Query psy17941
Match_columns 679
No_of_seqs 386 out of 2026
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 18:15:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zt5_A Glycyl-tRNA synthetase; 100.0 2E-130 7E-135 1135.7 36.5 676 1-678 1-678 (693)
2 1ati_A Glycyl-tRNA synthetase; 100.0 6.8E-85 2.3E-89 734.5 29.0 465 67-657 5-504 (505)
3 3ikl_A DNA polymerase subunit 100.0 7.6E-74 2.6E-78 628.7 25.1 368 64-658 63-449 (459)
4 1g5h_A Mitochondrial DNA polym 100.0 3.9E-72 1.3E-76 622.0 21.1 409 66-668 23-449 (454)
5 2j3l_A Prolyl-tRNA synthetase; 100.0 6E-56 2.1E-60 508.3 23.0 473 70-660 22-568 (572)
6 3uh0_A Threonyl-tRNA synthetas 100.0 2.1E-54 7.3E-59 481.2 21.9 395 68-658 35-458 (460)
7 1evl_A Threonyl-tRNA synthetas 100.0 6.9E-53 2.3E-57 463.1 31.4 389 70-659 3-394 (401)
8 1nyr_A Threonyl-tRNA synthetas 100.0 1.2E-53 4.2E-58 494.9 24.4 393 70-659 243-642 (645)
9 1qf6_A THRRS, threonyl-tRNA sy 100.0 1.1E-52 3.7E-57 485.4 31.9 387 71-659 245-635 (642)
10 2i4l_A Proline-tRNA ligase; al 100.0 8.9E-53 3E-57 469.4 26.6 400 69-652 41-457 (458)
11 1hc7_A Prolyl-tRNA synthetase; 100.0 1E-51 3.4E-56 461.9 29.1 362 68-657 16-386 (477)
12 1nj1_A PROR, proline-tRNA synt 100.0 1E-51 3.6E-56 464.3 28.0 366 68-657 42-413 (501)
13 4hvc_A Bifunctional glutamate/ 100.0 1.9E-51 6.4E-56 461.1 25.5 363 70-657 35-413 (519)
14 3ial_A Prolyl-tRNA synthetase; 100.0 3.8E-51 1.3E-55 457.6 21.8 355 69-648 27-398 (518)
15 1nj8_A Proline-tRNA synthetase 100.0 2E-49 6.8E-54 441.8 28.9 366 68-657 9-380 (459)
16 3a32_A Probable threonyl-tRNA 100.0 3E-49 1E-53 442.4 16.0 387 90-671 38-465 (471)
17 1qe0_A Histidyl-tRNA synthetas 100.0 6.1E-46 2.1E-50 409.9 19.1 392 89-653 4-419 (420)
18 4g85_A Histidine-tRNA ligase, 100.0 4.2E-45 1.4E-49 413.6 24.8 455 6-657 11-514 (517)
19 4e51_A Histidine--tRNA ligase; 100.0 1.3E-44 4.3E-49 404.1 24.8 376 89-656 34-458 (467)
20 1htt_A Histidyl-tRNA synthetas 100.0 1.2E-43 4E-48 392.1 26.1 383 89-656 6-422 (423)
21 1h4v_B Histidyl-tRNA synthetas 100.0 1.3E-42 4.3E-47 383.6 33.0 384 89-656 5-420 (421)
22 3lss_A Seryl-tRNA synthetase; 100.0 8.9E-43 3E-47 384.8 23.6 286 5-419 48-404 (484)
23 4g84_A Histidine--tRNA ligase, 100.0 4E-42 1.4E-46 384.0 23.9 408 73-658 6-462 (464)
24 1wu7_A Histidyl-tRNA synthetas 100.0 7.5E-42 2.6E-46 379.0 24.1 384 89-657 8-426 (434)
25 2dq0_A Seryl-tRNA synthetase; 100.0 6.4E-42 2.2E-46 379.0 22.7 281 5-417 42-383 (455)
26 3qne_A Seryl-tRNA synthetase, 100.0 1.2E-42 4E-47 383.5 16.2 286 5-419 44-381 (485)
27 3vbb_A Seryl-tRNA synthetase, 100.0 3.5E-42 1.2E-46 382.2 19.1 295 5-419 45-406 (522)
28 2dq3_A Seryl-tRNA synthetase; 100.0 4.5E-42 1.5E-46 378.0 17.1 280 5-416 41-361 (425)
29 1ses_A Seryl-tRNA synthetase; 100.0 5.3E-42 1.8E-46 376.8 15.2 278 5-417 39-358 (421)
30 1wle_A Seryl-tRNA synthetase; 100.0 1.7E-40 5.7E-45 369.9 24.7 286 5-418 81-415 (501)
31 3net_A Histidyl-tRNA synthetas 100.0 5.6E-41 1.9E-45 374.8 19.4 411 72-656 2-464 (465)
32 3lc0_A Histidyl-tRNA synthetas 100.0 2.2E-39 7.5E-44 360.3 22.9 382 90-648 32-446 (456)
33 3err_A Fusion protein of micro 100.0 7.3E-37 2.5E-41 343.8 20.6 253 34-419 175-469 (536)
34 2cja_A Seryl-tRNA synthetase; 100.0 7.8E-37 2.7E-41 341.5 5.6 250 59-416 195-464 (522)
35 3od1_A ATP phosphoribosyltrans 100.0 2.1E-28 7.2E-33 267.8 17.9 349 90-624 13-394 (400)
36 3mf2_A BLL0957 protein; aminoa 99.9 2.9E-26 9.8E-31 241.4 11.7 217 89-418 52-284 (346)
37 1z7m_A ATP phosphoribosyltrans 99.9 5.5E-26 1.9E-30 244.1 13.7 128 89-305 24-153 (344)
38 3rac_A Histidine-tRNA ligase; 99.9 5E-23 1.7E-27 223.3 13.3 127 90-305 26-159 (373)
39 1usy_A ATP phosphoribosyltrans 99.6 2.9E-16 9.9E-21 163.5 6.9 97 106-306 5-104 (275)
40 1v95_A Nuclear receptor coacti 99.5 2.8E-14 9.4E-19 130.6 9.7 96 559-657 7-106 (130)
41 3dsq_A Pyrrolysyl-tRNA synthet 99.3 5.7E-12 1.9E-16 131.8 14.2 114 103-305 72-185 (288)
42 1nnh_A Asparaginyl-tRNA synthe 99.0 4.3E-09 1.5E-13 110.3 16.1 39 98-137 12-51 (294)
43 3qtc_A Pyrrolysyl-tRNA synthet 98.9 8.1E-09 2.8E-13 108.0 13.4 112 104-304 79-190 (290)
44 1eov_A ASPRS, aspartyl-tRNA sy 98.4 6.5E-07 2.2E-11 99.9 9.0 34 99-133 176-209 (487)
45 1n9w_A Aspartyl-tRNA synthetas 98.2 2.5E-06 8.6E-11 93.5 8.4 34 266-302 190-224 (422)
46 1x54_A Asparaginyl-tRNA synthe 98.2 5E-06 1.7E-10 91.5 10.5 35 266-303 200-235 (434)
47 1wyd_A Hypothetical aspartyl-t 98.2 6.7E-06 2.3E-10 90.3 11.2 35 266-303 199-234 (429)
48 3a74_A Lysyl-tRNA synthetase; 98.0 2.9E-05 9.8E-10 86.7 11.7 35 266-303 242-276 (493)
49 1e1o_A Lysyl-tRNA synthetase, 97.8 7E-05 2.4E-09 83.7 11.7 34 267-303 252-285 (504)
50 3a5y_A GENX, putative lysyl-tR 97.7 4.4E-05 1.5E-09 81.5 7.4 33 100-133 35-67 (345)
51 2xgt_A Asparaginyl-tRNA synthe 97.4 0.00017 5.7E-09 79.4 7.2 34 99-133 130-163 (435)
52 1c0a_A Aspartyl tRNA synthetas 97.4 0.0003 1E-08 80.2 9.1 32 100-132 137-168 (585)
53 1l0w_A Aspartyl-tRNA synthetas 97.4 0.00031 1.1E-08 79.8 9.3 32 100-132 143-174 (580)
54 4ah6_A Aspartate--tRNA ligase, 97.3 0.00051 1.7E-08 78.2 9.5 32 100-132 147-179 (617)
55 3l4g_A Phenylalanyl-tRNA synth 97.2 0.0029 9.9E-08 70.4 13.9 60 238-301 320-379 (508)
56 3bju_A Lysyl-tRNA synthetase; 97.2 0.00053 1.8E-08 77.0 7.6 31 101-132 176-206 (521)
57 3nem_A Aspartyl-tRNA synthetas 97.1 0.00045 1.5E-08 75.9 6.5 33 100-133 136-168 (438)
58 4ex5_A Lysine--tRNA ligase; st 97.0 0.00088 3E-08 75.1 8.0 31 101-132 204-234 (529)
59 1b7y_A Phers, protein (phenyla 96.8 0.0077 2.6E-07 64.2 12.5 56 238-302 171-226 (350)
60 3i7f_A Aspartyl-tRNA synthetas 96.8 0.0024 8.3E-08 71.7 8.4 33 100-133 243-275 (548)
61 3m4p_A Ehasnrs, asparaginyl-tR 96.6 0.0021 7.1E-08 71.0 6.4 33 100-133 155-187 (456)
62 2du3_A O-phosphoseryl-tRNA syn 96.6 0.0035 1.2E-07 70.1 8.0 60 239-303 180-240 (534)
63 1fyj_A Multifunctional aminoac 96.6 0.0061 2.1E-07 47.5 7.0 45 11-55 3-47 (57)
64 2djv_A Methionyl-tRNA syntheta 96.5 0.0069 2.3E-07 50.5 7.5 53 3-55 8-60 (79)
65 1d2d_A TRNA synthetase, tRNA l 96.3 0.0039 1.3E-07 49.0 4.4 42 13-54 2-43 (59)
