~~~s~~p~~ 612 (613)
T PRK03991 561 M-ESGKLTVTIREESEKVEMTLEELIERIKEETKGYPYRPLPLPRLLSKRPKF 612 (613)
T ss_pred h-hCCeEEEEECCCCceEEeeHHHHHHHHHHHHhcCCCCCCCcChhhhcCCCC
Confidence 9 89999999999999999999999999998887643 333444444443
No 13
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-49 Score=435.69 Aligned_cols=452 Identities=18% Similarity=0.220 Sum_probs=325.5
Q ss_pred HHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCc
Q psy17941 69 KMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLM 148 (679)
Q Consensus 69 ~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m 148 (679)
-..+||.|.||+.+. ++|+|.|+|+|.+++++|++++|+.| ++.|.+||..|+|.|.++|+.||||+.|+++|
T Consensus 21 ~sh~ll~rAg~i~~~------~~G~y~~lP~g~rv~~kI~~iir~em-~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El 93 (500)
T COG0442 21 WSHQLLLRAGMIRKP------VKGLYVWLPLGLRVLEKIENIIREEM-DKIGAQEVLFPTLIPAELWKESGRWEGFGPEL 93 (500)
T ss_pred HHHHHHHhcCceecc------cCceEEECccHHHHHHHHHHHHHHHH-HhcCceEEechhcCHHHHHHHhChhhhcchhh
Confidence 356799999999874 69999999999999999999999999 99999999999999999999999999999999
Q ss_pred eeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhh
Q psy17941 149 VKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMF 228 (679)
Q Consensus 149 ~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf 228 (679)
|+..+.|+. .++++||+||+++.+.+..|+|
T Consensus 94 ~~v~drg~~--------------------------------~l~L~PTsEe~it~~~~~~i~S----------------- 124 (500)
T COG0442 94 FRVKDRGDR--------------------------------PLALRPTSEEVITDMFRKWIRS----------------- 124 (500)
T ss_pred EEEEccCCc--------------------------------eeeeCCCcHHHHHHHHHHHhhh-----------------
Confidence 996554431 2689999999999999988887
Q ss_pred hcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchh
Q psy17941 229 ATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSH 308 (679)
Q Consensus 229 ~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~ 308 (679)
| ++||+.+|||+++||+|++||+||+|.|||+|+|+|+|+.+.+++.
T Consensus 125 ------------Y---------------------kdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~ 171 (500)
T COG0442 125 ------------Y---------------------KDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAE 171 (500)
T ss_pred ------------h---------------------hhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHH
Confidence 6 9999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhh-----------ccCCCCce-EEeec-ccccccccccccHHHHHHHHHHHHHHcCCCccchh
Q psy17941 309 AKFSDVETTQMMVLYSACN-----------QMDGKPAE-RITIG-EAVRSNLVANETLGYFMARIQKFMISVGIDPEKLR 375 (679)
Q Consensus 309 ~~~~~v~d~~~~~lf~~~~-----------~~~g~~~~-~~~~~-~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~ 375 (679)
++|..+.++|. +||.+++ .+||..|+ |+++. +.+++.+..|.. |.++.+... ..+++....
T Consensus 172 ~~y~~~~~~Y~-~if~~i~l~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~---y~aN~e~a~--~~~~~~~~~ 245 (500)
T COG0442 172 ETYEKMLDAYS-RIFLRLPLIFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHH---YGANFEKAF--IDIKFEDEE 245 (500)
T ss_pred HHHHHHHHHHH-HHHHhCCceEEeecccCCCCCCccceEEEEEccCCCccEEEEecc---hHHhHHHhc--cCCCccccc
Confidence 99999999999 9998886 88999998 99999 899999998765 455655543 133222111
Q ss_pred hhhccCccccccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcc---cccC
Q psy17941 376 FRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNK---GIIG 452 (679)
Q Consensus 376 ~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~---~~~G 452 (679)
.+++.+...-||-+... ...+.+..|+| +. |.- .+..+. |..+..+...... .+.+
T Consensus 246 -----~~~~~~v~t~s~~~s~r-----~~~~~i~i~GD-n~-------G~v--~Pp~vA-~~qV~~~~~~~~ga~~h~~~ 304 (500)
T COG0442 246 -----EGELEYVHTTSYGISTR-----IIGAAILIHGD-NE-------GLV--LPPIVA-DIQVVIVPIFIKGANEHYKV 304 (500)
T ss_pred -----cccceEecccceEEEee-----eeeEEEEEecC-CC-------Ccc--CCchhc-cceEEEEeccccCcchhhhh
Confidence 01222221223322211 13455566666 11 211 111111 2222111111111 1112
Q ss_pred ccccchhhHHHHHhhhcCHhHHHHHHHhh-hcCCcEEEeecCceeeeccceeEEeeeecccceeEe-----ccceeeccc
Q psy17941 453 KEFKKDAKTICDALAALDLNSVSAVEESL-NTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEI-----IPSVIEPSF 526 (679)
Q Consensus 453 ~~~~~~~~~i~d~L~~~~~~~~~~~~~~l-~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~-----~P~vi~~s~ 526 (679)
-++..|+..-..++.. +.+.+.-- +..|. .+.. .+-.++++.+-.+.+|++++..... ..+++|+||
T Consensus 305 ~~~~rd~~~~l~~~~~-----~~~~D~~~~~~~G~-kl~~-~e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~y 377 (500)
T COG0442 305 VNYGRDVAEPLEKLGI-----RVEGDDRSPDGPGF-KLNI-WEGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCY 377 (500)
T ss_pred hhhhhhhhhhhhhcce-----EEeccccCCCCCCc-eeee-eeccccCEEEEECchhhhhCeeEEEecCCCccceEEEeh
Confidence 2222222111111000 00000000 01111 0110 0001222333334778887664433 223678998
Q ss_pred cHH--HHHHHHHHhccccCCCccccccccCCCCCCCceEEEEecCCC-CChHHHHHHHHHHHHHCC-CeEEEeCCCCCHH
Q psy17941 527 GIG--RIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSN-PEFQPFIKMLSSELSQNG-ISFKVDDSGGSIG 602 (679)
Q Consensus 527 GIe--Rll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~-~e~~~~a~~l~~~Lr~~G-i~v~~D~~~~slg 602 (679)
|++ |++.+++|+++|+.+ +.||..+||+++.|++++.. ......+.+++..|...| ..|++|+++.+.|
T Consensus 378 gigvsr~v~a~ieq~~d~~g-------i~w~~a~apf~~~iv~~n~~~~~~~~~~~~~~~~l~~~G~~e~~~ddr~er~g 450 (500)
T COG0442 378 GIGVSRLVAALLEQIHDENG-------IIWPKAIAPFDVHIVPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDDRDERPG 450 (500)
T ss_pred hhhhhhHHHHHHHHhccccc-------CccccccCcceeEEEEcCchhHHHHHHhhhHHHHHHhCCchhhhhhhhccccC
Confidence 876 999999999998888 99998889999999999863 334456678899999999 9999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHH
Q psy17941 603 KRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVI 652 (679)
Q Consensus 603 kq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l 652 (679)
.++++|+.+|+||.+++|++ . +.|.|++|.|.+|+...+++..+...+
T Consensus 451 ~k~~~a~liGiP~~~~~g~~-~-~~g~~e~k~r~~ge~~~~~~~~l~~~~ 498 (500)
T COG0442 451 VKFADADLIGIPLRIVVGKR-L-AEGEVEVKCRKCGEKEAVTIEALFARL 498 (500)
T ss_pred ccccCCeEecccceeeeccc-c-cCCceeEEecCCCchhhccHHHHHHHh
Confidence 99999999999999999998 5 689999999999999888888877654
No 14
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.4e-48 Score=433.17 Aligned_cols=365 Identities=23% Similarity=0.280 Sum_probs=274.8
Q ss_pred HHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhh-hcCCcccccC
Q psy17941 68 AKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLK-ASGHVDRFAD 146 (679)
Q Consensus 68 ~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~-~SGh~~~f~d 146 (679)
+-..+++.+.+++... .++|+|+|+|.|++++++|++++++.| .+.|+++|.+|+|.|.++|. .||||+.|.+
T Consensus 16 ~w~~~~~~~~~l~d~~-----~v~G~~~~~P~g~~i~~~i~~~~~~~~-~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~ 89 (477)
T PRK08661 16 EWYNDVVKKAELADYS-----PVKGCMVIKPYGYAIWENIQKILDKLF-KETGHENVYFPLLIPESLLEKEKEHVEGFAP 89 (477)
T ss_pred HHHHHHHHHccCcccC-----CCCceEEECccHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHhhhcCchhhccc
Confidence 3456789888887432 269999999999999999999999999 99999999999999999996 5999999999
Q ss_pred CceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhh
Q psy17941 147 LMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNL 226 (679)
Q Consensus 147 ~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnl 226 (679)
+||+....+.. +| + -.+++.||+|+.++
T Consensus 90 e~~~v~~~~~~----~~-----~-------------------e~l~LrPtsE~~i~------------------------ 117 (477)
T PRK08661 90 EVAWVTHGGGE----KL-----E-------------------EKLALRPTSETIIY------------------------ 117 (477)
T ss_pred ccEEEEccCCC----cc-----C-------------------ceEEEecCCcHHHH------------------------
Confidence 99996554310 00 0 01344555554444
Q ss_pred hhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcc
Q psy17941 227 MFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 227 mf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~ 306 (679)
..|++.+.. .++||+++||+|+|||+|.+ .+||+|+|||+|.|+|+|+.+.+.
T Consensus 118 -------------------------~~~~~~i~S-yrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~ee 170 (477)
T PRK08661 118 -------------------------PMYKKWIQS-YRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEE 170 (477)
T ss_pred -------------------------HHHHhhhcc-hhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHH
Confidence 444444432 27999999999999999988 559999999999999997655544
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHH-HHcCCCccchhhhhccCcccc
Q psy17941 307 SHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFM-ISVGIDPEKLRFRQHMGNEMA 385 (679)
Q Consensus 307 ~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l-~~~g~~~~~~~~r~~~~~e~~ 385 (679)
+...|..+.+.|. .++ +.+|+|....+ ....++.
T Consensus 171 a~~e~~~~l~~y~------------------------------------------~i~~~~Lglp~~~~~---~~~~ekf 205 (477)
T PRK08661 171 AEEETLEMLEIYK------------------------------------------EFFEDYLAIPVIIGK---KTEWEKF 205 (477)
T ss_pred HHHHHHHHHHHHH------------------------------------------HHHHHhcCCeEEEEe---cChHHhh
Confidence 4444444444433 344 56788755332 1223566
Q ss_pred ccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHH
Q psy17941 386 HYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDA 465 (679)
Q Consensus 386 ~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~ 465 (679)
+++..+||+|.+++.|+..-+|. .++| |..|.
T Consensus 206 ~ga~~~~~ie~~~~dgr~~q~gt----~~~L-----------------------------------g~~~s--------- 237 (477)
T PRK08661 206 AGADYTYTIEAMMPDGKALQAGT----SHYL-----------------------------------GQNFA--------- 237 (477)
T ss_pred CCCcceeEEEEEeCCCCEEEEEE----eccc-----------------------------------ccchh---------
Confidence 77888999999888875333321 1111 11110
Q ss_pred hhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccH-HHHHHHHHHhccccCC
Q psy17941 466 LAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGI-GRIMYALFEHNFKMRD 544 (679)
Q Consensus 466 L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GI-eRll~al~e~~~~~~~ 544 (679)
+.|++. |... ++. .+.+++.|+|+ +|+|++|++++.++.|
T Consensus 238 ----------------------------~~f~i~--------y~d~-~g~--~~~v~~~s~G~~~R~i~alie~~~D~~G 278 (477)
T PRK08661 238 ----------------------------KAFDIK--------FQDK-DGK--LEYVHQTSWGVSTRLIGALIMTHGDDKG 278 (477)
T ss_pred ----------------------------HhcCCE--------EECC-CCC--EeeeEEecccHHHHHHHHHHHHhCccCC
Confidence 112221 2111 112 23456789998 5999999999888877
Q ss_pred CccccccccCCCCCCCceEEEEecCC----CCChHHHHHHHHHHHHHCCCeEEEeC-CCCCHHHHHHHHHHhCCCEEEEE
Q psy17941 545 GDEQRTYLALPPLVAPLKASILPLSS----NPEFQPFIKMLSSELSQNGISFKVDD-SGGSIGKRYARTDEIAIPFGITI 619 (679)
Q Consensus 545 ~~~~r~~l~~P~~laP~~V~Vi~l~~----~~e~~~~a~~l~~~Lr~~Gi~v~~D~-~~~slgkq~k~Ad~~Gip~~IiV 619 (679)
+.||+++||+||+|+|+.. ++++..+|.+|++.||++||+|++|+ ++.++|+||++|+++|+|++|+|
T Consensus 279 -------l~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK~~~ae~~GvP~~IiI 351 (477)
T PRK08661 279 -------LVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGVPLRIEI 351 (477)
T ss_pred -------CccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEE
Confidence 8999999999999999932 24577899999999999999999999 68999999999999999999999
Q ss_pred eCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 620 DFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 620 G~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
|++++ ++|+|+|++|+|++|..++++++++.|.++++
T Consensus 352 G~~el-e~~~V~ik~rdtgek~~v~~~el~~~l~~~l~ 388 (477)
T PRK08661 352 GPRDL-ENNTVVLVRRDTLEKETVPLDELVEKVPELLE 388 (477)
T ss_pred Ccchh-hcCeEEEEECCCCceEEEEHHHHHHHHHHHHH
Confidence 99999 89999999999999999999999988876544
No 15
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=3.7e-48 Score=432.95 Aligned_cols=362 Identities=21% Similarity=0.271 Sum_probs=275.8
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhh-cCCcccccCCc
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKA-SGHVDRFADLM 148 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~-SGh~~~f~d~m 148 (679)
..+++.+.|++... .++|+++|+|.|++++++|++++++.+ .+.|+++|.+|+|.+.++|.+ +|||+.|.++|
T Consensus 12 y~~l~~~~~li~~~-----~~~G~~~~lP~g~~i~~~I~~~i~~~~-~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~ 85 (472)
T TIGR00408 12 YHQILEKAEIIDYY-----PVKGCYVWLPYGFKIWKNIQKILRNIL-DEIGHEEVYFPMLIPESELAKEKDHIKGFEPEV 85 (472)
T ss_pred HHHHHHHcCCcccc-----CCCceEEECcCHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHHhhcchhhhcchhc
Confidence 56799999997542 379999999999999999999999999 999999999999999999987 57999999999
Q ss_pred eeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhh
Q psy17941 149 VKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMF 228 (679)
Q Consensus 149 ~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf 228 (679)
|+....|. ++|= ..+++.||+|..+..+.+..++|
T Consensus 86 f~v~~~g~----~~~~------------------------e~l~LrPt~e~~i~~~~~~~i~S----------------- 120 (472)
T TIGR00408 86 YWITHGGL----SKLD------------------------EPLALRPTSETAMYPMFKKWVKS----------------- 120 (472)
T ss_pred EEEecCCC----CccC------------------------CcEEEeCCCcHHHHHHHhccccC-----------------
Confidence 99655432 0000 01456666666666555544443
Q ss_pred hcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEE-EeCCCcch
Q psy17941 229 ATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEH-FCDPTDKS 307 (679)
Q Consensus 229 ~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~-F~~~~~~~ 307 (679)
| ++||+++||+|++||+|.+|++||+|+|||+|.|+|+ |+++++.
T Consensus 121 ------------~---------------------rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a- 166 (472)
T TIGR00408 121 ------------Y---------------------TDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEA- 166 (472)
T ss_pred ------------h---------------------hhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHH-
Confidence 3 7999999999999999999899999999999999996 5565543
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHH-HcCCCccchhhhhccCccccc
Q psy17941 308 HAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMI-SVGIDPEKLRFRQHMGNEMAH 386 (679)
Q Consensus 308 ~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~-~~g~~~~~~~~r~~~~~e~~~ 386 (679)
...|..+. .....++. .+|++...... ...|...
T Consensus 167 ~~e~~~~l------------------------------------------~~y~~i~~~~lglp~~~~~~---~~~ek~~ 201 (472)
T TIGR00408 167 EEQVLRAL------------------------------------------DIYKEFIENSLAIPYFVGRK---PEWEKFA 201 (472)
T ss_pred HHHHHHHH------------------------------------------HHHHHHHHhccCCeEEEEec---CchhhcC
Confidence 33333333 33344554 68887654331 2235555
Q ss_pred cccCccchhhhccCC-ceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHH
Q psy17941 387 YACDCWDAECLTSYG-WVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDA 465 (679)
Q Consensus 387 ya~~~~d~e~~~~~g-~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~ 465 (679)
++..+||+|.+++.| ++|+..+.+- |..|.
T Consensus 202 ga~~~~~~e~~~~dgr~~q~~t~~~L----------------------------------------g~~~s--------- 232 (472)
T TIGR00408 202 GAEYTWAFETIMPDGRTLQIATSHNL----------------------------------------GQNFA--------- 232 (472)
T ss_pred CccceEEEeEEEcCCCEEEEeeeecc----------------------------------------ccccc---------
Confidence 777889999888776 3344332211 11110
Q ss_pred hhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccH-HHHHHHHHHhccccCC
Q psy17941 466 LAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGI-GRIMYALFEHNFKMRD 544 (679)
Q Consensus 466 L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GI-eRll~al~e~~~~~~~ 544 (679)
+.|++. |... ++....|+ ++|+|| +|+|++|++++.++.|
T Consensus 233 ----------------------------k~f~i~--------y~~~-~g~~~~~h--~~s~Gi~eRli~~lie~~~d~~g 273 (472)
T TIGR00408 233 ----------------------------KTFEIK--------FETP-TGDKEYAY--QTSYGISTRVIGALIAIHSDEKG 273 (472)
T ss_pred ----------------------------HhcCCE--------EECC-CCCEEeeE--EccccHHHHHHHHHHHHhCCCCc
Confidence 112221 2211 12233333 589999 7999999998877777
Q ss_pred CccccccccCCCCCCCceEEEEec--CCC--CChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEe
Q psy17941 545 GDEQRTYLALPPLVAPLKASILPL--SSN--PEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITID 620 (679)
Q Consensus 545 ~~~~r~~l~~P~~laP~~V~Vi~l--~~~--~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG 620 (679)
+.||+++||+||+|+|+ +++ ++...+|.+|++.||++|++|++|+++.++|+||++|+++|+||+|+||
T Consensus 274 -------l~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~~s~gkk~k~Ae~~GvP~~IiIG 346 (472)
T TIGR00408 274 -------LVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPGRKFYQWEIKGIPLRIEVG 346 (472)
T ss_pred -------eeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEC
Confidence 89999999999999997 321 3578999999999999999999999888999999999999999999999
Q ss_pred CCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 621 FDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 621 ~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
++|+ ++|+|+||+|++++|..++++++++.|.+++.
T Consensus 347 ~~El-e~~~V~ik~rdt~eq~~v~l~el~~~l~~~l~ 382 (472)
T TIGR00408 347 PNDI-EKNIAVISRRDTGEKYQVSLDQLEERVVELLN 382 (472)
T ss_pred cchh-hCCeEEEEECCCCceEEEEHHHHHHHHHHHHH
Confidence 9999 89999999999999999999999988866554
No 16
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=1e-47 Score=441.93 Aligned_cols=389 Identities=19% Similarity=0.283 Sum_probs=294.3
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCce
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMV 149 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~ 149 (679)
+..+.++.+++..+.. .++|+|.|+|.|++|+++|++++++.. .+.||++|.||+|.+.++|+.||||++|.|+||
T Consensus 219 H~~lg~~l~lf~~~~~---~g~G~~~~~p~G~~l~~~L~~~~~~~~-~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf 294 (614)
T PLN02837 219 HRRLGQDLDLFSIQDD---AGGGLVFWHPKGAIVRHIIEDSWKKMH-FEHGYDLLYTPHVAKADLWKTSGHLDFYKENMY 294 (614)
T ss_pred HHHHHHHcCCcccCcC---cCCcceEEechHHHHHHHHHHHHHHHH-HHCCCEEEECCccCCHHHHhhcCCcccchhhcc
Confidence 3456666565532211 378999999999999999999999988 788999999999999999999999999999999
Q ss_pred eeCC-CCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhh
Q psy17941 150 KDLK-TGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMF 228 (679)
Q Consensus 150 ~d~~-~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf 228 (679)
+... .++ .|++.||.+..+..+.+..++|
T Consensus 295 ~~~~~~~~---------------------------------~y~l~p~~~p~~~~~~~~~~~S----------------- 324 (614)
T PLN02837 295 DQMDIEDE---------------------------------LYQLRPMNCPYHILVYKRKLHS----------------- 324 (614)
T ss_pred cccCCCCc---------------------------------eEEECCCCcHHHHHHHhCccCC-----------------
Confidence 8432 112 1578888888877777766654
Q ss_pred hcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCC-CCCcccccceeEeeEEEEeCCCcch
Q psy17941 229 ATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP-RSGLIRVREFTMAEIEHFCDPTDKS 307 (679)
Q Consensus 229 ~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p-r~Gl~R~REF~q~e~~~F~~~~~~~ 307 (679)
| ++||++++|+|+|||+|+++ .+||+|+|||+|.|+|+||.|++..
T Consensus 325 ------------y---------------------rdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~ 371 (614)
T PLN02837 325 ------------Y---------------------RDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIK 371 (614)
T ss_pred ------------h---------------------hHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHH
Confidence 5 89999999999999999975 7999999999999999999998753
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCcccccc
Q psy17941 308 HAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHY 387 (679)
Q Consensus 308 ~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~y 387 (679)
..|.. ++.....++..+|+++..+....+. +-...
T Consensus 372 -~e~~~------------------------------------------~l~~~~~~~~~lg~~~~~~~~~t~~--~~~~g 406 (614)
T PLN02837 372 -DEIRG------------------------------------------VLDLTEEILKQFGFSKYEINLSTRP--EKSVG 406 (614)
T ss_pred -HHHHH------------------------------------------HHHHHHHHHHHcCCCeEEEEecCCc--hhccC
Confidence 22222 3444556677899987655433221 10111
Q ss_pred ccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhh
Q psy17941 388 ACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALA 467 (679)
Q Consensus 388 a~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~ 467 (679)
+...|+. ..-+|....+.+|.++.. ...+.+++||++.. .+.|.|+
T Consensus 407 ~~~~w~~-----------------~~~~l~~~l~~~~~~~~~--------------~~g~~afygpkid~---~~~d~~g 452 (614)
T PLN02837 407 SDDIWEK-----------------ATTALRDALDDKGWEYKV--------------DEGGGAFYGPKIDL---KIEDALG 452 (614)
T ss_pred CHHHHHH-----------------HHHHHHHHHHHcCCCcee--------------CCCcccccCcceee---EeeccCC
Confidence 1122321 111343333444444321 23678899998753 2345544
Q ss_pred hcCHhHHHHHHHhhhcCCcEEEeec-CceeeeccceeEEeeeecccceeEeccceeecc-c-cHHHHHHHHHHhccccCC
Q psy17941 468 ALDLNSVSAVEESLNTNGKYELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPS-F-GIGRIMYALFEHNFKMRD 544 (679)
Q Consensus 468 ~~~~~~~~~~~~~l~~~g~~~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s-~-GIeRll~al~e~~~~~~~ 544 (679)
+.- ++++++++.+ +.+|+++ |... ++....|.||+.+ + |++|++++|++++.
T Consensus 453 r~~------------q~~tiqldf~~~~~f~l~--------y~~~-d~~~~~pv~ih~~~~G~~eRlia~Lie~~~---- 507 (614)
T PLN02837 453 RKW------------QCSTIQVDFNLPERFDIT--------YVDS-NSEKKRPIMIHRAILGSLERFFGVLIEHYA---- 507 (614)
T ss_pred cee------------eecceeEeecchhhcCcE--------EECC-CCCccCCEEEEcCCccCHHHHHHHHHHHcC----
Confidence 322 3556666554 7777765 5543 3455688888766 4 59999999999753
Q ss_pred CccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCC
Q psy17941 545 GDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTL 624 (679)
Q Consensus 545 ~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El 624 (679)
..||+|+||+||+|+|++++ ..++|.+|++.||++|++|+++ .+.++|+|+++|++.|+||+||||++|+
T Consensus 508 -------g~~P~~laP~qV~IIpi~~~--~~~~A~~Ia~~Lr~~GirVev~-~~~slgkkir~A~~~gip~~IiIG~~E~ 577 (614)
T PLN02837 508 -------GDFPLWLAPVQARVLPVTDN--ELEYCKEVVAKLKAKGIRAEVC-HGERLPKLIRNAETQKIPLMAVVGPKEV 577 (614)
T ss_pred -------CCCCCCCCCccEEEEEeChH--HHHHHHHHHHHHHHCCCEEEEe-CCCCHHHHHHHHHHcCCCEEEEEcchhh
Confidence 35999999999999999753 6789999999999999999995 5789999999999999999999999999
Q ss_pred CCCCeEEEEECCCCceEEEehHHHHHHHHHHHhccc
Q psy17941 625 KEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKI 660 (679)
Q Consensus 625 ~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~~ 660 (679)
++|+|+||+|++++|..++++++++.|.+.++.++
T Consensus 578 -e~~~VtVr~r~~geq~~v~~~el~~~l~~~~~~~~ 612 (614)
T PLN02837 578 -ETRTLTVRSRHGGELGTMPVDDFINRIQLAVENRT 612 (614)
T ss_pred -hcCEEEEEECCCCceeEeeHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999999988887654
No 17
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=5.6e-47 Score=434.58 Aligned_cols=385 Identities=21% Similarity=0.267 Sum_probs=274.3
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCce
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMV 149 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~ 149 (679)
+..++++.+++..... .++|+++|+|.|++++++|++++++.+ .++||.+|.||+|.+.++|++||||+.|.++||
T Consensus 172 H~~l~~~~~l~~~~~~---~~~G~~~~~p~g~~~~~~i~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy 247 (563)
T TIGR00418 172 HRKLGKELELFSFEPE---IGPGLPFWLPKGATIRNLLEDFVRQKQ-IKYGYMEVETPIMYDLELWEISGHWDNYKERMF 247 (563)
T ss_pred HHHHHHhCCCcccCcc---cCCcceEEeccHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHHhcCCcccchhhcc
Confidence 4568888888753311 379999999999999999999999999 999999999999999999999999999999998
Q ss_pred eeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhh
Q psy17941 150 KDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFA 229 (679)
Q Consensus 150 ~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~ 229 (679)
+....
T Consensus 248 ~~~d~--------------------------------------------------------------------------- 252 (563)
T TIGR00418 248 PFTEL--------------------------------------------------------------------------- 252 (563)
T ss_pred eeccC---------------------------------------------------------------------------
Confidence 74321
Q ss_pred cccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCC-CCCcccccceeEeeEEEEeCCCcchh
Q psy17941 230 TQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP-RSGLIRVREFTMAEIEHFCDPTDKSH 308 (679)
Q Consensus 230 ~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p-r~Gl~R~REF~q~e~~~F~~~~~~~~ 308 (679)
+++..+||||+|+++++.|++.... .++||+++||+|+|||+|++| ++||+|+|||+|.|+|+||.+++ +.
T Consensus 253 ------~~~~~~LrP~~~~~i~~~~~~~~~s-~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~-~~ 324 (563)
T TIGR00418 253 ------DNREFMLKPMNCPGHFLIFKSSLRS-YRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQ-IK 324 (563)
T ss_pred ------CCceEEEecCCCHHHHHHHhCcCCC-hHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHH-HH
Confidence 1234589999999999999876532 257999999999999999998 69999999999999999999543 33
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCceEEeeccc-ccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCcccccc
Q psy17941 309 AKFSDVETTQMMVLYSACNQMDGKPAERITIGEA-VRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHY 387 (679)
Q Consensus 309 ~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a-~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~y 387 (679)
..|..+.+... .+|..+| -+...+.++.. .++.+-....+....+.+...|..+|+++..-.
T Consensus 325 ~e~~~~i~~~~-~~~~~lg----l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~------------ 387 (563)
T TIGR00418 325 EEFKNQFRLIQ-KVYSDFG----FSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDP------------ 387 (563)
T ss_pred HHHHHHHHHHH-HHHHHcC----CCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcC------------
Confidence 44454555444 4544432 11111111100 001110000011112233334444444332110
Q ss_pred ccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhh
Q psy17941 388 ACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALA 467 (679)
Q Consensus 388 a~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~ 467 (679)
..+.++|+++... +.|.|+
T Consensus 388 ----------------------------------------------------------~~g~~y~~~~~f~---~~~~lg 406 (563)
T TIGR00418 388 ----------------------------------------------------------GRGAFYGPKIDFA---FKDALG 406 (563)
T ss_pred ----------------------------------------------------------CCcceecceEEEE---eecCCC
Confidence 0112233322110 112221
Q ss_pred hcCHhHHHHHHHhhhcCCcEEEeec-CceeeeccceeEEeeeecccceeEecccee--eccccHHHHHHHHHHhccccCC
Q psy17941 468 ALDLNSVSAVEESLNTNGKYELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVI--EPSFGIGRIMYALFEHNFKMRD 544 (679)
Q Consensus 468 ~~~~~~~~~~~~~l~~~g~~~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi--~~s~GIeRll~al~e~~~~~~~ 544 (679)
+.. ++++.++++. |++|++. |.... |+..+|.|+ ++++|+||++++|+++..
T Consensus 407 ~~~------------~~~t~q~~~~~g~ryd~~--------~~~~~-g~~~~p~ii~~Gfa~gieRli~~l~e~~~---- 461 (563)
T TIGR00418 407 REW------------QCATVQLDFELPERFDLT--------YVDED-NEEKRPVMIHRAILGSIERFIAILLEKYA---- 461 (563)
T ss_pred Cce------------eeceeeeccCCHhhcCCE--------EECCC-CCEEeeEEEEeeccCcHHHHHHHHHHhcc----
Confidence 100 1234444444 6777664 43332 445578874 455699999998877632
Q ss_pred CccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCC
Q psy17941 545 GDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTL 624 (679)
Q Consensus 545 ~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El 624 (679)
..||++++|.+|+|+|++++ ...+|.+|++.||++|++|++|+++.++++|+++|++.|+||+||||++|+
T Consensus 462 -------~~~p~~~~p~~v~vi~~~~~--~~~~a~~ia~~LR~~Gi~v~~d~~~~sl~~q~k~A~~~g~~~~iiiG~~E~ 532 (563)
T TIGR00418 462 -------GNFPLWLAPVQVVVIPVNER--HLDYAKKVAQKLKKAGIRVDVDDRNERLGKKIREAQKQKIPYMLVVGDKEM 532 (563)
T ss_pred -------CCCCCcCCCceEEEEEccch--HHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEchhhh
Confidence 46888899999999999753 788999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEECCCCceEEEehHHHHHHHHH
Q psy17941 625 KEPHSVTLRERDSMTQVRVKVNEVASVIKD 654 (679)
Q Consensus 625 ~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~ 654 (679)
++|+|+||+|+|++|..++++++++.+++
T Consensus 533 -~~~~v~vk~~~~g~q~~v~~~el~~~i~~ 561 (563)
T TIGR00418 533 -ESLAVNVRTRKGQKLEKMSLDEFLEKLRK 561 (563)
T ss_pred -hCCeEEEEECCCCccceeeHHHHHHHHHh
Confidence 89999999999999999999999887754
No 18
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-47 Score=439.71 Aligned_cols=391 Identities=22% Similarity=0.310 Sum_probs=287.0
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCce
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMV 149 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~ 149 (679)
+..+++..+++.-+.. .++|+++|+|.|++++++|+++|++.+ .++||++|.||+|++.++|++||||+.|.++||
T Consensus 178 h~~l~~~~~l~~~~~~---~~~G~~~~~p~~~~~~~~l~~~~~~~~-~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my 253 (575)
T PRK12305 178 HRKLGKELDLFSFPDE---IGPGLPVWHPKGAIIRREIEDYLRKEH-LKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMF 253 (575)
T ss_pred HHHHHHhcCccccccc---cCCcceEEeccHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHhhcCCcccchhhcc
Confidence 3447777676642211 279999999999999999999999999 999999999999999999999999999999988
Q ss_pred eeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhh
Q psy17941 150 KDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFA 229 (679)
Q Consensus 150 ~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~ 229 (679)
+....
T Consensus 254 ~~~d~--------------------------------------------------------------------------- 258 (575)
T PRK12305 254 PPMEI--------------------------------------------------------------------------- 258 (575)
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 63211
Q ss_pred cccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCC-CCCCcccccceeEeeEEEEeCCCcchh
Q psy17941 230 TQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEIS-PRSGLIRVREFTMAEIEHFCDPTDKSH 308 (679)
Q Consensus 230 ~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~-pr~Gl~R~REF~q~e~~~F~~~~~~~~ 308 (679)
+++..+|||+|++++++.|+.... ..++||+++||+|+|||+|.+ +++||+|+|||+|+|+|+||.+++...
T Consensus 259 ------~~~~~~LRP~~~~~~~~~~~~~~~-s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~ 331 (575)
T PRK12305 259 ------DEEEYYLKPMNCPGHILIYKSRLR-SYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIED 331 (575)
T ss_pred ------CCceEEEecCCCHHHHHHHhcccC-ChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHH
Confidence 123459999999999999987643 235799999999999999976 479999999999999999998776531
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccc
Q psy17941 309 AKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYA 388 (679)
Q Consensus 309 ~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya 388 (679)
.+. ..++.+..++..+|++...+.+... .+..|.
T Consensus 332 -e~~------------------------------------------e~i~l~~~~~~~lgl~~~~i~l~~r---~~~~~~ 365 (575)
T PRK12305 332 -EIL------------------------------------------KVLDFVLELLKDFGFKDYYLELSTR---EPEKYV 365 (575)
T ss_pred -HHH------------------------------------------HHHHHHHHHHHHcCCCeEEEEEeCC---Chhhcc
Confidence 111 1244456677788887443332211 000110
Q ss_pred cCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhh
Q psy17941 389 CDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAA 468 (679)
Q Consensus 389 ~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~ 468 (679)
-+.+.|... .-.+......+|.++.. ...+..|+||+|.. .+.|.+++
T Consensus 366 ---g~~~~~~~~------------~~~l~~~l~~~g~~~~~--------------~~~~~~~y~~~~~~---~~~d~~g~ 413 (575)
T PRK12305 366 ---GDDEVWEKA------------TEALREALEELGLEYVE--------------DPGGAAFYGPKIDV---QIKDALGR 413 (575)
T ss_pred ---CCHHHHHHH------------HHHHHHHHHhcCCCcEe--------------cCCCcccccccEEE---EeeccCCC
Confidence 011221110 00122222333443321 12355678887642 23444433
Q ss_pred cCHhHHHHHHHhhhcCCcEEEeec-CceeeeccceeEEeeeecccceeEeccceeecc-c-cHHHHHHHHHHhccccCCC
Q psy17941 469 LDLNSVSAVEESLNTNGKYELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPS-F-GIGRIMYALFEHNFKMRDG 545 (679)
Q Consensus 469 ~~~~~~~~~~~~l~~~g~~~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s-~-GIeRll~al~e~~~~~~~~ 545 (679)
.. ++++++++.+ +++|+++ |+.. .++...|.||+.+ + |+||++++|.++..
T Consensus 414 ~~------------~~~t~~~~~~~~~~fdl~--------y~~~-~~~~~~p~~ih~~~~G~~eRl~~~l~e~~~----- 467 (575)
T PRK12305 414 EW------------QMSTIQLDFNLPERFDLE--------YTAE-DGKRQRPVMIHRALFGSIERFIGILTEHYA----- 467 (575)
T ss_pred ce------------eccceeeecccHhhCCCE--------EECC-CCCccCceEEEccccccHHHHHHHHHHHhC-----
Confidence 21 2445554443 4566665 5553 3445578887665 3 49999999888632
Q ss_pred ccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCC
Q psy17941 546 DEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLK 625 (679)
Q Consensus 546 ~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~ 625 (679)
..||+|++|.+|+|+|++++ ...+|.+|++.||++||+|++|+++.++|+||++|++.|+||+||||++|+
T Consensus 468 ------~~~p~~~~p~~v~Ii~~~~~--~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kk~~~A~~~g~p~~iivG~~E~- 538 (575)
T PRK12305 468 ------GAFPFWLAPVQVVIIPVADA--HNEYAEEVAKKLRAAGIRVEVDTSNERLNKKIRNAQKQKIPYMLVVGDKEV- 538 (575)
T ss_pred ------CCCCCCCCCccEEEEEeChH--HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEechhh-
Confidence 47999999999999999753 788999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEehHHHHHHHHHHHhcc
Q psy17941 626 EPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659 (679)
Q Consensus 626 ~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~ 659 (679)
++|+|+||+|++++|..++++++++.|.++++++
T Consensus 539 ~~~~v~vr~~~~~~q~~v~~~~l~~~l~~~~~~~ 572 (575)
T PRK12305 539 EAGTVSVRTRDGEQLNGMPLDEFIELIKEKIAER 572 (575)
T ss_pred hCCEEEEEEcCCCceeeeeHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999998887754
No 19
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=1.7e-47 Score=445.48 Aligned_cols=371 Identities=20% Similarity=0.262 Sum_probs=280.7
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLE 169 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~ 169 (679)
++|+++|+|.|++++++|+++|++.+ .++||+||.||+|.+.++|++||||++|.++||+...++
T Consensus 310 ~~G~~~~lP~g~~i~~~l~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~-------------- 374 (686)
T PLN02908 310 SPGSCFFLPHGARIYNKLMDFIREQY-WERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEK-------------- 374 (686)
T ss_pred CCcceEEechHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHHhhcCCccccchhccEEecCC--------------
Confidence 69999999999999999999999999 899999999999999999999999999999998742221
Q ss_pred HhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhh
Q psy17941 170 KLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQG 249 (679)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqg 249 (679)
...+|||+++++
T Consensus 375 --------------------------------------------------------------------~~~~Lrp~~~~~ 386 (686)
T PLN02908 375 --------------------------------------------------------------------QEFGLKPMNCPG 386 (686)
T ss_pred --------------------------------------------------------------------eeEEEcCCCcHH
Confidence 234889999999
Q ss_pred HHHHHHHhhhhccCCCCeeeecccccccCCCCC-CCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhc
Q psy17941 250 IFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP-RSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQ 328 (679)
Q Consensus 250 i~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p-r~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~ 328 (679)
+++.|++... +.++||+++||+|+|||||++| ..||+|+|||+|+|+|+||.|++... ++
T Consensus 387 ~~~~~~~~~~-s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~-------e~----------- 447 (686)
T PLN02908 387 HCLMFAHRVR-SYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKD-------EV----------- 447 (686)
T ss_pred HHHHHhcccc-ChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHH-------HH-----------
Confidence 9888876544 3469999999999999999988 59999999999999999999976531 11
Q ss_pred cCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccCCceeeeec
Q psy17941 329 MDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGC 408 (679)
Q Consensus 329 ~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~~~ 408 (679)
...++.+..++..+|+++. ++++... +........|+
T Consensus 448 -------------------------~~~l~~~~~v~~~lG~~~~-~~ls~r~--~~~~g~~~~w~--------------- 484 (686)
T PLN02908 448 -------------------------KGVLDFLDYVYEVFGFTYE-LKLSTRP--EKYLGDLETWD--------------- 484 (686)
T ss_pred -------------------------HHHHHHHHHHHHHCCCcEE-EEEeCCc--cccCCCHHHHH---------------
Confidence 1134455667788999754 2222111 10011112222
Q ss_pred cccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhcCHhHHHHHHHhhhcCCcEE
Q psy17941 409 ADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKYE 488 (679)
Q Consensus 409 ~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~~~~~~~~~~l~~~g~~~ 488 (679)
.+.-+|.......|.++. + ..++.+++||++.. .+.|+|.+.. ++++++
T Consensus 485 --~ae~~l~~~ld~~~~~~~----------~----~~g~~afygpkid~---~~~d~l~r~~------------~~~t~q 533 (686)
T PLN02908 485 --KAEAALTEALNAFGKPWQ----------L----NEGDGAFYGPKIDI---TVSDALKRKF------------QCATVQ 533 (686)
T ss_pred --HHHHHHHHHHHHcCCCcE----------E----CCCceeecccceEE---EEEeccCCEe------------ecccee
Confidence 111122222222333221 1 13677899997642 3456765543 355555
Q ss_pred Eeec-CceeeeccceeEEeeeecccceeEeccceeeccc--cHHHHHHHHHHhccccCCCccccccccCCCCCCCceEEE
Q psy17941 489 LLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSF--GIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASI 565 (679)
Q Consensus 489 ~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~--GIeRll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~V 565 (679)
++.+ +.+|+ ++||++... ....|.+++.++ |+||++++|.++.. +.||.|++|.+|+|
T Consensus 534 ~df~lp~~f~-------L~Y~~e~~~-~~~~pv~ihrai~GsiERli~iL~e~~~-----------g~~p~wlsp~qv~V 594 (686)
T PLN02908 534 LDFQLPIRFK-------LSYSAEDEA-KIERPVMIHRAILGSVERMFAILLEHYA-----------GKWPFWLSPRQAIV 594 (686)
T ss_pred ecccCHhhcC-------CEEECCCCC-cCCCCEEEEeCceEhHHHHHHHHHHHcC-----------CCCCCCCCCceEEE
Confidence 5443 34444 457774321 123677776664 79999999888742 47999999999999
Q ss_pred EecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCceEEEeh
Q psy17941 566 LPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKV 645 (679)
Q Consensus 566 i~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i 645 (679)
+|++++ ..++|.+|++.||++|++|++|.++.++++|+++|++.|+||+||||++|+ ++|+|+||+|++++|..+++
T Consensus 595 ipv~~~--~~~~A~~va~~LR~~Gi~vevd~~~~~l~kkir~A~~~g~~~viivG~~E~-~~~~V~vr~~~~~~q~~i~l 671 (686)
T PLN02908 595 VPISEK--SQDYAEEVRAQLHAAGFYVDVDVTDRKIQKKVREAQLAQYNYILVVGEAEA-ATGTVNVRTRDNVVHGEKKI 671 (686)
T ss_pred EEECHH--HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECchHH-hCCEEEEEECCCCceeeeeH
Confidence 999754 788999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q psy17941 646 NEVASVIKDLSLA 658 (679)
Q Consensus 646 ~el~~~l~~l~~~ 658 (679)
+++++.+.++...
T Consensus 672 ~el~~~l~~~~~~ 684 (686)
T PLN02908 672 EELLTEFKEERAE 684 (686)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998877653
No 20
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-46 Score=437.43 Aligned_cols=387 Identities=20% Similarity=0.275 Sum_probs=278.6
Q ss_pred HHHHHHHhccc-cchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCc
Q psy17941 70 MEDLLKRRFFY-DQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLM 148 (679)
Q Consensus 70 ~~~l~~r~~f~-~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m 148 (679)
+..+.+..+++ ++. .++|+++|+|.|..+|+.|++++++.+ .++||++|.||+|.+.++|++||||++|.++|
T Consensus 247 H~~l~~~~~l~~~~~-----~~~G~~~~~p~g~~~~~~i~~~~~~~~-~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~em 320 (639)
T PRK12444 247 HRKLGKELELFMFSE-----EAPGMPFYLPKGQIIRNELEAFLREIQ-KEYNYQEVRTPFMMNQELWERSGHWDHYKDNM 320 (639)
T ss_pred HHHHHHHcCCccccc-----ccCcceEEeeCHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHhhcCChhhhhhhc
Confidence 34467765543 332 279999999999999999999999999 89999999999999999999999999999988
Q ss_pred eeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhh
Q psy17941 149 VKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMF 228 (679)
Q Consensus 149 ~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf 228 (679)
|....
T Consensus 321 y~~d~--------------------------------------------------------------------------- 325 (639)
T PRK12444 321 YFSEV--------------------------------------------------------------------------- 325 (639)
T ss_pred CeecC---------------------------------------------------------------------------
Confidence 74211
Q ss_pred hcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCC-CCCcccccceeEeeEEEEeCCCcch
Q psy17941 229 ATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP-RSGLIRVREFTMAEIEHFCDPTDKS 307 (679)
Q Consensus 229 ~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p-r~Gl~R~REF~q~e~~~F~~~~~~~ 307 (679)
|++..+|||++++++++.|++.+. +.++||+++||+|+|||+|.++ ++||+|+|||+|.|+|+||.+++.
T Consensus 326 -------~~~~~~LrP~~~~~~~~~~~~~~~-sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~- 396 (639)
T PRK12444 326 -------DNKSFALKPMNCPGHMLMFKNKLH-SYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQI- 396 (639)
T ss_pred -------CCcEEEEccCCCHHHHHHHhCccc-ChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHH-
Confidence 112347999999999999976543 4478999999999999999776 789999999999999999999773
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCcccccc
Q psy17941 308 HAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHY 387 (679)
Q Consensus 308 ~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~y 387 (679)
...+..+.+.+. .+|..+| - ...+.++...++.+-+.+....|......+|..+|+++.
T Consensus 397 ~~e~~~~~~~~~-~i~~~lg----l-~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~--------------- 455 (639)
T PRK12444 397 EDEIKSVMAQID-YVYKTFG----F-EYEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYR--------------- 455 (639)
T ss_pred HHHHHHHHHHHH-HHHHHcC----C-cEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCce---------------
Confidence 344444444443 4444331 1 111222222222222222233333444444444444332
Q ss_pred ccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhh
Q psy17941 388 ACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALA 467 (679)
Q Consensus 388 a~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~ 467 (679)
. +| ..+.++||+|... +.|.+.
T Consensus 456 -----------------------------------------~-----~~---------~~ga~Y~~~~e~~---~~~~~~ 477 (639)
T PRK12444 456 -----------------------------------------L-----NE---------GDGAFYGPKIDFH---IKDALN 477 (639)
T ss_pred -----------------------------------------e-----cc---------CCcccccceEEEE---eecCCC
Confidence 1 00 1223445544321 111111
Q ss_pred hcCHhHHHHHHHhhhcCCcEEEeec-CceeeeccceeEEeeeecccceeEeccceeecc-c-cHHHHHHHHHHhccccCC
Q psy17941 468 ALDLNSVSAVEESLNTNGKYELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPS-F-GIGRIMYALFEHNFKMRD 544 (679)
Q Consensus 468 ~~~~~~~~~~~~~l~~~g~~~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s-~-GIeRll~al~e~~~~~~~ 544 (679)
.. + .+|+.+++.. +.+|+++ |.+.. |+..+|.|++.+ + |+||++++|+++..
T Consensus 478 ~~----------~--~~~t~~~d~~~~~~f~l~--------~~~~~-g~~~~P~i~~~~~~g~ieRli~~L~e~~~---- 532 (639)
T PRK12444 478 RS----------H--QCGTIQLDFQMPEKFDLN--------YIDEK-NEKRRPVVIHRAVLGSLDRFLAILIEHFG---- 532 (639)
T ss_pred Ch----------h--cccceeeecccccccceE--------EECCC-CCccccEEEEECCCCCHHHHHHHHHHhcC----
Confidence 00 1 2333333332 4555554 44433 445589888766 4 69999999988742
Q ss_pred CccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCC
Q psy17941 545 GDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTL 624 (679)
Q Consensus 545 ~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El 624 (679)
+.||+|++|.+|+|+|++++ +...+|.+|++.||++|++|++|.++.++++|+++|++.|+||+||||++|+
T Consensus 533 -------~~~p~~~ap~qV~Ii~~~~~-~~~~~a~~la~~LR~~Gi~veid~~~~sl~kq~k~A~k~g~~~~iiiG~~E~ 604 (639)
T PRK12444 533 -------GAFPAWLAPVQVKVIPVSNA-VHVQYADEVADKLAQAGIRVERDERDEKLGYKIREAQMQKIPYVLVIGDKEM 604 (639)
T ss_pred -------CCCCCccCCceEEEEEcccH-HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhh
Confidence 57999999999999999751 3778999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEECCCCceEEEehHHHHHHHHHHHhcc
Q psy17941 625 KEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659 (679)
Q Consensus 625 ~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~ 659 (679)
++|+|+||+|++++|..++++++.+.|.+.++++
T Consensus 605 -~~~~v~vr~~~t~~q~~i~l~el~~~l~~~~~~~ 638 (639)
T PRK12444 605 -ENGAVNVRKYGEEKSEVIELDMFVESIKEEIKNR 638 (639)
T ss_pred -hcCeEEEEECCCCceeeeeHHHHHHHHHHHhhcC
Confidence 8999999999999999999999999998777653
No 21
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=100.00 E-value=2.6e-48 Score=402.45 Aligned_cols=250 Identities=53% Similarity=0.801 Sum_probs=225.8
Q ss_pred HHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhh--CceEeecCcccchhhhhhc-CCcccccCC
Q psy17941 71 EDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEE--QMLEVDCSILTLEPVLKAS-GHVDRFADL 147 (679)
Q Consensus 71 ~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~--g~~ev~~P~l~~~~v~~~S-Gh~~~f~d~ 147 (679)
.++|+|+||++||+||||+++|++||+|.|++++++|+++||++| .+. |+++|+||+|++.++|+.. |+++.
T Consensus 2 ~~l~~~~g~~~~~~eiy~~~~G~~d~~P~g~~l~~~i~~~~~~~~-~~~g~~~~~i~tP~i~~~~mf~~~~g~~d~---- 76 (254)
T cd00774 2 VELAKRRGFVFPSSEIYGGVAGFYDYGPLGVELKNNIKSAWRKSF-VLEEEDMLEIDSPIITPELMFKTSIGPVES---- 76 (254)
T ss_pred HhHHhhcCCcccChhhccChhcccccCchHHHHHHHHHHHHHHHH-HhcCCCeEEEeccccCCHHHheeeecccCC----
Confidence 469999999999999999999999999999999999999999999 667 4999999999999777643 54421
Q ss_pred ceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhh
Q psy17941 148 MVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLM 227 (679)
Q Consensus 148 m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlm 227 (679)
T Consensus 77 -------------------------------------------------------------------------------- 76 (254)
T cd00774 77 -------------------------------------------------------------------------------- 76 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcch
Q psy17941 228 FATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKS 307 (679)
Q Consensus 228 f~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~ 307 (679)
++...|||||||||+|++|+|.+..+.++||+++||||+|||||++|++||+|+|||+|+|+|+||+|++.
T Consensus 77 --------~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~- 147 (254)
T cd00774 77 --------GGNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKS- 147 (254)
T ss_pred --------CCcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCc-
Confidence 11235999999999999999999888789999999999999999999999999999999999999999865
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCcccccc
Q psy17941 308 HAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHY 387 (679)
Q Consensus 308 ~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~y 387 (679)
.+.|+.+.+++. .+|.++++ ......+...++.+..++++++++||+.....|+..+|++++.+++++|..+++|||
T Consensus 148 ~e~~~~v~~~~~-~~l~~~G~--~~~~~r~~~~~~~e~a~ya~~~~d~~~~~~~~w~e~~Gi~~~~~~~l~~~~~e~a~y 224 (254)
T cd00774 148 HPWFDYWADQRL-KWLPKFAQ--SPENLRLTDHEKEELAHYANETLDYFYAFPHGFLELEGIANRGDRFLQHHPNESAHY 224 (254)
T ss_pred hHHHHHHHHHHH-HHHHHcCC--CccceEEEecccHhhhhhhHHHHHHHHHHhhhHHHHcCCCcchhHHHhCChhhhhch
Confidence 689999999998 99998765 112337789999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhccCCceeeeeccccchhhHh
Q psy17941 388 ACDCWDAECLTSYGWVECVGCADRSAYDLT 417 (679)
Q Consensus 388 a~~~~d~e~~~~~g~~e~~~~~~r~~~dl~ 417 (679)
+..|||+|...+.||+|++|++||++|||.
T Consensus 225 ~~~~~d~~~~~~~~~~E~~g~~dR~~~dLl 254 (254)
T cd00774 225 ASDCWDAEKLYVPGWIEVSGGADRTDYDLL 254 (254)
T ss_pred HHhccCcceeeCCceEEEeeeechHHhhcC
Confidence 999999999889999999999999999973
No 22
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-44 Score=420.59 Aligned_cols=373 Identities=20% Similarity=0.292 Sum_probs=272.1
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLE 169 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~ 169 (679)
++|++||+|.|+.++++|++++++.+ .++||.||.||+|++.++|+.||||+.|.++||+....
T Consensus 259 ~~G~~~~lp~~~~~~~~i~~~~~~~~-~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~--------------- 322 (638)
T PRK00413 259 APGLPFWHPKGWTIRRELERYIRRKL-RKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTES--------------- 322 (638)
T ss_pred CCcceEEcccHHHHHHHHHHHHHHHH-HHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecC---------------
Confidence 69999999999999999999999999 99999999999999999999999999999999874221
Q ss_pred HhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhh
Q psy17941 170 KLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQG 249 (679)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqg 249 (679)
+++...|||++|++
T Consensus 323 ------------------------------------------------------------------~~~~~~LRP~~~~~ 336 (638)
T PRK00413 323 ------------------------------------------------------------------DGEEYALKPMNCPG 336 (638)
T ss_pred ------------------------------------------------------------------CCcEEEEecCCcHH
Confidence 12345899999999
Q ss_pred HHHHHHHhhhhccCCCCeeeecccccccCCCCC-CCCcccccceeEeeEEEEeCCCcchhhhHHHHHH-HHHHHHHHHhh
Q psy17941 250 IFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP-RSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVET-TQMMVLYSACN 327 (679)
Q Consensus 250 i~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p-r~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d-~~~~~lf~~~~ 327 (679)
+.+.|+.... +.++||+++||+|+|||+|.++ ..||.|+|||+|+|+|+||.+++... + ++
T Consensus 337 ~~r~~~~~~~-s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~-------e~~e--------- 399 (638)
T PRK00413 337 HVQIYKQGLR-SYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEE-------EVKK--------- 399 (638)
T ss_pred HHHHHhCcCC-ChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHH-------HHHH---------
Confidence 9999986543 2357999999999999999553 48999999999999999998765421 1 12
Q ss_pred ccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccCCceeeee
Q psy17941 328 QMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVG 407 (679)
Q Consensus 328 ~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~~ 407 (679)
.++.+..++..+|++.-.+++...+.+ ....+.+|+...
T Consensus 400 ----------------------------ii~l~~~~~~~lg~~~~~i~l~~r~~~--~~g~~~~~~~~~----------- 438 (638)
T PRK00413 400 ----------------------------VIDLILDVYKDFGFEDYEVKLSTRPEK--RIGSDEMWDKAE----------- 438 (638)
T ss_pred ----------------------------HHHHHHHHHHHcCCceEEEEEecCCcc--cCCCHHHHHHHH-----------
Confidence 233455677788886554443322111 111112232110
Q ss_pred ccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhcCHhHHHHHHHhhhcCCcE
Q psy17941 408 CADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKY 487 (679)
Q Consensus 408 ~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~~~~~~~~~~l~~~g~~ 487 (679)
-.+.......|.+... ......++||++.. .+.+.+++.. +.+++
T Consensus 439 ------~~l~~~l~~~g~~~~~--------------~~~~~~~~~~~~~~---~~~~~~~~~~------------~l~~~ 483 (638)
T PRK00413 439 ------AALKEALDELGLDYEI--------------APGEGAFYGPKIDF---QLKDALGREW------------QCGTI 483 (638)
T ss_pred ------HHHHHHHHHcCCCcee--------------cCCccccccceEEE---EeecCCCCeE------------EeccE
Confidence 0111111122222211 11233456765532 1223322211 22333
Q ss_pred EEeec-CceeeeccceeEEeeeecccceeEeccceeecc--ccHHHHHHHHHHhccccCCCccccccccCCCCCCCceEE
Q psy17941 488 ELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPS--FGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKAS 564 (679)
Q Consensus 488 ~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s--~GIeRll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~ 564 (679)
+++.. ++.|++ +|+...+ +...|.+|+++ .|+||++++|.++.. ..||+|++|.+|+
T Consensus 484 ~~d~~~~~~~dl--------~Yt~~~~-~~~~p~~i~~~~~g~~eRli~~l~e~~~-----------~~~p~~~~p~~v~ 543 (638)
T PRK00413 484 QLDFNLPERFDL--------TYVGEDG-EKHRPVMIHRAILGSMERFIGILIEHYA-----------GAFPTWLAPVQVV 543 (638)
T ss_pred eecccChhhcCC--------EEECCCC-CccCcEEEEecceehHHHHHHHHHHHcC-----------CCCCcccCcceEE
Confidence 33332 333433 3776544 34578886555 369999999887632 3699999999999
Q ss_pred EEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCceEEEe
Q psy17941 565 ILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVK 644 (679)
Q Consensus 565 Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~ 644 (679)
|+|++++ ...+|.+|++.||++|++|++|+++.++++|+++|++.|+||+||||++|+ ++|+|+||+|++++|.+++
T Consensus 544 Ii~~~~~--~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kki~~A~~~g~~~~iiiG~~E~-~~~~v~vr~~~~~~q~~i~ 620 (638)
T PRK00413 544 VLPITDK--HADYAKEVAKKLKAAGIRVEVDLRNEKIGYKIREAQLQKVPYMLVVGDKEV-EAGTVSVRRRGGKDLGTMS 620 (638)
T ss_pred EEEeChh--HHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHhhccCCCEEEEEcchhh-hcCeEEEEECCCCccceee
Confidence 9999753 778999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred hHHHHHHHHHHHhccc
Q psy17941 645 VNEVASVIKDLSLAKI 660 (679)
Q Consensus 645 i~el~~~l~~l~~~~~ 660 (679)
++++++.|.+++.++.
T Consensus 621 ~~~l~~~i~~~~~~~~ 636 (638)
T PRK00413 621 LDEFIERLLEEIASRS 636 (638)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999998887643
No 23
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-45 Score=401.10 Aligned_cols=388 Identities=22% Similarity=0.278 Sum_probs=277.6
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHL 168 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~ 168 (679)
.++|+.||+|..+.+|+.|++.+++.+ .++||.||+||+|+..++|.++ .+..+|.+ +
T Consensus 6 ~prG~~D~lp~d~~~~~~i~~~~~~v~-~~yGf~eI~TPifE~telf~r~--~Ge~td~v-----~-------------- 63 (429)
T COG0124 6 RPRGTRDFLPEDMALREYIESTIRKVF-ESYGFSEIRTPIFEYTELFARK--SGEETDVV-----E-------------- 63 (429)
T ss_pred CCCCccccChHHHHHHHHHHHHHHHHH-HHcCCEeccCccccchhHhhhc--cCCccccc-----c--------------
Confidence 379999999999999999999999999 9999999999999999999864 23333321 1
Q ss_pred HHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchh
Q psy17941 169 EKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQ 248 (679)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aq 248 (679)
+||+++.++ |++...||||+|+
T Consensus 64 -----------------------------kemY~F~Dk-----------------------------ggr~laLRpe~Ta 85 (429)
T COG0124 64 -----------------------------KEMYTFKDK-----------------------------GGRSLALRPELTA 85 (429)
T ss_pred -----------------------------cceEEEEeC-----------------------------CCCEEEecccCcH
Confidence 334333222 6778899999999
Q ss_pred hHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhc
Q psy17941 249 GIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQ 328 (679)
Q Consensus 249 gi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~ 328 (679)
+++|.+.++.... ..|+++|++|+|||+| +|+.| |+|||+|++++.|+.++... |+++
T Consensus 86 pv~R~~~en~~~~--~~p~k~yy~g~vfRyE-rPQ~G--R~RqF~Q~g~E~iG~~~~~~--------DAEv--------- 143 (429)
T COG0124 86 PVARAVAENKLDL--PKPLKLYYFGPVFRYE-RPQKG--RYRQFYQFGVEVIGSDSPDA--------DAEV--------- 143 (429)
T ss_pred HHHHHHHhccccc--cCCeeEEEecceecCC-CCCCC--CceeeEEcCeEEeCCCCccc--------CHHH---------
Confidence 9999998764322 2799999999999999 99999 99999999999999887653 5554
Q ss_pred cCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhh--ccCccccccccCccchhhhccCCceeee
Q psy17941 329 MDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQ--HMGNEMAHYACDCWDAECLTSYGWVECV 406 (679)
Q Consensus 329 ~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~--~~~~e~~~ya~~~~d~e~~~~~g~~e~~ 406 (679)
++.+..++.++|+..-.++.+. .+. ...-|..- -+.+. +.
T Consensus 144 ----------------------------i~l~~~~l~~lGi~~~~l~iN~~g~l~-~~~~~~gi-~~~~~--------l~ 185 (429)
T COG0124 144 ----------------------------IALAVEILEALGIGGFTLEINSRGILE-GRLEYLGI-DQREA--------LL 185 (429)
T ss_pred ----------------------------HHHHHHHHHHcCCCcEEEEEcCcccHH-HHHHhhcc-hhHHH--------HH
Confidence 2223344455555532222110 000 00000000 00000 00
Q ss_pred eccccch----hhHhHHHHHhCCcccccccCCCCccceeecccCcccccC-ccccchhhHHHHHhhhcCHhHHHHHHHhh
Q psy17941 407 GCADRSA----YDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIG-KEFKKDAKTICDALAALDLNSVSAVEESL 481 (679)
Q Consensus 407 ~~~~r~~----~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G-~~~~~~~~~i~d~L~~~~~~~~~~~~~~l 481 (679)
..-+..+ -.|+...+ ..+ -.+|.++. +++.-. ..+..++|.+.|++...+.++++.+...|
T Consensus 186 ~~ldk~~k~~~~~L~e~~~---~r~-----~~n~lr~l------d~k~~~~~~~~~~ap~i~~~~~~e~~~~~~~v~~~L 251 (429)
T COG0124 186 RYLDKLDKIGKLELDEDSK---RRL-----KTNPLRVL------DSKKDSDQELLKNAPELLDYLDEESLEHLEELLALL 251 (429)
T ss_pred HHHhhhhhHHHHHhhhhhh---hhh-----hhchHHHH------HhccchHHHHHhccHHhhhhccHHHHHHHHHHHHHH
Confidence 0000111 01111110 000 11333331 111111 23445689999998765666777777777
Q ss_pred hcCCcEEEeecCceeeeccceeE-Eeeeecccc---------------eeEe-----------ccceeeccccHHHHHHH
Q psy17941 482 NTNGKYELLVDDKEFVLTKDMIS-IKKSTKTFH---------------VEEI-----------IPSVIEPSFGIGRIMYA 534 (679)
Q Consensus 482 ~~~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~---------------~~~~-----------~P~vi~~s~GIeRll~a 534 (679)
+.. |.+|.+++.+|| ++|||.+++ |++| +|+| ++|+|+|||+.+
T Consensus 252 ~~~--------g~~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pav-GFaiGveRl~~~ 322 (429)
T COG0124 252 DAL--------GISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAV-GFAIGVERLILA 322 (429)
T ss_pred HHc--------CCCEEEccceecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCCCce-eEehHHHHHHHH
Confidence 644 457999999999 899999986 4566 7877 799999999988
Q ss_pred HHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCC
Q psy17941 535 LFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIP 614 (679)
Q Consensus 535 l~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip 614 (679)
|.+.+. ..| ..++.+|+|++++++ ...++..+++.||++|+++++|...+++++||++|++.|++
T Consensus 323 l~~~~~------------~~~-~~~~~~v~v~~~~~~--~~~~a~~la~~LR~~g~~~~~~~~~r~~k~q~k~A~~~g~~ 387 (429)
T COG0124 323 LEEEGK------------EDP-VETRVDVYVVPLGED--AEPEALKLAQKLRAAGISVEVDYSGRKLKKQFKYADKLGAR 387 (429)
T ss_pred HHHcCC------------CCC-cCCCCCEEEEEcCch--hHHHHHHHHHHHHHcCCcEEEEeccccHHHHHHHHHHCCCC
Confidence 876531 111 125789999999865 46899999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHH
Q psy17941 615 FGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDL 655 (679)
Q Consensus 615 ~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l 655 (679)
|+||||++|+ ++|+|+||||.|++|..++++++++.+...
T Consensus 388 ~~viiGe~E~-~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~ 427 (429)
T COG0124 388 FAVILGEDEL-ANGVVTVKDLATGEQEEVPLDELVEELKEL 427 (429)
T ss_pred EEEEEcchHH-hcCCEEEeeCCCCccceecHHHHHHHHHhh
Confidence 9999999999 899999999999999999999999988754
No 24
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-42 Score=388.89 Aligned_cols=386 Identities=23% Similarity=0.314 Sum_probs=296.3
Q ss_pred HHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCcee
Q psy17941 71 EDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVK 150 (679)
Q Consensus 71 ~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~ 150 (679)
..+.++.+++.-+.++ ++|++.|+|.|+.+++.|+++|+... ...||++|.||++...++|+.||||++|.++||.
T Consensus 193 rklg~el~LF~~~~~~---~~G~~~~~pkG~~ir~~le~y~~~~~-~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~ 268 (589)
T COG0441 193 RKLGKELDLFSFSPEE---GPGLPFWHPKGATIRNLLEDYVRTKL-RSYGYQEVKTPVLADLELWELSGHWDNYKEDMFL 268 (589)
T ss_pred HhHHHhhcceeecccc---CCcceEECCCcccHHHHHHHHHHHHH-HhcCceEecCCeeeecccchhccchhhcccccee
Confidence 4577777776443233 79999999999999999999999999 8889999999999999999999999999999998
Q ss_pred eCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhc
Q psy17941 151 DLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFAT 230 (679)
Q Consensus 151 d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~ 230 (679)
....++. +++ ..|+||. |++||++
T Consensus 269 ~~~~~~~---------------------------------~~l-------------KpmNCpg----------h~~ifk~ 292 (589)
T COG0441 269 TESDDRE---------------------------------YAL-------------KPMNCPG----------HILIFKS 292 (589)
T ss_pred eccCChh---------------------------------hee-------------eeccCHh----------HHHHHhc
Confidence 6554321 122 2467764 6788886
Q ss_pred ccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCC-CCCcccccceeEeeEEEEeCCCcchhh
Q psy17941 231 QIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP-RSGLIRVREFTMAEIEHFCDPTDKSHA 309 (679)
Q Consensus 231 ~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p-r~Gl~R~REF~q~e~~~F~~~~~~~~~ 309 (679)
.. .+| ++||++++++|.|||+|.|+ ..||.|+|.|+|.|+|+||.+++...+
T Consensus 293 ~~------~SY---------------------R~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E 345 (589)
T COG0441 293 GL------RSY---------------------RELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDE 345 (589)
T ss_pred CC------cce---------------------eccchhhhhcceeecccCcchhhccccccceeecccceeccHHHHHHH
Confidence 53 567 89999999999999999988 499999999999999999998876432
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCcc--chhhhhccCcccccc
Q psy17941 310 KFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPE--KLRFRQHMGNEMAHY 387 (679)
Q Consensus 310 ~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~--~~~~r~~~~~e~~~y 387 (679)
. . . .+.-+..++..+|+..- .+++|+. ...
T Consensus 346 ~-~--------~----------------------------------~~~~i~~v~~~fg~~~y~~~ls~r~k-----~ig 377 (589)
T COG0441 346 F-K--------G----------------------------------ILELILEVYKDFGFTDYEVKLSTRPK-----FIG 377 (589)
T ss_pred H-H--------H----------------------------------HHHHHHHHHHhcCCceEEEEEecCCc-----ccC
Confidence 1 1 1 11223344467888622 3333321 111
Q ss_pred ccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhh
Q psy17941 388 ACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALA 467 (679)
Q Consensus 388 a~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~ 467 (679)
+...|+... -.|....+..+.++. ...+.++|+||++.. .+.|+|.
T Consensus 378 ~d~~W~~a~-----------------~~l~~al~~~~~~~~--------------~~~G~~aFyGPKid~---~v~Dalg 423 (589)
T COG0441 378 SDEMWDKAE-----------------AALREALKEIGVEYV--------------EEPGEGAFYGPKIDF---QVKDALG 423 (589)
T ss_pred ChhhhHHHH-----------------HHHHHHHHhhCceee--------------ecCCceEEECcccce---EEEeccC
Confidence 223343221 112222233333332 224678999998764 3567766
Q ss_pred hcCHhHHHHHHHhhhcCCcEEEeec-CceeeeccceeEEeeeecccceeEeccceeeccc-c-HHHHHHHHHHhccccCC
Q psy17941 468 ALDLNSVSAVEESLNTNGKYELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSF-G-IGRIMYALFEHNFKMRD 544 (679)
Q Consensus 468 ~~~~~~~~~~~~~l~~~g~~~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~-G-IeRll~al~e~~~~~~~ 544 (679)
+.. ++|+++++.+ +.+|.+. |.. .+++...|.|++.++ | +||.+++|+|+..
T Consensus 424 r~~------------q~~TIQlDf~lpeRF~l~--------Yv~-~d~~~~~PvmiHrai~GSiERfi~iLiE~~~---- 478 (589)
T COG0441 424 REW------------QLGTIQLDFNLPERFDLE--------YVD-EDGEKKRPVIIHRAILGSIERFIGILLEHYA---- 478 (589)
T ss_pred cce------------ecceEEEecCChhhceEE--------EEc-CCCCccCCEEEEeccchhHHHHHHHHHHhcc----
Confidence 533 4677777775 7888886 554 345566899998884 4 9999999999632
Q ss_pred CccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCC
Q psy17941 545 GDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTL 624 (679)
Q Consensus 545 ~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El 624 (679)
+.||.|+||+||.|+|++++ ...+|.++++.|++.||+|++|+++.+++++++.|...++||+||||++|+
T Consensus 479 -------G~~P~WLaPvQv~VipV~~~--~~~ya~~v~~~L~~~giRvdvD~~~e~l~kKIR~a~~~kipyiiVvG~kE~ 549 (589)
T COG0441 479 -------GALPTWLAPVQVRVIPVADE--HLDYAKEVAEKLRKAGIRVDIDDRNEKLGKKIREAGTQKIPYVIVVGDKEV 549 (589)
T ss_pred -------CCCcccCCccEEEEEEeChH--HHHHHHHHHHHHHHcCCeeeecccccchHHHHHHHHhcCCCEEEEEchhhh
Confidence 58999999999999999864 679999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEECCCCceEEEehHHHHHHHHHHHhccc
Q psy17941 625 KEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKI 660 (679)
Q Consensus 625 ~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~~ 660 (679)
++++|++|.|.++++..++++++++.+++.+.++.
T Consensus 550 -e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~~~~ 584 (589)
T COG0441 550 -ETGTVVVRRRGGKQQKSMTLEELVEELKKEIEGRP 584 (589)
T ss_pred -ccCceEEEEccCCccccccHHHHHHHHHHHhhccc
Confidence 89999999999999999999999999988777654
No 25
>KOG1637|consensus
Probab=100.00 E-value=1.1e-42 Score=367.10 Aligned_cols=366 Identities=22% Similarity=0.320 Sum_probs=281.2
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLE 169 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~ 169 (679)
.+|.+.|+|.|+++.|.|.+++|.++ ...||.||.||.+....+|++||||++|.++||+....++.
T Consensus 181 SPGS~FflP~G~~iyN~Lv~fir~ey-~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~------------ 247 (560)
T KOG1637|consen 181 SPGSCFFLPHGTRIYNTLVDFIRAEY-RKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEE------------ 247 (560)
T ss_pred CCcceeeccCcchHHHHHHHHHHHHH-HhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechhh------------
Confidence 69999999999999999999999999 88899999999999999999999999999999986543321
Q ss_pred HhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhh
Q psy17941 170 KLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQG 249 (679)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqg 249 (679)
+.+ .+|+||. |||||+++- ++|
T Consensus 248 ---------------------~~L-------------KPMNCPg----------HcLmf~~r~------rS~-------- 269 (560)
T KOG1637|consen 248 ---------------------FAL-------------KPMNCPG----------HCLMFAHRD------RSY-------- 269 (560)
T ss_pred ---------------------hcc-------------CccCCCc----------cccccccCC------ccH--------
Confidence 122 3588885 799999863 567
Q ss_pred HHHHHHHhhhhccCCCCeeeecccccccCCCCC-CCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhc
Q psy17941 250 IFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP-RSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQ 328 (679)
Q Consensus 250 i~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p-r~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~ 328 (679)
+.||++++.+|..+|||+|+ -+||.|+|+|+|.|+|+||.|+|...+ |..
T Consensus 270 -------------reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~E------------ik~---- 320 (560)
T KOG1637|consen 270 -------------RELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEE------------IKG---- 320 (560)
T ss_pred -------------hhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHH------------HHH----
Confidence 89999999999999999998 599999999999999999999986421 111
Q ss_pred cCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCcc-chhhhhccCccccccc--cCccchhhhccCCceee
Q psy17941 329 MDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPE-KLRFRQHMGNEMAHYA--CDCWDAECLTSYGWVEC 405 (679)
Q Consensus 329 ~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~-~~~~r~~~~~e~~~ya--~~~~d~e~~~~~g~~e~ 405 (679)
.+. |+.-++. -+|.... .++.|+ + .|. -+|||
T Consensus 321 -----------------------~l~-fl~~vY~---~fgf~f~l~lSTRP----e--~~lG~l~~Wd------------ 355 (560)
T KOG1637|consen 321 -----------------------CLD-FLDYVYG---VFGFTFKLNLSTRP----E--KFLGDLETWD------------ 355 (560)
T ss_pred -----------------------HHH-HHHHHHH---hccccceeEeccCh----H--HhccCHHHHH------------
Confidence 122 4444444 3453322 222221 1 111 12333
Q ss_pred eeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhcCHhHHHHHHHhhhcCC
Q psy17941 406 VGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNG 485 (679)
Q Consensus 406 ~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~~~~~~~~~~l~~~g 485 (679)
.+..+|....+.+|.+.. + ...|++||||+++- .|.|+|.+.. ++.
T Consensus 356 -----~AE~~L~~al~e~g~pw~----------l----N~GDGAFYGPKIDi---~l~Dal~r~h------------Qca 401 (560)
T KOG1637|consen 356 -----EAEFKLEEALNESGEPWV----------L----NPGDGAFYGPKIDI---TLDDALGRKH------------QCA 401 (560)
T ss_pred -----HHHHHHHHHHHHhCCCce----------e----cCCCcccccceeee---EhhhhcCccc------------cee
Confidence 345567776666666543 2 24899999998863 4677776533 344
Q ss_pred cEEEeec-CceeeeccceeEEeeeecccceeEeccceeecc-cc-HHHHHHHHHHhccccCCCccccccccCCCCCCCce
Q psy17941 486 KYELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPS-FG-IGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLK 562 (679)
Q Consensus 486 ~~~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s-~G-IeRll~al~e~~~~~~~~~~~r~~l~~P~~laP~~ 562 (679)
+++++.. +.+|++. |.. -.|...+|.+|+.+ +| +||+++.|.|+.. ++||.|++|.+
T Consensus 402 TIQLDFqLP~rFdL~--------y~~-~~g~~erPVmIHRAIlGSvERmiaiL~E~~~-----------gkwPFWlSPRq 461 (560)
T KOG1637|consen 402 TIQLDFQLPIRFDLE--------YET-EDGDLERPVMIHRAILGSVERMIAILLESYG-----------GKWPFWLSPRQ 461 (560)
T ss_pred eeeecccChhhcCce--------eec-ccccccchhhHHHHHhhhHHHHHHHHHHHhC-----------CCCCeeeccce
Confidence 5565543 6666665 321 12334579888877 56 9999998888753 68999999999
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCC---Cc
Q psy17941 563 ASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDS---MT 639 (679)
Q Consensus 563 V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t---~~ 639 (679)
+.|+|++.. ...+|..+.++|+.+|+.+.+|.++.+++|+++.|...+..|++|||++|+ +.++|.||.|++ ..
T Consensus 462 ~~vIpVse~--~~~ya~~V~~ql~~a~f~~Dld~t~~tl~kkir~Aqla~yn~i~VVGdkE~-~~~~vnVr~Rd~~~~~~ 538 (560)
T KOG1637|consen 462 AVVIPVSEG--PLDYATSVQKQLEEAGFYVDLDPTDSTLRKKIRNAQLAHYNFIFVVGDKEV-ETGRVNVRTRDNRDNKT 538 (560)
T ss_pred EEEEECCCc--chhHHHHHHHHHHhhhceeecCCccchHHHHHhhhhhcceeEEEEEchhhh-hcCceeeeccccccccc
Confidence 999999864 678999999999999999999988899999999999999999999999999 899999999854 45
Q ss_pred eEEEehHHHHHHHHHHHh
Q psy17941 640 QVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 640 q~~v~i~el~~~l~~l~~ 657 (679)
+.+++++++.+.+.++-.