66 3pco_A Phenylalanyl-tRNA synth 95.8 0.034 1.2E-06 58.6 10.2 53 239-301 163-215 (327)
67 2odr_B Phosphoseryl-tRNA synth 95.5 0.054 1.8E-06 61.2 11.1 60 239-302 199-258 (648)
68 2odr_A Phosphoseryl-tRNA synth 95.5 0.056 1.9E-06 61.2 11.1 60 239-302 199-258 (665)
69 2odr_D Phosphoseryl-tRNA synth 95.3 0.077 2.6E-06 60.2 11.2 60 239-302 199-258 (685)
70 2rhq_A Phenylalanyl-tRNA synth 95.0 0.076 2.6E-06 55.1 9.6 57 239-302 109-165 (294)
71 2odr_C Phosphoseryl-tRNA synth 94.9 0.078 2.7E-06 60.3 10.1 60 239-302 199-258 (701)
72 2du7_A O-phosphoseryl-tRNA syn 94.5 0.1 3.5E-06 58.4 9.4 61 238-302 191-251 (549)
73 3l4g_B Phenylalanyl-tRNA synth 90.1 1.5 5.2E-05 49.8 11.9 60 237-302 445-504 (589)
74 3ica_A Phenylalanyl-tRNA synth 87.0 1.2 4E-05 43.8 7.2 64 236-302 55-122 (213)
75 3ig2_A Phenylalanyl-tRNA synth 85.8 1.3 4.6E-05 43.4 6.9 63 237-301 56-121 (213)
76 1x59_A Histidyl-tRNA synthetas 83.7 3 0.0001 33.8 6.9 45 7-51 8-52 (73)
77 2rhq_B Phenylalanyl-tRNA synth 79.6 7.3 0.00025 45.8 11.0 59 238-302 545-603 (795)
78 1b7y_B Phers, protein (phenyla 77.8 8 0.00027 45.3 10.5 53 238-303 540-593 (785)
79 1r6t_A Tryptophanyl-tRNA synth 68.7 7.8 0.00027 42.7 7.1 47 8-54 7-53 (477)
80 3cmq_A Phenylalanyl-tRNA synth 43.2 73 0.0025 34.3 9.2 50 240-300 114-163 (415)
81 1m5w_A Pyridoxal phosphate bio 33.7 76 0.0026 31.5 6.7 56 559-616 87-152 (243)
82 1yqh_A DUF77, IG hypothetical 33.5 1.5E+02 0.0052 25.6 8.0 57 561-617 10-77 (109)
83 3gk0_A PNP synthase, pyridoxin 27.2 98 0.0034 31.3 6.3 56 559-616 115-180 (278)
84 3pco_B Phenylalanyl-tRNA synth 26.2 90 0.0031 36.5 6.8 61 236-301 538-598 (795)
85 2ibo_A Hypothetical protein SP 25.8 79 0.0027 27.2 4.7 38 561-598 5-42 (104)
86 1vk8_A Hypothetical protein TM 23.6 93 0.0032 26.9 4.7 37 561-597 18-54 (106)
87 1jwq_A N-acetylmuramoyl-L-alan 21.6 1.8E+02 0.006 27.2 6.8 49 574-622 30-82 (179)
88 2epi_A UPF0045 protein MJ1052; 21.6 1E+02 0.0035 26.2 4.6 37 561-597 9-45 (100)
89 3a5y_A GENX, putative lysyl-tR 21.5 55 0.0019 34.3 3.5 32 268-302 111-142 (345)
90 1lxj_A YBL001C, hypothetical 1 21.2 2.5E+02 0.0087 23.9 7.1 58 561-618 8-77 (104)
No 1
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=2e-130 Score=1135.65 Aligned_cols=676 Identities=60% Similarity=1.021 Sum_probs=508.4
Q ss_pred CCChhHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhcCCCCCCCChHHHHHHHHHhccc
Q psy17941 1 MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKMEDLLKRRFFY 80 (679)
Q Consensus 1 ~~~~~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~l~~r~~f~ 80 (679)
|++..+...++++++.+.+|++.||+||++++++.+|+++|++|+++++.++..+..+.+.+.+++++++++||+|+||+
T Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~vr~lk~~~a~~~~i~~av~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~r~gf~ 80 (693)
T 2zt5_A 1 MDGAGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFY 80 (693)
T ss_dssp ---------------------------------------------------------------CCCHHHHHHHHHHTTSE
T ss_pred CCchhHHHHHHHHHHHHHHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHhCCCc
Confidence 66778889999999999999999999999999999999999999999999887655555667789999999999999999
Q ss_pred cchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccch
Q psy17941 81 DQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRL 160 (679)
Q Consensus 81 ~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~ 160 (679)
+|+++||||++|+|||+|.|+++++||+++||++|+.+.||+||+||+|+|.+||++||||++|+|+|+++.+++++||+
T Consensus 81 ~~~~eiy~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~m~~~~~~~e~yr~ 160 (693)
T 2zt5_A 81 DQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRA 160 (693)
T ss_dssp EETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEEEBSSSCCEEEH
T ss_pred ccchhhcCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCcccccccceeeccCCceeec
Confidence 99999999999999999999999999999999999447799999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCccc
Q psy17941 161 DHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKG 240 (679)
Q Consensus 161 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~ 240 (679)
|||++++++++|+|++++++...+++.+++.+++||+||+.+++.+++|+||.|||+||+|++|||||+|+|||+|++.+
T Consensus 161 D~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~ 240 (693)
T 2zt5_A 161 DHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPG 240 (693)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEE
T ss_pred cHhHHHHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcce
Confidence 99999999999999888999899999999999999999988888888999999999999999999999999999999999
Q ss_pred ccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHH
Q psy17941 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMM 320 (679)
Q Consensus 241 yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~ 320 (679)
|||||||||+|+||+|++.+|+++|||++||||++||||+|||+||+|+|||+|+|+|+||+|++..|++|+.|.|+|+
T Consensus 241 ~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~- 319 (693)
T 2zt5_A 241 YLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHL- 319 (693)
T ss_dssp EECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEE-
T ss_pred eeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHH-
Confidence 9999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccC
Q psy17941 321 VLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY 400 (679)
Q Consensus 321 ~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~ 400 (679)
++|.+++|+||..++.+++.+|++.+++.+++++||++.+..|+..+|+++..++|++|+.++|+||+.+|||+|+++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~ 399 (693)
T 2zt5_A 320 YLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSY 399 (693)
T ss_dssp EEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETT
T ss_pred hhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhcCHhHHHHHHHh
Q psy17941 401 GWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEES 480 (679)
Q Consensus 401 g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~~~~~~~~~~ 480 (679)
||.||++|++|++|||+.|...++.+|.+...+++|..++.+.+.++.+..|++|.+++|.|.|+|+..+++++..+...