T Consensus 539 ~~~~tie~~~~~~~~l~~ 556 (560)
T KOG1637|consen 539 ESEMTIEELSDEFKELKS 556 (560)
T ss_pred cceeeHHHHHHHHHHhHh
Confidence 668899999887776543
No 26
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=9.7e-40 Score=359.54 Aligned_cols=282 Identities=18% Similarity=0.249 Sum_probs=229.0
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHhhHHHhhc--------------CCCCCCCChHH
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEGAP-ELDVKKAVAELKLRKKVLDERELKL--------------APFVSSFDRAK 69 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~~~-~~~i~~~v~~l~~~~~~le~~~~~~--------------~~~~~~~~~~~ 69 (679)
..+.++++|++++|+.|++|+++++.+.+ .+++++++++|++++++|+++..++ .-+++|++.++
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g~~~ 120 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGKDE 120 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCc
Confidence 45788999999999999999998877766 7899999999999999888873321 22577777655
Q ss_pred HHHH-HHHhc----c---ccchhhh------c----C---CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCc
Q psy17941 70 MEDL-LKRRF----F---YDQSFSI------Y----G---GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSI 128 (679)
Q Consensus 70 ~~~l-~~r~~----f---~~~~~ei------~----~---~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~ 128 (679)
.++. +++.| | ..+|.+| + | .++|+|.|+|.|++|+++|++++++.+ .+.||.+|.+|.
T Consensus 121 ~~n~~~~~~g~~~~~~~~~~~H~~l~~~l~l~d~~~~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~-~~~G~~~v~~P~ 199 (418)
T TIGR00414 121 EDNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERALINFMLDLL-EKNGYQEIYPPY 199 (418)
T ss_pred ccCeEeeecCCCCCCCCCCCCHHHHHHhCCCccccccccCCCCCeeeeccHHHHHHHHHHHHHHHHH-HHcCCEEEeCCc
Confidence 4443 23222 1 1233333 1 1 367899999999999999999999999 788999999999
Q ss_pred ccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcC
Q psy17941 129 LTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYN 208 (679)
Q Consensus 129 l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~ 208 (679)
|.+.++|++||||++|.++||+.... + ++|.||+|..++.+.+..
T Consensus 200 lv~~~~~~~~G~~~~f~~~~y~i~~~-~----------------------------------~~L~pTsE~~~~~~~~~~ 244 (418)
T TIGR00414 200 LVNEESLDGTGQLPKFEEDIFKLEDT-D----------------------------------LYLIPTAEVPLTNLHRNE 244 (418)
T ss_pred cccHHHHhhcCccccccccceEecCC-C----------------------------------EEEEeCCcHHHHHHHhCc
Confidence 99999999999999999999985321 1 479999999999988877
Q ss_pred CCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCC----C
Q psy17941 209 IKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPR----S 284 (679)
Q Consensus 209 i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr----~ 284 (679)
+.| | ++||++++|+|+|||+|++|+ +
T Consensus 245 i~s-----------------------------~---------------------~~LPlr~~~~s~~FR~E~g~~G~~t~ 274 (418)
T TIGR00414 245 ILE-----------------------------E---------------------EELPIKYTAHSPCFRSEAGSYGKDTK 274 (418)
T ss_pred CCC-----------------------------h---------------------HhCCeeEEEEcccccCCCCccCCCCC
Confidence 665 4 899999999999999999874 6
Q ss_pred CcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHH
Q psy17941 285 GLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFM 364 (679)
Q Consensus 285 Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l 364 (679)
||+|+|||+|.|+++||.|+++. .. +..++...+.++
T Consensus 275 GL~Rv~qF~k~E~~~f~~~e~s~-~~------------------------------------------~~~~~~~~~~i~ 311 (418)
T TIGR00414 275 GLIRVHQFNKVELVKFCKPEESA-EE------------------------------------------LEEMTSDAEQIL 311 (418)
T ss_pred ccccccceeeeeEEEEcCHHHHH-HH------------------------------------------HHHHHHHHHHHH
Confidence 99999999999999999997653 21 222455566778
Q ss_pred HHcCCCccchhhhhccCccccccccCccchhhhccC--CceeeeeccccchhhHhH
Q psy17941 365 ISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY--GWVECVGCADRSAYDLTQ 418 (679)
Q Consensus 365 ~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~~dl~~ 418 (679)
..+|+++..+. ..+++|++++..+||+|.|+|. +|.|+++|++++||+.+.
T Consensus 312 ~~Lglp~r~v~---~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn~~d~qsrr 364 (418)
T TIGR00414 312 QELELPYRVVN---LCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCTDFQARR 364 (418)
T ss_pred HHcCCceEEEe---cCccccccCHhhhhhHHHhCCCcCceEEEEEEcCcchHhHHh
Confidence 88999987554 3567999999999999999987 799999999999998764
No 27
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=3.3e-38 Score=350.15 Aligned_cols=383 Identities=16% Similarity=0.161 Sum_probs=262.9
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc-C-CcccccCCceeeCCCCcccchhhhHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS-G-HVDRFADLMVKDLKTGECFRLDHLIKA 166 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S-G-h~~~f~d~m~~d~~~~~~~r~d~l~~~ 166 (679)
.++|+.||+|..+..++.|++.+++.| .++||.+|.||+|+..++|.++ | |++.+.+.||+....
T Consensus 6 ~p~G~~D~lp~~~~~~~~i~~~i~~~~-~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~------------ 72 (430)
T CHL00201 6 AIRGTKDILPDEINYWQFIHDKALTLL-SLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDR------------ 72 (430)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHH-HHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcC------------
Confidence 379999999999999999999999999 9999999999999999999875 5 887777788773221
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccc
Q psy17941 167 HLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPET 246 (679)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~ 246 (679)
+++...||||.
T Consensus 73 ---------------------------------------------------------------------~g~~l~LRpd~ 83 (430)
T CHL00201 73 ---------------------------------------------------------------------SNRDITLRPEG 83 (430)
T ss_pred ---------------------------------------------------------------------CCCEEEeCCCC
Confidence 12245899999
Q ss_pred hhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHh
Q psy17941 247 AQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSAC 326 (679)
Q Consensus 247 aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~ 326 (679)
|.++.|.|..... +.+.+|+++|++|++||+| +|+.| |+|||+|+++|.|+.++..+ |+++
T Consensus 84 T~~iaR~~~~~~~-~~~~~p~R~~y~g~vfR~e-~~q~G--R~Ref~Q~g~EiiG~~~~~a--------D~Ev------- 144 (430)
T CHL00201 84 TAGIVRAFIENKM-DYHSNLQRLWYSGPMFRYE-RPQSG--RQRQFHQLGIEFIGSIDARA--------DTEV------- 144 (430)
T ss_pred cHHHHHHHHHccc-cccCCCeEEEEEcceecCC-CCcCC--ccceeEEeceEEECCCChhh--------HHHH-------
Confidence 9999999865422 2356899999999999999 89999 99999999999999887653 5554
Q ss_pred hccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccC-ccchhhhccCCceee
Q psy17941 327 NQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACD-CWDAECLTSYGWVEC 405 (679)
Q Consensus 327 ~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~-~~d~e~~~~~g~~e~ 405 (679)
+..+..++..+|++.-.+.+.. .+..... .+. +.+ .+..+-
T Consensus 145 ------------------------------i~l~~~~l~~lGl~~~~i~l~~-----~~~~~~~~~~~-~~l--~~~l~~ 186 (430)
T CHL00201 145 ------------------------------IHLAMQIFNELQVKNLILDINS-----IGKLEDRQSYQ-LKL--VEYLSQ 186 (430)
T ss_pred ------------------------------HHHHHHHHHHcCCCceEEEECC-----CCchhhHHHHH-HHH--HHHHHH
Confidence 2223455666776532222110 0000000 000 000 000000
Q ss_pred eeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccC-ccccchhhHHHHHhhhcCHhHHHHHHHhhhcC
Q psy17941 406 VGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIG-KEFKKDAKTICDALAALDLNSVSAVEESLNTN 484 (679)
Q Consensus 406 ~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G-~~~~~~~~~i~d~L~~~~~~~~~~~~~~l~~~ 484 (679)
. ....+..........++.. ++++..+ ....+.++.+.+++...+.+++..+...++..
T Consensus 187 --~--~~~~~~~~~~~l~~~~~~~----------------l~~k~~~~~~~~~~a~~l~~~~~~~~~~~l~~~~~~l~~~ 246 (430)
T CHL00201 187 --Y--QDDLDTDSQNRLYSNPIRI----------------LDSKNLKTQEILDGAPKISDFLSLESTEHFYDVCTYLNLL 246 (430)
T ss_pred --H--HhhcCHHHHHHHHhhhHHH----------------hhccCccHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHc
Confidence 0 0000000000000111110 0111111 12223355566655432333344444444322
Q ss_pred CcEEEeecCceeeeccceeE-Eeeeecccc---------------eeEe-----------ccceeeccccHHHHHHHHHH
Q psy17941 485 GKYELLVDDKEFVLTKDMIS-IKKSTKTFH---------------VEEI-----------IPSVIEPSFGIGRIMYALFE 537 (679)
Q Consensus 485 g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~---------------~~~~-----------~P~vi~~s~GIeRll~al~e 537 (679)
|..|.+++.+|+ ++|||..++ |++| .|+| ++|+|+|||+.+|.+
T Consensus 247 --------g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~~~~Pav-Gfa~g~erl~~~l~~ 317 (430)
T CHL00201 247 --------NIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAV-GCAIGLERLLLIAKD 317 (430)
T ss_pred --------CCcEEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCCCCCCee-EEEecHHHHHHHHhc
Confidence 345788888888 788887543 3455 6777 799999999986643
Q ss_pred hccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEE
Q psy17941 538 HNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGI 617 (679)
Q Consensus 538 ~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~I 617 (679)
+ ...|. .|.+|+|+|++++ ...+|.++++.||++|++|++|....++++++++|++.|+||++
T Consensus 318 -~------------~~~~~--~~~~v~v~~~~~~--~~~~a~~ia~~LR~~Gi~veid~~~~~l~k~~k~A~~~~~~~vi 380 (430)
T CHL00201 318 -N------------IILPK--QSIDVYIATQGLK--AQKKGWEIIQFLEKQNIKFELDLSSSNFHKQIKQAGKKRAKACI 380 (430)
T ss_pred -c------------ccCCC--CCCCEEEEEcCHH--HHHHHHHHHHHHHhCCCeEEEeeCCCCHHHHHHHHHHcCCCEEE
Confidence 2 12232 4678999998653 67899999999999999999998889999999999999999999
Q ss_pred EEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 618 TIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 618 iVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
|||++|+ ++++|+||++.+++|..++++++++.+.++..
T Consensus 381 iiG~~E~-~~~~vtvk~l~~~~q~~i~~~~~~~~~~~~~~ 419 (430)
T CHL00201 381 ILGDNEI-MDNCITIKWLDEQVQENAQYSNFKQEISYLKK 419 (430)
T ss_pred EEechHH-hCCcEEEEECCCCCcEEEcHHHHHHHHHHHHH
Confidence 9999999 89999999999999999999999998877654
No 28
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-37 Score=344.05 Aligned_cols=283 Identities=18% Similarity=0.208 Sum_probs=229.9
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhc--------------CCCCCCCChHHH
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKL--------------APFVSSFDRAKM 70 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~--------------~~~~~~~~~~~~ 70 (679)
..+.++++||+++|+.|++|+++++++.+.+++++++++|++++++++++...+ .-+++|++.++.
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~g~~~~ 118 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDED 118 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCC
Confidence 467889999999999999999988877778889999999999999888774331 225788877665
Q ss_pred HHHH-HHhcc-------ccchhhh------c-------CCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcc
Q psy17941 71 EDLL-KRRFF-------YDQSFSI------Y-------GGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSIL 129 (679)
Q Consensus 71 ~~l~-~r~~f-------~~~~~ei------~-------~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l 129 (679)
++.+ ++.|- ..+|.+| + -.++|+|.|.|.|++|+++|++++++.+..+.||++|.+|.|
T Consensus 119 ~n~~i~~~g~~~~~~f~~~dH~ei~~~l~l~d~~~~~~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~l 198 (425)
T PRK05431 119 DNVEVRRWGEPREFDFEPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYL 198 (425)
T ss_pred CceEEEEeCCCCCCCCCCCCHHHHHhhcCceecccccccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEecccc
Confidence 5533 33231 1244443 1 136789999999999999999999999833899999999999
Q ss_pred cchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCC
Q psy17941 130 TLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNI 209 (679)
Q Consensus 130 ~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i 209 (679)
.+.++|.+||||++|.++||+... .+ ++|.||+|+.++.+.+..+
T Consensus 199 v~~~~~~~~G~~~~f~~~ly~i~~-~~----------------------------------~~L~pTsE~~l~~l~~~~~ 243 (425)
T PRK05431 199 VNEESMYGTGQLPKFEEDLYKIED-DD----------------------------------LYLIPTAEVPLTNLHRDEI 243 (425)
T ss_pred ccHHHHhhcCccccchhhceEecC-CC----------------------------------EEEEeCCcHHHHHHHhccc
Confidence 999999999999999999998532 11 4799999999999888777
Q ss_pred CCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCC----CCC
Q psy17941 210 KSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP----RSG 285 (679)
Q Consensus 210 ~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p----r~G 285 (679)
.| | ++||++++|+|+|||+|+++ +.|
T Consensus 244 ~s-----------------------------~---------------------~dLPlr~~~~s~~fR~Eag~~g~~~~G 273 (425)
T PRK05431 244 LD-----------------------------E---------------------EELPLKYTAYSPCFRSEAGSAGRDTRG 273 (425)
T ss_pred CC-----------------------------H---------------------HhCCeeEEEEcCEecCCCCcCCCCCCc
Confidence 65 4 89999999999999999976 699
Q ss_pred cccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHH
Q psy17941 286 LIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMI 365 (679)
Q Consensus 286 l~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~ 365 (679)
|+|+|||+|.|+|+||.|+++. ..| ..++...+.++.
T Consensus 274 L~Rv~qF~k~E~~~f~~~e~s~-~~~------------------------------------------~~~l~~~~~i~~ 310 (425)
T PRK05431 274 LIRVHQFDKVELVKFTKPEDSY-AEL------------------------------------------EELTANAEEILQ 310 (425)
T ss_pred eeeeeeeeeeeEEEEECHHHHH-HHH------------------------------------------HHHHHHHHHHHH
Confidence 9999999999999999996543 222 224455667778
Q ss_pred HcCCCccchhhhhccCccccccccCccchhhhcc--CCceeeeeccccchhhHhH
Q psy17941 366 SVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTS--YGWVECVGCADRSAYDLTQ 418 (679)
Q Consensus 366 ~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~--~g~~e~~~~~~r~~~dl~~ 418 (679)
.+|+++..+. ..+++|++.+..++|+|.|+| .+|.|+++|++++||+.+.
T Consensus 311 ~Lglpyr~v~---~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc~d~qsrr 362 (425)
T PRK05431 311 KLELPYRVVL---LCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDFQARR 362 (425)
T ss_pred HcCCcEEEEE---cCCcccCCchHheecHHHhCcccCCeeEEEEecCccchhhhh
Confidence 8999976544 366789999999999999998 4699999999999998764
No 29
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=9e-37 Score=335.25 Aligned_cols=284 Identities=15% Similarity=0.179 Sum_probs=231.1
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhc--------------CCCCCCCChHHH
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKL--------------APFVSSFDRAKM 70 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~--------------~~~~~~~~~~~~ 70 (679)
..+.++++|++++|+.|++|+++++++.+.+++.+++++|+++++.|+.+...+ ..|++|++.++.
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~G~de~ 123 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVSNDEA 123 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcC
Confidence 467899999999999999999998888888999999999999999888773321 236888877665
Q ss_pred HHHHHH-hccc------cchhhh------c----C---CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCccc
Q psy17941 71 EDLLKR-RFFY------DQSFSI------Y----G---GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILT 130 (679)
Q Consensus 71 ~~l~~r-~~f~------~~~~ei------~----~---~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~ 130 (679)
++.+.| .|-- .+|.+| + | +++++|.|.+.|++|.++|++++++.+ .+.||.+|.+|.|.
T Consensus 124 ~n~~vr~~g~~~~~~~~~dH~~Lg~~l~l~d~~~~~~vsG~~~y~l~g~ga~L~~AL~~y~ld~~-~~~Gy~~V~~P~lv 202 (448)
T PLN02678 124 NNAVVRTWGEKRQEPKLKNHVDLVELLGIVDTERGADVAGGRGYYLKGAGVLLNQALINFGLAFL-RKRGYTPLQTPFFM 202 (448)
T ss_pred CCEEEEEEcCCCCCCCCCCHHHHHhhccCccchhhhhhcCceeEEECCHHHHHHHHHHHHHHHHH-HHcCCEEEECcccc
Confidence 544333 3321 244433 1 0 345677777799999999999999998 78899999999999
Q ss_pred chhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCC
Q psy17941 131 LEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIK 210 (679)
Q Consensus 131 ~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~ 210 (679)
+.++|.+||||++|.+.||+....++ ..++.+|+|.+.+.++...+.
T Consensus 203 ~~~~~~~sG~~~~f~e~my~i~~~~~---------------------------------~~yLi~TaE~~l~~~h~~~~~ 249 (448)
T PLN02678 203 RKDVMAKCAQLAQFDEELYKVTGEGD---------------------------------DKYLIATSEQPLCAYHRGDWI 249 (448)
T ss_pred cHHHHhhcCCcccchhcCceecCCCC---------------------------------ceeeecccccccChHHhcccC
Confidence 99999999999999999999643322 036888999998888776655
Q ss_pred CCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCC----CCCCc
Q psy17941 211 SPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEIS----PRSGL 286 (679)
Q Consensus 211 ~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~----pr~Gl 286 (679)
+ | ++||++++++++|||+|++ ..+||
T Consensus 250 s-----------------------------~---------------------~eLPlr~~~~s~cfR~Eags~G~~~~GL 279 (448)
T PLN02678 250 D-----------------------------P---------------------KELPIRYAGYSTCFRKEAGSHGRDTLGI 279 (448)
T ss_pred C-----------------------------H---------------------HhCCceeEEeccccccccccCCCcCCcc
Confidence 4 3 7999999999999999987 36999
Q ss_pred ccccceeEeeEEEEeCCCc--chhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHH
Q psy17941 287 IRVREFTMAEIEHFCDPTD--KSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFM 364 (679)
Q Consensus 287 ~R~REF~q~e~~~F~~~~~--~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l 364 (679)
+|+|||+|+|+..||.|++ +. . . +..++...+.++
T Consensus 280 ~RvhqF~KvE~f~~~~pe~~~s~-~------------~------------------------------~e~~l~~~~~i~ 316 (448)
T PLN02678 280 FRVHQFEKVEQFCITSPNGNESW-E------------M------------------------------HEEMLKNSEDFY 316 (448)
T ss_pred eEEEEEEEEEEEEEECCCchhHH-H------------H------------------------------HHHHHHHHHHHH
Confidence 9999999999999999987 42 1 1 233566778888
Q ss_pred HHcCCCccchhhhhccCccccccccCccchhhhccC--CceeeeeccccchhhHhH
Q psy17941 365 ISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY--GWVECVGCADRSAYDLTQ 418 (679)
Q Consensus 365 ~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~~dl~~ 418 (679)
..+|++++.+. .++++|++.+..+||+|+|+|. +|.|+++|++++|||.+.
T Consensus 317 ~~L~lpyrvv~---~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRR 369 (448)
T PLN02678 317 QSLGIPYQVVS---IVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRR 369 (448)
T ss_pred HHcCCCeEEEe---ecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhc
Confidence 99999988765 4788999999999999999985 799999999999999874
No 30
>KOG1936|consensus
Probab=100.00 E-value=2.3e-34 Score=301.93 Aligned_cols=462 Identities=19% Similarity=0.231 Sum_probs=313.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhcCCCCCCCChHHHHHHHHHhccccchhhhcCC
Q psy17941 10 LAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKMEDLLKRRFFYDQSFSIYGG 89 (679)
Q Consensus 10 ~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~l~~r~~f~~~~~ei~~~ 89 (679)
+..++....-+++.++.|+.+++++..+.++++.+-+..+.+... ++. + ...|.. ..
T Consensus 6 ~~~~~~~~~~~~~llr~l~~~~a~~~~~~~~va~~~~~~~~~~~~------~~~-~----------~~k~~l------Kt 62 (518)
T KOG1936|consen 6 LVTTRESISFQGILLRDLKSSCASPEQISEEVALILALKNGLGRS------GSI-F----------KKKFSL------KT 62 (518)
T ss_pred HHHHHHHHhhhHHHHhhhhhccCChhHhhHHHHHHHHHhcccCCC------CCC-c----------Ccceee------cC
Confidence 566788889999999999999999999999999887766554210 110 0 111211 13
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLE 169 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~ 169 (679)
++|+.||.|..|+|++.|.+.+.+.| +++|+.+|+||+|+.++++.+ .++.-++.+| |+
T Consensus 63 PKGTrD~~p~qm~lRe~if~~i~~vF-krhGa~~iDTPVFElkeiL~g--KYGEdskLiY----------------dl-- 121 (518)
T KOG1936|consen 63 PKGTRDFSPEQMALREKIFSTIKEVF-KRHGAETIDTPVFELKEILTG--KYGEDSKLIY----------------DL-- 121 (518)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHH-HHcCCeeccccchhHHHHHhh--hcccccceeE----------------eh--
Confidence 79999999999999999999999999 999999999999999999953 3332222222 11
Q ss_pred HhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhh
Q psy17941 170 KLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQG 249 (679)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqg 249 (679)
.- .|+...-|||+.|-
T Consensus 122 ------------------------kD---------------------------------------QGGEl~SLRYDLTV- 137 (518)
T KOG1936|consen 122 ------------------------KD---------------------------------------QGGELCSLRYDLTV- 137 (518)
T ss_pred ------------------------hh---------------------------------------cCCcEEEeeccccc-
Confidence 00 13444467777774
Q ss_pred HHHHHHHhhhhccCCCCeeeecccccccCCCCC--CCCcccccceeEeeEEEEeC-----CCcchhhhHHHHHHHHHHHH
Q psy17941 250 IFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP--RSGLIRVREFTMAEIEHFCD-----PTDKSHAKFSDVETTQMMVL 322 (679)
Q Consensus 250 i~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p--r~Gl~R~REF~q~e~~~F~~-----~~~~~~~~~~~v~d~~~~~l 322 (679)
.|+|++.|| +---++.|||+.+||++ .| .+| |+|||+|+|+.+-+. |+..+- +-| . .+
T Consensus 138 ---PfARylAmN-ki~sikRy~iAkVyRRd-~P~mtrG--R~REFYQcDFDIAG~~d~M~pdaE~l---kiv----~-e~ 202 (518)
T KOG1936|consen 138 ---PFARYLAMN-KITSIKRYHIAKVYRRD-QPAMTRG--RYREFYQCDFDIAGQFDPMIPDAECL---KIV----V-EI 202 (518)
T ss_pred ---HHHHHHHHc-ccccceeeeEEEEEecc-Cchhhch--hhhhhhccCccccccCCCCCchHHHH---HHH----H-HH
Confidence 488999999 66789999999999999 88 567 999999999999773 333321 111 1 33
Q ss_pred HHHh------------------hccCCCCce-EEeecccccccccccccHHHHHHHHHHHHHHcCCCccchh-hhh--cc
Q psy17941 323 YSAC------------------NQMDGKPAE-RITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLR-FRQ--HM 380 (679)
Q Consensus 323 f~~~------------------~~~~g~~~~-~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~-~r~--~~ 380 (679)
|+++ .+++|.+.. |.+||.++++- +... |-....++..+-|++++... .-+ .+
T Consensus 203 L~~l~Igd~~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDKL----dK~p-wedVkkEmv~eKGlsee~ad~igeyv~~ 277 (518)
T KOG1936|consen 203 LSRLGIGDYGIKVNHRKILDGMFAVCGVPEDKFRTICSSIDKL----DKMP-WEDVKKEMVFEKGLSEEAADRIGEYVSL 277 (518)
T ss_pred HhhcCccceEEEecHHHHHHHHHHHhCCCHHHhhhHHHhhhhh----hcCC-HHHHHHHHHHhcCCCHHHHHHHHHHhhh
Confidence 4443 388999965 99999999664 2233 66666677777788766322 000 00
Q ss_pred Cc--c----c----ccccc-----CccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeeccc
Q psy17941 381 GN--E----M----AHYAC-----DCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPV 445 (679)
Q Consensus 381 ~~--e----~----~~ya~-----~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~ 445 (679)
.+ + | ..+.. ..-|+..++ .+.|..||+.|-.||++.++ |.+|+....|. .+...
T Consensus 278 ~g~~eL~e~l~~d~~l~~n~~a~eal~dlk~Lf--~y~~~fg~s~~isfDlSLAR---GLDYYTGvIyE------av~~~ 346 (518)
T KOG1936|consen 278 KGLDELLEKLIADPKLSQNEAAKEALADLKQLF--EYLEIFGISERISFDLSLAR---GLDYYTGVIYE------AVLRG 346 (518)
T ss_pred ccHHHHHHHHhcCCcccccHHHHHHHHHHHHHH--HHHHHcCCcceEEeehHHhc---cchhhhceeee------eeecc
Confidence 00 0 0 00110 011333333 35789999999999999876 55555432221 00000
Q ss_pred CcccccCccccchhhHHHHHhhhcCHhHHHHHHHhhhcCCcEEEee----cCceeeeccceeEEeeeecccceeEeccce
Q psy17941 446 LNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKYELLV----DDKEFVLTKDMISIKKSTKTFHVEEIIPSV 521 (679)
Q Consensus 446 ~~~~~~G~~~~~~~~~i~d~L~~~~~~~~~~~~~~l~~~g~~~~~~----~g~~f~i~~~~v~~~~y~~~~~~~~~~P~v 521 (679)
....++.-. .+.+. + +.-+++ .|++|+.-..|+.-+ ...+|.|
T Consensus 347 --~~~~~~a~~------~~~~~--~---------------~e~~~vGSvaaGGRYDnLv~mf~~k--------~~~vPcv 393 (518)
T KOG1936|consen 347 --LRLICPAGR------YDQAG--S---------------TEPGGVGSVAAGGRYDNLVGMFDKK--------GDKVPCV 393 (518)
T ss_pred --ccccCcchh------hhccc--c---------------ccCCCccccccCcchhhHHHHhccc--------cCcCCcc
Confidence 001111000 00000 0 001111 266777665554311 2347866
Q ss_pred eeccccHHHHHHHHHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEe-CCCCC
Q psy17941 522 IEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVD-DSGGS 600 (679)
Q Consensus 522 i~~s~GIeRll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D-~~~~s 600 (679)
+.|+|++||+..|.+. ....+ ..+- -+..+|+|...+.+ +.....++.+.||.+||.+++- ..+.+
T Consensus 394 -G~S~GVeRiFsile~r-~~~~~-------~~iR--~t~t~V~V~~~~k~--~l~eR~k~v~~Lw~agI~aE~~yk~~~~ 460 (518)
T KOG1936|consen 394 -GQSVGVERIFSILEQR-AATVA-------TKIR--TTETQVYVAAAGKN--LLFERLKVVNALWDAGIKAEYLYKANPK 460 (518)
T ss_pred -ceeehHhHHHHHHHHH-HHhhh-------hccc--cCceEEEEEecCCc--hHHHHHHHHHHHHhcCcchhhhhhcCcc
Confidence 7899999999766543 22111 1111 14568888877665 7888999999999999999966 45889
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 601 IGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 601 lgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
+-+|+.+|++.|||++||||++|+ .+|.|+||+..|++.+.++.++++..|+++++
T Consensus 461 ~~~q~~~~e~~~ip~~vi~Ge~El-~~G~V~vk~~~~re~~~v~~e~~v~~l~~~l~ 516 (518)
T KOG1936|consen 461 LLKQFQYAEEAGIPLAVILGEEEL-ADGSVKVKNVGTREEVLVKREQFVSELKDLLS 516 (518)
T ss_pred HHHHHHHHHhcCCCeEEEechhhh-cCCeEEEEecccccceeccHHHHHHHHHHHhc
Confidence 999999999999999999999999 79999999999999999999999999988765
No 31
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=5.8e-34 Score=320.57 Aligned_cols=380 Identities=19% Similarity=0.224 Sum_probs=247.0
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc-CCcccccCCceeeCCCCcccchhhhHHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS-GHVDRFADLMVKDLKTGECFRLDHLIKAH 167 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S-Gh~~~f~d~m~~d~~~~~~~r~d~l~~~~ 167 (679)
.++|+.||+|..+.+++.|++.+++.| ..+||.+|+||+|++.++|.++ |. ...+.||+....
T Consensus 72 ~p~G~~D~lp~~~~~~~~i~~~~~~~~-~~~Gy~~I~tP~lE~~el~~~~~g~--~~~~~~y~f~D~------------- 135 (487)
T PLN02530 72 PPKGTRDFPPEDMRLRNWLFDHFREVS-RLFGFEEVDAPVLESEELYIRKAGE--EITDQLYNFEDK------------- 135 (487)
T ss_pred CCCCcCcCCHHHHHHHHHHHHHHHHHH-HHcCCEeccccccchHHHhccccCc--ccccceEEEECC-------------
Confidence 379999999999999999999999999 9999999999999999999864 42 233445542110
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccch
Q psy17941 168 LEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETA 247 (679)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~a 247 (679)
+++...||||.|
T Consensus 136 --------------------------------------------------------------------~g~~l~LRpD~T 147 (487)
T PLN02530 136 --------------------------------------------------------------------GGRRVALRPELT 147 (487)
T ss_pred --------------------------------------------------------------------CCCEEecCCCCc
Confidence 234568999999
Q ss_pred hhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHH----HHH
Q psy17941 248 QGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMM----VLY 323 (679)
Q Consensus 248 qgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~----~lf 323 (679)
.++.|.+..... ...+|+++|++|+|||+| +|+.| |.|||+|+++|+|+.+...+ |+|++ .+|
T Consensus 148 ~~iaR~~~~~~~--~~~~P~r~~y~g~vfR~e-~~q~g--r~REf~Q~giEiiG~~~~~a--------DaEvi~l~~~~l 214 (487)
T PLN02530 148 PSLARLVLQKGK--SLSLPLKWFAIGQCWRYE-RMTRG--RRREHYQWNMDIIGVPGVEA--------EAELLAAIVTFF 214 (487)
T ss_pred HHHHHHHHhccc--ccCCCeEEEEEcCEEcCc-CCCCC--CccceEEcCeeEeCCCCcch--------hHHHHHHHHHHH
Confidence 999999876431 235899999999999999 89999 99999999999999877543 44441 222
Q ss_pred HHhhccCCCCce-EEeecccccccccccccHHHHHHHHHHHHHHcCCCccchh-hhhccCccccccccCccchhhhccCC
Q psy17941 324 SACNQMDGKPAE-RITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLR-FRQHMGNEMAHYACDCWDAECLTSYG 401 (679)
Q Consensus 324 ~~~~~~~g~~~~-~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~-~r~~~~~e~~~ya~~~~d~e~~~~~g 401 (679)
.. +|-...+ .+.+++ ......++..++++..... ....+ +.+ ... +.+
T Consensus 215 ~~---lgl~~~~~~i~i~~---------------~~i~~~~l~~~~~~~~~~~~v~~~~-d~l---~k~--~~~------ 264 (487)
T PLN02530 215 KR---VGITSSDVGIKVSS---------------RKVLQAVLKSYGIPEESFAPVCVIV-DKL---EKL--PRE------ 264 (487)
T ss_pred HH---cCCCCCceEEEEcC---------------HHHHHHHHHHcCCchhhHHHHHHHH-Hhh---hhc--cHH------
Confidence 22 2211111 233332 2223344455565543210 00000 000 000 000
Q ss_pred ceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhc--CHhHHHHHHH
Q psy17941 402 WVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAAL--DLNSVSAVEE 479 (679)
Q Consensus 402 ~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~--~~~~~~~~~~ 479 (679)
.+.......+.+ .+........ ++ + +.++.+.+.++.. .-++++.+-+
T Consensus 265 -------------~l~~~L~~~~~~--------~~~~~~l~~l-~~-------~-~~~~~l~~~~~~~~~~l~~L~~l~~ 314 (487)
T PLN02530 265 -------------EIEKELDTLGVS--------EEAIEGILDV-LS-------L-KSLDDLEALLGADSEAVADLKQLFS 314 (487)
T ss_pred -------------HHHHHHHHcCCC--------HHHHHHHHHH-Hh-------c-cCHHHHHHHhhhhHHHHHHHHHHHH
Confidence 000000000000 0000000000 00 0 0112233332210 1112233333
Q ss_pred hhhcCCcEEEeecCceeeeccceeE-Eeeeecccc--------------eeEe-----------ccceeeccccHHHHHH
Q psy17941 480 SLNTNGKYELLVDDKEFVLTKDMIS-IKKSTKTFH--------------VEEI-----------IPSVIEPSFGIGRIMY 533 (679)
Q Consensus 480 ~l~~~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~--------------~~~~-----------~P~vi~~s~GIeRll~ 533 (679)
.+...| + ...+.+++.+++ ++|||..++ |++| .|+| |+|+|++|++.
T Consensus 315 ~l~~~g-----~-~~~i~~Dl~lvrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg~~~pAv-GFa~g~~~l~~ 387 (487)
T PLN02530 315 LAEAYG-----Y-QDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGEDTPAC-GFGFGDAVIVE 387 (487)
T ss_pred HHHHcC-----C-CccEEEecccccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCCCCCCee-EEEEhHHHHHH
Confidence 333222 1 123667778888 788877665 4455 5766 78999999987
Q ss_pred HHHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCC
Q psy17941 534 ALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAI 613 (679)
Q Consensus 534 al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gi 613 (679)
++.+. ..+|.|.+|.+|+|++++++ ...+|.++++.||++|++|++|..+.++++++++|++.|+
T Consensus 388 ~l~~~-------------g~~p~~~~~~dVlVi~~~~~--~~~~A~~ia~~LR~~Gi~vevd~~~~~l~k~ik~A~k~g~ 452 (487)
T PLN02530 388 LLKEK-------------GLLPELPHQVDDVVFALDED--LQGAAAGVASRLREKGRSVDLVLEPKKLKWVFKHAERIGA 452 (487)
T ss_pred HHHhc-------------CCCCCCCCCCcEEEEEcChH--HHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHCCC
Confidence 65443 23566678899999998754 7789999999999999999999888899999999999999
Q ss_pred CEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHH
Q psy17941 614 PFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEV 648 (679)
Q Consensus 614 p~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el 648 (679)
||+|+||++|+ ++++|+||++.+++|..++++++
T Consensus 453 ~~iviiG~~E~-~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 453 KRLVLVGASEW-ERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred CEEEEEchhHH-hCCeEEEEECCCCcceEechHHc
Confidence 99999999999 79999999999999999998764
No 32
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=1.7e-34 Score=305.62 Aligned_cols=217 Identities=16% Similarity=0.238 Sum_probs=180.6
Q ss_pred HHHHHHHHHhcccc--chhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCccccc
Q psy17941 68 AKMEDLLKRRFFYD--QSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFA 145 (679)
Q Consensus 68 ~~~~~l~~r~~f~~--~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~ 145 (679)
..+.+++++.+++. +...+ .++|+|.|+|.|++|+++|++++++.+ .+.|+++|.+|.|.+.++|++||||+.|.
T Consensus 19 ~~H~~i~~~~~l~d~~~~~~~--~G~g~~~~~p~g~~l~~~l~~~~~~~~-~~~G~~ev~~P~l~~~~l~~~sg~~~~~~ 95 (297)
T cd00770 19 KDHVELGEKLDILDFERGAKV--SGSRFYYLKGDGALLERALINFALDFL-TKRGFTPVIPPFLVRKEVMEGTGQLPKFD 95 (297)
T ss_pred CCHHHHHHHCCCccchhhccc--CCCceeEECCHHHHHHHHHHHHHHHHH-HHCCCEEEECcccccHHHHhhcCcCccCh
Confidence 34677898888763 22222 367899999999999999999999999 88999999999999999999999999999
Q ss_pred CCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhh
Q psy17941 146 DLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFN 225 (679)
Q Consensus 146 d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fn 225 (679)
++||+... .+ ++|.||+|+.++.+.+..+.|
T Consensus 96 ~~~f~v~~-~~----------------------------------~~L~pt~e~~~~~l~~~~~~s-------------- 126 (297)
T cd00770 96 EQLYKVEG-ED----------------------------------LYLIATAEVPLAALHRDEILE-------------- 126 (297)
T ss_pred hcccEecC-CC----------------------------------EEEeecCCHHHHHHHhcccCC--------------
Confidence 99998532 11 589999999999888766655
Q ss_pred hhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCC----CCcccccceeEeeEEEEe
Q psy17941 226 LMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPR----SGLIRVREFTMAEIEHFC 301 (679)
Q Consensus 226 lmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr----~Gl~R~REF~q~e~~~F~ 301 (679)
| ++||++++|+|+|||+|++|+ +||+|+|||+|.|+++||
T Consensus 127 ---------------~---------------------~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~ 170 (297)
T cd00770 127 ---------------E---------------------EELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFT 170 (297)
T ss_pred ---------------H---------------------hhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEE
Confidence 4 899999999999999999986 899999999999999999
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccC
Q psy17941 302 DPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMG 381 (679)
Q Consensus 302 ~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~ 381 (679)
.|+++. ..|.. ++.....++..+|++...+. ..+
T Consensus 171 ~~e~~~-~~~~~------------------------------------------~l~~~~~i~~~lgl~~~~~~---~~~ 204 (297)
T cd00770 171 KPEESW-EELEE------------------------------------------LISNAEEILQELGLPYRVVN---ICT 204 (297)
T ss_pred CchHHH-HHHHH------------------------------------------HHHHHHHHHHHcCCcEEEEE---ccC
Confidence 996553 22222 34445667788999866544 456
Q ss_pred ccccccccCccchhhhccC--CceeeeeccccchhhHhH
Q psy17941 382 NEMAHYACDCWDAECLTSY--GWVECVGCADRSAYDLTQ 418 (679)
Q Consensus 382 ~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~~dl~~ 418 (679)
++|++++..++|+|.|+|. +|.|+.+|++++||+++.
T Consensus 205 ~dl~~~~~~~~d~e~~~p~~~~~~e~~s~s~~~d~~s~r 243 (297)
T cd00770 205 GDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARR 243 (297)
T ss_pred ccccCchhhheeeheecCCCCCeEEEEEccCccChhhhh
Confidence 7899999999999999974 699999999999999764
No 33
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.6e-33 Score=308.98 Aligned_cols=373 Identities=21% Similarity=0.264 Sum_probs=242.9
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc-CCcc-cccCCceeeCCCCcccchhhhHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS-GHVD-RFADLMVKDLKTGECFRLDHLIKA 166 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S-Gh~~-~f~d~m~~d~~~~~~~r~d~l~~~ 166 (679)
.++|++||+|.++.+++.|++.+++.| .++||.||.||+|++.++|..+ |++. .+.+.||+....
T Consensus 6 ~p~G~~d~~p~~~~~~~~i~~~i~~~~-~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~------------ 72 (412)
T PRK00037 6 APRGTRDILPEESAKWQYVEDTIREVF-ERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDK------------ 72 (412)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHH-HHcCCeEeeccccchHHHhccccCcccccccceeEEEEcC------------
Confidence 379999999999999999999999999 9999999999999999999875 7763 235666652111
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccc
Q psy17941 167 HLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPET 246 (679)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~ 246 (679)
+++...|||++
T Consensus 73 ---------------------------------------------------------------------~g~~l~LRpd~ 83 (412)
T PRK00037 73 ---------------------------------------------------------------------GGRSLTLRPEG 83 (412)
T ss_pred ---------------------------------------------------------------------CCCEEEecCCC
Confidence 12245899999
Q ss_pred hhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHh
Q psy17941 247 AQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSAC 326 (679)
Q Consensus 247 aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~ 326 (679)
|..+.+.+.+. ..+|+++|++|++||+| .|..| |.|||+|+++|+|+.++..+ |+++
T Consensus 84 T~~~ar~~~~~-----~~~p~r~~~~g~vfR~e-~~~~g--r~ref~Q~g~ei~g~~~~~~--------d~E~------- 140 (412)
T PRK00037 84 TAPVVRAVIEH-----KLQPFKLYYIGPMFRYE-RPQKG--RYRQFHQFGVEVIGSDSPLA--------DAEV------- 140 (412)
T ss_pred cHHHHHHHHhC-----CCCCeEEEEEcCccccC-CCCCC--cccceEEcCeeeeCCCCcch--------hHHH-------
Confidence 99999888754 23999999999999999 77777 99999999999999886532 3333
Q ss_pred hccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccc---hhhhccCCce
Q psy17941 327 NQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWD---AECLTSYGWV 403 (679)
Q Consensus 327 ~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d---~e~~~~~g~~ 403 (679)
+..+.+++..+|++.-.+... .+..+....-+ ++.....+..
T Consensus 141 ------------------------------i~~~~~~l~~lg~~~~~~~l~-----~~~~~~~~~~~~~~l~~~l~~~~~ 185 (412)
T PRK00037 141 ------------------------------IALAADILKALGLKGLKLLIN-----SLGDFEIRANYRKALVGFLEKGLD 185 (412)
T ss_pred ------------------------------HHHHHHHHHHcCCCceeeeec-----cCCCHHHhHHHHHHHHHHHHhCch
Confidence 111223344444432111000 00000000000 0000000000
Q ss_pred eeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccC-ccccchhhHHHHHhhhcCHhHHHHHHHhhh
Q psy17941 404 ECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIG-KEFKKDAKTICDALAALDLNSVSAVEESLN 482 (679)
Q Consensus 404 e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G-~~~~~~~~~i~d~L~~~~~~~~~~~~~~l~ 482 (679)
++ . +...+. .....+.. +++...| ..+...++.+.+++.......+..+...++
T Consensus 186 ~l---~-----~~~~~~-~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 240 (412)
T PRK00037 186 EL---D-----EDSKRR-LETNPLRI----------------LDKKDKEDQELLKDAPKLLDYLDEESKEHFEELKELLD 240 (412)
T ss_pred hh---c-----hHHHHH-HhhCchhh----------------hcccchhhHHHHhcchHHHHHhhHHHHHHHHHHHHHHH
Confidence 00 0 000000 00000000 0000001 111112233444433222233445555554
Q ss_pred cCCcEEEeecCceeeeccceeE-Eeeeecccc---------------eeEe-----------ccceeeccccHHHHHHHH
Q psy17941 483 TNGKYELLVDDKEFVLTKDMIS-IKKSTKTFH---------------VEEI-----------IPSVIEPSFGIGRIMYAL 535 (679)
Q Consensus 483 ~~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~---------------~~~~-----------~P~vi~~s~GIeRll~al 535 (679)
..| .++.+++.+++ ++|||..++ |++| .|+| ++|+|++||+.++
T Consensus 241 ~~~--------~~i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pav-Gfs~~le~l~~~l 311 (412)
T PRK00037 241 ALG--------IPYVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGPPTPAV-GFAIGVERLLLLL 311 (412)
T ss_pred HcC--------CCEEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHHHhCCCCCceE-EEEEcHHHHHHHH
Confidence 333 13444555555 455544432 3344 4666 7999999999877
Q ss_pred HHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCE
Q psy17941 536 FEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPF 615 (679)
Q Consensus 536 ~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~ 615 (679)
.++. + +|.+|.|+|++.+ ...++.++++.||++|++|++|..+.++++++++|++.|+|+
T Consensus 312 ~~~~--------------~----~~~~vlI~~~~~~--~~~~a~~i~~~Lr~~Gi~v~i~~~~~~~~~~~~~a~~~gi~~ 371 (412)
T PRK00037 312 EELG--------------E----EPVDVYVVPLGED--AELAALKLAEKLRAAGIRVELDYGGRKLKKQFKYADKSGARF 371 (412)
T ss_pred HhcC--------------C----CCCCEEEEEeChH--HHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHcCCCE
Confidence 6642 1 6889999998743 567899999999999999999988889999999999999999
Q ss_pred EEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHH
Q psy17941 616 GITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLS 656 (679)
Q Consensus 616 ~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~ 656 (679)
+|+||++++ ++|+|+||++++++|..++++++++.|.+++
T Consensus 372 ~viig~~e~-~~~~v~vr~~~~~~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 372 VLILGEDEL-ANGTVTVKDLRTGEQQTVPLDELVEALKELL 411 (412)
T ss_pred EEEEChhHH-hCCeEEEEECCCCceEEeeHHHHHHHHHHhh
Confidence 999999999 7999999999999999999999999888654
No 34
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-33 Score=301.40 Aligned_cols=282 Identities=17% Similarity=0.195 Sum_probs=240.3
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHhhHHHhhc--------------CCCCCCCChHH
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEGA-PELDVKKAVAELKLRKKVLDERELKL--------------APFVSSFDRAK 69 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~~-~~~~i~~~v~~l~~~~~~le~~~~~~--------------~~~~~~~~~~~ 69 (679)
..+.++++|++++|+.|++|++.++.+. ....+.++++.|+++++.++.++.++ ..+++|++.++
T Consensus 40 ~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~VPvg~de 119 (429)
T COG0172 40 KLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHESVPVGKDE 119 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCccccCcCCCc
Confidence 4678899999999999999996555554 57789999999999999887763321 22589999888
Q ss_pred HHHHHHHh-ccc---------cchhhh---cC----------CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeec
Q psy17941 70 MEDLLKRR-FFY---------DQSFSI---YG----------GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDC 126 (679)
Q Consensus 70 ~~~l~~r~-~f~---------~~~~ei---~~----------~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~ 126 (679)
.++...++ |-. .+|+++ .| .++|+|.|.+.|++|.++|.+++.+.+ .++||.++.+
T Consensus 120 ~~n~~vr~~g~~~~~~~~f~pk~H~~lge~l~~~Df~~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~~-~~~Gf~e~~~ 198 (429)
T COG0172 120 DDNVEVRRWGEPPVFVFDFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDLH-TKHGFTEVLP 198 (429)
T ss_pred ccceEEEEEecCccccccCCcchHHHHhhhcCcchhhhhcccCCCceEEEcCHHHHHHHHHHHHHHHHH-HHcCceEeeC
Confidence 88866553 332 245544 11 489999999999999999999999999 5999999999
Q ss_pred CcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHh
Q psy17941 127 SILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKK 206 (679)
Q Consensus 127 P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~ 206 (679)
|.|.+.+++.++|++++|.|.||+...++ ++|.||+|+.++.+++
T Consensus 199 P~lv~~e~m~gtgqlpkf~e~~y~v~~~~-----------------------------------~~LipTaEvpl~~l~~ 243 (429)
T COG0172 199 PYLVNLESMFGTGQLPKFEEDLYKVEDPD-----------------------------------LYLIPTAEVPLTNLHR 243 (429)
T ss_pred ceeecHHHhhccCCCCCCcccceEecCCC-----------------------------------EEEEecchhhhHHhhc
Confidence 99999999999999999999999965542 4899999999999999
Q ss_pred cCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCC----
Q psy17941 207 YNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP---- 282 (679)
Q Consensus 207 ~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p---- 282 (679)
.+|... .+||++++.+++|||.|+++
T Consensus 244 ~Eil~~--------------------------------------------------~~LP~k~~~~S~cFR~EAGs~Grd 273 (429)
T COG0172 244 DEILDE--------------------------------------------------EDLPIKYTAYSPCFRSEAGSAGKD 273 (429)
T ss_pred cccccc--------------------------------------------------ccCCeeeEEEChhhhccccccccc
Confidence 887652 78999999999999999988
Q ss_pred CCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHH
Q psy17941 283 RSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQK 362 (679)
Q Consensus 283 r~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~ 362 (679)
.+||+|+|||++.|+..||.|+++.. .+...++.++.
T Consensus 274 trGliRvHQF~KVE~v~~~~Pe~S~~-------------------------------------------~~E~m~~~ae~ 310 (429)
T COG0172 274 TRGLIRVHQFDKVELVVITKPEESEE-------------------------------------------ELEEMLGNAEE 310 (429)
T ss_pred ccceeeeeeeeeEEEEEEeCcchhHH-------------------------------------------HHHHHHHHHHH
Confidence 79999999999999999999998752 13335778899
Q ss_pred HHHHcCCCccchhhhhccCccccccccCccchhhhccC--CceeeeeccccchhhHhH
Q psy17941 363 FMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY--GWVECVGCADRSAYDLTQ 418 (679)
Q Consensus 363 ~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~~dl~~ 418 (679)
++..|++|+..+. .|+++|.+.+..+||+|+|+|. .|.|+++|++++|||.+.
T Consensus 311 il~~LeLPyRvv~---lctGDlgf~a~kkYDlEvWlP~q~~yrEisScSnc~DfQaRR 365 (429)
T COG0172 311 VLQELELPYRVVN---LCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNCTDFQARR 365 (429)
T ss_pred HHHHhCCCceEee---eccCCcCCcccCceeEEEEecCCCCceeeeeeeccccHHHHH
Confidence 9999999999876 4889999999999999999996 699999999999999875
No 35
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=4.6e-33 Score=295.03 Aligned_cols=291 Identities=21% Similarity=0.226 Sum_probs=211.0
Q ss_pred HHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceee
Q psy17941 72 DLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKD 151 (679)
Q Consensus 72 ~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d 151 (679)
++.++.+++.... +.++|+++|+|.|++++++|++++++.+ ...||.+|.||+|.+.++|++|||++.|.++||+.
T Consensus 4 ~l~~~~~l~~~~~---~~~~G~~~~~p~g~~l~~~l~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~ 79 (298)
T cd00771 4 RLGGELELFFFFD---EAGPGLPFWLPKGAIIRNELEDFLRELQ-RKRGYQEVETPIIYNKELWETSGHWDHYRENMFPF 79 (298)
T ss_pred HHHHHcCCcccCC---CCCCcceEEcccHHHHHHHHHHHHHHHH-HHcCCEEEECCeecCHHHHhhCCCccccccCceEe
Confidence 4666655542111 1379999999999999999999999999 89999999999999999999999999999999985
Q ss_pred CCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcc
Q psy17941 152 LKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQ 231 (679)
Q Consensus 152 ~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ 231 (679)
..++
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (298)
T cd00771 80 EEED---------------------------------------------------------------------------- 83 (298)
T ss_pred ccCC----------------------------------------------------------------------------
Confidence 3321
Q ss_pred cCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCC-CCCcccccceeEeeEEEEeCCCcchhhh
Q psy17941 232 IGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP-RSGLIRVREFTMAEIEHFCDPTDKSHAK 310 (679)
Q Consensus 232 ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p-r~Gl~R~REF~q~e~~~F~~~~~~~~~~ 310 (679)
...+|||++++++++.|++... +.++||++++|+|+|||+|.++ .+||+|+|||+|.|+|+||.+++...
T Consensus 84 ------~~l~LRP~~~~~~~~~~~~~~~-s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~-- 154 (298)
T cd00771 84 ------EEYGLKPMNCPGHCLIFKSKPR-SYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKE-- 154 (298)
T ss_pred ------ceEEEcccCCHHHHHHHHhhcc-chhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHH--
Confidence 1348999999999998886543 2368999999999999999876 79999999999999999999876431
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccC
Q psy17941 311 FSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACD 390 (679)
Q Consensus 311 ~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~ 390 (679)
+ ....++.+..++..+|++...+.+... . ...
T Consensus 155 -------e----------------------------------~~e~l~~~~~~l~~lgl~~~~i~l~~~---~----~~~ 186 (298)
T cd00771 155 -------E----------------------------------IKGVLDLIKEVYSDFGFFDYKVELSTR---P----EKF 186 (298)
T ss_pred -------H----------------------------------HHHHHHHHHHHHHHcCCCcEEEEEEcC---h----hHh
Confidence 1 111345566778889987655543221 1 112
Q ss_pred ccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhcC
Q psy17941 391 CWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALD 470 (679)
Q Consensus 391 ~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~ 470 (679)
..|.|.|.+. .-.+......++.++. ....+++|+||++.. .+.|++++.-
T Consensus 187 ~~d~e~W~~a------------~~~l~e~l~~~~~~~~--------------~~~g~~afygpkid~---~~~d~~gr~~ 237 (298)
T cd00771 187 IGSDEVWEKA------------EAALREALEEIGLPYE--------------INEGEGAFYGPKIDF---HVKDALGREW 237 (298)
T ss_pred cCCHHHHHHH------------HHHHHHHHHhCCCCce--------------ECCCCcccccceEEE---EEEeCCCCee
Confidence 3456665432 1123444444555433 224778999998764 3456555422
Q ss_pred HhHHHHHHHhhhcCCcEEEeec-CceeeeccceeEEeeeecccceeEeccceeecc-cc-HHHHHHHHHHhccccCCCcc
Q psy17941 471 LNSVSAVEESLNTNGKYELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPS-FG-IGRIMYALFEHNFKMRDGDE 547 (679)
Q Consensus 471 ~~~~~~~~~~l~~~g~~~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s-~G-IeRll~al~e~~~~~~~~~~ 547 (679)
++|+++++.+ +++|+++ |+.. ++....|.|++.+ +| +||+|++|+|++.
T Consensus 238 ------------q~~t~qld~~~~~~f~l~--------y~~~-~~~~~~pv~ih~~~~Gs~eR~i~~l~e~~~------- 289 (298)
T cd00771 238 ------------QCSTIQLDFNLPERFDLT--------YIGE-DGEKKRPVMIHRAILGSIERFIGILIEHYA------- 289 (298)
T ss_pred ------------ecceeEeeccChhhcCCE--------EEcc-CCCccCCEEEEeCCCCcHHHHHHHHHHhhC-------
Confidence 4677777665 7888876 5543 2344478888766 77 8899999999864
Q ss_pred ccccccCCCCCCC
Q psy17941 548 QRTYLALPPLVAP 560 (679)
Q Consensus 548 ~r~~l~~P~~laP 560 (679)
+.||.|+||
T Consensus 290 ----g~~P~wlaP 298 (298)
T cd00771 290 ----GKFPLWLAP 298 (298)
T ss_pred ----CCCCCccCc
Confidence 589999998
No 36
>PLN02320 seryl-tRNA synthetase
Probab=100.00 E-value=1.3e-32 Score=303.63 Aligned_cols=282 Identities=15% Similarity=0.163 Sum_probs=220.6
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhc--------------CCCCCCCChHHH
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKL--------------APFVSSFDRAKM 70 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~--------------~~~~~~~~~~~~ 70 (679)
..+.++++|++++|+.+++|++ ++.+.+.++++++++.|+++++.|+++..++ .-+++|+|.++.
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~G~de~ 182 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGEDS 182 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCC
Confidence 4678899999999999999998 6667788899999999999999988873321 226788877664
Q ss_pred HHHHHHhc----c---ccchhhh------c----C-CCCccee-eCcchHH-HHHHHHHHHHHHHhhhhCceEeecCccc
Q psy17941 71 EDLLKRRF----F---YDQSFSI------Y----G-GISGQYD-FGPMGCA-LKTNMLSAWRQFFVLEEQMLEVDCSILT 130 (679)
Q Consensus 71 ~~l~~r~~----f---~~~~~ei------~----~-~~~G~~d-~~P~G~~-l~~~i~~~~r~~~~~~~g~~ev~~P~l~ 130 (679)
+.++++.| | ..+|.+| + | -++|... |+|.|.+ |.++|++++++.+ .+.||++|.+|.|.
T Consensus 183 ~~~~~~~G~~~~f~f~~rdH~eLg~~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f~ld~~-~~~Gy~eV~tP~lv 261 (502)
T PLN02320 183 SAVRKEVGSPREFSFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEV-MKKGFTPLTTPEIV 261 (502)
T ss_pred CeEEEecCCCCCCCCCCcCHHHHHHHcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHHHHHHH-HHcCCEEEECCccc
Confidence 43333322 2 1345544 1 1 2456666 4666555 6699999999998 77899999999999
Q ss_pred chhhhhhcCCcccccC-CceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCC
Q psy17941 131 LEPVLKASGHVDRFAD-LMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNI 209 (679)
Q Consensus 131 ~~~v~~~SGh~~~f~d-~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i 209 (679)
..++|++|||+++|.+ .+|+...+ + +++.||+|...+.++...+
T Consensus 262 ~~~l~~~sG~~p~~e~~~~y~ie~e-d----------------------------------~~Li~TaE~Pl~~~~~~~i 306 (502)
T PLN02320 262 RSSVVEKCGFQPRGDNTQVYSIDGS-D----------------------------------QCLIGTAEIPVGGIHMDSI 306 (502)
T ss_pred hHHHHHhcCCCcccccCceeEECCC-c----------------------------------eEEeecccccccccccccc
Confidence 9999999999999877 67664221 1 4788999876655444333
Q ss_pred CCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCC--C--CCC
Q psy17941 210 KSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEIS--P--RSG 285 (679)
Q Consensus 210 ~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~--p--r~G 285 (679)
.+ | ++||++++.+|+|||+|++ + .+|
T Consensus 307 ls-----------------------------~---------------------~dLPlRy~~~s~cFR~EAgs~G~d~rG 336 (502)
T PLN02320 307 LL-----------------------------E---------------------SALPLKYVAFSHCFRTEAGAAGAATRG 336 (502)
T ss_pred cC-----------------------------H---------------------hhCCceeEEeccccccccccCCCcCCC
Confidence 32 3 8999999999999999998 4 589
Q ss_pred cccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHH
Q psy17941 286 LIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMI 365 (679)
Q Consensus 286 l~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~ 365 (679)
|+|+|||+++|++.||.|+++.. . +...+..++.++.
T Consensus 337 L~RvhQF~KvE~~if~~peqs~~-------------e------------------------------~e~ll~~~e~i~~ 373 (502)
T PLN02320 337 LYRVHQFSKVEMFVICRPEESES-------------F------------------------------HEELIQIEEDLFT 373 (502)
T ss_pred ceeeeeeecccEEEEECHHHHHH-------------H------------------------------HHHHHHHHHHHHH
Confidence 99999999999999999987631 1 2235677889999
Q ss_pred HcCCCccchhhhhccCccccccccCccchhhhccC--CceeeeeccccchhhHhHH
Q psy17941 366 SVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY--GWVECVGCADRSAYDLTQH 419 (679)
Q Consensus 366 ~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~~dl~~~ 419 (679)
.+|+++..+. .++++|++.+..+||+|+|+|. .|+|+++|++++|||.+..
T Consensus 374 ~LgLpyrvv~---l~tgDLg~~a~kkyDiEvW~P~~~~y~EvsS~SNc~DfQaRRl 426 (502)
T PLN02320 374 SLGLHFKTLD---MATADLGAPAYRKFDIEAWMPGLGRYGEISSASNCTDYQSRRL 426 (502)
T ss_pred HcCCCeEEEE---ecCCccchhhhheEEEEEEecCCCcEEEEeeecchhhHhhhcc
Confidence 9999988776 3678999999999999999995 6999999999999998753
No 37
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=1.8e-31 Score=305.71 Aligned_cols=387 Identities=17% Similarity=0.222 Sum_probs=246.1
Q ss_pred CCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc-CCcccccCCceeeCCCCcccchhhhHHH
Q psy17941 88 GGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS-GHVDRFADLMVKDLKTGECFRLDHLIKA 166 (679)
Q Consensus 88 ~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S-Gh~~~f~d~m~~d~~~~~~~r~d~l~~~ 166 (679)
..++|+.||+|.-+.+++.|++.+++.| .++||.+|+||+|++.++|.+. |.- ...||+...
T Consensus 328 k~PkGtrD~lP~e~~~re~I~~~L~~vF-k~hGy~eI~TPvfE~~Ell~~k~Ged---~k~mY~f~D------------- 390 (763)
T PLN02972 328 KIPKGTRDFAKEQMAIREKAFSIITSVF-KRHGATALDTPVFELRETLMGKYGED---SKLIYDLAD------------- 390 (763)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHH-HHcCCEEccCCcccchHHhhcccCcc---hhheEEEEC-------------
Confidence 3589999999999999999999999999 9999999999999999999752 321 233443211
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccc
Q psy17941 167 HLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPET 246 (679)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~ 246 (679)
.|++...||||.
T Consensus 391 --------------------------------------------------------------------~gGr~LaLRPDl 402 (763)
T PLN02972 391 --------------------------------------------------------------------QGGELCSLRYDL 402 (763)
T ss_pred --------------------------------------------------------------------CCCCEEEeCCCC
Confidence 023456899999
Q ss_pred hhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHH-
Q psy17941 247 AQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSA- 325 (679)
Q Consensus 247 aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~- 325 (679)
|.++.|.+..+ ...|+++|++|++||+| +|+.| |.|||+|+++++|+..+... .|+|++.+...
T Consensus 403 TvPiAR~vA~n-----~~~p~KrYyiG~VFR~e-~pqkG--R~REF~Q~G~EIIG~~~~~~-------aDAEVI~La~E~ 467 (763)
T PLN02972 403 TVPFARYVAMN-----GITSFKRYQIAKVYRRD-NPSKG--RYREFYQCDFDIAGVYEPMG-------PDFEIIKVLTEL 467 (763)
T ss_pred hHHHHHHHHhC-----CCCcceEEEeccEEecC-CCCCC--CCccceEEeEEEEcCCCcch-------hhHHHHHHHHHH
Confidence 99999877653 23599999999999999 89999 99999999999999643321 24444111111
Q ss_pred hhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccCCcee-
Q psy17941 326 CNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVE- 404 (679)
Q Consensus 326 ~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e- 404 (679)
+.++| .....+.+++ ......++..+|++.+..+ ..+. +-+..|. .+|.+
T Consensus 468 L~~LG-i~df~I~INh---------------~~iL~~ILe~lgi~~e~~~--~v~~------aIdkldk-----~~le~v 518 (763)
T PLN02972 468 LDELD-IGTYEVKLNH---------------RKLLDGMLEICGVPPEKFR--TICS------SIDKLDK-----QSFEQV 518 (763)
T ss_pred HHhCC-CCceEEEeCC---------------HHHHHHHHHHcCCCHHHHH--HHHH------HHHHhhh-----hhHHHH
Confidence 11222 1112233332 2223445556677654321 1000 0000000 01100
Q ss_pred ---e---eeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhc---------
Q psy17941 405 ---C---VGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAAL--------- 469 (679)
Q Consensus 405 ---~---~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~--------- 469 (679)
+ .|+..-..-.+...-...|. | ..+++.+...
T Consensus 519 k~eL~~~~gLs~e~~~~L~~L~~L~G~----------~-----------------------~evLd~L~~~~~~l~~~~~ 565 (763)
T PLN02972 519 KKEMVEEKGLSNETADKIGNFVKERGP----------P-----------------------LELLSKLRQEGSEFLGNAS 565 (763)
T ss_pred HHHHhhhcCCCHHHHHHHHHHHHhcCC----------H-----------------------HHHHHHHHHhhHhhccChH
Confidence 0 00000000000000000000 0 0111111100
Q ss_pred CHhHHHHHH---HhhhcCCcEEEeecCceeeeccceeE-Eeeeecccc--------------eeEe-----------ccc
Q psy17941 470 DLNSVSAVE---ESLNTNGKYELLVDDKEFVLTKDMIS-IKKSTKTFH--------------VEEI-----------IPS 520 (679)
Q Consensus 470 ~~~~~~~~~---~~l~~~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~--------------~~~~-----------~P~ 520 (679)
..+.+..+. +.+...| + ...+.+++.+++ ++|||..++ |+|| +|.
T Consensus 566 ~~~aL~eL~~L~~~L~~~g-----v-~~~I~fDlsLvRGLDYYTGiVFE~~~~g~~~gsIagGGRYD~Lv~~FgG~~vPA 639 (763)
T PLN02972 566 SRAALDELEIMFKALEKSK-----A-IGKIVFDLSLARGLDYYTGVIYEAVFKGAQVGSIAAGGRYDNLVGMFSGKQVPA 639 (763)
T ss_pred HHHHHHHHHHHHHHHHhcC-----C-CccEEECCcccCCCcccCceEEEEEEcCCccceeeecCCchhHHHhcCCCCCCE
Confidence 011122222 2332221 1 124777788888 788877775 4455 566
Q ss_pred eeeccccHHHHHHHHHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCC
Q psy17941 521 VIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGS 600 (679)
Q Consensus 521 vi~~s~GIeRll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~s 600 (679)
| |+|+|+|||+.++.+...... ..+++ ++.+|+|++.+++ ....+.++++.||++||+++++. ..+
T Consensus 640 V-GFSiGIERL~~~L~~~~~~~~--------~~~~~--~~~dVlV~s~g~~--~l~~alkia~~LR~aGI~aE~~~-~~k 705 (763)
T PLN02972 640 V-GVSLGIERVFAIMEQQEEEKS--------QVIRP--TETEVLVSIIGDD--KLALAAELVSELWNAGIKAEYKV-STR 705 (763)
T ss_pred E-EEEecHHHHHHHHHHcccCCC--------CCCCC--CCCcEEEEEeCHH--HHHHHHHHHHHHHHCCCEEEEeC-CCC
Confidence 6 799999999987755321000 01221 4568999987643 67889999999999999999866 678
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 601 IGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 601 lgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
+++++++|++.|+||+||||++|+ ++|+|+||++.+++|..|+++++++.|++.+.
T Consensus 706 l~kq~~~A~k~gi~~vVIIGe~E~-~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 706 KAKHLKRAKESGIPWMVLVGEKEL-SKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred HHHHHHHHHHCCCCEEEEECchHH-hCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 999999999999999999999999 79999999999999999999999999987664
No 38
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=2e-33 Score=291.51 Aligned_cols=214 Identities=22% Similarity=0.237 Sum_probs=172.0
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCce
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMV 149 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~ 149 (679)
..++|+++||+.++ ++|+++|+|.|++++++|+++|+++| .+.|+++|.||+|++.++|++|||++.|.++||
T Consensus 6 ~~~l~~~ag~~~~~------~~G~~~~lP~g~~l~~~i~~~~~~~~-~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy 78 (255)
T cd00779 6 SHKLLLRAGFIRQT------SSGLYSWLPLGLRVLKKIENIIREEM-NKIGAQEILMPILQPAELWKESGRWDAYGPELL 78 (255)
T ss_pred HHHHHHHcCCcccC------CCceEEECchHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHHhcCCccccCcccE
Confidence 45699999998764 69999999999999999999999999 899999999999999999999999999999999
Q ss_pred eeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhh
Q psy17941 150 KDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFA 229 (679)
Q Consensus 150 ~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~ 229 (679)
+....+.. .++|.||+|+.++.+.+..+.+
T Consensus 79 ~~~d~~~~--------------------------------~l~LrPt~e~~~t~~~~~~i~s------------------ 108 (255)
T cd00779 79 RLKDRHGK--------------------------------EFLLGPTHEEVITDLVANEIKS------------------ 108 (255)
T ss_pred EEecCCCC--------------------------------eEEEecCCcHHHHHHHHhcccc------------------
Confidence 96443210 1367777777666666654433
Q ss_pred cccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhh
Q psy17941 230 TQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHA 309 (679)
Q Consensus 230 ~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~ 309 (679)
| ++||+++||+|+|||+|++|+.||+|+|||+|+|+|+||.+++.+..
T Consensus 109 -----------~---------------------~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~ 156 (255)
T cd00779 109 -----------Y---------------------KQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEE 156 (255)
T ss_pred -----------H---------------------hhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHH
Confidence 2 68999999999999999999999999999999999999998755433
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCcccccccc
Q psy17941 310 KFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYAC 389 (679)
Q Consensus 310 ~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~ 389 (679)
.+.. ++.....++..+|+++.... ...+.|+...+
T Consensus 157 ~~~~------------------------------------------i~~~~~~il~~Lgl~~~~~~---~~~~~~gg~~s 191 (255)
T cd00779 157 TYEK------------------------------------------MYQAYSRIFKRLGLPFVKVE---ADSGAIGGSLS 191 (255)
T ss_pred HHHH------------------------------------------HHHHHHHHHHHcCCcEEEEE---ecCCCCCCccc
Confidence 2222 23334566678999765443 23467777777
Q ss_pred CccchhhhccC-CceeeeeccccchhhHh
Q psy17941 390 DCWDAECLTSY-GWVECVGCADRSAYDLT 417 (679)
Q Consensus 390 ~~~d~e~~~~~-g~~e~~~~~~r~~~dl~ 417 (679)
.+||+|.|+|. +++|+.+|++.+|++.+
T Consensus 192 ~~~~~e~~~~~~~~~e~~s~~~lg~~~sr 220 (255)
T cd00779 192 HEFHVLSPLKITKGIEVGHIFQLGTKYSK 220 (255)
T ss_pred EEEEEEEecCCCCeEEEEeeeecchhHHH
Confidence 88999999875 58999999988887654
No 39
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=99.97 E-value=5.3e-30 Score=282.41 Aligned_cols=365 Identities=20% Similarity=0.233 Sum_probs=225.2
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcC--CcccccCCceeeCCCCcccchhhhHHHH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASG--HVDRFADLMVKDLKTGECFRLDHLIKAH 167 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SG--h~~~f~d~m~~d~~~~~~~r~d~l~~~~ 167 (679)
++|+.||+|.++.+++.|++.+++.| .++||.+|.||+|++.++|..++ +.+.+.+.||+-...
T Consensus 3 p~G~~d~~p~~~~~~~~i~~~i~~~f-~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~------------- 68 (397)
T TIGR00442 3 PRGTRDFLPEEMIKWQYIEETIREVF-ELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDK------------- 68 (397)
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHH-HHcCCeEecCcccchHHHhhhccCccccccccceEEEECC-------------
Confidence 68999999999999999999999999 99999999999999999998753 222244555542110
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccch
Q psy17941 168 LEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETA 247 (679)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~a 247 (679)
+++...|||++|
T Consensus 69 --------------------------------------------------------------------~g~~l~LRpD~T 80 (397)
T TIGR00442 69 --------------------------------------------------------------------GGRSLTLRPEGT 80 (397)
T ss_pred --------------------------------------------------------------------CCCEEeecCCCc
Confidence 123458999999
Q ss_pred hhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHH-Hh
Q psy17941 248 QGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYS-AC 326 (679)
Q Consensus 248 qgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~-~~ 326 (679)
.++.+.+.+... ...+|+++|++|+|||+| ++..| |.|||+|+++|+|+.++.. .|++++.+.. -+
T Consensus 81 ~~iaR~~~~~~~--~~~~p~r~~y~g~vfR~e-~~~~g--r~ref~Q~g~eiig~~~~~--------~d~E~i~l~~e~l 147 (397)
T TIGR00442 81 APVARAVIENKL--LLPKPFKLYYIGPMFRYE-RPQKG--RYRQFHQFGVEVIGSDSPL--------ADAEIIALAAEIL 147 (397)
T ss_pred HHHHHHHHhccc--ccCCCeEEEEEcCeecCC-CCCCC--cccceEEcCeeeeCCCCHH--------HHHHHHHHHHHHH
Confidence 999988875432 356899999999999999 67777 9999999999999987643 2334311111 11
Q ss_pred hccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccCCceeee
Q psy17941 327 NQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECV 406 (679)
Q Consensus 327 ~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~ 406 (679)
..+|- ....+.+++.. ++. ..+. +...+...+.+. . +. +
T Consensus 148 ~~lg~-~~~~i~i~~~~---i~~-~~~~-~~~~l~~~l~~~-~--~~------~-------------------------- 186 (397)
T TIGR00442 148 KELGI-KDFTLEINSLG---ILE-GRLE-YREALLRYLDKH-L--DK------L-------------------------- 186 (397)
T ss_pred HHcCC-CceEEEecCcc---cHH-HHHH-HHHHHHHHHHHh-H--hh------c--------------------------
Confidence 12221 11123333221 110 0000 000111111100 0 00 0
Q ss_pred eccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhcCHhHHHHHHHhhhcCCc
Q psy17941 407 GCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGK 486 (679)
Q Consensus 407 ~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~~~~~~~~~~l~~~g~ 486 (679)
......... .+|..+.. .....+. .|.+..+.+.+.+....-++++++.+.+...|
T Consensus 187 --------~~~~~~~l~----------~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~- 242 (397)
T TIGR00442 187 --------GEDSVRRLE----------KNPLRILD----SKNEKIQ-ELLKEAPKILDFLDEESRAHFEELKELLDALG- 242 (397)
T ss_pred --------CHHHHHHHh----------hccccCch----hhhHHHH-HHHhcCHHHHHHhhHHHHHHHHHHHHHHHHcC-
Confidence 000000000 00000000 0000000 01111222333322111122333344443222
Q ss_pred EEEeecCceeeeccceeE-Eeeeecccc---------------eeEe-----------ccceeeccccHHHHHHHHHHhc
Q psy17941 487 YELLVDDKEFVLTKDMIS-IKKSTKTFH---------------VEEI-----------IPSVIEPSFGIGRIMYALFEHN 539 (679)
Q Consensus 487 ~~~~~~g~~f~i~~~~v~-~~~y~~~~~---------------~~~~-----------~P~vi~~s~GIeRll~al~e~~ 539 (679)
..+.+++.+++ ++|||..++ |++| .|+| |+|+|++||+.++.+.+
T Consensus 243 -------~~i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~av-Gfs~~~~~l~~~l~~~~ 314 (397)
T TIGR00442 243 -------IPYKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTPAV-GFAIGIERLLLLLEELG 314 (397)
T ss_pred -------CCEEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCceE-EeeecHHHHHHHHHhcC
Confidence 12555555665 566655543 3444 4666 79999999998876532
Q ss_pred cccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEE
Q psy17941 540 FKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITI 619 (679)
Q Consensus 540 ~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiV 619 (679)
.+|++.+|.+|+|++++. +....+.++++.||++|++|+++....++++++++|++.|+|++|+|
T Consensus 315 -------------~~~~~~~~~~vlV~~~~~--~~~~~~~~i~~~Lr~~gi~v~~~~~~~~l~k~~~~a~~~g~~~~i~i 379 (397)
T TIGR00442 315 -------------LEPPEESSPDVYVVPLGE--EAELEALKLAQKLRKAGIRVEVDLGGRKLKKQLKYADKLGARFAVIL 379 (397)
T ss_pred -------------CCCCCCCCCcEEEEEeCH--HHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 234445788999998764 36778999999999999999999888899999999999999999999
Q ss_pred eCCCCCCCCeEEEEECCCC
Q psy17941 620 DFDTLKEPHSVTLRERDSM 638 (679)
Q Consensus 620 G~~El~~~g~Vtlr~r~t~ 638 (679)
|++|+ ++++|+||++.||
T Consensus 380 g~~e~-~~~~v~vrnl~~~ 397 (397)
T TIGR00442 380 GEDEL-ANGTVTLKDLETG 397 (397)
T ss_pred ChhHH-hCCeEEEEeCCCC
Confidence 99999 7999999999875
No 40
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.5e-29 Score=280.90 Aligned_cols=379 Identities=16% Similarity=0.237 Sum_probs=237.7
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhh-cCCcccccCCceeeCCCCcccchhhhHHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKA-SGHVDRFADLMVKDLKTGECFRLDHLIKAH 167 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~-SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~ 167 (679)
.++|+.||+|..+.+++.|++.|++.| .++||.+|.||+|++.++|.. +|..+...+.||+....
T Consensus 6 ~p~G~~d~~p~~~~~~~~i~~~l~~~f-~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~------------- 71 (423)
T PRK12420 6 NVKGTKDYLPEEQVLRNKIKRALEDVF-ERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQ------------- 71 (423)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH-HHcCCEeccccccchHHHHhcccCCCcccccceEEEecC-------------
Confidence 379999999999999999999999999 999999999999999999975 34433333445442110
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccch
Q psy17941 168 LEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETA 247 (679)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~a 247 (679)
+++...||||.|
T Consensus 72 --------------------------------------------------------------------~g~~l~LRpD~T 83 (423)
T PRK12420 72 --------------------------------------------------------------------GKRDLALRYDLT 83 (423)
T ss_pred --------------------------------------------------------------------CCceeccccccc
Confidence 233568999999
Q ss_pred hhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHH-HHHh
Q psy17941 248 QGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVL-YSAC 326 (679)
Q Consensus 248 qgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~l-f~~~ 326 (679)
.++.|.+.... ...+|+++|++|+|||+| +|..| |.|||+|+++|+|+.+...+ |++++.+ +..+
T Consensus 84 ~~iaR~va~~~---~~~~p~r~~y~g~vfR~~-~~~~g--r~rE~~Q~g~EiiG~~~~~a--------daEvi~la~~~l 149 (423)
T PRK12420 84 IPFAKVVAMNP---NIRLPFKRYEIGKVFRDG-PIKQG--RFREFIQCDVDIVGVESVMA--------EAELMSMAFELF 149 (423)
T ss_pred HHHHHHHHhCc---CCCCCeeEEEEcceECCC-CCCCC--ccceeEECCeeeECCCCCcc--------cHHHHHHHHHHH
Confidence 99998876542 246799999999999999 78888 99999999999999766543 3443111 1111
Q ss_pred hccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccCCceeee
Q psy17941 327 NQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECV 406 (679)
Q Consensus 327 ~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~ 406 (679)
..+|- ...+.+++ ..-...++..+|++...... .+. +-++++ ..+|.+
T Consensus 150 ~~lg~--~~~i~l~~---------------~~l~~~il~~~~~~~~~~~~--~~~------~ld~~~-----~~~~~~-- 197 (423)
T PRK12420 150 RRLNL--EVTIQYNN---------------RKLLNGILQAIGIPTELTSD--VIL------SLDKIE-----KIGIDG-- 197 (423)
T ss_pred HHCCC--CEEEEEcC---------------HHHHHHHHHHcCCChhhhhc--hhh------heechh-----hcCHHH--
Confidence 22221 12333332 22334455667776543210 000 000000 011100
Q ss_pred eccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCc-cccc-----hhhHHHHHhhhcCHhHHHHHHHh
Q psy17941 407 GCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGK-EFKK-----DAKTICDALAALDLNSVSAVEES 480 (679)
Q Consensus 407 ~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~-~~~~-----~~~~i~d~L~~~~~~~~~~~~~~ 480 (679)
+.......+.+-.....+. .. +. .-|+ .+.. ..+.+.+.| +++.++...