T Consensus 400 g~~e~~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~ 479 (693)
T 2zt5_A 400 GWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479 (693)
T ss_dssp EEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC------------------------------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHHHHHHHhcccHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777777899999999999999999888889999999
Q ss_pred hhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccHHHHHHHHHHhccccCCCccccccccCCCCCCC
Q psy17941 481 LNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAP 560 (679)
Q Consensus 481 l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIeRll~al~e~~~~~~~~~~~r~~l~~P~~laP 560 (679)
|...|.++++++|..|++..+++.+++|.....|++|+|+|+|+||||||++++|++++++.+..+++|+++.||+++||
T Consensus 480 L~~~g~i~i~vdGt~Fei~~~~~~~~~y~~~~~Ggry~P~Vi~~s~GigRli~aLie~~~~~~~~~~~r~g~~~P~~lAP 559 (693)
T 2zt5_A 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAP 559 (693)
T ss_dssp --------------------------------CCEEECCEEEEEEEEHHHHHHHHHHHHEEECSSTTCCEEECCCTTTSS
T ss_pred HHhcCCEEEEECCEEEEecccccceeeEEeccCCcEecCcceeCeehHHHHHHHHHHHhccccccccccccccCCCCCCC
Confidence 98888888888888899998877777777778899999999999999999999999987775554566777899999999
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCC--CCCCeEEEEECCCC
Q psy17941 561 LKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTL--KEPHSVTLRERDSM 638 (679)
Q Consensus 561 ~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El--~~~g~Vtlr~r~t~ 638 (679)
++|+|+|+++++++.++|.+|++.||++||+|++|+++.++|+||++|+++|+||+||||++|+ + +|+|+||+|+|+
T Consensus 560 ~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~~sigkk~k~Ad~~G~p~~IiIG~~El~~~-~g~Vtvr~r~t~ 638 (693)
T 2zt5_A 560 FKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKT-PHTATLRDRDSM 638 (693)
T ss_dssp CSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHHHHHHHHTTCCEEEEECHHHHTSS-SCEEEEEETTTC
T ss_pred CeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhcc-CCEEEEEECCCC
Confidence 9999999986556889999999999999999999999999999999999999999999999998 6 899999999999
Q ss_pred ceEEEehHHHHHHHHHHHhcccchHHHHccCCCcccccCC
Q psy17941 639 TQVRVKVNEVASVIKDLSLAKITWEDVQSKYPKFEAQEGS 678 (679)
Q Consensus 639 ~q~~v~i~el~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 678 (679)
+|.+|+++++++.|.+++.+..||+++.++||.|++|+++
T Consensus 639 eq~~v~l~el~~~l~~~l~~~~~w~~~~~~~~~~~~~~~~ 678 (693)
T 2zt5_A 639 RQIRAEISELPSIVQDLANGNITWADVEARYPLFEGQETG 678 (693)
T ss_dssp CEEEEETTTHHHHHHHHHTTSSCHHHHHHHSCBCC-----
T ss_pred ceEEEeHHHHHHHHHHHHhCcccHHHHHHhccchhccccc
Confidence 9999999999999999999999999999999999998543
No 2
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=6.8e-85 Score=734.50 Aligned_cols=465 Identities=37% Similarity=0.566 Sum_probs=355.8
Q ss_pred hHHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhh--hhCceEeecCcccchhhhhhcCCcccc
Q psy17941 67 RAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVL--EEQMLEVDCSILTLEPVLKASGHVDRF 144 (679)
Q Consensus 67 ~~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~--~~g~~ev~~P~l~~~~v~~~SGh~~~f 144 (679)
.+++.+||+|+|||+|+++|||+++|+|||+|.|++++++|+++||++| . ++||+||+||+|++.+||++||||++|
T Consensus 5 ~~~~~~l~~r~g~i~~~~ei~~~~~G~~d~~P~G~~l~~~l~~~~r~~~-~~~~~g~~ev~tP~l~~~~l~~~SGh~~~f 83 (505)
T 1ati_A 5 LDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRN-VYERDDMEGLDASVLTHRLVLHYSGHEATF 83 (505)
T ss_dssp HHHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHH-TTSCSSEEEEBCCSEEETTHHHHTSHHHHC
T ss_pred HHHHHHHHHHCCCEEcchhhcCCCCCcceeCccHHHHHHHHHHHHHHHH-HHhhCCcEEEEccccCCHHHHHhcCChhhc
Confidence 6788999999999999999999999999999999999999999999999 6 899999999999999999999999999
Q ss_pred cCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCC--------------
Q psy17941 145 ADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIK-------------- 210 (679)
Q Consensus 145 ~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~-------------- 210 (679)
+|+||++..++++||+|||++++ +..+.. . ...-..+.+||++++.++.|+
T Consensus 84 ~d~m~~~~~~~~~~r~d~l~~~~-~~~~~~----~----------~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~ 148 (505)
T 1ati_A 84 ADPMVDNRITKKRYRLDHLLKEQ-PEEVLK----R----------LYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGV 148 (505)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred Cccceeccccccccchhhhhhhh-hhhhcc----c----------cccccccHHHHHHHHHhhccccccccccccccccc
Confidence 99999999999999999998665 111000 0 000115678999999988888
Q ss_pred -CCCCC--CCCCCchhhhhhhhcccCCCCC--cccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCC
Q psy17941 211 -SPLTK--NDLSEPMEFNLMFATQIGPSGL--IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSG 285 (679)
Q Consensus 211 -~P~~~--~~~~~~~~fnlmf~~~ig~~g~--~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~G 285 (679)
||.|| |+||+|++|||||+|.|||+++ +..|||||||||+|++|++.+..+.++||+++||||+|||||++|+.|
T Consensus 149 ~cp~~~~~~~~~~~~~fnlmf~t~~gpt~ee~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~G 228 (505)
T 1ati_A 149 LDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNF 228 (505)
T ss_dssp ----------CCCCEEEECBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTG
T ss_pred cCCccCccccccccchhhhhhhcccCCccccccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCC
Confidence 99998 7999999999999999999975 689999999999999999988877679999999999999999999999
Q ss_pred cccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHH
Q psy17941 286 LIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMI 365 (679)
Q Consensus 286 l~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~ 365 (679)
|+|+|||+|+|+|+||+|++... +..+++.....++.