T Consensus 198 ---------~~~~l~~~~l~~~~~~~l~--------~l-~~--~~~~~~~~~~~~~~~~~~~~~~l-----~~l~~l~~~ 252 (423)
T PRK12420 198 ---------VRKDLLERGISEEMADTIC--------NT-VL--SCLQLSIADFKEAFNNPLVAEGV-----NELQQLQQY 252 (423)
T ss_pred ---------HHHHHHHcCCCHHHHHHHH--------HH-Hh--ccChhhHHHHHHhccCHHHHHHH-----HHHHHHHHH
Confidence 0000000000000000000 00 00 0000 0000 001111221 123333344
Q ss_pred hhcCCcEEEeecCceeeeccceeE-Eeeeecccc---------------eeEe-------------ccceeeccccHHHH
Q psy17941 481 LNTNGKYELLVDDKEFVLTKDMIS-IKKSTKTFH---------------VEEI-------------IPSVIEPSFGIGRI 531 (679)
Q Consensus 481 l~~~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~---------------~~~~-------------~P~vi~~s~GIeRl 531 (679)
+...|. ...+.+++.+++ ++|||..++ |++| .|+| |+|+|++||
T Consensus 253 l~~~g~------~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~pAv-Gfa~~~~~l 325 (423)
T PRK12420 253 LIALGI------NENCIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDDMNYPTV-GISFGLDVI 325 (423)
T ss_pred HHHhCC------CCcEEEeccccCCCcccceeEEEEEecCCCccccccCCccHHHHHHHhCCCCCCCCce-eEEEcHHHH
Confidence 432221 112455566666 567765554 4455 3655 799999999
Q ss_pred HHHHHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHH-CCCeEEEeCCCCCHHHHHHHHHH
Q psy17941 532 MYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQ-NGISFKVDDSGGSIGKRYARTDE 610 (679)
Q Consensus 532 l~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~-~Gi~v~~D~~~~slgkq~k~Ad~ 610 (679)
+.++...+ ++. .|.+|+|+|++.. ..+.++++.||+ +|++|++|.++.++++++++|.+
T Consensus 326 ~~~l~~~~--------------~~~--~~~dvlI~~~~~~----~~a~~ia~~Lr~~~Gi~ve~~~~~~~l~~~i~~A~~ 385 (423)
T PRK12420 326 YTALSQKE--------------TIS--STADVFIIPLGTE----LQCLQIAQQLRSTTGLKVELELAGRKLKKALNYANK 385 (423)
T ss_pred HHHHHhcC--------------CCC--CCceEEEEEcCCH----HHHHHHHHHHHhhcCCeEEEecCCcCHHHHHHHHHH
Confidence 97764321 111 4789999997532 358999999999 99999999999999999999999
Q ss_pred hCCCEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHH
Q psy17941 611 IAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEV 648 (679)
Q Consensus 611 ~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el 648 (679)
.|+||+|+||++|+ ++++|+||++.+++|..|+++++
T Consensus 386 ~g~~~iviig~~e~-~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 386 ENIPYVLIIGEEEV-STGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred cCCCEEEEEChhHH-hcCeEEEEECCCCceeeeeHHHc
Confidence 99999999999999 79999999999999999998875
No 41
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.97 E-value=8.7e-30 Score=265.30 Aligned_cols=218 Identities=19% Similarity=0.162 Sum_probs=162.5
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCccccc-CCc
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFA-DLM 148 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~-d~m 148 (679)
..++|.|.|++..+ .++|+++|+|.|++++++|++++++++ .+.|++||.+|+|.+.++|++|||++++. ++|
T Consensus 6 ~~~~l~~ag~~~~~-----~~~G~~~~lP~g~~i~~~I~~~i~~~~-~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~ 79 (264)
T cd00772 6 SLEHIGKAELADQG-----PGRGIINFLPLAKAILDKIENVLDKMF-KEHGAQNALFPFFILASFLEKEAEHDEGFSKEL 79 (264)
T ss_pred HHHHHHhcCCcccc-----CCCCEEEECCcHHHHHHHHHHHHHHHH-HHcCCeEEECCeeccHHHHhhcCCcccccCccc
Confidence 46799999998754 279999999999999999999999999 99999999999999999999999999854 777
Q ss_pred eeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhh
Q psy17941 149 VKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMF 228 (679)
Q Consensus 149 ~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf 228 (679)
|.....+. +++- ..++|.||+|+.++.+.+..+++
T Consensus 80 ~~~~~~~~----~~~~------------------------~~l~LrPt~e~~~~~~~~~~i~s----------------- 114 (264)
T cd00772 80 AVFKDAGD----EELE------------------------EDFALRPTLEENIGEIAAKFIKS----------------- 114 (264)
T ss_pred eEEEeCCC----CccC------------------------ceEEECCCCCHHHHHHHHhhhhh-----------------
Confidence 76432111 0000 01466777776666666655443
Q ss_pred hcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchh
Q psy17941 229 ATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSH 308 (679)
Q Consensus 229 ~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~ 308 (679)
| ++||+++||+|+|||+|++|+.||+|+|||+|+|+|+|+...+.+.
T Consensus 115 ------------~---------------------~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~ 161 (264)
T cd00772 115 ------------W---------------------KDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEAD 161 (264)
T ss_pred ------------h---------------------hccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHH
Confidence 3 8999999999999999999999999999999999999954333332
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcC-CCccchhhhhccCcccccc
Q psy17941 309 AKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVG-IDPEKLRFRQHMGNEMAHY 387 (679)
Q Consensus 309 ~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g-~~~~~~~~r~~~~~e~~~y 387 (679)
..+.. .+...+.++..+| +|+.... ..++++...
T Consensus 162 ~e~~~------------------------------------------~~~~~~~i~~~l~~lp~~~~~---~~~~d~~~g 196 (264)
T cd00772 162 EEFLN------------------------------------------MLSAYAEIARDLAAIDFIEGE---ADEGAKFAG 196 (264)
T ss_pred HHHHH------------------------------------------HHHHHHHHHHhcCCccEEEEE---cCCCccccC
Confidence 22222 3344566777888 7766543 345677788
Q ss_pred ccCccchhhhccCC-ceeeeeccccchhhH
Q psy17941 388 ACDCWDAECLTSYG-WVECVGCADRSAYDL 416 (679)
Q Consensus 388 a~~~~d~e~~~~~g-~~e~~~~~~r~~~dl 416 (679)
+..++|+|+|+|.| +.++..+++.++++.
T Consensus 197 ~~~~~d~e~~~p~~~~~~~~~~~~~~~~~~ 226 (264)
T cd00772 197 ASKSREFEALMEDGKAKQAETGHIFGEGFA 226 (264)
T ss_pred CcCCEEEEEECCCCCEeEEEeeeeccCCch
Confidence 88999999999954 444444444555443
No 42
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.96 E-value=7.6e-30 Score=265.57 Aligned_cols=218 Identities=19% Similarity=0.147 Sum_probs=170.9
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhh-hhcCCcccccCCc
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVL-KASGHVDRFADLM 148 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~-~~SGh~~~f~d~m 148 (679)
.++|+++.+++... .++|+|+|+|.|++++++|++++++.+ .+.|++||.||+|.+.++| +.||||++|.++|
T Consensus 6 ~~~l~~~~~~~d~~-----~~~G~~~~lP~g~~l~~~l~~~~~~~~-~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~ 79 (261)
T cd00778 6 YTEVITKAELIDYG-----PVKGCMVFRPYGYAIWENIQKILDKEI-KETGHENVYFPLLIPESELEKEKEHIEGFAPEV 79 (261)
T ss_pred HHHHHHHhCCcccC-----CCCCeEEEcccHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHhhhhhcchhhcCcce
Confidence 46788888887322 378999999999999999999999999 8999999999999999998 5699999999999
Q ss_pred eeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhh
Q psy17941 149 VKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMF 228 (679)
Q Consensus 149 ~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf 228 (679)
|+....+.. ++ . -.++|.||+|+.++.+.+..+.|
T Consensus 80 f~~~~~~~~----~~------------------~------~~~~L~Pt~e~~~~~~~~~~i~s----------------- 114 (261)
T cd00778 80 AWVTHGGLE----EL------------------E------EPLALRPTSETAIYPMFSKWIRS----------------- 114 (261)
T ss_pred EEEEecCCc----cc------------------C------CcEEEcCCCCHHHHHHHHhhccc-----------------
Confidence 996443210 00 0 01578888888888877766655
Q ss_pred hcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEE-EeCCCcch
Q psy17941 229 ATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEH-FCDPTDKS 307 (679)
Q Consensus 229 ~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~-F~~~~~~~ 307 (679)
| ++||+++||+|+|||+|.+++.||+|+|||+|.|+|+ ||++++.
T Consensus 115 ------------~---------------------r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~- 160 (261)
T cd00778 115 ------------Y---------------------RDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEA- 160 (261)
T ss_pred ------------h---------------------hhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHH-
Confidence 4 8899999999999999999999999999999999997 5666554
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHc-CCCccchhhhhccCccccc
Q psy17941 308 HAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISV-GIDPEKLRFRQHMGNEMAH 386 (679)
Q Consensus 308 ~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~-g~~~~~~~~r~~~~~e~~~ 386 (679)
...|..+.++ .+.++..+ |++..... .+.+++..
T Consensus 161 ~~~~~~~~~~------------------------------------------~~~i~~~llgl~~~~~~---~~~~d~~~ 195 (261)
T cd00778 161 EEEVLQILDL------------------------------------------YKEFYEDLLAIPVVKGR---KTEWEKFA 195 (261)
T ss_pred HHHHHHHHHH------------------------------------------HHHHHHHhCCCeEEEec---CCccccCC
Confidence 3444444333 34455666 88865442 24467888
Q ss_pred cccCccchhhhccCC-ceeeeeccccchhhHh
Q psy17941 387 YACDCWDAECLTSYG-WVECVGCADRSAYDLT 417 (679)
Q Consensus 387 ya~~~~d~e~~~~~g-~~e~~~~~~r~~~dl~ 417 (679)
.+..+||+|.++|.| +.||.+|++.++++.+
T Consensus 196 ~a~~~~~ie~~~p~~~~~ev~s~~~l~~~~s~ 227 (261)
T cd00778 196 GADYTYTIEAMMPDGRALQSGTSHNLGQNFSK 227 (261)
T ss_pred CCccceEEEEEeeCCCEEEEEeccccccccch
Confidence 888999999999965 6799999888776543
No 43
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.95 E-value=4e-28 Score=237.42 Aligned_cols=170 Identities=32% Similarity=0.505 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHhh-hhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchh
Q psy17941 103 LKTNMLSAWRQFFVL-EEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSV 181 (679)
Q Consensus 103 l~~~i~~~~r~~~~~-~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~ 181 (679)
|+++|+++|++++ . +.|+++|.+|+|.+.++|++|||++.|.+.||+....+.
T Consensus 1 l~~~l~~~~~~~~-~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~------------------------- 54 (173)
T PF00587_consen 1 LRNALERFIREEF-VLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGD------------------------- 54 (173)
T ss_dssp HHHHHHHHHHHHH-HHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTT-------------------------
T ss_pred CHHHHHHHHHHHh-HHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeeccc-------------------------
Confidence 6899999999999 6 999999999999999999999999999999998654321
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhc
Q psy17941 182 KEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFN 261 (679)
Q Consensus 182 ~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~ 261 (679)
...+|||+++++++..|++.+..+
T Consensus 55 --------------------------------------------------------~~~~L~pt~~~~~~~~~~~~~~~~ 78 (173)
T PF00587_consen 55 --------------------------------------------------------EEYCLRPTSEPGIYSLFKNEIRSS 78 (173)
T ss_dssp --------------------------------------------------------EEEEE-SSSHHHHHHHHHHHEEBH
T ss_pred --------------------------------------------------------ccEEeccccccceeeeecceeeec
Confidence 124899999999999999887664
Q ss_pred cCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecc
Q psy17941 262 SGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGE 341 (679)
Q Consensus 262 ~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~ 341 (679)
.++||++++|+|+|||+|.+|..||+|+|||+|.|+|+||.|++. ...
T Consensus 79 ~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~-~~~------------------------------- 126 (173)
T PF00587_consen 79 YRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQS-EEE------------------------------- 126 (173)
T ss_dssp GGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHH-HHH-------------------------------
T ss_pred cccCCeEEeecccccccccccccccceeeEeeeeceEEEeCCccc-HHH-------------------------------
Confidence 678999999999999999999999999999999999999999433 221
Q ss_pred cccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhcc
Q psy17941 342 AVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTS 399 (679)
Q Consensus 342 a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~ 399 (679)
...+++.+..++..+|+ +.+++....+++|++++..+||+|.|+|
T Consensus 127 -----------~~~~~~~~~~i~~~lgl--~~~~~~~~~~~~~~~~~~~~~d~e~~~~ 171 (173)
T PF00587_consen 127 -----------FEELLELYKEILEKLGL--EPYRIVLSSSGELGAYAKYEFDIEAWFP 171 (173)
T ss_dssp -----------HHHHHHHHHHHHHHTTS--GCEEEEEEETCTSCTTSSEEEEEEEEET
T ss_pred -----------HHHHHHHHHHHHHHcCC--ceEEEEEcCCCccCCCHHHcccHHHhCc
Confidence 23356666778889999 2233344566789999999999999876
No 44
>KOG4163|consensus
Probab=99.95 E-value=6e-28 Score=253.13 Aligned_cols=354 Identities=20% Similarity=0.259 Sum_probs=249.0
Q ss_pred cCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhh-hcCCcccccCCceeeCCCCcccchhhhHH
Q psy17941 87 YGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLK-ASGHVDRFADLMVKDLKTGECFRLDHLIK 165 (679)
Q Consensus 87 ~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~-~SGh~~~f~d~m~~d~~~~~~~r~d~l~~ 165 (679)
|+.++|+|.+-|.+.++|.+|..+....+ ++.|..+...|+|.+..+++ ..-|++.|+.++-..++.|.. . +
T Consensus 84 YydvsGcyilRP~s~aIWe~Iq~wfd~~i-k~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwVTr~G~s----e-L- 156 (551)
T KOG4163|consen 84 YYDVSGCYILRPWSYAIWEAIQDWFDAEI-KKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWVTRAGNS----E-L- 156 (551)
T ss_pred eecccceEEecchHHHHHHHHHHHHHHHH-HHhccccceeeeecCHHHHhhhhhhhccCCcceEEEEecCCc----c-c-
Confidence 67799999999999999999999999988 99999999999999999997 468999999999887776641 0 0
Q ss_pred HHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCcc
Q psy17941 166 AHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPE 245 (679)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE 245 (679)
+|.+ .|.|+++...|
T Consensus 157 --------------------------------eepi-----------------------------aiRPTSETvmy---- 171 (551)
T KOG4163|consen 157 --------------------------------EEPI-----------------------------AIRPTSETVMY---- 171 (551)
T ss_pred --------------------------------ccce-----------------------------eeccCccceec----
Confidence 1111 24455555555
Q ss_pred chhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEe-CCCcchhhhHHHHHHHHHHHHHH
Q psy17941 246 TAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFC-DPTDKSHAKFSDVETTQMMVLYS 324 (679)
Q Consensus 246 ~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~-~~~~~~~~~~~~v~d~~~~~lf~ 324 (679)
-.|.+++.. .|+||+++.|+.++-|.|.+...-.+|.|||.+.|.|.-+ +++++..+ -..+.|+|.
T Consensus 172 ------p~yakWi~S-hRDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfat~~eA~eE-vlqiLdlYa----- 238 (551)
T KOG4163|consen 172 ------PYYAKWIQS-HRDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATPEEAEEE-VLQILDLYA----- 238 (551)
T ss_pred ------HHHHHHHHh-hccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhCCHhHHHHH-HHHHHHHHH-----
Confidence 234444432 3899999999999999999976777899999999999955 45544322 122222222
Q ss_pred HhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccCCcee
Q psy17941 325 ACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVE 404 (679)
Q Consensus 325 ~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e 404 (679)
+++.-+ +.+|..+ .|.. .+|.-..+.-+.++|...+
T Consensus 239 ----------------------------------~vy~el--lAiPVvk--GrKs-e~EkFaGgd~TttvEa~i~----- 274 (551)
T KOG4163|consen 239 ----------------------------------RVYEEL--LAIPVVK--GRKS-EKEKFAGGDYTTTVEAFIP----- 274 (551)
T ss_pred ----------------------------------HHHHhh--hcccccc--Cccc-hhhhccCCcceEEEeeeec-----
Confidence 222222 2232221 1111 1111111111233443322
Q ss_pred eeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhcCHhHHHHHHHhhhcC
Q psy17941 405 CVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTN 484 (679)
Q Consensus 405 ~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~~~~~~~~~~l~~~ 484 (679)
+.-|+-.- ..+..+|+.|.+ +
T Consensus 275 ---~~GrgiQg------------------------------aTSH~LGQNFSk----------------------m---- 295 (551)
T KOG4163|consen 275 ---CSGRGIQG------------------------------ATSHHLGQNFSK----------------------M---- 295 (551)
T ss_pred ---cccccccc------------------------------cchhhhhHHHHH----------------------h----
Confidence 11121111 122334444432 1
Q ss_pred CcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccHH-HHHHHHHHhccccCCCccccccccCCCCCCCceE
Q psy17941 485 GKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIG-RIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKA 563 (679)
Q Consensus 485 g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIe-Rll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V 563 (679)
|++. |... +..-...|...|+|+. |.+.+++..|.|+.| +.+||.+||+||
T Consensus 296 -----------F~i~--------~ed~--~~g~~~fv~QnSWg~sTRtiGvmiM~HgDdkG-------LvLPPrVA~vQv 347 (551)
T KOG4163|consen 296 -----------FEIV--------FEDP--GEGEKEFVWQNSWGLSTRTIGVMIMTHGDDKG-------LVLPPRVAPVQV 347 (551)
T ss_pred -----------hcee--------ecCC--CccchhheeecccccccceeeEEEEEecCCcc-------cccCCcccceEE
Confidence 1111 1111 1122345778899998 999988888888888 999999999999
Q ss_pred EEEecCCC--------CChHHHHHHHHHHHHHCCCeEEEeCC-CCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEE
Q psy17941 564 SILPLSSN--------PEFQPFIKMLSSELSQNGISFKVDDS-GGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRE 634 (679)
Q Consensus 564 ~Vi~l~~~--------~e~~~~a~~l~~~Lr~~Gi~v~~D~~-~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~ 634 (679)
.|+|++-. .++...|..+...|..+||+++.|++ +.+.|.+|.+++..|+|..|-||.+++ ++++|.+-.
T Consensus 348 VvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~giR~~~D~rDnytpGwKfnhwElkGVPlRiEiGPrD~-~~~qv~~Vr 426 (551)
T KOG4163|consen 348 VVVPVGITDATSEEDKQELLDACSAVESRLLGAGIRAEADLRDNYTPGWKFNHWELKGVPLRIEIGPRDL-ASNQVVAVR 426 (551)
T ss_pred EEEeccccccCchHHHHHHHHHHHHHHHHHhccCceEeecccccCCCCccccceeecCceeEEEeccchh-hhCeEEEEE
Confidence 99998631 23567899999999999999999988 779999999999999999999999999 799999999
Q ss_pred CCCCceEEEehHHHHHHHHHHHh
Q psy17941 635 RDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 635 r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
|++++...|+++++...|+++++
T Consensus 427 Rd~~~K~~v~~~~l~~~v~elLe 449 (551)
T KOG4163|consen 427 RDTGEKKDVSLGDLEKTVKELLE 449 (551)
T ss_pred ccCCcccccCHHHHHHHHHHHHH
Confidence 99999999999999999887765
No 45
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=99.93 E-value=5.3e-26 Score=252.90 Aligned_cols=252 Identities=13% Similarity=0.080 Sum_probs=182.2
Q ss_pred CCChHHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCccc
Q psy17941 64 SFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDR 143 (679)
Q Consensus 64 ~~~~~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~ 143 (679)
.|+ ....+++.+.|.+.. .+++|+|.|+|.|++|+++|++++++.+..+.||.+|.+|.|.+.++|++|||+++
T Consensus 192 ~F~-~~h~el~~~~glldk-----~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~ 265 (517)
T PRK00960 192 TFD-GDPTEEAEKLGWVKR-----FPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEG 265 (517)
T ss_pred CCC-CCHHHHHHHCCCccc-----cCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccC
Confidence 454 444667777777653 25899999999999999999999998743778999999999999999999999999
Q ss_pred ccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchh
Q psy17941 144 FADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPME 223 (679)
Q Consensus 144 f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~ 223 (679)
|.++||.....+. .+...++ ...++.+|+|.....+.. .+..
T Consensus 266 F~e~my~V~~~~~---d~e~~~~----------------------~~~~l~~T~Evpl~~~~~-~L~~------------ 307 (517)
T PRK00960 266 LPEGMYYVCPPKR---DPEYFEE----------------------FVDEMMVKKEVPIEKLKE-KLRD------------ 307 (517)
T ss_pred ChhhceEeecccc---ccccccc----------------------hhhhcccccccccccccc-cccc------------
Confidence 9999998532110 0000000 013566666655443221 1111
Q ss_pred hhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeec-ccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 224 FNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQ-IGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 224 fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~q-ig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
....|||-++-+++..|.+.. .+.++||+++++ .|+|||+|.+..+||+|+|||+|.|+++||+
T Consensus 308 --------------~~yvLrPa~Cp~~y~~~~~~i-ls~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h~f~t 372 (517)
T PRK00960 308 --------------PGYVLAPAQCEPFYQFFQGET-VDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIVWLGT 372 (517)
T ss_pred --------------ccccccccCcHHHHHHHhCCc-CChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEEEEeC
Confidence 234678877777777776432 244799999999 6799999966689999999999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCC-ccchh------
Q psy17941 303 PTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGID-PEKLR------ 375 (679)
Q Consensus 303 ~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~-~~~~~------ 375 (679)
|++... + +..++...+.++..+|++ +..+.
T Consensus 373 pEqs~e---------e----------------------------------~e~ll~~~e~i~~~LgLp~~r~v~~DPFf~ 409 (517)
T PRK00960 373 PEQVEE---------I----------------------------------RDELLKYAHILAEKLDLEYWREVGDDPFYL 409 (517)
T ss_pred HHHHHH---------H----------------------------------HHHHHHHHHHHHHHcCCCceEEeccccccc
Confidence 987642 1 122455677888899999 44332
Q ss_pred -hhhccCccccccccCccchhhhcc----C-CceeeeeccccchhhHh
Q psy17941 376 -FRQHMGNEMAHYACDCWDAECLTS----Y-GWVECVGCADRSAYDLT 417 (679)
Q Consensus 376 -~r~~~~~e~~~ya~~~~d~e~~~~----~-g~~e~~~~~~r~~~dl~ 417 (679)
-+..+.++|.+.+..++|+|.|+| . .|+|+.+|++.++|+.+
T Consensus 410 ~~~k~~~~d~~f~~~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~far 457 (517)
T PRK00960 410 EGRGLEDRGIEFPDVPKYEMELWLPYRGDERKWVAVTSANVHGTHFVE 457 (517)
T ss_pred ccCccccccccCccccceeEEEEecCccCCCCEEEEEeeeeccchhhH
Confidence 122344577788888999999998 2 58999999988777654
No 46
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.93 E-value=1.6e-25 Score=228.90 Aligned_cols=193 Identities=21% Similarity=0.214 Sum_probs=147.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCc
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQ 179 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~ 179 (679)
|++++++|++.|++.| .+.||++|.||+|.+.++|.++||++.|.+.||+....+..
T Consensus 1 ~~~~~~~l~~~~~~~~-~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 57 (235)
T cd00670 1 GTALWRALERFLDDRM-AEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRE---------------------- 57 (235)
T ss_pred CHHHHHHHHHHHHHHH-HHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCccc----------------------
Confidence 6889999999999999 99999999999999999999999999999999885433210
Q ss_pred hhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhh
Q psy17941 180 SVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLE 259 (679)
Q Consensus 180 ~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~ 259 (679)
..+...+|||++|+++++.|++.+.
T Consensus 58 -------------------------------------------------------~~~~~~~LrP~~~~~i~~~~~~~~~ 82 (235)
T cd00670 58 -------------------------------------------------------LRDTDLVLRPAACEPIYQIFSGEIL 82 (235)
T ss_pred -------------------------------------------------------ccCCeEEEecCCCHHHHHHHhccCc
Confidence 0123469999999999999987653
Q ss_pred hccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEee
Q psy17941 260 FNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITI 339 (679)
Q Consensus 260 ~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~ 339 (679)
.. ++||++++|+|+|||+|.+++.|+.|+|||+|.|+|+|+.+++.. +.+..
T Consensus 83 ~~-~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~-~~~~e-------------------------- 134 (235)
T cd00670 83 SY-RALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAE-EERRE-------------------------- 134 (235)
T ss_pred cc-hhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHH-HHHHH--------------------------
Confidence 22 689999999999999999888999999999999999999987432 22222
Q ss_pred cccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCcc--------ccccccCccchhhhccC--Cceeeeecc
Q psy17941 340 GEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNE--------MAHYACDCWDAECLTSY--GWVECVGCA 409 (679)
Q Consensus 340 ~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e--------~~~ya~~~~d~e~~~~~--g~~e~~~~~ 409 (679)
+++....++..+|++.. +... ..++ .++|+..++|+|++.+. +|.|+.+++
T Consensus 135 ----------------~~~~~~~~l~~lgl~~~-i~~~--~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~ 195 (235)
T cd00670 135 ----------------WLELAEEIARELGLPVR-VVVA--DDPFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETAVGS 195 (235)
T ss_pred ----------------HHHHHHHHHHHcCCcEE-EEEc--cChhhccCCccccccccCCceEEEEEecCCCCceeeeEEE
Confidence 23344455566676533 1111 1112 24788889999999887 688888887
Q ss_pred ccchhhHh
Q psy17941 410 DRSAYDLT 417 (679)
Q Consensus 410 ~r~~~dl~ 417 (679)
.+.+++..
T Consensus 196 ~~~~~~~~ 203 (235)
T cd00670 196 ANVHLDHF 203 (235)
T ss_pred eecchhhh
Confidence 77666544
No 47
>KOG2509|consensus
Probab=99.92 E-value=2.3e-24 Score=228.57 Aligned_cols=282 Identities=17% Similarity=0.212 Sum_probs=210.6
Q ss_pred HHhhhHHHHHHHHHHhHHHHH--HHHcCCChHHHHHHHHH---------HHHHHH-------HhhHHHhh-------cCC
Q psy17941 6 VEAELAPLRAAVKEQGDIVRA--LKAEGAPELDVKKAVAE---------LKLRKK-------VLDERELK-------LAP 60 (679)
Q Consensus 6 ~~~~~~~l~a~~~~~~~~v~~--lk~~~~~~~~i~~~v~~---------l~~~~~-------~le~~~~~-------~~~ 60 (679)
-..++.+|+.+.|.+.+.|+. +|+ +++..++.+...+ |+++.. +|+.+..+ +.-
T Consensus 46 ~~~~ldeln~~~n~l~k~i~~~k~kk-ke~~~~l~~~~~~~~~~~~~~~l~e~~~~~~~~~~~l~~el~~~~~~ipN~~h 124 (455)
T KOG2509|consen 46 TRFELDELNKEKNKLNKEIGDLKLKK-KEDIGQLEESKAKNTEGAERKLLKEEAVELEEDESKLEDELYEVLLQIPNITH 124 (455)
T ss_pred hhHHHHHHHHHHHHhhhHhhHHHHhh-cchhhHHHHhhhHhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHhCCCcCC
Confidence 346778888889999988883 333 3333333222222 222222 33322111 133
Q ss_pred CCCCCChHHHHHHHHHhcc----ccc--h-hhh------c----C---CCCcceeeCcchHHHHHHHHHHHHHHHhhhhC
Q psy17941 61 FVSSFDRAKMEDLLKRRFF----YDQ--S-FSI------Y----G---GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQ 120 (679)
Q Consensus 61 ~~~~~~~~~~~~l~~r~~f----~~~--~-~ei------~----~---~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g 120 (679)
|++|++.++.++++.+.+= -.+ + .++ + | .+...|.+...|+.|..+|+++-.+.. .+.|
T Consensus 125 psVpv~~ee~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l-~~kG 203 (455)
T KOG2509|consen 125 PSVPVSNEEQANVVQRVGGPLEFEFKLSHHDELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFL-NAKG 203 (455)
T ss_pred CCCCCCchhhhhHHHHhcCCcccccccccHHHHHHhcccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHH-HHcC
Confidence 7899988888777776321 111 1 111 1 1 234467788999999999999999977 8999
Q ss_pred ceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHH
Q psy17941 121 MLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEM 200 (679)
Q Consensus 121 ~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~ 200 (679)
|..+.+|.|++++|..+.|..++|.+.+++...+++ + .+|..|+|..
T Consensus 204 y~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~-----~----------------------------~~LiaTaE~p 250 (455)
T KOG2509|consen 204 YTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGD-----E----------------------------KYLIATAEQP 250 (455)
T ss_pred CccccCchhhhHHHHHHhccCcCCCcceEEeecCCc-----c----------------------------ceeEeeccch
Confidence 999999999999999999999999999998665542 1 3788999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCC
Q psy17941 201 DDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEI 280 (679)
Q Consensus 201 ~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~ 280 (679)
+..+++.+... ..+||++++.+++|||.|+
T Consensus 251 lAa~~~~e~~~--------------------------------------------------~~~lPiK~vg~S~CfR~Ea 280 (455)
T KOG2509|consen 251 LAAYHRDEWLE--------------------------------------------------EDQLPIKYVGVSRCFRAEA 280 (455)
T ss_pred hhhhhcccccc--------------------------------------------------cccCceeeeehhHHHHHHh
Confidence 98877754332 2789999999999999998
Q ss_pred CC----CCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHH
Q psy17941 281 SP----RSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYF 356 (679)
Q Consensus 281 ~p----r~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~ 356 (679)
+. ..||+|||||+..|+...|.|+++.. + ++++
T Consensus 281 Gs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~-------------~------------------------------~eEm 317 (455)
T KOG2509|consen 281 GSHGKDTKGLYRVHQFEKVEQFVITGPEDSWE-------------M------------------------------LEEM 317 (455)
T ss_pred hhcccccccceeeeeeeeeEEEEecCcchhHH-------------H------------------------------HHHH
Confidence 55 58999999999999999999998641 1 4456
Q ss_pred HHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccC--CceeeeeccccchhhHhH
Q psy17941 357 MARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY--GWVECVGCADRSAYDLTQ 418 (679)
Q Consensus 357 ~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~~dl~~ 418 (679)
+...+.|++++|+++..+.. .++++.+.|...||+|.|+|. -|.|+++|+||.|||.+.
T Consensus 318 i~~~eef~qsLgip~rvl~m---~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQSRR 378 (455)
T KOG2509|consen 318 INNQEEFYQSLGLPYRVLNM---PSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQSRR 378 (455)
T ss_pred HHHHHHHHHHhCCceeEecC---CchhhCcHHHhhcchhhhcCcccccccccccccchhHHHhh
Confidence 77888999999999987763 567888999999999999996 489999999999999875
No 48
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.90 E-value=8.9e-22 Score=216.50 Aligned_cols=342 Identities=18% Similarity=0.186 Sum_probs=205.6
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhh-cCCcccccCCceeeCCCCcccchhhhHHHHH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKA-SGHVDRFADLMVKDLKTGECFRLDHLIKAHL 168 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~-SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~ 168 (679)
+.|+.||+|..+..++.|++.+++.| .++||.+|.||+|++.+++.. +|+. ....||+...
T Consensus 6 p~G~~D~lp~~~~~~~~i~~~l~~~f-~~~Gy~~i~tP~lE~~e~~~~~~g~~--~~~~~~~f~d--------------- 67 (391)
T PRK12292 6 PEGIRDLLPEEARKIEEIRRRLLDLF-RRWGYEEVITPTLEYLDTLLAGGGAI--LDLRTFKLVD--------------- 67 (391)
T ss_pred CCcchhcCHHHHHHHHHHHHHHHHHH-HHcCCceeeCcchhhHHHHhccCCcc--chhhhEEEee---------------
Confidence 79999999999999999999999999 999999999999999999975 3432 1233443111
Q ss_pred HHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchh
Q psy17941 169 EKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQ 248 (679)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aq 248 (679)
+.+++...||||.|.
T Consensus 68 -----------------------------------------------------------------~~~g~~l~LRpD~T~ 82 (391)
T PRK12292 68 -----------------------------------------------------------------QLSGRTLGLRPDMTA 82 (391)
T ss_pred -----------------------------------------------------------------cCCCCEEEECCCCcH
Confidence 002345689999999
Q ss_pred hHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHH-Hhh
Q psy17941 249 GIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYS-ACN 327 (679)
Q Consensus 249 gi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~-~~~ 327 (679)
++.|.+...+ +....|+++|++|++||+| +|+.| |.|||+|+++|+|+.++.. +|++++.+.. .+.
T Consensus 83 ~iaR~~a~~~--~~~~~p~r~~y~g~vfR~~-~~~~g--r~ref~Q~g~EiiG~~~~~--------aDaEvi~l~~~~l~ 149 (391)
T PRK12292 83 QIARIAATRL--ANRPGPLRLCYAGNVFRAQ-ERGLG--RSREFLQSGVELIGDAGLE--------ADAEVILLLLEALK 149 (391)
T ss_pred HHHHHHHHhc--cCCCCCeEEEeeceeeecC-CCcCC--CccchhccceEEeCCCCch--------HHHHHHHHHHHHHH
Confidence 9999877543 2346799999999999999 88889 9999999999999976654 3455422211 122
Q ss_pred ccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccch-hhhhccCccccccccCccchhhhccCCceeee
Q psy17941 328 QMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKL-RFRQHMGNEMAHYACDCWDAECLTSYGWVECV 406 (679)
Q Consensus 328 ~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~-~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~ 406 (679)
++|- ....+.+++. +....++..+|++.... .+...+. ..+.-.++.+..
T Consensus 150 ~lgl-~~~~i~i~~~---------------~i~~~il~~~~~~~~~~~~l~~~l~------~~~~~~~~~~~~------- 200 (391)
T PRK12292 150 ALGL-PNFTLDLGHV---------------GLFRALLEAAGLSEELEEVLRRALA------NKDYVALEELVL------- 200 (391)
T ss_pred HcCC-CCeEEEeccH---------------HHHHHHHHHcCCCHHHHHHHHHHHH------hcCHHHHHHHHh-------
Confidence 2221 1223444432 22344556667665421 1111110 000000110000
Q ss_pred eccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCc-cccchhhHHHHHhhhcCHhHHHH---HHHhhh
Q psy17941 407 GCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGK-EFKKDAKTICDALAALDLNSVSA---VEESLN 482 (679)
Q Consensus 407 ~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~-~~~~~~~~i~d~L~~~~~~~~~~---~~~~l~ 482 (679)
+ ++..... .+. .+ + ...|. ...+.++.+... ....+.++. +-..++
T Consensus 201 ~--------l~~~~~~---~l~---~l------------~--~~~g~~~~l~~~~~~~~~--~~~~~~l~~L~~l~~~l~ 250 (391)
T PRK12292 201 D--------LSEELRD---ALL---AL------------P--RLRGGREVLEEARKLLPS--LPIKRALDELEALAEALE 250 (391)
T ss_pred c--------CCHHHHH---HHH---HH------------H--HhcCCHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHH
Confidence 0 0000000 000 00 0 00010 000001111000 000111222 333333
Q ss_pred cCCcEEEeecCceeeeccceeE-Eeeeecccc-------------eeEe----------ccceeeccccHHHHHHHHHHh
Q psy17941 483 TNGKYELLVDDKEFVLTKDMIS-IKKSTKTFH-------------VEEI----------IPSVIEPSFGIGRIMYALFEH 538 (679)
Q Consensus 483 ~~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~-------------~~~~----------~P~vi~~s~GIeRll~al~e~ 538 (679)
..| + +..+.+++.+++ ++|||..++ |++| .|+| |+|+|++||+.+ .
T Consensus 251 ~~~-----~-~~~i~~D~~lvrgl~YYtG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~~~pAv-Gfai~ldrl~~~---~ 320 (391)
T PRK12292 251 KYG-----Y-GIPLSLDLGLLRHLDYYTGIVFEGYVDGVGNPIASGGRYDDLLGRFGRARPAT-GFSLDLDRLLEL---Q 320 (391)
T ss_pred HhC-----C-CceEEEehhhccCCcCccceEEEEEECCCCCcccCCcchhhHHHHcCCCCCCc-eEEeeHHHHHhh---c
Confidence 221 1 235777788888 788887775 4556 6777 799999999863 1
Q ss_pred ccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCC
Q psy17941 539 NFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAI 613 (679)
Q Consensus 539 ~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gi 613 (679)
. .+. ..+.+++|++.++. ....+.++++.||+.|++|+++....++++++++|++.|+
T Consensus 321 ~-------------~~~--~~~~~~~v~~~~~~--~~~~a~~~~~~Lr~~G~~~~~~~~~~~~~~~~~~a~~~~~ 378 (391)
T PRK12292 321 L-------------ELP--VEARKDLVIAPDSE--ALAAALAAAQELRKKGEIVVLALPGRNFEDAREYARDRQI 378 (391)
T ss_pred c-------------ccc--cccCCcEEEEeCcc--cHHHHHHHHHHHHHcCCEEEEecCCCChHHHHHHHhhcCe
Confidence 0 111 13456777776543 5677999999999999999999888889999999999998
No 49
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=99.88 E-value=3.2e-22 Score=219.64 Aligned_cols=234 Identities=15% Similarity=0.080 Sum_probs=155.3
Q ss_pred CCChHHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCccc
Q psy17941 64 SFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDR 143 (679)
Q Consensus 64 ~~~~~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~ 143 (679)
.|. ....+++.+.+.+.. ..++|+|.|.|.|++|+++|++++.+..+.+.||+++.+|.|.|.++|.++||+++
T Consensus 192 ~F~-~~h~el~~k~glidk-----~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~g 265 (520)
T TIGR00415 192 FFD-GDPTDEAEKLGWVKK-----FPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEG 265 (520)
T ss_pred CCC-CCHHHHHHHCCCeeE-----EcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCC
Confidence 354 455678888887742 35899999999999999999999976553778999999999999999999999999
Q ss_pred ccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchh
Q psy17941 144 FADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPME 223 (679)
Q Consensus 144 f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~ 223 (679)
|.++||+....+. .+..++++.. ++..|++.....|. ..+.