T Consensus 229 L~R~REF~q~d~~~f~~~e~~~~-------------------------------------------~~~~~i~~~~~i~~ 265 (505)
T 1ati_A 229 IFRVREFEQMEIEYFVRPGEDEY-------------------------------------------WHRYWVEERLKWWQ 265 (505)
T ss_dssp GGSCSEEEEEEEEEEECGGGHHH-------------------------------------------HHHHHHHHHHHHHH
T ss_pred CCcccceEEeeEEEEECHHHHHH-------------------------------------------HHHHHHHHHHHHHH
Confidence 99999999999999999987631 13446667778889
Q ss_pred HcCCCccchhhhhccCccccccccCccchhhhccCCceeeeeccccchhhHhHHHHHhC-CcccccccCCCCccceeecc
Q psy17941 366 SVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATG-VRLSAEKHLPEPQTREIVEP 444 (679)
Q Consensus 366 ~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~-~~l~~~~~~~~p~~~~~~~~ 444 (679)
.+|+++..++++.+..++++||+.+|||+|+++++||.|++||++|.+|+|+.|....+ ..+.+. .
T Consensus 266 ~LGl~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~~~~e~~g~~~~~d~~L~~~~~~~~~~~~~~~-------------~ 332 (505)
T 1ati_A 266 EMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITAR-------------V 332 (505)
T ss_dssp HTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHCSSTTTTTCCSC-------------C
T ss_pred HcCCCeEEEEECCCChHhhhcccHHHHhHHhhcCCCCccchhhhcccceecchhhccccccceeee-------------e
Confidence 99999888888777777888999999999999999999999999999999987653211 011000 0
Q ss_pred cCcccccCccccchhhHHHHHhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeec
Q psy17941 445 VLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEP 524 (679)
Q Consensus 445 ~~~~~~~G~~~~~~~~~i~d~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~ 524 (679)
..+. ...+.+. |....++++|+|+++|+
T Consensus 333 ~~n~--------------------------------------------~~~~~~~--------y~d~~g~~~y~p~vig~ 360 (505)
T 1ati_A 333 LRNE--------------------------------------------HSTQRLA--------YRDPETGKWFVPYVIEP 360 (505)
T ss_dssp CCCS--------------------------------------------CCCSCCC--------EECSSSCCEECCEEEEE
T ss_pred cccc--------------------------------------------cceeEEE--------EEcCCCCeeecceEEEE
Confidence 0000 0111111 22223456789999999
Q ss_pred cccHHHHHHHHHHhccccCCC--ccccccccCCCCCCCceEEEEecCC-CCChHHHHHHHHHHHHHCC-CeEEEeCCCCC
Q psy17941 525 SFGIGRIMYALFEHNFKMRDG--DEQRTYLALPPLVAPLKASILPLSS-NPEFQPFIKMLSSELSQNG-ISFKVDDSGGS 600 (679)
Q Consensus 525 s~GIeRll~al~e~~~~~~~~--~~~r~~l~~P~~laP~~V~Vi~l~~-~~e~~~~a~~l~~~Lr~~G-i~v~~D~~~~s 600 (679)
|+|++|++++|+++++...+. ++++.++.||+++||++|+|+|+++ ++++.++|.+|++.||++| ++|++|++ .+
T Consensus 361 s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~-~s 439 (505)
T 1ati_A 361 SAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT-GN 439 (505)
T ss_dssp EEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC-SC
T ss_pred eeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC-CC
Confidence 999999999999886532210 1124447899999999999999986 3358899999999999999 99999998 89
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCCCC---------CCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 601 IGKRYARTDEIAIPFGITIDFDTLKE---------PHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 601 lgkq~k~Ad~~Gip~~IiVG~~El~~---------~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
+|+||++|+++|+||+||||++|+ + +|+|+||+|+|++|.+|+++++++.|.+++.
T Consensus 440 ig~k~~~ad~~g~p~~iivG~~el-~~~~~~~~~~~g~V~vr~r~t~~q~~v~~~el~~~l~~~l~ 504 (505)
T 1ati_A 440 IGKAYRRHDEVGTPFAVTVDYDTI-GQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRERLR 504 (505)
T ss_dssp HHHHHHHHHHTTCSEEEEECHHHH-TCCTTSCCTTTTEEEEEETTTCCEEEEEHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCEEEEEChHHh-hhccccccccCCEEEEEECCCCceEEEEHHHHHHHHHHHhc
Confidence 999999999999999999999999 8 9999999999999999999999999987653
No 3
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=7.6e-74 Score=628.69 Aligned_cols=368 Identities=21% Similarity=0.315 Sum_probs=315.0
Q ss_pred CCChHHHHHHHHHhccccchhhhc---CCCCcce-eeCcchHHHHHHHHHHHHHHHhh-hhCceEeecCcccchhhhhhc
Q psy17941 64 SFDRAKMEDLLKRRFFYDQSFSIY---GGISGQY-DFGPMGCALKTNMLSAWRQFFVL-EEQMLEVDCSILTLEPVLKAS 138 (679)
Q Consensus 64 ~~~~~~~~~l~~r~~f~~~~~ei~---~~~~G~~-d~~P~G~~l~~~i~~~~r~~~~~-~~g~~ev~~P~l~~~~v~~~S 138 (679)
..+++.+++||+||+|+.|+++|| |+++|+| +|+|+||.|++||+++||++++. +.++.||+||+ .++|++|
T Consensus 63 ~~~~~~l~~~~~rr~f~~~~~~~~~~~~~~~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~---~~~~~~S 139 (459)
T 3ikl_A 63 GEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH---HKPGPLL 139 (459)
T ss_dssp ---CCSHHHHHHHTTSBCSCTTTTCHHHHHTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS---BCCSCCC
T ss_pred chhHHHHHHHHHhcCcccccchhcccCCCccccccccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc---ccccccC
Confidence 356889999999999999999999 9999999 99999999999999999999966 55689999999 5669999
Q ss_pred CCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCC
Q psy17941 139 GHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDL 218 (679)
Q Consensus 139 Gh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~ 218 (679)
|||++|.
T Consensus 140 GH~d~~~------------------------------------------------------------------------- 146 (459)
T 3ikl_A 140 PGDSAFR------------------------------------------------------------------------- 146 (459)
T ss_dssp SSCSCCT-------------------------------------------------------------------------
T ss_pred cchhhhc-------------------------------------------------------------------------
Confidence 9998875
Q ss_pred CCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCC---CCCCCCcccccceeEe
Q psy17941 219 SEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNE---ISPRSGLIRVREFTMA 295 (679)
Q Consensus 219 ~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E---~~pr~Gl~R~REF~q~ 295 (679)
.|||||||||+|+||++.+.++.++|||+++|||+||||| ++|++||+|+|||+|+
T Consensus 147 ---------------------~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~ 205 (459)
T 3ikl_A 147 ---------------------GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEA 205 (459)
T ss_dssp ---------------------TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEE
T ss_pred ---------------------ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeee
Confidence 1999999999999999999999889999999999999999 5789999999999999
Q ss_pred eEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchh
Q psy17941 296 EIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLR 375 (679)
Q Consensus 296 e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~ 375 (679)
|+++||.|+++. +++.||+..+..|+..+|+++.+++
T Consensus 206 E~~~F~~Pe~~~-------------------------------------------e~~~~~~~~~~~~~~~LGi~~~~~r 242 (459)
T 3ikl_A 206 SLVWFTPPRTSN-------------------------------------------QWLDFWLRHRLQWWRKFAMSPSNFS 242 (459)
T ss_dssp EEEEEECGGGHH-------------------------------------------HHHHHHHHHHHHHHHHHCSSGGGEE
T ss_pred eEEEEeChhHHH-------------------------------------------HHHHHHHHHHHHHHHHhCCChhhEE
Confidence 999999999863 3477899999999999999999999
Q ss_pred hhhccCccccccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccc
Q psy17941 376 FRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEF 455 (679)
Q Consensus 376 ~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~ 455 (679)
++++..++ |.+|||+|+++|+||.|++||++|+||||..|...++.+|..
T Consensus 243 ~~~~~~ee----A~~~~DiE~~~p~G~~E~~g~sn~tDfqL~~~~~~~~~~~~~-------------------------- 292 (459)
T 3ikl_A 243 SSDCQDEE----GRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHG-------------------------- 292 (459)
T ss_dssp EEEECCSS----SSCEEEEEEECSSCEEEEEEEEEEETHHHHHHSCSCSSSSCC--------------------------
T ss_pred EeecCchH----HHhhcCeEEEcCCceEEEeeeeccchhhhhccccccCceeEc--------------------------
Confidence 99986554 778999999999999999999999999999875322222110
Q ss_pred cchhhHHHHHhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccHHHHHHHH
Q psy17941 456 KKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYAL 535 (679)
Q Consensus 456 ~~~~~~i~d~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIeRll~al 535 (679)
.-+.+.|+|.|++.|+|++|+++|+
T Consensus 293 -------------------------------------------------------~dg~~k~~P~vi~~s~Gv~R~~~Ai 317 (459)
T 3ikl_A 293 -------------------------------------------------------RDGRKNVVPCVLSVNGDLDRGMLAY 317 (459)
T ss_dssp -------------------------------------------------------BSSSCBCCCEEEEEEEEHHHHHHHH
T ss_pred -------------------------------------------------------cCCCeeeeeEEEEecccHHHHHHHH
Confidence 0011457899999999999999999
Q ss_pred HHhccccCC------CccccccccCCCCCCCceEEEEecCC--CCChHHHHHHHHHHHHHCCCeEE--EeCC-CCCHHHH
Q psy17941 536 FEHNFKMRD------GDEQRTYLALPPLVAPLKASILPLSS--NPEFQPFIKMLSSELSQNGISFK--VDDS-GGSIGKR 604 (679)
Q Consensus 536 ~e~~~~~~~------~~~~r~~l~~P~~laP~~V~Vi~l~~--~~e~~~~a~~l~~~Lr~~Gi~v~--~D~~-~~slgkq 604 (679)
+++++++.+ .+++|+|+.||+++||+||.|+ ++. ++++.++|.+|++.|+++||+|+ +|++ +.++|+|
T Consensus 318 Le~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Ii-i~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK 396 (459)
T 3ikl_A 318 LYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALD-VGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQL 396 (459)
T ss_dssp HHTTCC-------------CCCCCCCTTTCSCCEEEE-ESSCCSTTHHHHHHHHHHHHHHTSCCEECGGGSSSCCTTHHH
T ss_pred HHHHhhhccccccccccccceEEEeCcccCCceEEEE-eCCCCCHHHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHHHH
Confidence 999998665 4679999999999999999999 543 35789999999999999999999 7887 8999999
Q ss_pred HHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHhc
Q psy17941 605 YARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLA 658 (679)
Q Consensus 605 ~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~ 658 (679)
|++||++|+||+||||++|+ ++|+|+||+|+|++|.+|+++++++.|.+++++
T Consensus 397 ~r~Ad~iGiPy~IiVG~kEl-e~g~VtVR~Rdtgeq~~v~ldeli~~l~~~i~~ 449 (459)
T 3ikl_A 397 YSKYDEMSILFTVLVTETTL-ENGLIHLRSRDTTMKEMMHISKLKDFLIKYISS 449 (459)
T ss_dssp HHHHGGGTCSEEEEECTTST-TSSEEEEEETTTCCCCCEETTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEECchhh-hCCEEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 99999999999999999999 899999999999999999999999999988764
No 4
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=100.00 E-value=3.9e-72 Score=621.95 Aligned_cols=409 Identities=20% Similarity=0.280 Sum_probs=333.6
Q ss_pred ChHHHHHHHHHhccccchhhhc---CCCCcce-eeCcchHHHHHHHHHHHHHHHh-hhhCceEeecCcccchhhhhhcCC
Q psy17941 66 DRAKMEDLLKRRFFYDQSFSIY---GGISGQY-DFGPMGCALKTNMLSAWRQFFV-LEEQMLEVDCSILTLEPVLKASGH 140 (679)
Q Consensus 66 ~~~~~~~l~~r~~f~~~~~ei~---~~~~G~~-d~~P~G~~l~~~i~~~~r~~~~-~~~g~~ev~~P~l~~~~v~~~SGh 140 (679)
..+++.+||+|+||++|+++|| ||++|++ +|+|.|++|++||+++||+.++ .+.|++||+||+|.|..+|++|
T Consensus 23 ~~~~~~~l~krrgf~~~s~eiy~g~~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s-- 100 (454)
T 1g5h_A 23 AREALVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRD-- 100 (454)
T ss_dssp --CHHHHHHHHTTSBCCCGGGGSHHHHHHCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCC--
T ss_pred HHHHHHHHHHHcCCccccchhcccCCCCCcceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhcccc--
Confidence 4678899999999999999999 6789988 9999999999999999999864 4899999999999999999986
Q ss_pred cccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCC
Q psy17941 141 VDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSE 220 (679)
Q Consensus 141 ~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~ 220 (679)
++|.||||||+.++. ...++|+|||.+.+.+.