T Consensus 266 F~~e~y~Vt~~~~---d~d~~~~f~~----------------------~~~~~~eipi~~L~-~~le------------- 306 (520)
T TIGR00415 266 LPEGMYYCCAPKR---DPELFEEFKN----------------------ELIIKKEIPIDKLK-NGIK------------- 306 (520)
T ss_pred CchhheEEecCCC---Ccchhhcccc----------------------cccccccccccccc-cccc-------------
Confidence 9999998643221 0122222111 11111111111110 0000
Q ss_pred hhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeec-ccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 224 FNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQ-IGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 224 fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~q-ig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
....+|||=....+...|...+ +..++||++++| .++|||+|.+...|++|+|||+|.|++.+++
T Consensus 307 -------------~~~~vL~PTSE~ply~~~a~~I-ls~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~~~t 372 (520)
T TIGR00415 307 -------------DPGYVIAPAQCEPFYQFFEGEV-IDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVWIAE 372 (520)
T ss_pred -------------CCceEEeCccHHHHHHHHhccc-cChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEEEeC
Confidence 0123455555555544444321 123789999999 5589999988889999999999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchh-------
Q psy17941 303 PTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLR------- 375 (679)
Q Consensus 303 ~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~------- 375 (679)
|+++.. .+..|++....++..+|+++....
T Consensus 373 pEea~e-------------------------------------------~~e~mle~~~~~l~~L~Lpyrv~~adDPFf~ 409 (520)
T TIGR00415 373 PEETEE-------------------------------------------IRDKTLELAEDAADELDLEWWTEVGDDPFYL 409 (520)
T ss_pred HHHHHH-------------------------------------------HHHHHHHHHHHHHHHcCCCeEEeecCCcccc
Confidence 986531 123366677788888999776432
Q ss_pred -hhhccCccccccccCccchhhhcc
Q psy17941 376 -FRQHMGNEMAHYACDCWDAECLTS 399 (679)
Q Consensus 376 -~r~~~~~e~~~ya~~~~d~e~~~~ 399 (679)
-+.....+|.+.+..+||+++|.|
T Consensus 410 ~g~k~~~~dl~F~~a~KyDlevwiP 434 (520)
T TIGR00415 410 EGRKKEDRGIEFPDVPKYEMRLSLP 434 (520)
T ss_pred cccCcccccccCcccceEEEEEEEc
Confidence 011112345666667777777665
No 50
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.83 E-value=3.3e-19 Score=195.87 Aligned_cols=128 Identities=12% Similarity=-0.056 Sum_probs=102.9
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc-CCcccccCCceeeCCCCcccchhhhHHHHH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS-GHVDRFADLMVKDLKTGECFRLDHLIKAHL 168 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S-Gh~~~f~d~m~~d~~~~~~~r~d~l~~~~~ 168 (679)
++|+.|++|.-++.++.|.+.+++.| ..+||.+|.||+|+..+++.++ |... ...||+...
T Consensus 10 p~G~rD~lp~e~~~~~~i~~~l~~~f-~~~Gy~~I~tP~~E~~e~~~~~~g~~~--~~~~y~f~D--------------- 71 (392)
T PRK12421 10 PDGVADVLPEEAQKIERLRRRLLDLF-ASRGYQLVMPPLIEYLESLLTGAGQDL--KLQTFKLID--------------- 71 (392)
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHH-HHcCCEEeeCcchhhHHHHhccCCccc--hhceEEEEc---------------
Confidence 79999999999999999999999999 9999999999999999999753 4321 122433111
Q ss_pred HHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchh
Q psy17941 169 EKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQ 248 (679)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aq 248 (679)
+.+++...||||.|.
T Consensus 72 -----------------------------------------------------------------~~~g~~l~LRpD~T~ 86 (392)
T PRK12421 72 -----------------------------------------------------------------QLSGRLMGVRADITP 86 (392)
T ss_pred -----------------------------------------------------------------CCCCcEEEECCcCCH
Confidence 101234589999999
Q ss_pred hHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcc
Q psy17941 249 GIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 249 gi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~ 306 (679)
+|.|.....+ + ...|+++|++|++||++ .|+.| |.|||+|+++|.|+.+...
T Consensus 87 ~iaR~~a~~~--~-~~~p~R~~Y~g~VfR~~-~~~~g--r~rEf~Q~GvEiiG~~~~~ 138 (392)
T PRK12421 87 QVARIDAHLL--N-REGVARLCYAGSVLHTL-PQGLF--GSRTPLQLGAELYGHAGIE 138 (392)
T ss_pred HHHHHHHhhc--C-CCCceEEEEeeeEEEcC-CCcCC--CcCccceeceEEeCCCCch
Confidence 9999655432 2 36799999999999998 67888 9999999999999987654
No 51
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.83 E-value=6.9e-20 Score=169.02 Aligned_cols=120 Identities=55% Similarity=0.894 Sum_probs=110.4
Q ss_pred HHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCC
Q psy17941 535 LFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIP 614 (679)
Q Consensus 535 l~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip 614 (679)
|+||++.-+++|+.|.|+.||+|++|++|+|+|.+++++...++.++++.||++|++|++|++ .++++|+++|++.|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g~~ 79 (121)
T cd00858 1 LLEHSFRVREGDEGRIVLRLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIGTP 79 (121)
T ss_pred CchheeecccCCCccEEEEcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcCCC
Confidence 357888888999999999999999999999999873234778999999999999999999999 9999999999999999
Q ss_pred EEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHH
Q psy17941 615 FGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLS 656 (679)
Q Consensus 615 ~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~ 656 (679)
|+||||++|+ ++|+|+||++++++|..++++++.+.+.+++
T Consensus 80 ~~iiiG~~e~-~~~~v~lk~l~~~~~~~v~l~~l~~~l~~~~ 120 (121)
T cd00858 80 FCVTVDFDTL-EDGTVTIRERDSMRQVRVKIEELPSYLRELI 120 (121)
T ss_pred EEEEECcCch-hCCEEEEEECCCCceEEEEHHHHHHHHHHHh
Confidence 9999999999 7999999999999999999999988887664
No 52
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.83 E-value=8.5e-20 Score=169.79 Aligned_cols=113 Identities=22% Similarity=0.290 Sum_probs=103.0
Q ss_pred HhccccCCCccccccccCCCCCCCceEEEEecCC-CCChHHHHHHHHHHHHHCCCeEEEeCCCC---CHHHHHHHHHHhC
Q psy17941 537 EHNFKMRDGDEQRTYLALPPLVAPLKASILPLSS-NPEFQPFIKMLSSELSQNGISFKVDDSGG---SIGKRYARTDEIA 612 (679)
Q Consensus 537 e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~-~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~---slgkq~k~Ad~~G 612 (679)
|++++..| ++||+.+||++|+|+|+.. ++++.+++.+|++.|+++|++|.+|++.. ++|+||++++.+|
T Consensus 11 E~~~d~~G-------l~~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliG 83 (128)
T cd02426 11 KKGRQRQV-------LKLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMG 83 (128)
T ss_pred hcCCCCcE-------EECCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcC
Confidence 66666666 9999999999999999953 35688999999999999999999998865 9999999999999
Q ss_pred CCEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 613 IPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 613 ip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
+||+|+||++++ ++|+|++++|+|++++.++++++++.+.+++.
T Consensus 84 iP~~I~IG~~~l-~~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 84 VLFTLLISEQTL-ENGLLQLRSRDTTLKETIHISDLPDYLLRYIA 127 (128)
T ss_pred CCEEEEECCCcc-cCCEEEEEECCCCceEEEeHHHHHHHHHHHhh
Confidence 999999999999 89999999999999999999999999887653
No 53
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.73 E-value=2.6e-17 Score=165.14 Aligned_cols=105 Identities=28% Similarity=0.432 Sum_probs=97.1
Q ss_pred ccCCCCCCCceEEEEecCCC----CChHHHHHHHHHHHHHCCCeEEEeCCCC-CHHHHHHHHHHhCCCEEEEEeCCCCCC
Q psy17941 552 LALPPLVAPLKASILPLSSN----PEFQPFIKMLSSELSQNGISFKVDDSGG-SIGKRYARTDEIAIPFGITIDFDTLKE 626 (679)
Q Consensus 552 l~~P~~laP~~V~Vi~l~~~----~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~-slgkq~k~Ad~~Gip~~IiVG~~El~~ 626 (679)
++||+++||+||+|+|++.+ +...+++.+|++.|+++||+|++|+++. ++|+||++|++.|+||+|+||++|+ +
T Consensus 2 LvlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~El-e 80 (202)
T cd00862 2 LVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDL-E 80 (202)
T ss_pred CcCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchh-h
Confidence 78999999999999999753 2277899999999999999999999887 9999999999999999999999999 8
Q ss_pred CCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 627 PHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 627 ~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
+|+|+|++|+++++..++++++++.|..+++
T Consensus 81 ~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~ 111 (202)
T cd00862 81 KNTVVIVRRDTGEKKTVPLAELVEKVPELLD 111 (202)
T ss_pred CCEEEEEEecCCcceEEEHHHHHHHHHHHHH
Confidence 9999999999999999999999988876654
No 54
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.70 E-value=9.3e-17 Score=171.24 Aligned_cols=118 Identities=26% Similarity=0.462 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHH
Q psy17941 527 GIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYA 606 (679)
Q Consensus 527 GIeRll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k 606 (679)
-+||++++++.+.+.+. ++.||+|+||++|+|++++++ ....+.+|++.||++|++|++|+++.++++|++
T Consensus 248 ~~~r~~~~~L~~a~~e~-------~~~LPpwLAP~qV~IIpl~ee--l~e~AlkLA~eLR~aGIrVeiDl~srSLgKQiK 318 (387)
T PRK14938 248 DVGLLVYYFLLESIRKQ-------PPTLPDWLNPIQVRILPVKKD--FLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIR 318 (387)
T ss_pred EecHHHHHHHHHhhhHH-------hCcCCCccCcceEEEEEeChH--HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Confidence 37899999998876432 589999999999999999753 778999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHH
Q psy17941 607 RTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKD 654 (679)
Q Consensus 607 ~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~ 654 (679)
+|++.|+||+||||++|+ ++|+|+||+|++++|..++++++.+.+.+
T Consensus 319 ~AdK~GaPfvIIIGedEl-e~gtVtIKdrdTgEQ~~IsLdELie~Lkk 365 (387)
T PRK14938 319 RAGTEWIPFVIIIGEREV-KTSTLTVKIRANNEQKSMTVEELVKEIKR 365 (387)
T ss_pred HHHHcCCCEEEEECchhh-hCCeEEEEECCCCceEEEeHHHHHHHHHh
Confidence 999999999999999999 79999999999999999999999887764
No 55
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.70 E-value=2e-16 Score=169.37 Aligned_cols=124 Identities=24% Similarity=0.231 Sum_probs=103.4
Q ss_pred eeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhc
Q psy17941 94 YDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAA 173 (679)
Q Consensus 94 ~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~ 173 (679)
.||+|.++.++++|++.+++.| .++||.+|.||+|++.++|..+++ + ..+.||+....
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~-~~~Gy~~i~tP~le~~~~~~~~~~-~-~~~~~~~~~d~------------------- 58 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVF-RSWGYQEIITPTLEYLDTLSAGGG-I-LNEDLFKLFDS------------------- 58 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH-HHcCCeeccCcchhhHHHhcccCC-c-chhceEEEECC-------------------
Confidence 4899999999999999999999 999999999999999999988766 3 56666653221
Q ss_pred CCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHH
Q psy17941 174 EPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVN 253 (679)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~ 253 (679)
+++...|||+.|.++.+.
T Consensus 59 --------------------------------------------------------------~g~~l~LRpD~T~~iaR~ 76 (314)
T TIGR00443 59 --------------------------------------------------------------LGRVLGLRPDMTTPIARA 76 (314)
T ss_pred --------------------------------------------------------------CCCEEeecCcCcHHHHHH
Confidence 123458999999999998
Q ss_pred HHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcc
Q psy17941 254 FKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 254 f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~ 306 (679)
+.+.+. ...+|++++++|++||+| .+..| |.|||+|+++|+|+.++..
T Consensus 77 ~~~~~~--~~~~p~r~~y~g~VfR~~-~~~~g--r~re~~Q~g~Eiig~~~~~ 124 (314)
T TIGR00443 77 VSTRLR--DRPLPLRLCYAGNVFRTN-ESGAG--RSREFTQAGVELIGAGGPA 124 (314)
T ss_pred HHHhcc--cCCCCeEEEEeceEeecC-CCcCC--CcccccccceEEeCCCCch
Confidence 875432 356899999999999999 66677 9999999999999987664
No 56
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.68 E-value=5.5e-16 Score=161.64 Aligned_cols=118 Identities=24% Similarity=0.281 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCch
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQS 180 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~ 180 (679)
++++++|.+.+++.| .++||.+|.||+|++.++|..+| ++...+.||+....
T Consensus 2 ~~~~~~l~~~l~~~f-~~~Gy~~v~tP~le~~~~~~~~~-~~~~~~~~~~~~d~-------------------------- 53 (261)
T cd00773 2 AALRRYIEDTLREVF-ERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRFKDK-------------------------- 53 (261)
T ss_pred hHHHHHHHHHHHHHH-HHcCCEEeeccceeeHHHhcccc-cccccceEEEEECC--------------------------
Confidence 578999999999999 99999999999999999998876 55666777763221
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhh
Q psy17941 181 VKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEF 260 (679)
Q Consensus 181 ~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~ 260 (679)
++....|||+.|..+.+.+.+...
T Consensus 54 -------------------------------------------------------~g~~l~LRpd~T~~iaR~~a~~~~- 77 (261)
T cd00773 54 -------------------------------------------------------GGRDLALRPDLTAPVARAVAENLL- 77 (261)
T ss_pred -------------------------------------------------------CCCEEEeCCCCcHHHHHHHHhcCc-
Confidence 122458999999999988876421
Q ss_pred ccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcc
Q psy17941 261 NSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 261 ~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~ 306 (679)
...+|+++|++|+|||+| .+..| |.|||+|+++|+|+.++..
T Consensus 78 -~~~~p~k~~y~g~vfR~e-~~~~g--~~re~~Q~g~Eiig~~~~~ 119 (261)
T cd00773 78 -SLPLPLKLYYIGPVFRYE-RPQKG--RYREFYQVGVEIIGSDSPL 119 (261)
T ss_pred -cCCCCeEEEEEcCEEecC-CCCCC--CccceEEeceeeeCCCChH
Confidence 136999999999999999 45456 9999999999999985543
No 57
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.66 E-value=3.4e-16 Score=137.47 Aligned_cols=92 Identities=32% Similarity=0.536 Sum_probs=86.7
Q ss_pred eEEEEecCCC-CChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCce
Q psy17941 562 KASILPLSSN-PEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQ 640 (679)
Q Consensus 562 ~V~Vi~l~~~-~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q 640 (679)
||+|+|++.+ ++..++|..|++.||++||++++|+++.++++||++|++.|+||+||||++|+ ++|+|+||+|+++++
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~-~~~~v~vk~~~~~~~ 79 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKEL-ENGTVTVKDRDTGEQ 79 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHH-HTTEEEEEETTTTEE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhH-hCCEEEEEECCCCcE
Confidence 6899999872 34789999999999999999999999999999999999999999999999999 799999999999999
Q ss_pred EEEehHHHHHHHHH
Q psy17941 641 VRVKVNEVASVIKD 654 (679)
Q Consensus 641 ~~v~i~el~~~l~~ 654 (679)
..|++++++++|++
T Consensus 80 ~~v~~~el~~~l~~ 93 (94)
T PF03129_consen 80 ETVSLEELIEYLKE 93 (94)
T ss_dssp EEEECCHHHHHHHH
T ss_pred EEEEHHHHHHHHhh
Confidence 99999999999875
No 58
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.63 E-value=1.9e-15 Score=132.48 Aligned_cols=92 Identities=22% Similarity=0.420 Sum_probs=84.9
Q ss_pred CceEEEEecCCC-CChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCC
Q psy17941 560 PLKASILPLSSN-PEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSM 638 (679)
Q Consensus 560 P~~V~Vi~l~~~-~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~ 638 (679)
|++|+|+|+..+ ++...++.+++..||++|++|++|++..++++++++|++.|+||+|+||++|+ ++|+|+||+|.++
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~~e~-~~~~v~vk~~~~~ 79 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSA-AEGIVEIKVRKTG 79 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECCchh-hCCEEEEEECCCC
Confidence 789999998752 24678999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred ceEEEehHHHHHHH
Q psy17941 639 TQVRVKVNEVASVI 652 (679)
Q Consensus 639 ~q~~v~i~el~~~l 652 (679)
++..++++++.+.+
T Consensus 80 ~~~~~~~~~~~~~l 93 (94)
T cd00861 80 EKEEISIDELLEFL 93 (94)
T ss_pred cceEEeHHHHHHhh
Confidence 99999999987765
No 59
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.57 E-value=1.3e-14 Score=152.78 Aligned_cols=119 Identities=11% Similarity=0.009 Sum_probs=95.2
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHL 168 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~ 168 (679)
.++|+.|++|.-+++++.|++.+++.| ..+||.+|.||+|+..+++... -...||+...
T Consensus 7 ~p~G~rD~lp~e~~~~~~i~~~l~~vf-~~~Gy~~I~tP~lE~~e~~~~~-----~~~~~y~~~D--------------- 65 (281)
T PRK12293 7 IPQGSKLYFGKSAKLKREIENVASEIL-YENGFEEIVTPFFSYHQHQSIA-----DEKELIRFSD--------------- 65 (281)
T ss_pred CCCcccccCcHHHHHHHHHHHHHHHHH-HHcCCeEeeccceeehhhhccc-----chhceEEEEC---------------
Confidence 379999999999999999999999999 9999999999999988877320 1133443111
Q ss_pred HHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchh
Q psy17941 169 EKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQ 248 (679)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aq 248 (679)
.+++...||||.|.
T Consensus 66 ------------------------------------------------------------------~~g~~l~LRpD~T~ 79 (281)
T PRK12293 66 ------------------------------------------------------------------EKNHQISLRADSTL 79 (281)
T ss_pred ------------------------------------------------------------------CCCCEEEECCcCCH
Confidence 02345689999999
Q ss_pred hHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCc
Q psy17941 249 GIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTD 305 (679)
Q Consensus 249 gi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~ 305 (679)
+|.|.+...+ +....|+++|++|++||+|. |||+|+++|.++.++.
T Consensus 80 ~iaR~~a~~~--~~~~~p~r~~Y~g~vfR~~~---------rEf~Q~GvEliG~~~~ 125 (281)
T PRK12293 80 DVVRIVTKRL--GRSTEHKKWFYIQPVFRYPS---------NEIYQIGAELIGEEDL 125 (281)
T ss_pred HHHHHHHHhc--ccCCCceeEEEeccEEecCC---------CcccccCeEeeCCCCH
Confidence 9999876432 22468999999999999982 8999999999998764
No 60
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.56 E-value=3.3e-14 Score=123.47 Aligned_cols=90 Identities=22% Similarity=0.420 Sum_probs=83.6
Q ss_pred CceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCc
Q psy17941 560 PLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMT 639 (679)
Q Consensus 560 P~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~ 639 (679)
|++|+|++.+. +....+.++++.||+.|++|++|++..++++|+++|++.|+|++|+||.+++ .++++++++|.+++
T Consensus 1 p~~v~ii~~~~--~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e~-~~~~v~lk~~~~~~ 77 (91)
T cd00860 1 PVQVVVIPVTD--EHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEV-ETGTVSVRTRDGGD 77 (91)
T ss_pred CeEEEEEeeCc--hHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchh-hCCEEEEEECCCCc
Confidence 78999999864 3788999999999999999999999999999999999999999999999999 79999999999999
Q ss_pred eEEEehHHHHHHH
Q psy17941 640 QVRVKVNEVASVI 652 (679)
Q Consensus 640 q~~v~i~el~~~l 652 (679)
+..++++++.+.|
T Consensus 78 ~~~~~~~~~~~~~ 90 (91)
T cd00860 78 LGSMSLDEFIEKL 90 (91)
T ss_pred cceEcHHHHHHHh
Confidence 9999999887654
No 61
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.49 E-value=3.2e-13 Score=117.91 Aligned_cols=92 Identities=29% Similarity=0.527 Sum_probs=83.1
Q ss_pred CceEEEEecCC-CCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCC
Q psy17941 560 PLKASILPLSS-NPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSM 638 (679)
Q Consensus 560 P~~V~Vi~l~~-~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~ 638 (679)
|++|+|+|.+. .+.....+..+++.||+.|+++++|+++.++++++++|++.|+||+++||++++ ++++|++|+|+++
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~~e~-~~~~v~i~~~~~~ 79 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDEL-ENGKVTVKSRDTG 79 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECCChh-hCCEEEEEECCCC
Confidence 67899999764 113678999999999999999999998899999999999999999999999999 7999999999999
Q ss_pred ceEEEehHHHHHHH
Q psy17941 639 TQVRVKVNEVASVI 652 (679)
Q Consensus 639 ~q~~v~i~el~~~l 652 (679)
++..++++++.+.+
T Consensus 80 ~~~~~~~~~~~~~i 93 (94)
T cd00738 80 ESETLHVDELPEFL 93 (94)
T ss_pred ceeEEEHHHHHhhc
Confidence 99999999886653
No 62
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.35 E-value=4.2e-12 Score=135.67 Aligned_cols=125 Identities=25% Similarity=0.244 Sum_probs=95.0
Q ss_pred cceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHh
Q psy17941 92 GQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKL 171 (679)
Q Consensus 92 G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~ 171 (679)
|+.||+|.-++.++.|++.+++.| .++||.+|.||+|++.+++...+..+ .+.||+....
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f-~~~Gy~~i~~P~le~~~~~~~~~~~~--~~~~~~~~D~----------------- 60 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVF-ERHGYEEIETPLLEYYELFLDKSGED--SDNMYRFLDR----------------- 60 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHH-HHTT-EE-B--SEEEHHHHHCHSSTT--GGCSEEEECT-----------------
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHH-HHcCCEEEECCeEeecHHhhhccccc--hhhhEEEEec-----------------
Confidence 899999999999999999999999 99999999999999999998654322 3455552110
Q ss_pred hcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHH
Q psy17941 172 AAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIF 251 (679)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~ 251 (679)
++...-|||+.|.++.
T Consensus 61 ----------------------------------------------------------------~G~~l~LR~D~T~~ia 76 (311)
T PF13393_consen 61 ----------------------------------------------------------------SGRVLALRPDLTVPIA 76 (311)
T ss_dssp ----------------------------------------------------------------TSSEEEE-SSSHHHHH
T ss_pred ----------------------------------------------------------------CCcEeccCCCCcHHHH
Confidence 2334589999999999
Q ss_pred HHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcc
Q psy17941 252 VNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 252 ~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~ 306 (679)
+.+.+... ...|.++|++|++||++ ++..| |.|||+|+++++|+.+...
T Consensus 77 R~~a~~~~---~~~~~r~~y~g~vfR~~-~~~~g--~~re~~Q~g~Eiig~~~~~ 125 (311)
T PF13393_consen 77 RYVARNLN---LPRPKRYYYIGPVFRYE-RPGKG--RPREFYQCGFEIIGSSSLE 125 (311)
T ss_dssp HHHHHCCG---SSSSEEEEEEEEEEEEE-TTTTT--BESEEEEEEEEEESSSSHH
T ss_pred HHHHHhcC---cCCCceEEEEcceeecc-ccCCC--CCceeEEEEEEEECCCCHH
Confidence 88887532 57899999999999999 77777 9999999999999988543
No 63
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.14 E-value=3.1e-10 Score=97.52 Aligned_cols=88 Identities=20% Similarity=0.335 Sum_probs=79.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCceE
Q psy17941 562 KASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQV 641 (679)
Q Consensus 562 ~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~ 641 (679)
+|+|++.+. +....+.+++..||+.|++|+++....++++++++|.+.|+|+++++|+++. .+++++++++.++++.
T Consensus 3 ~v~i~~~~~--~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~~~~-~~~~~~i~~~~~~~~~ 79 (91)
T cd00859 3 DVYVVPLGE--GALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDEL-AAGVVTVKDLETGEQE 79 (91)
T ss_pred cEEEEEcCh--HHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcHHHH-hCCcEEEEECCCCCcE
Confidence 688888764 3678899999999999999999987789999999999999999999999888 7899999999999999
Q ss_pred EEehHHHHHHH
Q psy17941 642 RVKVNEVASVI 652 (679)
Q Consensus 642 ~v~i~el~~~l 652 (679)
.++++++.+.+
T Consensus 80 ~~~~~~~~~~~ 90 (91)
T cd00859 80 TVALDELVEEL 90 (91)
T ss_pred EEeHHHHHHHh
Confidence 99998887654
No 64
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.05 E-value=1.1e-09 Score=119.87 Aligned_cols=107 Identities=22% Similarity=0.215 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhhhhCceEeecCcccchhhhhh-cCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhh
Q psy17941 104 KTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKA-SGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVK 182 (679)
Q Consensus 104 ~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~-SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~ 182 (679)
.++|.+.+++.| .++||.+|.||+|++.+++.. +|.. -.+.||+...
T Consensus 7 ~~~i~~~i~~~f-~~~Gy~~I~tP~lE~~e~~~~~~g~~--~~~~~~~f~D----------------------------- 54 (373)
T PRK12295 7 SAAAAEALLASF-EAAGAVRVDPPILQPAEPFLDLSGED--IRRRIFVTSD----------------------------- 54 (373)
T ss_pred HHHHHHHHHHHH-HHcCCEEeeCCccccHHHhhhccCch--hhcceEEEEC-----------------------------
Confidence 458899999999 999999999999999999864 3422 1123333110
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhcc
Q psy17941 183 EECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNS 262 (679)
Q Consensus 183 ~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~ 262 (679)
+ +++...|||+.|.++.+.+... +
T Consensus 55 ---------------------------------------------------~-~G~~l~LRpD~T~piaR~~~~~----~ 78 (373)
T PRK12295 55 ---------------------------------------------------E-NGEELCLRPDFTIPVCRRHIAT----A 78 (373)
T ss_pred ---------------------------------------------------C-CCCEEeeCCCCcHHHHHHHHHc----C
Confidence 0 2345689999999999876542 2
Q ss_pred CCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCC
Q psy17941 263 GRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPT 304 (679)
Q Consensus 263 ~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~ 304 (679)
...|+++|++|++||+| .| |.|||+|+++|+|+.++
T Consensus 79 ~~~p~R~~Y~g~VfR~~----~g--r~rEf~Q~GvEiiG~~~ 114 (373)
T PRK12295 79 GGEPARYAYLGEVFRQR----RD--RASEFLQAGIESFGRAD 114 (373)
T ss_pred CCCCeEEEEEccEEECC----CC--CCCcceEeeEEeeCCCC
Confidence 46799999999999999 56 89999999999999654
No 65
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.02 E-value=1.5e-09 Score=108.38 Aligned_cols=113 Identities=35% Similarity=0.503 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhh
Q psy17941 103 LKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVK 182 (679)
Q Consensus 103 l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~ 182 (679)
+++++++.+++.+ ...||+||.||+|++.+.+...|+.. +.+ .
T Consensus 1 ~~~~~~~~~r~~l-~~~Gf~Ev~t~~l~~~~~~~~~~~~~---~~~-~-------------------------------- 43 (211)
T cd00768 1 IRSKIEQKLRRFM-AELGFQEVETPIVEREPLLEKAGHEP---KDL-L-------------------------------- 43 (211)
T ss_pred CHHHHHHHHHHHH-HHcCCEEeEcceecHHHHHHHcCccH---hhe-e--------------------------------
Confidence 3678999999999 88999999999999998887665431 000 0
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhcc
Q psy17941 183 EECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNS 262 (679)
Q Consensus 183 ~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~ 262 (679)
+.. |..+...+|||..+.++..++++++
T Consensus 44 --------------------------~~~----------------------~~~~~~~~LR~s~~~~l~~~~~~n~---- 71 (211)
T cd00768 44 --------------------------PVG----------------------AENEEDLYLRPTLEPGLVRLFVSHI---- 71 (211)
T ss_pred --------------------------eee----------------------cCCCCEEEECCCCcHHHHHHHHhhc----
Confidence 000 1123456999999999999998765
Q ss_pred CCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCc
Q psy17941 263 GRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTD 305 (679)
Q Consensus 263 ~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~ 305 (679)
+++|++++++|+|||+|.+ ..++.|++||+|.+++.++.+.+
T Consensus 72 ~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~~~ 113 (211)
T cd00768 72 RKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGEDGE 113 (211)
T ss_pred ccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCCch
Confidence 6789999999999999965 33357999999999999998764
No 66
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=98.95 E-value=5.2e-09 Score=114.26 Aligned_cols=111 Identities=20% Similarity=0.303 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCccc--ccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCch
Q psy17941 103 LKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDR--FADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQS 180 (679)
Q Consensus 103 l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~--f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~ 180 (679)
-++.|++.+|+.| ...||+||.||+|++++.+...|+.+. ..+.||+
T Consensus 241 ~~~~Led~IRevf-vg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk------------------------------ 289 (453)
T TIGR02367 241 YLGKLERDITKFF-VDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR------------------------------ 289 (453)
T ss_pred HHHHHHHHHHHHH-HHCCCEEEECCeecchHHHHhhcCccCCcccccceE------------------------------
Confidence 4678999999999 899999999999999888877665421 0111111
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhh
Q psy17941 181 VKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEF 260 (679)
Q Consensus 181 ~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~ 260 (679)
. +...+|||+.+.++++.+.++.
T Consensus 290 -------------------------------------------------~------ee~lvLRPdLTPsLaR~La~N~-- 312 (453)
T TIGR02367 290 -------------------------------------------------V------DKNFCLRPMLAPNLYNYLRKLD-- 312 (453)
T ss_pred -------------------------------------------------e------cCceEecccCHHHHHHHHHHhh--
Confidence 0 0124999999999887665431
Q ss_pred ccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCC
Q psy17941 261 NSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPT 304 (679)
Q Consensus 261 ~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~ 304 (679)
....+|+++|+||+|||+| .+..| |+|||+|+++++++...
T Consensus 313 ~~l~~PqKIFEIGkVFR~E-~~~~t--hlREF~QL~~eIaG~~a 353 (453)
T TIGR02367 313 RALPDPIKIFEIGPCYRKE-SDGKE--HLEEFTMLNFCQMGSGC 353 (453)
T ss_pred hhccCCeeEEEEcCeEecC-CCCCC--CcCeEEEEEEEEECCCC
Confidence 1146899999999999999 67777 99999999999997644
No 67
>PRK07080 hypothetical protein; Validated
Probab=98.90 E-value=5.6e-08 Score=101.89 Aligned_cols=164 Identities=17% Similarity=0.194 Sum_probs=109.4
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCce
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMV 149 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~ 149 (679)
+.+-|...|...|+ |+.|+|-....=-.|...|...+...- ...|+.++..|-+.|.+.|.+||++..|-..|.
T Consensus 21 ~~~~l~~~g~~~~~-----g~~g~ygrs~~fe~v~~~ld~~i~~lg-~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~l~~ 94 (317)
T PRK07080 21 FRDELFDAGLLIPT-----GVDGLYGRSGLFEDVVEALDALITRLG-ADQGAEVLRFPPVMSRAEFERSGYLKSFPQLAG 94 (317)
T ss_pred HHHHHHhcCceecc-----CCCccccccHHHHHHHHHHHHHHHHhc-cccCCceeeCCCCCCHHHHHhcChhhhCcccce
Confidence 33344556777676 589999988887788888888777655 566799999999999999999999999998887
Q ss_pred e-eCCCCcccchhh--hHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhh
Q psy17941 150 K-DLKTGECFRLDH--LIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNL 226 (679)
Q Consensus 150 ~-d~~~~~~~r~d~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnl 226 (679)
. +.-+|. ..+| ++++. . +.+.. ...++.|
T Consensus 95 ~V~~~~g~--~~e~~~ll~~~-------------------------~--~~~~~-----~~~l~~~-------------- 126 (317)
T PRK07080 95 TVHSFCGN--EAEHRRLLACL-------------------------D--RGEDW-----TESQKPT-------------- 126 (317)
T ss_pred eecCCCCC--CHHHHHHHHHH-------------------------H--hcCch-----hhhcCCC--------------
Confidence 5 221111 0111 22111 0 00111 0112222
Q ss_pred hhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCC---eeeecccccccCCCCCCCCcccccceeEeeEEEEeCC
Q psy17941 227 MFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLP---FAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDP 303 (679)
Q Consensus 227 mf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP---~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~ 303 (679)
..-|.|-.+-.++..+.+- ..+| ..+--.|.|||+|- ..++-|+.+|+|-|+..+++|
T Consensus 127 ------------~~vL~pAaCyP~Yp~l~~~-----g~lp~~g~~~dv~g~CFR~E~--s~dl~Rl~~F~mrE~V~iGt~ 187 (317)
T PRK07080 127 ------------DVVLTPAACYPVYPVLARR-----GALPADGRLVDVASYCFRHEP--SLDPARMQLFRMREYVRIGTP 187 (317)
T ss_pred ------------cceecccccccchhhhccC-----cccCCCCcEEEeeeeeeccCC--CCCcHHHhheeeeEEEEecCH
Confidence 2356666666666555421 1233 45667799999993 468999999999999999998
Q ss_pred Ccc
Q psy17941 304 TDK 306 (679)
Q Consensus 304 ~~~ 306 (679)
++.
T Consensus 188 e~v 190 (317)
T PRK07080 188 EQI 190 (317)
T ss_pred HHH
Confidence 754
No 68
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=98.84 E-value=1.5e-08 Score=110.87 Aligned_cols=108 Identities=21% Similarity=0.332 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCccc--ccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchh
Q psy17941 104 KTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDR--FADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSV 181 (679)
Q Consensus 104 ~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~--f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~ 181 (679)
.+.|++.+|+.| ...||+||.||+|++.+.|...|++.. +.+.||+
T Consensus 206 ~s~Le~aIR~~f-~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~------------------------------- 253 (417)
T PRK09537 206 LGKLERDITKFF-VDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR------------------------------- 253 (417)
T ss_pred HHHHHHHHHHHH-HHCCCEEEECCeeecHHHHHHhCCCCcccchhhhee-------------------------------
Confidence 567888889988 789999999999999999988877521 1111111
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhc
Q psy17941 182 KEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFN 261 (679)
Q Consensus 182 ~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~ 261 (679)
. +...+|||..+.+++..+..+. .
T Consensus 254 ------------------------------------------------i------deel~LRpsLtPsLlr~la~n~--k 277 (417)
T PRK09537 254 ------------------------------------------------V------DKNFCLRPMLAPGLYNYLRKLD--R 277 (417)
T ss_pred ------------------------------------------------e------CCceEehhhhHHHHHHHHHhhh--h
Confidence 0 0135999999999887665331 1
Q ss_pred cCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 262 SGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 262 ~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
...+|+++++||+|||+| .+..+ ++|||+|.++..++.
T Consensus 278 ~~~~P~RIFEIG~VFR~E-~~g~~--hlrEf~Ql~~~iiGs 315 (417)
T PRK09537 278 ILPDPIKIFEIGPCYRKE-SDGKE--HLEEFTMVNFCQMGS 315 (417)
T ss_pred cccCCeeEEEEeceEecC-CCCCC--CcceEEEEEEEEeCC
Confidence 246899999999999999 45445 899999999998753
No 69
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=98.77 E-value=1.4e-08 Score=110.05 Aligned_cols=155 Identities=22% Similarity=0.222 Sum_probs=115.8
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc-CCcccccCCceeeCCCCcccchhhhHHHHH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS-GHVDRFADLMVKDLKTGECFRLDHLIKAHL 168 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S-Gh~~~f~d~m~~d~~~~~~~r~d~l~~~~~ 168 (679)
+.|+.|.+|.-++.+.+|.+.+++.| .+.||..|+||+|++.+.+..- |+-- ...||+..
T Consensus 6 p~g~rd~Lp~e~~~~~~i~~~l~~~f-~~~Gy~~v~tP~lE~~d~~l~~~g~~l--~~~~f~l~---------------- 66 (390)
T COG3705 6 PEGIRDVLPLEARRKEEIRDQLLALF-RAWGYERVETPTLEPADPLLDGAGEDL--RRRLFKLE---------------- 66 (390)
T ss_pred CCcchhcchhHHhhHHHHHHHHHHHH-HHhCCccccccccchhhhhhhccchhh--hhhheEEe----------------
Confidence 68999999999999999999999999 9999999999999999998643 3320 01122210
Q ss_pred HHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchh
Q psy17941 169 EKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQ 248 (679)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aq 248 (679)
...|+ ..-||||.|.
T Consensus 67 ----------------------------------------------------------------d~~g~-~l~LRpD~T~ 81 (390)
T COG3705 67 ----------------------------------------------------------------DETGG-RLGLRPDFTI 81 (390)
T ss_pred ----------------------------------------------------------------cCCCC-eEEecccccH
Confidence 11233 3789999999
Q ss_pred hHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhc
Q psy17941 249 GIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQ 328 (679)
Q Consensus 249 gi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~ 328 (679)
.|.|.-...+ ...|.++++.|++||.. +.+.| |..||+|..+|.|+.+...+ |+++..+.-.+-.