T Consensus 101 ------------~~g~~~r~d~~~e~~-----------------------~~~g~~~eem~~~~~~~------------- 132 (454)
T 1g5h_A 101 ------------SAFRLVSPESIREIL-----------------------QDREPSKEQLVAFLENL------------- 132 (454)
T ss_dssp ------------CCCEEECHHHHHHHH-----------------------CC---CHHHHHHHHHHH-------------
T ss_pred ------------ccCcccHHHHHHHHh-----------------------hccCCCHHHHHHHHHhh-------------
Confidence 356788999997542 13578889987765331
Q ss_pred chhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeeccccccc---CCCCCCCCcccccceeEeeE
Q psy17941 221 PMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFR---NEISPRSGLIRVREFTMAEI 297 (679)
Q Consensus 221 ~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR---~E~~pr~Gl~R~REF~q~e~ 297 (679)
++ ...|||||||||+|+||++.+.+++++|||++||||+||| ||++|+.||+|+|||+|+|+
T Consensus 133 -------~~--------~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~ 197 (454)
T 1g5h_A 133 -------LK--------TSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASL 197 (454)
T ss_dssp -------HH--------HSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEE
T ss_pred -------cC--------cceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhhe
Confidence 22 2569999999999999999999888899999999999999 69999999999999999999
Q ss_pred EEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhh
Q psy17941 298 EHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFR 377 (679)
Q Consensus 298 ~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r 377 (679)
|+||+|++.. +++.||+.....|+..+|+++.+++++
T Consensus 198 ~~F~~pe~~~-------------------------------------------e~~~~~~~~~~~~~~~lgi~~~~~r~~ 234 (454)
T 1g5h_A 198 VWFTPTRTSS-------------------------------------------QWLDFWLRHRLLWWRKFAMSPSNFSSA 234 (454)
T ss_dssp EEEECHHHHH-------------------------------------------HHHHHHHHHHHHHHHTTCSSGGGEEEE
T ss_pred EEEeCHhhHH-------------------------------------------HHHHHHHHHHHHHHHHcCCCceeEEec
Confidence 9999986542 246778888999999999999888876
Q ss_pred hccCccccccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccc
Q psy17941 378 QHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKK 457 (679)
Q Consensus 378 ~~~~~e~~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~ 457 (679)
.+.. +. +.+++|+|+++|+||.|+.||+++++|+|..|...++
T Consensus 235 ~~~~-~~---a~~~~~ie~~~p~g~~e~~g~~~~td~~l~~~~~~s~--------------------------------- 277 (454)
T 1g5h_A 235 DCQD-EL---GRKGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNV--------------------------------- 277 (454)
T ss_dssp EEEC-TT---SCEEEEEEEEETTEEEEEEEEEEEESHHHHHHSTTCG---------------------------------
T ss_pred CCHH-HH---HhcCCCcEEecCCCceEEEEecCCCHHHHHhccCCce---------------------------------
Confidence 6433 22 5678999999999999999999999999987632111
Q ss_pred hhhHHHHHhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccHHHHHHHHHH
Q psy17941 458 DAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFE 537 (679)
Q Consensus 458 ~~~~i~d~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIeRll~al~e 537 (679)
|++. |.. .++.++|+|+++|+||+|+++++++
T Consensus 278 --------------------------------------~~l~--------y~d--~~~~~~P~vi~~s~Gv~R~i~aile 309 (454)
T 1g5h_A 278 --------------------------------------STIQ--------GRD--GRKNVVPCVLSVSGDVDLGTLAYLY 309 (454)
T ss_dssp --------------------------------------GGSC--------EEE--TTEEECCEEEEEEEEHHHHHHHHHH
T ss_pred --------------------------------------eeEE--------EEC--CCCcEeeEEEeCcccHHHHHHHHHH
Confidence 0000 111 1246789999999999999989999
Q ss_pred hccccC------CCccccccccCCCCCCCceEEEE-ecCCCCChHHHHHHHHHHHHHCCCeEE--EeCC-CCCHHHHHHH
Q psy17941 538 HNFKMR------DGDEQRTYLALPPLVAPLKASIL-PLSSNPEFQPFIKMLSSELSQNGISFK--VDDS-GGSIGKRYAR 607 (679)
Q Consensus 538 ~~~~~~------~~~~~r~~l~~P~~laP~~V~Vi-~l~~~~e~~~~a~~l~~~Lr~~Gi~v~--~D~~-~~slgkq~k~ 607 (679)
+++++. |+|++|+++.||+++||+||+|+ +.+.++++.++|.+|++.||++|++|+ +|++ +.++|+||++
T Consensus 310 ~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi~v~~~~Ddr~~~sigkk~r~ 389 (454)
T 1g5h_A 310 DSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSK 389 (454)
T ss_dssp HHEEC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSCCCSCHHHHHHH
T ss_pred HhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHH
Confidence 888753 55679999999999999999999 654224588999999999999999996 8887 8999999999
Q ss_pred HHHhCCCEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHhcccchHHHHcc
Q psy17941 608 TDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKITWEDVQSK 668 (679)
Q Consensus 608 Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~~~~~~~~~~ 668 (679)
|+++|+||+||||++|+ ++|+|+||+|+|++|.+|+++++++.|.+++.+..+|+.....
T Consensus 390 Ad~~GiP~~IiVG~~El-e~g~VtvR~r~t~eq~~v~l~el~~~l~~~l~~~~~~~~~~~~ 449 (454)
T 1g5h_A 390 YDEMSVLFSVLVTETTL-ENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASASNVAAALDH 449 (454)
T ss_dssp HHHTTCSEEEEECHHHH-HHCEEEEEETTTCCEEEEETTSHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHcCCCEEEEECcchh-hCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhccchhhhhhcc
Confidence 99999999999999999 7999999999999999999999999999999999999865543
No 5
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=6e-56 Score=508.25 Aligned_cols=473 Identities=18% Similarity=0.235 Sum_probs=326.2
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCce
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMV 149 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~ 149 (679)
...+|.+.||+.++ ++|+|||+|.|++++++|+++|++.| .++||+||.||+|++.++|++||||+.|.++||
T Consensus 22 ~h~~l~~~g~~~~~------~~G~~~~lP~g~~~~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~ 94 (572)
T 2j3l_A 22 SHQILLRAGYIRQV------AAGIYSYLPLANRVLEKLKTIMREEF-EKIDAVEMLMPALLPAELWKESGRYETYGPNLY 94 (572)
T ss_dssp HHHHHHHTTSEEEE------ETTEEEECHHHHHHHHHHHHHHHHHH-HTTTCEECBCCSEEETHHHHHHSHHHHSCTTSC
T ss_pred CHHHHHhCCCcccc------CCCeeeeCCHHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHHHhcCCccccchheE
Confidence 45577778888764 59999999999999999999999999 999999999999999999999999999999999
Q ss_pred eeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhh
Q psy17941 150 KDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFA 229 (679)
Q Consensus 150 ~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~ 229 (679)
+....
T Consensus 95 ~~~d~--------------------------------------------------------------------------- 99 (572)
T 2j3l_A 95 RLKDR--------------------------------------------------------------------------- 99 (572)
T ss_dssp EEECT---------------------------------------------------------------------------
T ss_pred EEecC---------------------------------------------------------------------------
Confidence 85332
Q ss_pred cccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhh
Q psy17941 230 TQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHA 309 (679)
Q Consensus 230 ~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~ 309 (679)
+++..+||||+|+++++.|++.+... ++||+++||+|+|||+|.+|+.||+|+|||+|+|+|+||.+.+.+..
T Consensus 100 ------~~~~~~LrP~~~~~~~~~~~~~~~s~-~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~ 172 (572)
T 2j3l_A 100 ------NDRDYILGPTHEETFTELIRDEINSY-KRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQ 172 (572)
T ss_dssp ------TCCEEEECSCCHHHHHHHHHHHCCBG-GGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHH
T ss_pred ------CCCeEEEccccHHHHHHHHHhhccCh-hhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHH
Confidence 12245999999999999999876533 47999999999999999888999999999999999999997776677
Q ss_pred hHHHHHHHHHHHHHHHhh-----------ccCCCCce-EEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhh
Q psy17941 310 KFSDVETTQMMVLYSACN-----------QMDGKPAE-RITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFR 377 (679)
Q Consensus 310 ~~~~v~d~~~~~lf~~~~-----------~~~g~~~~-~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r 377 (679)
.+..+.+++. .+|.++| .+||..|| |+.+++.|++.++.|+.|+ |.++.+.. ..+........-.
T Consensus 173 e~~~~~~~~~-~~~~~lgl~~~~~~~~~g~~g~~~s~E~~~~~~~ge~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 249 (572)
T 2j3l_A 173 SYRDYEKAYS-RIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESD-YAANLEMA-TSLYTPKKSHETQ 249 (572)
T ss_dssp HHHHHHHHHH-HHHHHTTCCEEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSS-CEEETTTC-CCCCCCCCCCCCC
T ss_pred HHHHHHHHHH-HHHHHcCCcEEEEecccccCCCcccEEEEEEcCCCcceEEEeCCCC-cccchhhh-hcccccccccccc
Confidence 7888778887 8998876 67888888 9999999999999999888 33222110 0000000000000
Q ss_pred hccCccccccccCccchhhhccC---------------CceeeeeccccchhhHhHHH--HHhCC-cccccccCCCCccc
Q psy17941 378 QHMGNEMAHYACDCWDAECLTSY---------------GWVECVGCADRSAYDLTQHF--KATGV-RLSAEKHLPEPQTR 439 (679)
Q Consensus 378 ~~~~~e~~~ya~~~~d~e~~~~~---------------g~~e~~~~~~r~~~dl~~~~--~~s~~-~l~~~~~~~~p~~~ 439 (679)
..+ + ....+++.+++....+ ++.+.+.+..|++.+++..+ +..+. ++. ...+.++
T Consensus 250 ~~~--~-~~~~~~~~ti~~l~~~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl~~~l~~~~l~----~a~~~el 322 (572)
T 2j3l_A 250 LDL--E-KIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGADFLD----EATEEDA 322 (572)
T ss_dssp CCC--E-EEECTTCCSHHHHHHHHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHHHHTCSCEE----ECCHHHH
T ss_pred ccc--c-eecCCCCCcHHHHHHHhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHHHHhhCCCccc----cCCHHHH
Confidence 000 0 0111122111111000 00023334455665554332 22222 111 0111111
Q ss_pred eeecccCcccccCc-cccchhhHHHHH-hhhcCHhHHHHHHHhh---hcCCcEEEeec-Cceeeec--------------
Q psy17941 440 EIVEPVLNKGIIGK-EFKKDAKTICDA-LAALDLNSVSAVEESL---NTNGKYELLVD-DKEFVLT-------------- 499 (679)
Q Consensus 440 ~~~~~~~~~~~~G~-~~~~~~~~i~d~-L~~~~~~~~~~~~~~l---~~~g~~~~~~~-g~~f~i~-------------- 499 (679)
+. ..+...+++|| ..+++++.++|. |.+. .+++ +..+.|.++++ |++|...
T Consensus 323 ~~-~~g~~~g~~~p~gl~~~i~~~iD~sl~r~--------~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~ 393 (572)
T 2j3l_A 323 RR-VLGAGFGSIGPVNVSEDVKIYADLAVQDL--------ANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPS 393 (572)
T ss_dssp HH-HHSSCTTSCCSTTCCTTCEEEEETTTTTC--------CSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBC
T ss_pred HH-hhCCCccccCCccCCCCCcEEEehhhhcC--------CceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCcc
Confidence 11 11223445555 122122222222 1000 0000 12233444443 3333311
Q ss_pred ----------------cceeEEeeeeccc-------ceeEeccceeeccccHHHHHHHHHHhccccCCCccccccccCCC
Q psy17941 500 ----------------KDMISIKKSTKTF-------HVEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPP 556 (679)
Q Consensus 500 ----------------~~~v~~~~y~~~~-------~~~~~~P~vi~~s~GIeRll~al~e~~~~~~~~~~~r~~l~~P~ 556 (679)
+.+-..++|++.+ +|....|.|+++++||+|++++|++++.++.+ +.||+
T Consensus 394 ~~~gg~~~~~~~ievg~~f~Lg~~ys~~~~~~~~~~~g~~~~p~~g~~giGveRli~~l~e~~~d~~g-------~~~p~ 466 (572)
T 2j3l_A 394 PDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERG-------INWPT 466 (572)
T ss_dssp TTSSSBEEEEEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHHHEETTE-------ECCCT
T ss_pred cccCCcceeccceEEEEEeccCcccccccCCEEECCCCcEEeeeeeccccCHHHHHHHHHHhcCcccC-------cccCC
Confidence 1112234565555 34455776644556699999999998777665 78999
Q ss_pred CCCCceEEEEecCC-CCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEEC
Q psy17941 557 LVAPLKASILPLSS-NPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRER 635 (679)
Q Consensus 557 ~laP~~V~Vi~l~~-~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r 635 (679)
++||++|+|+|++. +++...+|.+|++.||++|++|++|+++.++|+||++|+++|+||+||||++| + +|+|+||+|
T Consensus 467 ~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~~~~~g~k~~~a~~~g~p~~iivG~~e-~-~~~v~vk~~ 544 (572)
T 2j3l_A 467 GIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKA-V-DGVVEVKIK 544 (572)
T ss_dssp TTSSCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHHCCSEEEEECGGG-G-GTEEEEEET
T ss_pred CcCCeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHhHHHHHHHhcCCCEEEEEcccc-c-CCeEEEEEc
Confidence 99999999999972 24578999999999999999999999999999999999999999999999999 6 899999999
Q ss_pred CCCceEEEehHHHHHHHHHHHhccc
Q psy17941 636 DSMTQVRVKVNEVASVIKDLSLAKI 660 (679)
Q Consensus 636 ~t~~q~~v~i~el~~~l~~l~~~~~ 660 (679)
++++|..++++++++.|+ ++.+.+
T Consensus 545 ~~~~q~~v~~~~l~~~l~-~~~~~~ 568 (572)
T 2j3l_A 545 RTGEMLEVRKEELESTLS-ILMNTT 568 (572)
T ss_dssp TTCCEEEEEHHHHHHHHH-HHCC--
T ss_pred CCCcEEEEeHHHHHHHHH-HHhccc
Confidence 999999999999999998 776543
No 6
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=2.1e-54 Score=481.16 Aligned_cols=395 Identities=18% Similarity=0.218 Sum_probs=297.6
Q ss_pred HHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCC
Q psy17941 68 AKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADL 147 (679)
Q Consensus 68 ~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~ 147 (679)
-...++.++.+++..+. .++|+++|+|.|++++++|+++|++.++.+.||+||.||+|++.++|++||||+.|.++
T Consensus 35 rdH~~lg~~l~l~~~~~----~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~e 110 (460)
T 3uh0_A 35 TMTSMVSQRQDLFMTDP----LSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADD 110 (460)
T ss_dssp HHHHHHHHHHTCEECCT----TSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGG
T ss_pred CCHHHHHHhCCCceecc----CCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccc
Confidence 34566888877764332 27999999999999999999999999967889999999999999999999999999999
Q ss_pred ceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhh
Q psy17941 148 MVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLM 227 (679)
Q Consensus 148 m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlm 227 (679)
||+....+.
T Consensus 111 my~~~d~~~----------------------------------------------------------------------- 119 (460)
T 3uh0_A 111 MFKVETTDE----------------------------------------------------------------------- 119 (460)
T ss_dssp SCEECC--------------------------------------------------------------------------
T ss_pred eEEEecCCC-----------------------------------------------------------------------
Confidence 998643210
Q ss_pred hhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCC-CCCcccccceeEeeEEEEeCCCcc
Q psy17941 228 FATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP-RSGLIRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 228 f~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p-r~Gl~R~REF~q~e~~~F~~~~~~ 306 (679)
++...+|||++++++++.|++.+. +.++||+++||+|+|||+|.++ ++||+|+|||+|+|+|+||.|++.