T Consensus 82 pVaR~~~~~~----~~~P~Rl~Y~G~Vfr~~-~~~~g--~~~Ef~QaGiEllG~~~~~A--------DaEvi~la~~~L~ 146 (390)
T COG3705 82 PVARIHATLL----AGTPLRLSYAGKVFRAR-EGRHG--RRAEFLQAGIELLGDDSAAA--------DAEVIALALAALK 146 (390)
T ss_pred HHHHHHHHhc----CCCCceeeecchhhhcc-hhccC--cccchhhhhhHHhCCCcchh--------hHHHHHHHHHHHH
Confidence 9998887654 33899999999999998 88888 88899999999999966653 5565222222222
Q ss_pred cCCCCceEEeecccc
Q psy17941 329 MDGKPAERITIGEAV 343 (679)
Q Consensus 329 ~~g~~~~~~~~~~a~ 343 (679)
..|..+..+.+++++
T Consensus 147 ~~gl~~~~l~LG~~g 161 (390)
T COG3705 147 ALGLADLKLELGHAG 161 (390)
T ss_pred HcCCcCeEEEeccHH
Confidence 233555578888654
No 70
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.71 E-value=1.3e-07 Score=107.36 Aligned_cols=155 Identities=14% Similarity=0.074 Sum_probs=99.3
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccch-----hhhhhcCCcccccCCceeeCCCCcccchhhhH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLE-----PVLKASGHVDRFADLMVKDLKTGECFRLDHLI 164 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~-----~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~ 164 (679)
..| .++.|-.+..++.+++.+++.| ...||.||.+|+++.. .+|..--|-.+-.-+.|.. +.+. +..+.
T Consensus 222 ~~~-~~~~~~~~~~~~~~~~~~~~~f-~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~-~~~~---~~~~~ 295 (489)
T PRK04172 222 APP-PKIYPGKKHPYREFIDEVRDIL-VEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYL-KYPG---IGDLP 295 (489)
T ss_pred CCC-CCCCCCCCChHHHHHHHHHHHH-HHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEE-CCcc---cccCc
Confidence 344 7888999999999999999999 9999999999999976 6666544443221111111 0000 00000
Q ss_pred HHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHH---HhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccc
Q psy17941 165 KAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVL---KKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGY 241 (679)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~---~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~y 241 (679)
++....+ ++.+-..-..| ++.-|+ +.+.+...
T Consensus 296 ---------------------------------~~~~~~v~~~he~g~~~~~~~--------~~y~~~----~~~~~~~~ 330 (489)
T PRK04172 296 ---------------------------------EELVERVKEVHEHGGDTGSRG--------WGYKWD----EDIAKRLV 330 (489)
T ss_pred ---------------------------------HHHHHHHHHHHhccCCCCCcc--------ccCCcc----hhhhhccc
Confidence 1111111 11110000000 000111 22456789
Q ss_pred cCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCC
Q psy17941 242 LRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDP 303 (679)
Q Consensus 242 LRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~ 303 (679)
|||+||+++.+.+... +..|+++++||+|||+| ++..+ |+|||+|.++...+.+
T Consensus 331 LR~~~T~~~~r~l~~~-----~~~p~rlFeiGrVFR~e-~~d~~--~l~Ef~ql~~~i~G~~ 384 (489)
T PRK04172 331 LRTHTTALSARYLASR-----PEPPQKYFSIGRVFRPD-TIDAT--HLPEFYQLEGIVMGED 384 (489)
T ss_pred cccCChHHHHHHHHhc-----CCCCeEEEEecceEcCC-CCCcc--cCCchheEEEEEEeCC
Confidence 9999999999888752 56899999999999999 66667 6799999999999874
No 71
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.44 E-value=1.2e-06 Score=91.99 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchh
Q psy17941 102 ALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSV 181 (679)
Q Consensus 102 ~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~ 181 (679)
.-+++|++.+++.| .++||.+|.||+|+..+++..+|+. -.+.+++
T Consensus 8 ~~~~~ie~~l~~~f-~~~GY~~I~tP~~E~~d~~~~~~~~--~~~~~~~------------------------------- 53 (272)
T PRK12294 8 IALKESETAFLKYF-NKADYELVDFSVIEKLDWKQLNHED--LQQMGER------------------------------- 53 (272)
T ss_pred HHHHHHHHHHHHHH-HHcCCeEeeCCcchhHHhhhccccc--hhhhhee-------------------------------
Confidence 34788999999999 9999999999999999998443321 0111111
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhc
Q psy17941 182 KEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFN 261 (679)
Q Consensus 182 ~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~ 261 (679)
.|+ +.+++..-|||+.|..|.|.....
T Consensus 54 --------------------------------------------~~~-----~~~Gr~laLRpD~T~~iAR~~a~~---- 80 (272)
T PRK12294 54 --------------------------------------------SFW-----QHEHQIYALRNDFTDQLLRYYSMY---- 80 (272)
T ss_pred --------------------------------------------eee-----cCCCCEEEEcCCCCHHHHHHHHhc----
Confidence 011 124567799999999999865422
Q ss_pred cCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCC
Q psy17941 262 SGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDP 303 (679)
Q Consensus 262 ~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~ 303 (679)
..-|.+++++|++||++ ++|+|+++|.++..
T Consensus 81 -~~~~~Rl~Y~g~VfR~~----------~~~~Q~GvEliG~~ 111 (272)
T PRK12294 81 -PTAATKVAYAGLIIRNN----------EAAVQVGIENYAPS 111 (272)
T ss_pred -CCCCceEEEeccEeccC----------CCcceeceEEECCC
Confidence 12367999999999998 24899999999844
No 72
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.40 E-value=3.3e-06 Score=94.45 Aligned_cols=64 Identities=22% Similarity=0.106 Sum_probs=51.9
Q ss_pred cccccCccchhhHHHHHHHhhhh---ccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCC
Q psy17941 238 IKGYLRPETAQGIFVNFKRLLEF---NSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPT 304 (679)
Q Consensus 238 ~~~yLRPE~aqgi~~~f~~~l~~---~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~ 304 (679)
...-|||.||....+.+..+... +....|++++++|+||||| .+..+ |++||+|+|+...+...
T Consensus 326 ~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d-~~Dat--H~~eFhQ~Eg~vi~~~~ 392 (494)
T PTZ00326 326 RKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNE-TLDAT--HLAEFHQVEGFVIDRNL 392 (494)
T ss_pred ccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCC-CCCCC--cCceeEEEEEEEEeCCC
Confidence 46789999999999888765321 1112499999999999999 78888 99999999999887654
No 73
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=98.36 E-value=1.1e-07 Score=98.96 Aligned_cols=74 Identities=27% Similarity=0.401 Sum_probs=68.3
Q ss_pred cccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccCCceeeeeccccchhhHhHHHHHh
Q psy17941 350 NETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKAT 423 (679)
Q Consensus 350 ~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s 423 (679)
++++.+|++....++.++|++++.+++++|.+.+++||+.+|||.++..++||.|++|+++|++|++..|.+.+
T Consensus 148 ~e~~~~v~~~~~~~l~~~G~~~~~~r~~~~~~~e~a~ya~~~~d~~~~~~~~w~e~~Gi~~~~~~~l~~~~~e~ 221 (254)
T cd00774 148 HPWFDYWADQRLKWLPKFAQSPENLRLTDHEKEELAHYANETLDYFYAFPHGFLELEGIANRGDRFLQHHPNES 221 (254)
T ss_pred hHHHHHHHHHHHHHHHHcCCCccceEEEecccHhhhhhhHHHHHHHHHHhhhHHHHcCCCcchhHHHhCChhhh
Confidence 36788899999999999999999999999999999999999999999999999999999999999999877544
No 74
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.28 E-value=2.9e-05 Score=83.31 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=42.0
Q ss_pred cccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 240 GYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 240 ~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
..||+=|+.+.++...+ ...|+++..+|.|||++ ..-.- ++.+|+|.|+-+.+.
T Consensus 165 ~lLRThTSp~qir~L~~------~~~Pirif~~G~VyR~D-~~Dat--H~~~FhQleglvvd~ 218 (339)
T PRK00488 165 LLLRTHTSPVQIRTMEK------QKPPIRIIAPGRVYRND-SDDAT--HSPMFHQVEGLVVDK 218 (339)
T ss_pred ceeeccCcHHHHHHHHh------cCCCeEEEEeeeEEEcC-CCCcc--cCcceeeEEEEEEeC
Confidence 37888888888766543 57899999999999999 32222 678999999877654
No 75
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.05 E-value=4e-06 Score=89.72 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
.+++..|++.+|+.| ...||.||.||+|+...
T Consensus 5 l~~r~~i~~~ir~~f-~~~gf~EV~TP~l~~~~ 36 (306)
T PRK09350 5 LLKRAKIIAEIRRFF-ADRGVLEVETPILSQAT 36 (306)
T ss_pred HHHHHHHHHHHHHHH-HHCCCEEEECCeEeccc
Confidence 578899999999999 89999999999998744
No 76
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.05 E-value=6.3e-06 Score=86.57 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 102 ALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 102 ~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
+++..|.+.+|+.| .+.||.||.||+|+..
T Consensus 2 ~~rs~i~~~ir~~f-~~~gf~ev~tP~l~~~ 31 (269)
T cd00669 2 KVRSKIIKAIRDFM-DDRGFLEVETPMLQKI 31 (269)
T ss_pred cHHHHHHHHHHHHH-HHCCCEEEECCEEecc
Confidence 57889999999999 9999999999999865
No 77
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.8e-06 Score=94.40 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=107.5
Q ss_pred ccccHH-HHHHHHHHhccccCCCccccccccCCCCCCCceEEEEecCCCC-----ChHHHHHHHHHHHHHCCCeEEEeCC
Q psy17941 524 PSFGIG-RIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNP-----EFQPFIKMLSSELSQNGISFKVDDS 597 (679)
Q Consensus 524 ~s~GIe-Rll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~-----e~~~~a~~l~~~Lr~~Gi~v~~D~~ 597 (679)
+|+|+. |.+.+++-.+.|+.| +.+|+.+||.+|.++|..... ....++..++..|...+++++.|++
T Consensus 255 ~s~~~s~r~~~~~i~i~GDn~G-------~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~ 327 (500)
T COG0442 255 TSYGISTRIIGAAILIHGDNEG-------LVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDR 327 (500)
T ss_pred cceEEEeeeeeEEEEEecCCCC-------ccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEecccc
Confidence 367765 777666665566666 889999999999999864321 2457788888888889999999955
Q ss_pred -CCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCc--eEEEehHHHHHH-HHHHHhc-----ccchHHH
Q psy17941 598 -GGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMT--QVRVKVNEVASV-IKDLSLA-----KITWEDV 665 (679)
Q Consensus 598 -~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~--q~~v~i~el~~~-l~~l~~~-----~~~~~~~ 665 (679)
....|.||..++-+|+|.++-+|.+.. ++.++++.++++.+ ...++....++. +..+++. ..-|...
T Consensus 328 ~~~~~G~kl~~~e~ieVghif~lG~kys-e~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~~gi~w~~a 403 (500)
T COG0442 328 SPDGPGFKLNIWEGIEVGHIFELGTKYS-EAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDENGIIWPKA 403 (500)
T ss_pred CCCCCCceeeeeeccccCEEEEECchhh-hhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhcccccCccccc
Confidence 689999999999999999999999999 89999999999998 677888888887 6666552 3456643
No 78
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=2.8e-05 Score=86.63 Aligned_cols=35 Identities=40% Similarity=0.589 Sum_probs=31.1
Q ss_pred eeecccccccCCCCCCCCcccccceeEeeEEE-EeCCCc
Q psy17941 268 AAAQIGNAFRNEISPRSGLIRVREFTMAEIEH-FCDPTD 305 (679)
Q Consensus 268 ~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~-F~~~~~ 305 (679)
++|||.+|||+| -.|.- |.-||||.|+|. |++.++
T Consensus 211 RYyQIarCFRDE-DlRaD--RQPEFTQiD~EmSF~~~ed 246 (585)
T COG0173 211 RYYQIARCFRDE-DLRAD--RQPEFTQIDLEMSFVDEED 246 (585)
T ss_pred ceeeeeeeeccc-ccccc--cCCcceeEeEEeecCCHHH
Confidence 699999999999 88888 999999999997 777654
No 79
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=97.97 E-value=7.2e-05 Score=78.52 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=83.2
Q ss_pred CceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEE-eCCCCCHHHHHHHHHHhCCCEEEEEeCCC-----CCCCCeEEEE
Q psy17941 560 PLKASILPLSSNPEFQPFIKMLSSELSQNGISFKV-DDSGGSIGKRYARTDEIAIPFGITIDFDT-----LKEPHSVTLR 633 (679)
Q Consensus 560 P~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~-D~~~~slgkq~k~Ad~~Gip~~IiVG~~E-----l~~~g~Vtlr 633 (679)
-.+|+|+..+.. -++....+|++.||++||++++ .+...++...+.+|...||+|+|||-+.+ -...+.|.||
T Consensus 5 RCDVLV~S~~~~-~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK 83 (273)
T PF12745_consen 5 RCDVLVCSFGPS-SLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLKVK 83 (273)
T ss_pred cceEEEEeCChh-HHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceEEe
Confidence 468999888764 3558999999999999999999 34456999999999999999999998854 1023469999
Q ss_pred ECCCCceEEEehHHHHHHHHHHHhcc
Q psy17941 634 ERDSMTQVRVKVNEVASVIKDLSLAK 659 (679)
Q Consensus 634 ~r~t~~q~~v~i~el~~~l~~l~~~~ 659 (679)
++.++.+..|+.+||+.+|...+..+
T Consensus 84 ~l~~~~e~dv~~~eLv~~l~~ei~~r 109 (273)
T PF12745_consen 84 SLEKKKETDVDRDELVDWLQQEIRER 109 (273)
T ss_pred ccCCCcccccCHHHHHHHHHHHHHhh
Confidence 99999999999999999999887643
No 80
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00011 Score=75.70 Aligned_cols=44 Identities=30% Similarity=0.530 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCC
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADL 147 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~ 147 (679)
..-+++|++.+|+.| .+.|+.||+||+|....+-.. |+..|.-+
T Consensus 16 ll~Ra~i~~~iR~FF-~erg~lEVeTp~Ls~a~vtd~--hL~~F~Te 59 (322)
T COG2269 16 LLKRAAIIAAIRRFF-AERGVLEVETPALSVAPVTDI--HLHPFETE 59 (322)
T ss_pred HHHHHHHHHHHHHHH-HHcCceEecchHhhcCCCCcc--ceeeeeeE
Confidence 456788999999999 999999999999987766543 56556543
No 81
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=97.53 E-value=0.00025 Score=74.97 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhCceEeecCcccchhh
Q psy17941 102 ALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPV 134 (679)
Q Consensus 102 ~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v 134 (679)
+++..|++.+|+.| .+.||.||.||+|++...
T Consensus 2 ~~Rs~i~~~iR~f~-~~~gfiEV~TP~L~~~~~ 33 (280)
T cd00777 2 RLRSRVIKAIRNFL-DEQGFVEIETPILTKSTP 33 (280)
T ss_pred chHHHHHHHHHHHH-HHCCCEEEeCCeeecCCC
Confidence 57889999999999 899999999999986543
No 82
>KOG2411|consensus
Probab=97.50 E-value=0.00032 Score=76.93 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHHHhhhhCceEeecCccc
Q psy17941 99 MGCALKTNMLSAWRQFFVLEEQMLEVDCSILT 130 (679)
Q Consensus 99 ~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~ 130 (679)
.-.+++.++...+|+.++.++||.||+||.|.
T Consensus 176 ~nLrlRS~~v~~iR~yl~n~~GFvevETPtLF 207 (628)
T KOG2411|consen 176 NNLRLRSNVVKKIRRYLNNRHGFVEVETPTLF 207 (628)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeeeccCcchh
Confidence 35689999999999999779999999999973
No 83
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.44 E-value=0.0054 Score=65.42 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=41.7
Q ss_pred cccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEe
Q psy17941 240 GYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFC 301 (679)
Q Consensus 240 ~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~ 301 (679)
.+|||-|+.|+.++..++ .+ .|++++++|++||++. .... ++.||+|.++-+-.
T Consensus 129 ~vLRtsl~p~ll~~l~~N----~~-~pirlFEiGrVfr~d~-~d~~--~~pef~ql~gl~~~ 182 (294)
T TIGR00468 129 LLLRTHTTAVQLRTMEEN----EK-PPIRIFSPGRVFRNDT-VDAT--HLPEFHQVEGLVID 182 (294)
T ss_pred cceecccHHHHHHHHHhc----CC-CCceEEEecceEEcCC-CCCc--cCChhhEEEEEEEC
Confidence 489999999999887754 23 7999999999999983 2222 34599999988544
No 84
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0097 Score=63.90 Aligned_cols=108 Identities=19% Similarity=0.308 Sum_probs=67.8
Q ss_pred ccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCC-CCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHH
Q psy17941 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNE-ISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQM 319 (679)
Q Consensus 241 yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E-~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~ 319 (679)
-||--|++-..+...+. ..-|+++..+|+|||+| ....+ +.+|+|.|.-+.+..-. +.+
T Consensus 172 lLRTHTs~vq~R~l~~~-----~~~P~k~~~~grvyR~D~~DaTH----s~~FhQiEGlvvd~~~s--------~~~--- 231 (335)
T COG0016 172 LLRTHTSPVQARTLAEN-----AKIPIKIFSPGRVYRNDTVDATH----SPEFHQIEGLVVDKNIS--------FAD--- 231 (335)
T ss_pred eecccCcHhhHHHHHhC-----CCCCceEecccceecCCCCCccc----chheeeeEEEEEeCCcc--------HHH---
Confidence 56666776666555442 23399999999999999 44444 48999999944433221 111
Q ss_pred HHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhcc
Q psy17941 320 MVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTS 399 (679)
Q Consensus 320 ~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~ 399 (679)
....++.|+..++-....+|||... --|+.-.+.++++++
T Consensus 232 ------------------------------------Lkg~L~~f~~~~fg~~~~vRfrpsy----FPFTEPS~Evdv~~~ 271 (335)
T COG0016 232 ------------------------------------LKGTLEEFAKKFFGEDVKVRFRPSY----FPFTEPSAEVDVYCP 271 (335)
T ss_pred ------------------------------------HHHHHHHHHHHhcCCCcceEeecCC----CCCCCCeEEEEEEEc
Confidence 2334566777776444467777642 113333456666666
Q ss_pred --CCceeeeec
Q psy17941 400 --YGWVECVGC 408 (679)
Q Consensus 400 --~g~~e~~~~ 408 (679)
.||+|+.||
T Consensus 272 ~~~~WlEi~G~ 282 (335)
T COG0016 272 GCGGWLEILGC 282 (335)
T ss_pred CCCCEEEEecc
Confidence 569999887
No 85
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=97.37 E-value=0.00045 Score=79.66 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccc
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTL 131 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~ 131 (679)
-.+++..|...+|+.| ...||.||+||+|++
T Consensus 137 ~lr~Rs~i~~~iR~ff-~~~gFiEVeTP~L~~ 167 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFL-DQQGFLEIETPMLTK 167 (583)
T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEEECCeecc
Confidence 4578999999999999 889999999999986
No 86
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=97.33 E-value=0.00065 Score=53.87 Aligned_cols=42 Identities=45% Similarity=0.478 Sum_probs=37.7
Q ss_pred HHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHH
Q psy17941 13 LRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDER 54 (679)
Q Consensus 13 l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~ 54 (679)
|++++++||+.||+||.++++.++|.++|+.|.+++++++..
T Consensus 1 L~~~I~~QG~~VR~LKa~ka~k~~i~~aV~~Ll~LK~~~~~~ 42 (56)
T PF00458_consen 1 LEAQIAAQGDKVRKLKAEKADKEEIDAAVAKLLELKAELKEL 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999999999765
No 87
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=97.29 E-value=0.0019 Score=67.14 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=45.0
Q ss_pred CcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 237 LIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 237 ~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
.....||+-|+.++.+.+ ...+..|+++..+|+|||+|..... .+.+|+|.|+-+.+.
T Consensus 78 ~~~~vLRThts~~~~~~l-----~~~~~~p~kif~iG~VyR~D~~D~t---h~~~f~Qleg~~~~~ 135 (247)
T PF01409_consen 78 EDYSVLRTHTSPGQLRTL-----NKHRPPPIKIFEIGKVYRRDEIDAT---HLPEFHQLEGLVVDK 135 (247)
T ss_dssp CSSEEE-SSTHHHHHHHH-----TTTSHSSEEEEEEEEEESSSCSBSS---BESEEEEEEEEEEET
T ss_pred chhhhhhhhhhHHHHHHH-----HHhcCCCeEEEecCceEecCCcccc---cCccceeEeeEEEec
Confidence 456799999999998777 2236789999999999999954443 467999999976543
No 88
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.24 E-value=0.00071 Score=78.42 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
=.+++..|...+|+.| .+.||.||.||+|++.
T Consensus 140 ~l~~Rs~i~~~iR~ff-~~~gFiEV~TP~L~~s 171 (588)
T PRK00476 140 NLKLRSKVTSAIRNFL-DDNGFLEIETPILTKS 171 (588)
T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEEECCeeecC
Confidence 4568899999999999 8899999999999874
No 89
>PLN02903 aminoacyl-tRNA ligase
Probab=97.23 E-value=0.00094 Score=77.57 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHHHHHhhh-hCceEeecCcccchh
Q psy17941 99 MGCALKTNMLSAWRQFFVLE-EQMLEVDCSILTLEP 133 (679)
Q Consensus 99 ~G~~l~~~i~~~~r~~~~~~-~g~~ev~~P~l~~~~ 133 (679)
.-.+++..|...+|+.| .. .||.||+||+|....
T Consensus 201 ~~lr~Rs~i~~~iR~fl-~~~~gFiEVeTPiL~~st 235 (652)
T PLN02903 201 ANLRLRHRVVKLIRRYL-EDVHGFVEIETPILSRST 235 (652)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCCeEEEECCeeccCC
Confidence 35678999999999999 75 899999999998653
No 90
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.21 E-value=0.00088 Score=78.55 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 99 MGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 99 ~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
.-.+++..|.+.+|+.| .+.||.||+||+|++.
T Consensus 154 ~~lr~Rs~i~~~iR~fl-~~~gFiEVeTPiL~~s 186 (706)
T PRK12820 154 DHLAKRHRIIKCARDFL-DSRGFLEIETPILTKS 186 (706)
T ss_pred HHHHHHHHHHHHHHHHH-HHCCCEEEeCCccccC
Confidence 35678999999999999 8999999999999873
No 91
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.05 E-value=0.0015 Score=70.64 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccc
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTL 131 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~ 131 (679)
=++++..|.+.+|+.| ...||.||.||+|+.
T Consensus 23 ~~~~rs~i~~~ir~~f-~~~gf~eV~TP~l~~ 53 (322)
T cd00776 23 IFRIRSEVLRAFREFL-RENGFTEVHTPKITS 53 (322)
T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEeeCCceec
Confidence 4678999999999999 999999999999987
No 92
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.04 E-value=0.0019 Score=73.54 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
.+++..|...+|+.| ...||.||.||+|.+.
T Consensus 172 ~r~Rs~i~~~iR~f~-~~~gF~EVeTPiL~~~ 202 (491)
T PRK00484 172 FRKRSKIISAIRRFL-DNRGFLEVETPMLQPI 202 (491)
T ss_pred HHHHHHHHHHHHHHH-HHCCCEEEECCceecc
Confidence 458889999999999 8899999999999854
No 93
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.04 E-value=0.0011 Score=76.53 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
.+++..|++.+|+.| ...||.||+||+|.+.
T Consensus 253 fr~RS~Ii~aiR~Ff-~~rGFlEVeTPiL~~~ 283 (585)
T PTZ00417 253 FITRTKIINYLRNFL-NDRGFIEVETPTMNLV 283 (585)
T ss_pred HHHHHHHHHHHHHHH-HHCCeEEEeCCeeecc
Confidence 347889999999999 8999999999999886
No 94
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.03 E-value=0.0021 Score=69.61 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
.+++..|...+|+.| ...||.||.||+|.+..
T Consensus 8 l~~Rs~i~~~iR~ff-~~~gf~EV~TP~L~~~~ 39 (329)
T cd00775 8 FIVRSKIISYIRKFL-DDRGFLEVETPMLQPIA 39 (329)
T ss_pred HHHHHHHHHHHHHHH-HHCCCEEEECCccccCC
Confidence 568889999999999 89999999999998664
No 95
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=96.99 E-value=0.01 Score=66.64 Aligned_cols=59 Identities=25% Similarity=0.169 Sum_probs=44.7
Q ss_pred cccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEe
Q psy17941 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFC 301 (679)
Q Consensus 238 ~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~ 301 (679)
...-||.=||+..++.+..+-. ....|++++.+|+|||||. --.. .+.||+|.|.-..+
T Consensus 316 ~~~vLRTHTTa~s~r~L~~~~~--~~~~p~k~fsigrVfR~d~-iDat--H~~eFhQ~EG~vvd 374 (492)
T PLN02853 316 NKNLLRTHTTAVSSRMLYKLAQ--KGFKPKRYFSIDRVFRNEA-VDRT--HLAEFHQVEGLVCD 374 (492)
T ss_pred cccccCCCCCHHHHHHHHHhhc--cCCCCcEEEeccceecCCC-CCcc--cCccceeEEEEEEe
Confidence 4568999999999888775421 2247999999999999993 2222 56899999997664
No 96
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=96.96 E-value=0.0022 Score=48.06 Aligned_cols=41 Identities=44% Similarity=0.488 Sum_probs=38.0
Q ss_pred HHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
Q psy17941 12 PLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLD 52 (679)
Q Consensus 12 ~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le 52 (679)
.|..++.+|++.||+||.++++++.|.++|+.|-+++++|.
T Consensus 2 ~l~~~I~~QGe~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 2 KLEEAVKLQGELVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred cHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999998875
No 97
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.93 E-value=0.003 Score=69.88 Aligned_cols=60 Identities=18% Similarity=0.334 Sum_probs=46.4
Q ss_pred ccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 239 KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 239 ~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
+.-||+=|+.+.++....+.. ...+|++++.+|.|||+|...-.. ++++|+|.|.-.-+.
T Consensus 182 ~~lLRTHTTpgqirtL~~L~~--~~~~PiRIFsIGRVfRrD~~~DaT--Hl~eFhQlEGLVVde 241 (533)
T TIGR00470 182 TLTLRSHMTSGWFITLSSIID--KRKLPLKLFSIDRCFRREQREDRS--HLMTYHSASCVVVDE 241 (533)
T ss_pred CcccccCChhHHHHHHHHHhh--cCCCCeEEEeeeeEEecCCCCCCc--cCceeeeEEEEEECC
Confidence 568999999999988875432 357899999999999999432222 679999999866543
No 98
>PRK06462 asparagine synthetase A; Reviewed
Probab=96.85 E-value=0.0031 Score=68.49 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
=.+++..|.+.+|+.| .+.||.||.||+|++.
T Consensus 29 il~~Rs~i~~~iR~ff-~~~~f~EV~TP~l~~~ 60 (335)
T PRK06462 29 VLKVQSSILRYTREFL-DGRGFVEVLPPIISPS 60 (335)
T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEEeCCeEecC
Confidence 4678999999999999 8999999999999875
No 99
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=96.72 E-value=0.0035 Score=70.55 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHHHhhhhCceEeecCcccc
Q psy17941 99 MGCALKTNMLSAWRQFFVLEEQMLEVDCSILTL 131 (679)
Q Consensus 99 ~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~ 131 (679)
.=.+++..|.+.+|+.| ...||.||.||+|..
T Consensus 134 ~~l~~Rs~i~~~iR~ff-~~~gf~EV~TP~L~~ 165 (437)
T PRK05159 134 AIFKIRSEVLRAFREFL-YENGFTEIFTPKIVA 165 (437)
T ss_pred HHHHHHHHHHHHHHHHH-HHCCCEEEeCCcccc
Confidence 45678999999999999 899999999999964
No 100
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=96.72 E-value=0.0026 Score=69.05 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
=.+++..|.+.+|+.| ...||.||.||+|++..
T Consensus 21 ~~~~rs~i~~~ir~ff-~~~~f~Ev~tP~l~~~~ 53 (335)
T PF00152_consen 21 ILRIRSAILQAIREFF-DKRGFIEVDTPILTSST 53 (335)
T ss_dssp HHHHHHHHHHHHHHHH-HHTT-EEE---SEESSS
T ss_pred HHHHHHHHHHHHHHHH-HhCCceEEcCceeeccc
Confidence 4678999999999999 88899999999998864
No 101
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=96.69 E-value=0.0044 Score=70.79 Aligned_cols=30 Identities=23% Similarity=0.585 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccc
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTL 131 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~ 131 (679)
.+++..|+..+|+.| ...||.||.||+|.+
T Consensus 184 ~r~Rs~i~~~iR~f~-~~~gFiEVeTPiL~~ 213 (505)
T PRK12445 184 FVVRSKILAAIRQFM-VARGFMEVETPMMQV 213 (505)
T ss_pred HHHHHHHHHHHHHHH-HHCCCEEeeCCeeEe
Confidence 558889999999999 899999999999976
No 102
>PLN02502 lysyl-tRNA synthetase
Probab=96.67 E-value=0.0036 Score=71.99 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 102 ALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 102 ~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
+++..|...+|+.| ...||.||.||+|.+.
T Consensus 230 r~Rs~i~~~iR~fl-~~~gF~EVeTPiL~~~ 259 (553)
T PLN02502 230 RTRAKIISYIRRFL-DDRGFLEVETPMLNMI 259 (553)
T ss_pred HHHHHHHHHHHHHH-HHCCCEEEECCeeecc
Confidence 58889999999999 8999999999999864
No 103
>cd00939 MetRS_RNA MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=96.64 E-value=0.0046 Score=46.42 Aligned_cols=40 Identities=38% Similarity=0.288 Sum_probs=36.7
Q ss_pred HHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhH
Q psy17941 14 RAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDE 53 (679)
Q Consensus 14 ~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~ 53 (679)
..++.+||+.||+||.++++++.+..+|+.|-++++++..
T Consensus 2 ~~~I~~QGekVR~LKa~ka~k~~i~~eV~~LL~LK~~~k~ 41 (45)
T cd00939 2 EKEVAEQGNKVRKLKASKADKSVWQPEVNKLLDLKKQLAL 41 (45)
T ss_pred hHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999988764
No 104
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=96.63 E-value=0.002 Score=68.94 Aligned_cols=31 Identities=35% Similarity=0.639 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 102 ALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 102 ~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
+++..|++.+|+.| .+.||.||.||+|++..
T Consensus 2 ~~rs~i~~~ir~~f-~~~gF~EV~TP~l~~~~ 32 (304)
T TIGR00462 2 RARARLLAAIRAFF-AERGVLEVETPLLSPAP 32 (304)
T ss_pred hHHHHHHHHHHHHH-HHCCCEEEECCeEecCC
Confidence 67899999999999 99999999999999864
No 105
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=96.62 E-value=0.0049 Score=71.79 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccc
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTL 131 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~ 131 (679)
.+++..|++.+|+.| ...||.||+||+|.+
T Consensus 233 fr~Rs~I~~aiR~ff-~~~gFlEVeTPiL~~ 262 (659)
T PTZ00385 233 IKKRHVMLQALRDYF-NERNFVEVETPVLHT 262 (659)
T ss_pred HHHHHHHHHHHHHHH-HHCCCEEeeCCEeec
Confidence 458889999999999 899999999999965
No 106
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=96.55 E-value=0.0049 Score=70.30 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
.+++..|...+|+.| ...||.||.||+|.+.
T Consensus 172 ~r~Rs~i~~~iR~fl-~~~gF~EVeTP~L~~~ 202 (496)
T TIGR00499 172 FLVRSKIIKAIRRFL-DDRGFIEVETPMLQVI 202 (496)
T ss_pred HHHHHHHHHHHHHHH-HHCcCEEEeCCeeecC
Confidence 347888999999999 8899999999999864
No 107
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=96.51 E-value=0.0075 Score=54.39 Aligned_cols=51 Identities=33% Similarity=0.395 Sum_probs=47.4
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHH
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERE 55 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~ 55 (679)
..+.+++.|++++|..|+.|++++++|.+.++++++++.++++++.++.+.
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999998874
No 108
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=96.45 E-value=0.0047 Score=76.46 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
.+++..|++.+|+.| .+.||.||+||+|.+.
T Consensus 770 ~r~Rs~i~~~iR~fl-~~~gFlEVeTPiL~~~ 800 (1094)
T PRK02983 770 LRARSAVVRAVRETL-VARGFLEVETPILQQV 800 (1094)
T ss_pred HHHHHHHHHHHHHHH-HHCCCEEEeCCEeecc
Confidence 447888999999999 8899999999999743
No 109
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=96.39 E-value=0.048 Score=55.57 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=43.0
Q ss_pred cccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCC
Q psy17941 240 GYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDP 303 (679)
Q Consensus 240 ~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~ 303 (679)
++|||.+..|+..+..++ ..|+++++||++||++- ...+ +++||+|.++...+.+
T Consensus 60 ~~LR~sLlp~LL~~l~~N------~~~~~lFEiG~Vf~~~~-~~~~--~~~E~~~l~~~~~g~~ 114 (218)
T cd00496 60 LLLRTHTSAVQARALAKL------KPPIRIFSIGRVYRNDE-IDAT--HLPEFHQIEGLVVDKG 114 (218)
T ss_pred EEEeccCcHHHHHHHHhc------CCCeeEEEEcCeEECCC-CCCC--cCCccEEEEEEEECCC
Confidence 599999999999666553 66999999999999973 2223 3459999999887743
No 110
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=96.38 E-value=0.0089 Score=67.05 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHHHhhhhCceEeecCcccc
Q psy17941 99 MGCALKTNMLSAWRQFFVLEEQMLEVDCSILTL 131 (679)
Q Consensus 99 ~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~ 131 (679)
.=.+++..|.+.+|+.| ...||.||.||+|..
T Consensus 131 ~~~r~Rs~i~~~iR~ff-~~~gf~EV~TP~L~~ 162 (428)
T TIGR00458 131 AIFRIRSGVLESVREFL-AEEGFIEVHTPKLVA 162 (428)
T ss_pred HHHHHHHHHHHHHHHHH-HHCCCEEEeCCceec
Confidence 34778999999999999 899999999999974
No 111
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=96.23 E-value=0.01 Score=67.02 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 99 MGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 99 ~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
.=.+++..|...+|+.| ...||.||.||+|+..
T Consensus 131 ~~l~~Rs~i~~~iR~f~-~~~gf~EV~TP~L~~~ 163 (450)
T PRK03932 131 AVMRIRNTLAQAIHEFF-NENGFVWVDTPIITAS 163 (450)
T ss_pred HHHHHHHHHHHHHHHHH-HHCCCEEecCCceecc
Confidence 35678999999999999 8999999999999975
No 112
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=95.83 E-value=0.018 Score=66.25 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
.+++..|...+|+.| ...||.||.||+|....
T Consensus 213 ~r~rs~i~~~~R~fl-~~~gFiEV~TP~L~~~~ 244 (550)
T PTZ00401 213 FRLQSRVCQYFRQFL-IDSDFCEIHSPKIINAP 244 (550)
T ss_pred HHHHHHHHHHHHHHH-HHCCCEEEeCCccccCC
Confidence 457888999999999 88999999999998754
No 113
>KOG1035|consensus
Probab=95.75 E-value=0.91 Score=55.95 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=62.3
Q ss_pred CCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEe-CCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEEC--
Q psy17941 559 APLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVD-DSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRER-- 635 (679)
Q Consensus 559 aP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D-~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r-- 635 (679)
...+|.|+..+. .+...+..|++.||+.||.+++- +-..+......+|++--+-+++++- ++...+|..
T Consensus 1258 ~~cdvlics~g~--~l~t~~~~l~~~LWs~gI~a~i~~~~s~~~~e~~e~~~~~~i~~iliv~------n~~~~vks~~~ 1329 (1351)
T KOG1035|consen 1258 SSCDVLICSRGS--GLLTQRMELVAKLWSKGIKAEIVPDPSPSLEELTEYANEHEITCILIVT------NQKEKVKSFEL 1329 (1351)
T ss_pred ccccEEEEecCC--chHHHHHHHHHHHHHcCcccceeeCCCcchHHHHHHHhcCceEEEEEEe------cceeeechhHH
Confidence 357888888774 37788999999999999999976 4467788888888776666666663 345555543
Q ss_pred CCCceEEEehHHHHHHHHHH
Q psy17941 636 DSMTQVRVKVNEVASVIKDL 655 (679)
Q Consensus 636 ~t~~q~~v~i~el~~~l~~l 655 (679)
+-.....+-..++++++.+.
T Consensus 1330 e~~se~~~~~~elv~f~~~~ 1349 (1351)
T KOG1035|consen 1330 ERKSEKVVGRTELVEFLLQA 1349 (1351)
T ss_pred hhhhhhhhhHHHHHHHHHHh
Confidence 33333445556777776544
No 114
>PLN02850 aspartate-tRNA ligase
Probab=95.48 E-value=0.028 Score=64.65 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 102 ALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 102 ~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
+++..|.+.+|+.| ...||.||.||+|...
T Consensus 226 rirs~i~~~~R~fl-~~~gF~EV~TP~L~~~ 255 (530)
T PLN02850 226 RIQSQVCNLFREFL-LSKGFVEIHTPKLIAG 255 (530)
T ss_pred HHHHHHHHHHHHHH-HHCCcEEEeCCccccC
Confidence 47788999999999 8999999999999653
No 115
>PLN02603 asparaginyl-tRNA synthetase
Probab=95.47 E-value=0.03 Score=64.59 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
.+++..|...+|+.| ...||.||.||+|+..
T Consensus 226 ~RiRS~i~~air~ff-~~~gF~eV~TPiLt~s 256 (565)
T PLN02603 226 ARVRNALAYATHKFF-QENGFVWVSSPIITAS 256 (565)
T ss_pred HHHHHHHHHHHHHHH-HHCCCEEEECCeeccc
Confidence 478999999999999 8899999999999864
No 116
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=95.44 E-value=0.033 Score=62.96 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
=.+++..|...+|+.| ...||.||.||+|+...
T Consensus 135 ~lr~Rs~i~~~~r~~~-~~~gf~eV~TP~l~~~~ 167 (453)
T TIGR00457 135 VMRVRNALSQAIHRYF-QENGFTWVSPPILTSND 167 (453)
T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEecCCeEeecC
Confidence 3589999999999999 88999999999998643
No 117
>cd00935 GlyRS_RNA GlyRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of GlyRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix-turn-helix structure , which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=94.93 E-value=0.077 Score=41.23 Aligned_cols=46 Identities=76% Similarity=1.120 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHH
Q psy17941 10 LAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERE 55 (679)
Q Consensus 10 ~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~ 55 (679)
+..|++.+..+++.||.||+++++..++..++..|++.+..++...
T Consensus 1 l~~l~~~v~~qg~~vR~lk~~~a~~~~~~~a~~~L~~~k~~l~~~~ 46 (51)
T cd00935 1 LAPLRAAVKEQGDLVRKLKEEGAPDVDIKKAVAELKARKKLLEDKE 46 (51)
T ss_pred ChHHHHHHHHhhHHHHhhccccCcHHHHHHHHHHHHHHHHHhhhHh
Confidence 4678999999999999999988888999999999999988877654
No 118
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=94.58 E-value=0.072 Score=61.61 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 99 MGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 99 ~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
.=++++..|...+|+.| ...||.+|.||+|+...
T Consensus 213 avlRiRs~l~~a~r~ff-~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 213 SVIRIRNALAIATHLFF-QSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHH-HHCCCEEeeCCeecccC
Confidence 35789999999999999 88999999999997754
No 119
>PLN02532 asparagine-tRNA synthetase
Probab=94.40 E-value=0.079 Score=61.67 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
-++++..|...+|+.| ...||.||.||+|+...
T Consensus 234 ilRiRS~i~~aiR~ff-~~~GFiEV~TPiLT~s~ 266 (633)
T PLN02532 234 VTRVRSALTHATHTFF-QDHGFLYVQVPIITTTD 266 (633)
T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEeeCCeecccC
Confidence 5679999999999999 88999999999998754
No 120
>PLN02221 asparaginyl-tRNA synthetase
Probab=93.86 E-value=0.13 Score=59.64 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
=++++..|...+|+.| ...||.||.||+|+...
T Consensus 170 i~RiRS~i~~aiR~ff-~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 170 VARIRNALAFATHSFF-QEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEEeCCeecccc
Confidence 4679999999999999 88999999999998754
No 121
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=93.42 E-value=0.087 Score=59.06 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 103 LKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 103 l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
.+.+|++.+|+.+ ...||.||+||+|.+-
T Consensus 182 ~Rs~ii~~iR~fl-~~~gFlEVETP~lq~i 210 (502)
T COG1190 182 KRSKIIRAIREFL-DDRGFLEVETPMLQPI 210 (502)
T ss_pred HHHHHHHHHHHHH-HHCCCeEecccccccc
Confidence 6778999999988 8999999999999763
No 122
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=91.64 E-value=0.31 Score=54.28 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccchhh
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPV 134 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v 134 (679)
=+++++.|...+++.| ...||.||.||+|+....
T Consensus 133 v~kirs~i~~a~~eff-~~~gF~eV~tP~i~~~~~ 166 (435)
T COG0017 133 VFKIRSSILRAIREFF-YENGFTEVHTPIITASAT 166 (435)
T ss_pred HHhHHHHHHHHHHHHH-HhCCcEEecCceEeccCC
Confidence 4678999999999999 999999999999988643
No 123
>cd01200 WHEPGMRS_RNA EPRS-like_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=91.07 E-value=0.39 Score=35.57 Aligned_cols=39 Identities=44% Similarity=0.576 Sum_probs=34.0
Q ss_pred HHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhH
Q psy17941 15 AAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDE 53 (679)
Q Consensus 15 a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~ 53 (679)
.++..||..||.||.++++..++..++..|.+++.++..
T Consensus 2 ~~i~~qg~~vR~lK~~~a~k~~~~~~v~~L~~lK~~~~~ 40 (42)
T cd01200 2 EKIAEQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKE 40 (42)
T ss_pred cHHHHhHHHHHhccccCCCHHHHHHHHHHHHHHHHHhhh
Confidence 467889999999999889999999999999998887653
No 124
>cd00936 WEPRS_RNA WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=88.52 E-value=0.68 Score=35.85 Aligned_cols=40 Identities=38% Similarity=0.485 Sum_probs=34.9
Q ss_pred HHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhH
Q psy17941 14 RAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDE 53 (679)
Q Consensus 14 ~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~ 53 (679)
-.++..|+..||.||++++++.++..++..|.+++.++..
T Consensus 2 ~~~i~~qge~VR~LK~~~a~k~~~~~av~~Ll~lK~~~k~ 41 (50)
T cd00936 2 YKKIAAQGDLVRELKAKKAPKEEIDAAVKKLLALKADYKE 41 (50)
T ss_pred hHHHHhchHHHhhhccccCchHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999888999999999999998887754
No 125
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=88.20 E-value=0.44 Score=51.42 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=35.6
Q ss_pred ccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCC
Q psy17941 239 KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPR 283 (679)
Q Consensus 239 ~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr 283 (679)
...||--+|.|-|.....+++ ..++|++++.|-+|||+|.+--
T Consensus 182 tlTLRSHMTsGWFItLs~i~~--r~~~PlklFSIDRCFRREQ~ED 224 (536)
T COG2024 182 TLTLRSHMTSGWFITLSEILK--REDPPLKLFSIDRCFRREQRED 224 (536)
T ss_pred ceehhhhcccceeeeHHHHHh--ccCCCceeeehhHHhhhhhhcc
Confidence 457888899999988777664 5789999999999999996553
No 126
>PLN02788 phenylalanine-tRNA synthetase
Probab=86.41 E-value=1.8 Score=48.00 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=39.4
Q ss_pred ccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCC-CCCCCcccccceeEeeEEEEeCCC
Q psy17941 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEI-SPRSGLIRVREFTMAEIEHFCDPT 304 (679)
Q Consensus 241 yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~-~pr~Gl~R~REF~q~e~~~F~~~~ 304 (679)
-||.=|++...+.+.+ ..| ++...|.|||+|. -.. -+.+|+|+|+-....++
T Consensus 130 lLRTHTSa~q~~~l~~-------~~~-~~~~~g~VyRrD~iD~t----H~p~FhQ~EG~~v~~~~ 182 (402)
T PLN02788 130 VLRCHTSAHQAELLRA-------GHT-HFLVTGDVYRRDSIDAT----HYPVFHQMEGVRVFSPE 182 (402)
T ss_pred cccCCCcHHHHHHHHh-------CCC-cEEEEeeEeecCCCCcc----cCccceeEEEEEEeccc
Confidence 6788899988877764 123 8999999999982 333 34789999998776544
No 127
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=83.28 E-value=7.8 Score=45.14 Aligned_cols=60 Identities=10% Similarity=-0.019 Sum_probs=44.6
Q ss_pred CcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 237 LIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 237 ~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
...++|||-...|+..+..++. ++..|++++++|++|+.+-.... ..+|+++..+-..+.
T Consensus 412 ~e~svLRtsLlpgLL~~~~~N~---~~~~~~~lFEiG~Vf~~~~~~~~---~~~e~~~l~~~~~g~ 471 (552)
T PRK09616 412 EDYTVVRTSLLPSLLEFLSNNK---HREYPQKIFEIGDVVLIDESTET---GTRTERKLAAAIAHS 471 (552)
T ss_pred cchheEeccchHHHHHHHHhcc---CCCCCeeEEEeeEEEecCCcccc---CcchhhEEEEEEECC
Confidence 3456999999999999888765 35679999999999987621111 236888887776664
No 128
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=82.39 E-value=3.1 Score=41.50 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=30.8
Q ss_pred cccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCC
Q psy17941 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNE 279 (679)
Q Consensus 238 ~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E 279 (679)
...+|||-...|+..+..+++. .+..|++++++|++|..+
T Consensus 52 e~~~lR~sLlp~LL~~~~~N~~--~~~~~~~lFEiG~vf~~~ 91 (198)
T cd00769 52 EYSVLRTSLLPGLLDALARNLN--RKNKPLRLFEIGRVFLKD 91 (198)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc--CCCCCEeEEEeEeEEecC
Confidence 3458888888888877776642 345799999999999764
No 129
>KOG0554|consensus
Probab=66.95 E-value=7.2 Score=42.82 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=31.8
Q ss_pred eCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 96 FGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 96 ~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
+...-+|+++.+.-...+.| ...+|..|.||+|+..+
T Consensus 127 ~~~av~RvRs~~~~a~h~ff-q~~~F~~i~tPiiTt~D 163 (446)
T KOG0554|consen 127 KVGAVLRVRSALAFATHSFF-QSHDFTYINTPIITTND 163 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHcCceEecCcEeeccC
Confidence 44456889999999999988 99999999999998753
No 130
>KOG1885|consensus
Probab=56.82 E-value=9.2 Score=42.83 Aligned_cols=30 Identities=20% Similarity=0.485 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccc
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTL 131 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~ 131 (679)
.+++.+|+.++|+.+ ...||.||+||+|..
T Consensus 225 f~~RakII~~iRkfl-d~rgFlEVETPmmn~ 254 (560)
T KOG1885|consen 225 FRIRAKIISYIRKFL-DSRGFLEVETPMMNM 254 (560)
T ss_pred HHHHHHHHHHHHHHh-hhcCceEecchhhcc
Confidence 457888999999987 999999999999954
No 131
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.51 E-value=56 Score=31.71 Aligned_cols=69 Identities=26% Similarity=0.316 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHc------CCChHHHHHHHHHHHHHHHHhhHHHhhcCCCCCCCChHHHHHHHHH
Q psy17941 8 AELAPLRAAVKEQGDIVRALKAE------GAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKMEDLLKR 76 (679)
Q Consensus 8 ~~~~~l~a~~~~~~~~v~~lk~~------~~~~~~i~~~v~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~l~~r 76 (679)
.++..|+.+..++.+.++.|... --+.+++...+.+|.+++..++.....+.....+++.++...+.+.
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~ 153 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKE 153 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 34555555555555555554331 1345689999999999999888876554334444555555555544
No 132
>KOG0555|consensus
Probab=56.31 E-value=19 Score=39.55 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhh
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKA 137 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~ 137 (679)
++++..+.+.+|+|| ...||.||-.|+|....|=-+
T Consensus 243 LK~Ra~~lr~~Rd~y-~~~~ytEVtPPtmVQTQVEGG 278 (545)
T KOG0555|consen 243 LKARAALLRAMRDHY-FERGYTEVTPPTMVQTQVEGG 278 (545)
T ss_pred HHHHHHHHHHHHHHH-HhcCceecCCCceEEEEecCc
Confidence 457888999999999 899999999999998876533
No 133
>PLN03194 putative disease resistance protein; Provisional
Probab=55.29 E-value=56 Score=32.59 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=41.8
Q ss_pred CCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCC----CCCHHHHHHHHHHhCCCEEEE-EeCC
Q psy17941 559 APLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDS----GGSIGKRYARTDEIAIPFGIT-IDFD 622 (679)
Q Consensus 559 aP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~----~~slgkq~k~Ad~~Gip~~Ii-VG~~ 622 (679)
.+++|+|---+.+ .-...+..|+..|++.||+|.+|+. +.++...+..|-+ ...++|+ +.++
T Consensus 25 ~~yDVFISFrG~D-tR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIe-eSri~IvVfS~~ 91 (187)
T PLN03194 25 KPCDVFINHRGID-TKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIR-NCKVGVAVFSPR 91 (187)
T ss_pred CCCcEEEeCCCcc-ccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHH-hCeEEEEEECCC
Confidence 3689987654432 2345788999999999999999963 5567666666654 4454444 4443
No 134
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=53.35 E-value=12 Score=42.87 Aligned_cols=40 Identities=33% Similarity=0.507 Sum_probs=34.7
Q ss_pred cccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCC
Q psy17941 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNE 279 (679)
Q Consensus 238 ~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E 279 (679)
..++|||-++.|++.+..+++. .+..|++++++|+|||++
T Consensus 182 ~~svLRtSLlPGLL~tLs~Nl~--Rg~~piRLFEIGRVFr~d 221 (529)
T PRK06253 182 SRLTLRSHMTSGWFITLSSLLE--KRPLPIKLFSIDRCFRRE 221 (529)
T ss_pred ccCccccchHHHHHHHHHHHHh--CCCCCEEEEEEeeEEecC
Confidence 4679999999999999887764 467899999999999886
No 135
>KOG2784|consensus
Probab=52.26 E-value=20 Score=39.12 Aligned_cols=58 Identities=28% Similarity=0.202 Sum_probs=39.2
Q ss_pred ccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEe
Q psy17941 239 KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFC 301 (679)
Q Consensus 239 ~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~ 301 (679)
.--||--||+--.++.-++- -..--|-+++.|-++||||. --.. -+-||+|.|..+-+
T Consensus 308 KnvLRTHTTavSArmLy~LA--k~~f~p~K~FSIDrVFRNEt-vDaT--HLAEFHQVEGviad 365 (483)
T KOG2784|consen 308 KNVLRTHTTAVSARMLYRLA--KKGFKPAKYFSIDRVFRNET-VDAT--HLAEFHQVEGVIAD 365 (483)
T ss_pred HHHHhhhhHHhhHHHHHHHH--hCCCCcccccchhhhhhccc-cchH--HHHHHhhhceeeec
Confidence 33567777766555554442 12346999999999999993 2222 56899999986543
No 136
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=48.10 E-value=30 Score=40.73 Aligned_cols=33 Identities=15% Similarity=-0.040 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhCceEeecCcccchhh-hh
Q psy17941 103 LKTNMLSAWRQFFVLEEQMLEVDCSILTLEPV-LK 136 (679)
Q Consensus 103 l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v-~~ 136 (679)
-.+++.+.+|+.+ ...||+|+.|-.|++.+. +.
T Consensus 398 ~~~~~~~~iR~~l-~~~Gf~Ev~t~sl~s~~~~~~ 431 (597)
T PLN02265 398 PLNQFSDLLRAEV-AMAGFTEVLTWILCSHKENFA 431 (597)
T ss_pred HHHHHHHHHHHHH-HHCCceeeeceeeCChHHHHH
Confidence 3677888889988 889999999999998754 54
No 137
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=46.57 E-value=1.8e+02 Score=30.46 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCCCeeeecccccccCCCCCCCCc--ccccceeEeeEEEEeCCCcc
Q psy17941 263 GRLPFAAAQIGNAFRNEISPRSGL--IRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 263 ~~LP~~~~qig~~FR~E~~pr~Gl--~R~REF~q~e~~~F~~~~~~ 306 (679)
+.=|.+.|++.|+.|.- -+|-|- -|+-.++|.- ....|...
T Consensus 43 gpepw~vAYVqPsrRP~-DGRYGeNPNRLq~y~QfQ--ViiKPsP~ 85 (279)
T cd00733 43 GPEPWNVAYVEPSRRPT-DGRYGENPNRLQHYYQFQ--VIIKPSPD 85 (279)
T ss_pred CCCcceeccccCCCCCC-CCCcCCCchhhhhheeeE--EEECCCCc
Confidence 45599999999998875 666665 4666666644 34566654
No 138
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=46.27 E-value=40 Score=39.32 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=31.8
Q ss_pred CcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccC
Q psy17941 237 LIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRN 278 (679)
Q Consensus 237 ~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~ 278 (679)
...++|||-...|+..+-.+++ ++..|++++++|.+|..
T Consensus 414 ~e~s~lR~SLlp~LL~~~~~N~---~~~~~~~lFEiG~Vf~~ 452 (551)
T TIGR00471 414 LEYTIVRTSLLPGLLETLSENK---HHELPQKIFEIGDVVVK 452 (551)
T ss_pred hhhhHhHhhhHHHHHHHHHhcc---cCCCCeeEEEEEEEEEc
Confidence 3456999999999998887765 35789999999999954
No 139
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=46.25 E-value=1.7e+02 Score=30.69 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=27.8
Q ss_pred CCCCeeeecccccccCCCCCCCCc--ccccceeEeeEEEEeCCCcc
Q psy17941 263 GRLPFAAAQIGNAFRNEISPRSGL--IRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 263 ~~LP~~~~qig~~FR~E~~pr~Gl--~R~REF~q~e~~~F~~~~~~ 306 (679)
+.-|.+.+++.++.|.- -+|-|- -|+-.++|.- ....|...
T Consensus 47 gpepw~vaYvqPsRRP~-DGRYGeNPNRLq~y~QfQ--VilKPsP~ 89 (283)
T PRK09348 47 GPEPWNAAYVQPSRRPT-DGRYGENPNRLQHYYQFQ--VILKPSPD 89 (283)
T ss_pred CCCccccccccCCCCCC-CCCcCCCchhhhhheeeE--EEEcCCCc
Confidence 45699999999998875 666664 3665666543 35566654
No 140
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=44.81 E-value=2e+02 Score=30.28 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=52.4
Q ss_pred ccccHHHHHHHHHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHH
Q psy17941 524 PSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGK 603 (679)
Q Consensus 524 ~s~GIeRll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgk 603 (679)
.+||++|++..+.+.+. +-.++|-- -.+.+..+.+.+++.|+....-....+...
T Consensus 104 ~~~G~e~F~~~~~~aGv---------------------dgviipDL----P~ee~~~~~~~~~~~gi~~I~lv~PtT~~e 158 (263)
T CHL00200 104 LHYGINKFIKKISQAGV---------------------KGLIIPDL----PYEESDYLISVCNLYNIELILLIAPTSSKS 158 (263)
T ss_pred HHhCHHHHHHHHHHcCC---------------------eEEEecCC----CHHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 47899999987766542 33344411 234577889999999998887766667777
Q ss_pred HHHHHHHhCCCEEEEEeCC
Q psy17941 604 RYARTDEIAIPFGITIDFD 622 (679)
Q Consensus 604 q~k~Ad~~Gip~~IiVG~~ 622 (679)
+++...+..-.|+-+|+..
T Consensus 159 ri~~i~~~a~gFIY~vS~~ 177 (263)
T CHL00200 159 RIQKIARAAPGCIYLVSTT 177 (263)
T ss_pred HHHHHHHhCCCcEEEEcCC
Confidence 8887777666688887743
No 141
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=43.21 E-value=86 Score=29.35 Aligned_cols=59 Identities=19% Similarity=0.116 Sum_probs=41.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHC-CCeEEEe--CC----CCCHHHHHHHHHHhCCCEEEEEeC
Q psy17941 562 KASILPLSSNPEFQPFIKMLSSELSQN-GISFKVD--DS----GGSIGKRYARTDEIAIPFGITIDF 621 (679)
Q Consensus 562 ~V~Vi~l~~~~e~~~~a~~l~~~Lr~~-Gi~v~~D--~~----~~slgkq~k~Ad~~Gip~~IiVG~ 621 (679)
+|+|+...++++..+....+++.||+. |+.|.+| .. ......=+..+ ...+-++|||=.
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~-~~~ad~Vliv~S 67 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQ-IREADKVLIVCS 67 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHH-HhcCCEEEEEec
Confidence 577776666566778899999999999 9999999 22 11333333333 456777777766
No 142
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=43.19 E-value=2.3e+02 Score=29.88 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=27.3
Q ss_pred CCCCeeeecccccccCCCCCCCCc--ccccceeEeeEEEEeCCCcc
Q psy17941 263 GRLPFAAAQIGNAFRNEISPRSGL--IRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 263 ~~LP~~~~qig~~FR~E~~pr~Gl--~R~REF~q~e~~~F~~~~~~ 306 (679)
+.=|.+.+++.++.|-- -+|-|- -|+-.++|.- ....|...
T Consensus 44 gpepw~vAYVqPsRRP~-DGRYGeNPNRLq~yyQfQ--VilKPsP~ 86 (293)
T TIGR00388 44 GPEPWAVAYVEPSRRPT-DGRYGENPNRLQHYYQFQ--VVIKPSPD 86 (293)
T ss_pred CCCcceeccccCCCCCC-CCCCCCCchhhhheeeeE--EEECCCCc
Confidence 45599999999998875 566554 3555555543 35566654
No 143
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=40.48 E-value=14 Score=40.85 Aligned_cols=18 Identities=6% Similarity=-0.016 Sum_probs=11.7
Q ss_pred eeeccceeE-Eeeeecccc
Q psy17941 496 FVLTKDMIS-IKKSTKTFH 513 (679)
Q Consensus 496 f~i~~~~v~-~~~y~~~~~ 513 (679)
+.+++.+++ ++|||..++
T Consensus 306 v~~D~~~vrgl~YYTGiVF 324 (373)
T PRK12295 306 LRFSASFGRPLDYYTGFVF 324 (373)
T ss_pred EEEecccccCCccccceEE
Confidence 556666776 677766665
No 144
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=39.83 E-value=1e+02 Score=31.95 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=41.7
Q ss_pred CCceEEEEecCCC----------CChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEE
Q psy17941 559 APLKASILPLSSN----------PEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFG 616 (679)
Q Consensus 559 aP~~V~Vi~l~~~----------~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~ 616 (679)
.|.+|+++|-..+ .........+.+.|+++||+|.+..... ..|++.|.+.|++++
T Consensus 83 kP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~--~~qi~~A~~~GAd~V 148 (237)
T TIGR00559 83 KPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD--KDQISAAAEVGADRI 148 (237)
T ss_pred CCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEE
Confidence 5789999996432 1123556778899999999998764322 578999999999976
No 145
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=39.02 E-value=1.6e+02 Score=26.13 Aligned_cols=36 Identities=14% Similarity=0.434 Sum_probs=29.9
Q ss_pred eEEEEecC-CCCChHHHHHHHHHHHHHCCCeEEEeCC
Q psy17941 562 KASILPLS-SNPEFQPFIKMLSSELSQNGISFKVDDS 597 (679)
Q Consensus 562 ~V~Vi~l~-~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~ 597 (679)
++.|+|++ .+++..++..++.+.|++.|++..+...
T Consensus 4 eisv~P~g~~~~s~s~yVa~~i~~l~~sGl~y~~~pm 40 (97)
T TIGR00106 4 EVSIIPIGTVGASVSSYVAAAIEVLKESGLKYELHPM 40 (97)
T ss_pred EEEEeecCCCCCcHHHHHHHHHHHHHHcCCCeEecCC
Confidence 67889997 4567888999999999999999887644
No 146
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=38.05 E-value=1.1e+02 Score=31.49 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=41.8
Q ss_pred CCceEEEEecCCC----------CChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEE
Q psy17941 559 APLKASILPLSSN----------PEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFG 616 (679)
Q Consensus 559 aP~~V~Vi~l~~~----------~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~ 616 (679)
.|-+|+++|-..+ .........+...|+++||+|.+..... ..|+..|.+.|++++
T Consensus 83 kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd--~~qi~~A~~~GAd~V 148 (234)
T cd00003 83 KPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEVGADRV 148 (234)
T ss_pred CCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEE
Confidence 5789999996432 1124566778899999999998764322 568999999999976
No 147
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=37.33 E-value=25 Score=37.44 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=23.3
Q ss_pred ceeeeccceeE-Eeeeecccc-------------eeEe----------ccceeeccccHHHH
Q psy17941 494 KEFVLTKDMIS-IKKSTKTFH-------------VEEI----------IPSVIEPSFGIGRI 531 (679)
Q Consensus 494 ~~f~i~~~~v~-~~~y~~~~~-------------~~~~----------~P~vi~~s~GIeRl 531 (679)
..+.+++.+++ .+||+..++ |++| .|+| |+|++++||
T Consensus 251 ~~i~~D~~~~r~~~YYtG~vFe~~~~~~~~~ia~GGRYD~L~~~fg~~~~Av-Gfai~ld~L 311 (311)
T PF13393_consen 251 IKIIFDLSLVRGLDYYTGIVFEVYAPGRGSPIAGGGRYDNLLEQFGKPIPAV-GFAIGLDRL 311 (311)
T ss_dssp TTEEEETT-GTSSTTEESEEEEEEETTSSSESEEEEEETTHHHHTTSS-EEE-EEEEEHHHH
T ss_pred ceEEEChhhccchhhcCCEEEEEEEcCCCceEecccChhHHHHHhCCCCceE-EEEEEeccC
Confidence 34555555665 566766554 6777 5666 789999886
No 148
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=36.86 E-value=1.8e+02 Score=36.40 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=28.1
Q ss_pred CCCCeeeecccccccCCCCCCCCc--ccccceeEeeEEEEeCCCcc
Q psy17941 263 GRLPFAAAQIGNAFRNEISPRSGL--IRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 263 ~~LP~~~~qig~~FR~E~~pr~Gl--~R~REF~q~e~~~F~~~~~~ 306 (679)
+.-|.+.+++.+|.|.- -+|-|- -|+-.++|.- ....|...
T Consensus 48 ~~~~~~~ayv~p~~rp~-d~ryg~npnrl~~~~q~q--vi~kp~p~ 90 (1000)
T PRK14908 48 GPEPWRVAYVEPSRRPD-DGRYGQNPNRLQTYTQFQ--VILKPVPG 90 (1000)
T ss_pred CCCCCcccccCCCCCCC-CCCcCCCchhhhhheeeE--EEECCCCc
Confidence 55699999999999875 566554 3666666644 35566654
No 149
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=34.23 E-value=1.1e+02 Score=31.62 Aligned_cols=56 Identities=13% Similarity=0.111 Sum_probs=36.9
Q ss_pred CCceEEEEecCCC----------CChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEE
Q psy17941 559 APLKASILPLSSN----------PEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFG 616 (679)
Q Consensus 559 aP~~V~Vi~l~~~----------~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~ 616 (679)
.|-+|+++|-... .........+.+.|+++||+|.+.... --.|++.|.+.|++++
T Consensus 84 kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP--~~~qi~~A~~~Gad~V 149 (239)
T PF03740_consen 84 KPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDP--DPEQIEAAKELGADRV 149 (239)
T ss_dssp --SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEE
T ss_pred CcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCC--CHHHHHHHHHcCCCEE
Confidence 4789999995421 123567788899999999999876422 2578999999999976
No 150
>KOG0556|consensus
Probab=29.83 E-value=53 Score=36.47 Aligned_cols=30 Identities=13% Similarity=0.301 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 102 ALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 102 ~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
++..-|..++|+.. ...||.||.||-|...
T Consensus 229 riq~gvc~~FRe~L-~~kgF~EIhTpKli~a 258 (533)
T KOG0556|consen 229 RIQAGVCFAFREYL-RSKGFVEIHTPKLIGA 258 (533)
T ss_pred ehHHHHHHHHHHHH-HhcCcceecccccccc
Confidence 46667788888877 7889999999988654
No 151
>PLN02221 asparaginyl-tRNA synthetase
Probab=29.06 E-value=38 Score=39.60 Aligned_cols=42 Identities=43% Similarity=0.605 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q psy17941 8 AELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKK 49 (679)
Q Consensus 8 ~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~ 49 (679)
..+++.|+.+++-++.+.+||+++++++++.+++..|+.-..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (572)
T PLN02221 235 ADVEAARLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKE 276 (572)
T ss_pred hhhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhhhhhhh
Confidence 457899999999999999999999999999998888875433
No 152
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=28.56 E-value=1.2e+02 Score=36.63 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=33.7
Q ss_pred CCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccC
Q psy17941 234 PSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRN 278 (679)
Q Consensus 234 ~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~ 278 (679)
|.+...++|||-...|+..+..+++. .+..|++++++|.+|-.
T Consensus 440 PiS~e~s~lR~SLlpgLL~~~~~N~~--r~~~~~rlFEiG~Vf~~ 482 (704)
T CHL00192 440 PLIKDYSTLRSSLLPGLIEAVQENLK--QGNSTLEGFEIGHVFNL 482 (704)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHh--cCCCCEeEEEeeeeEcC
Confidence 45667789999999998888776643 34479999999999943
No 153
>PF09524 Phg_2220_C: Conserved phage C-terminus (Phg_2220_C); InterPro: IPR011741 This entry is represented by the C-terminal domain of Bacteriophage r1t, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=27.96 E-value=29 Score=29.28 Aligned_cols=18 Identities=50% Similarity=0.831 Sum_probs=14.6
Q ss_pred ccccCccchhhHHHHHHHhh
Q psy17941 239 KGYLRPETAQGIFVNFKRLL 258 (679)
Q Consensus 239 ~~yLRPE~aqgi~~~f~~~l 258 (679)
.-||||||--| .+|..+|
T Consensus 55 ~~YLRP~TLF~--~kFe~YL 72 (74)
T PF09524_consen 55 EKYLRPETLFG--SKFESYL 72 (74)
T ss_pred HHhcCchhhhH--HhHHHHc
Confidence 45999999988 8887665
No 154
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.95 E-value=2.4e+02 Score=27.19 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=37.9
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q psy17941 7 EAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKV 50 (679)
Q Consensus 7 ~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~ 50 (679)
..++..++.+++..-+.|..|+.+..+.++|+.++..|+.....
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999888999999999988876663
No 155
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=26.94 E-value=1.9e+02 Score=30.00 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=41.4
Q ss_pred CCceEEEEecCCC----------CChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEE
Q psy17941 559 APLKASILPLSSN----------PEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFG 616 (679)
Q Consensus 559 aP~~V~Vi~l~~~----------~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~ 616 (679)
.|-+|+++|-..+ .........+...|+++||+|.+... . -..|+..|.+.|++++
T Consensus 86 kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid-P-~~~qi~~A~~~GAd~V 151 (239)
T PRK05265 86 KPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID-P-DPEQIEAAAEVGADRI 151 (239)
T ss_pred CCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHHhCcCEE
Confidence 5789999996432 11245667788999999999987642 2 2468999999999976
No 156
>PF14282 FlxA: FlxA-like protein
Probab=26.46 E-value=2.8e+02 Score=24.95 Aligned_cols=50 Identities=10% Similarity=0.242 Sum_probs=37.7
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcC-CChHHHHHHHHHHHHHHHHhhHH
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEG-APELDVKKAVAELKLRKKVLDER 54 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~-~~~~~i~~~v~~l~~~~~~le~~ 54 (679)
.....++.|+.++..+-+.+..|..++ .+.+.-...+..|..+|..|+.+
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQ 66 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQ 66 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999843 36666666666666666666665
No 157
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=25.94 E-value=1.5e+02 Score=29.26 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=18.2
Q ss_pred EEecCCCCChHHHHHHHHHHHHHCCCeEEEe
Q psy17941 565 ILPLSSNPEFQPFIKMLSSELSQNGISFKVD 595 (679)
Q Consensus 565 Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D 595 (679)
++|.+. ++..+.......+|+.+|+.+.+-
T Consensus 39 Lv~wd~-~~~tpe~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 39 LVPWDN-PDATPELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred eecccC-CCCCHHHHHHHHHHHhcCCEEEEE
Confidence 344433 335566677777777777777653
No 158
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=25.76 E-value=1.7e+02 Score=34.91 Aligned_cols=38 Identities=18% Similarity=0.002 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcC
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASG 139 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SG 139 (679)
..-.+...+.+|+.+ ...||+||.|-.|++.+.....+
T Consensus 350 ~~~~~~~~r~vr~~l-~~~G~~Evitysl~s~e~~~~~~ 387 (650)
T COG0072 350 LTPLQKFRRKVRRAL-VGLGFQEVITYSLTSPEEAKLFG 387 (650)
T ss_pred CChHHHHHHHHHHHH-HhCCcceEeeeccCCHHHHHHhc
Confidence 345666777788888 78899999999999998887643
No 159
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=24.23 E-value=60 Score=35.10 Aligned_cols=31 Identities=42% Similarity=0.445 Sum_probs=23.2
Q ss_pred eeecccccccCCCCCCCCcccccceeEeeEEEE
Q psy17941 268 AAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 300 (679)
Q Consensus 268 ~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F 300 (679)
++||||+|||+|-+ .+-.-.-||+|.|+|.-
T Consensus 95 ~vf~i~~~FR~E~~--~~~rHl~EFtmLE~e~a 125 (335)
T PF00152_consen 95 RVFEIGPCFRNEES--RTRRHLPEFTMLEWEMA 125 (335)
T ss_dssp EEEEEEEEE-BSSS--CBTTBSSEEEEEEEEEE
T ss_pred hhhheecceeccCc--ccccchhhhhhhhhccc
Confidence 69999999999943 22224569999999984
No 160
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=23.58 E-value=1.1e+02 Score=29.87 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=26.2
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCC
Q psy17941 563 ASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDS 597 (679)
Q Consensus 563 V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~ 597 (679)
+.|+..+.+..-.+.|..|+..|++.|+.|++-+.
T Consensus 3 ~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl 37 (175)
T COG4635 3 TLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDL 37 (175)
T ss_pred eEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeeh
Confidence 45555554445678899999999999999987543
No 161
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=23.22 E-value=4.7e+02 Score=22.25 Aligned_cols=49 Identities=10% Similarity=0.180 Sum_probs=35.1
Q ss_pred HHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHH
Q psy17941 6 VEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDER 54 (679)
Q Consensus 6 ~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~ 54 (679)
+.+.+.++..++.++...|..++.+-.+.+++..++..+...+..++.+
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~ 57 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTK 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777778777677777877777777777666654
No 162
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=23.04 E-value=2.5e+02 Score=26.78 Aligned_cols=51 Identities=22% Similarity=0.235 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHCCCeEEEeCC---CCCHHHHHHHHHHhCCCEEEEEeCCCC
Q psy17941 574 FQPFIKMLSSELSQNGISFKVDDS---GGSIGKRYARTDEIAIPFGITIDFDTL 624 (679)
Q Consensus 574 ~~~~a~~l~~~Lr~~Gi~v~~D~~---~~slgkq~k~Ad~~Gip~~IiVG~~El 624 (679)
....+..|.+.|++.|+.|.+.-. ..++..+.+.|+..++-+.|-|=-+..
T Consensus 26 ~l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~ 79 (175)
T PF01520_consen 26 NLDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNAS 79 (175)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-S
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCc
Confidence 457888999999999999888633 348999999999999999998876543
No 163
>PLN02591 tryptophan synthase
Probab=22.79 E-value=8.6e+02 Score=25.36 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=49.4
Q ss_pred ccccHHHHHHHHHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHH
Q psy17941 524 PSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGK 603 (679)
Q Consensus 524 ~s~GIeRll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgk 603 (679)
..+|++|++..+.+.+.+ =.|+|= --.+.+..+.+.+++.|+....-....+-..
T Consensus 91 ~~~G~~~F~~~~~~aGv~---------------------GviipD----LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ 145 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVH---------------------GLVVPD----LPLEETEALRAEAAKNGIELVLLTTPTTPTE 145 (250)
T ss_pred HHhHHHHHHHHHHHcCCC---------------------EEEeCC----CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHH
Confidence 368999999887775432 223331 1125667888899999998887665555566
Q ss_pred HHHHHHHhCCCEEEEEeCC
Q psy17941 604 RYARTDEIAIPFGITIDFD 622 (679)
Q Consensus 604 q~k~Ad~~Gip~~IiVG~~ 622 (679)
|++...+..--|+=.|+-.
T Consensus 146 ri~~ia~~~~gFIY~Vs~~ 164 (250)
T PLN02591 146 RMKAIAEASEGFVYLVSST 164 (250)
T ss_pred HHHHHHHhCCCcEEEeeCC
Confidence 7777666666777666643
No 164
>KOG1885|consensus
Probab=22.34 E-value=13 Score=41.74 Aligned_cols=27 Identities=41% Similarity=0.534 Sum_probs=19.6
Q ss_pred eeecccccccCC-CCCCCCcccccceeEeeEE
Q psy17941 268 AAAQIGNAFRNE-ISPRSGLIRVREFTMAEIE 298 (679)
Q Consensus 268 ~~~qig~~FR~E-~~pr~Gl~R~REF~q~e~~ 298 (679)
++|+||+.|||| |..+ ---|||-+|+|
T Consensus 295 rVYEIGr~FRNEGIDlT----HNPEFTTcEfY 322 (560)
T KOG1885|consen 295 RVYEIGRQFRNEGIDLT----HNPEFTTCEFY 322 (560)
T ss_pred HHHHHHHHhhhcCcccc----cCCCcchHHHH
Confidence 589999999999 2222 34678877764
No 165
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.03 E-value=7.1e+02 Score=25.94 Aligned_cols=72 Identities=10% Similarity=-0.042 Sum_probs=43.9
Q ss_pred ccccHHHHHHHHHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHH
Q psy17941 524 PSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGK 603 (679)
Q Consensus 524 ~s~GIeRll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgk 603 (679)
..||++|++..+.+.+. +-.++|-- -.+...++.+.+++.|+...+-....+.-.
T Consensus 100 ~~~G~e~f~~~~~~aGv---------------------dgviipDl----p~ee~~~~~~~~~~~gl~~i~lv~P~T~~e 154 (256)
T TIGR00262 100 FRKGVEEFYAKCKEVGV---------------------DGVLVADL----PLEESGDLVEAAKKHGVKPIFLVAPNADDE 154 (256)
T ss_pred hhhhHHHHHHHHHHcCC---------------------CEEEECCC----ChHHHHHHHHHHHHCCCcEEEEECCCCCHH
Confidence 37999999988776542 33344421 224567888999999998664444444344
Q ss_pred HHHHHHHhCCCEEEEEe
Q psy17941 604 RYARTDEIAIPFGITID 620 (679)
Q Consensus 604 q~k~Ad~~Gip~~IiVG 620 (679)
+++......-.|+.+++
T Consensus 155 ri~~i~~~~~gfiy~vs 171 (256)
T TIGR00262 155 RLKQIAEKSQGFVYLVS 171 (256)
T ss_pred HHHHHHHhCCCCEEEEE
Confidence 55444443334666665
No 166
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=20.59 E-value=3.1e+02 Score=24.81 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=41.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCC--CCHHHHHHHHHHhCCCEEEEEeCCCCCCCC
Q psy17941 561 LKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSG--GSIGKRYARTDEIAIPFGITIDFDTLKEPH 628 (679)
Q Consensus 561 ~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~--~slgkq~k~Ad~~Gip~~IiVG~~El~~~g 628 (679)
++|+|.-...+......+..|...|...|+.+..|+.. ......+..+-..---+++++.++-+ .+.
T Consensus 2 ~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~-~S~ 70 (140)
T smart00255 2 YDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYA-ESE 70 (140)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECcccc-cCh
Confidence 57777665422234567888889999899999888532 22222555554444456677777666 443
No 167
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=20.51 E-value=2e+02 Score=35.20 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=28.5
Q ss_pred cccccCccchhhHHHHHHHhhhhccCCCCeeeeccccccc
Q psy17941 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFR 277 (679)
Q Consensus 238 ~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR 277 (679)
..++|||-...|+..+...++. .+.-|++++++|.+|.
T Consensus 544 e~s~lR~SLlpgLL~~~~~N~~--~~~~~~~lFEiG~V~~ 581 (798)
T TIGR00472 544 ERSVLRTSLLPSLLEVLAYNQN--RKNKDVKIFEIGKVFA 581 (798)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh--CCCCCEeEEeeecccC
Confidence 3458888888888877665542 2356899999999994
No 168
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=20.22 E-value=1.8e+02 Score=35.52 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=29.2
Q ss_pred cccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccC
Q psy17941 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRN 278 (679)
Q Consensus 238 ~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~ 278 (679)
...+|||-...|+..+..+++. .+..|++++++|.+|..
T Consensus 538 e~~~lR~SLlp~LL~~~~~N~~--~~~~~i~lFEiG~Vf~~ 576 (791)
T PRK00629 538 ELSVMRTSLLPGLLEAVAYNLN--RGNKDVALFEIGRVFLP 576 (791)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh--CCCCCEeEEeeeeeeCC
Confidence 3458888888888877666543 34568999999999954
Done!