T Consensus 120 --------~~~~l~LrPt~~~~~~~~~~~~~~-s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~ 190 (460)
T 3uh0_A 120 --------EKEEYGLKPMNCPGHCLIFGKKDR-SYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQV 190 (460)
T ss_dssp -----------CEEECSCSHHHHHHHHTTSCC-BGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGH
T ss_pred --------CCceEEEcccCcHHHHHHHHhccc-cccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHH
Confidence 112358999999999999986643 3478999999999999999887 699999999999999999998754
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHH-HHcCCC--------ccchhhh
Q psy17941 307 SHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFM-ISVGID--------PEKLRFR 377 (679)
Q Consensus 307 ~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l-~~~g~~--------~~~~~~r 377 (679)
.. + +..++..+..++ ..+|++ ...+++.
T Consensus 191 ~~---------e----------------------------------~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~l~ 227 (460)
T 3uh0_A 191 KS---------E----------------------------------IFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFS 227 (460)
T ss_dssp HH---------H----------------------------------HHHHHHHHHHHHTTTSCCC-----CCSSCEEEEE
T ss_pred HH---------H----------------------------------HHHHHHHHHHHHHHHcCCCCcccccccceEEEEc
Confidence 21 1 122455666777 889997 2333221
Q ss_pred hccCccccccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccc
Q psy17941 378 QHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKK 457 (679)
Q Consensus 378 ~~~~~e~~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~ 457 (679)
.+. +....+..+|+ +....|......+|.++.. ...+.+++||++..
T Consensus 228 t~p--e~~~G~~~~w~-----------------~ae~~L~~~l~~~g~~~~~--------------~~g~gafygpkid~ 274 (460)
T 3uh0_A 228 TRP--DHFIGDLKVWN-----------------HAEQVLKEILEESGKPWKL--------------NPGDGAFYGPKLDI 274 (460)
T ss_dssp CCC--SSCCSCHHHHH-----------------HHHHHHHHHHHHHTCCEEE--------------ETTCSCSSCCEEEE
T ss_pred cCC--cccCCCHHHHH-----------------HHHHHHHHHHHHhCCCeeE--------------CCCccccccceEEE
Confidence 111 10001112222 1223455555555665542 13467788987643
Q ss_pred hhhHHHHHhhhcCHhHHHHHHHhhhcCCcEEEeec-CceeeeccceeEEeeeecccceeEeccceeec-ccc-HHHHHHH
Q psy17941 458 DAKTICDALAALDLNSVSAVEESLNTNGKYELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEP-SFG-IGRIMYA 534 (679)
Q Consensus 458 ~~~~i~d~L~~~~~~~~~~~~~~l~~~g~~~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~-s~G-IeRll~a 534 (679)
. +.|++++.. ++++++++.+ +.+|++. |... +|+..+|.|++. ||| +||++++
T Consensus 275 ~---~~d~~gr~~------------q~~Tiqld~~~~~rf~l~--------y~~~-~g~~~~P~~ih~~~~Gg~eRli~~ 330 (460)
T 3uh0_A 275 M---VTDHLRKTH------------QVATIQLDFQLPERFDLK--------FKDQ-DNSYKRPIMIHRATFGSIERFMAL 330 (460)
T ss_dssp E---EECTTSCEE------------EEEEEEEESHHHHHTTCC--------EECT-TSCEECCEEEEEEEEEEHHHHHHH
T ss_pred E---EEccCCCee------------eecccccccccccccceE--------EECC-CCCccCcEEEecCcchHHHHHHHH
Confidence 2 223332211 2344444333 5566665 4443 466778988753 565 9999999
Q ss_pred HHHhccccCCCccccccccCCCCCCCceEEEEecCCC-CChHHHHHHHHHHHHHC--------------CCeEEEeCCCC
Q psy17941 535 LFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSN-PEFQPFIKMLSSELSQN--------------GISFKVDDSGG 599 (679)
Q Consensus 535 l~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~-~e~~~~a~~l~~~Lr~~--------------Gi~v~~D~~~~ 599 (679)
|+|++. +.||+|+||+||+|+|++.+ ++..++|.+|++.||++ ||+|++|+++.
T Consensus 331 Lie~~~-----------g~~P~~laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~~ 399 (460)
T 3uh0_A 331 LIDSNE-----------GRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNE 399 (460)
T ss_dssp HHHHHT-----------TCCCGGGCSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCSS
T ss_pred HHHHcC-----------CCCCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCCC
Confidence 999752 58999999999999999864 33789999999999998 99999999999
Q ss_pred CHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCc-eEEEehHHHHHHHHHHHhc
Q psy17941 600 SIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMT-QVRVKVNEVASVIKDLSLA 658 (679)
Q Consensus 600 slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~-q~~v~i~el~~~l~~l~~~ 658 (679)
++|+||++|+++|+||+||||++|+ ++|+|+||+|++++ |..++++++++.|.++++.
T Consensus 400 ~lg~k~r~Ad~~g~p~~ivvG~~E~-~~g~Vtvr~r~~~e~q~~v~~~el~~~l~~~~~~ 458 (460)
T 3uh0_A 400 PVGYRIKSAILKNYSYLIIVGDEEV-QLQKYNIRERDNRKSFEKLTMSQIWEKFIELEKN 458 (460)
T ss_dssp CHHHHHHHHHHHTCSEEEEECHHHH-HHTCEEEEEGGGTTSCEEECHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCEEEEEcchhh-hCCeEEEEECCCCceeEEeeHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 89999999999999 9999999999999988764
No 7
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=6.9e-53 Score=463.06 Aligned_cols=389 Identities=19% Similarity=0.226 Sum_probs=296.3
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCce
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMV 149 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~ 149 (679)
+.+++++.+++..+. .++|+|||+|.|++++++|+++|++.| .++||+||.||+|++.++|++||||+.|+++||
T Consensus 3 h~~l~~~~~l~~~~~----~~~G~~d~lP~g~~~~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~ 77 (401)
T 1evl_A 3 HRKIGKQLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSKL-KEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMF 77 (401)
T ss_dssp HHHHHHHTTCEECCT----TSTTCCEECHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCC
T ss_pred hHHHHHhCCceEecC----CCCcceEECchHHHHHHHHHHHHHHHH-HHcCCEEEECCeeccHHHHHhcCcHhhhchhhE
Confidence 456888888863222 279999999999999999999999999 899999999999999999999999999999998
Q ss_pred eeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhh
Q psy17941 150 KDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFA 229 (679)
Q Consensus 150 ~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~ 229 (679)
+ ...
T Consensus 78 ~-~d~--------------------------------------------------------------------------- 81 (401)
T 1evl_A 78 T-TSS--------------------------------------------------------------------------- 81 (401)
T ss_dssp E-EEE---------------------------------------------------------------------------
T ss_pred e-Eec---------------------------------------------------------------------------
Confidence 7 321
Q ss_pred cccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCC-CCCCcccccceeEeeEEEEeCCCcchh
Q psy17941 230 TQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEIS-PRSGLIRVREFTMAEIEHFCDPTDKSH 308 (679)
Q Consensus 230 ~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~-pr~Gl~R~REF~q~e~~~F~~~~~~~~ 308 (679)
+++..+||||+|+++++.|++.+..+ ++||+++||+|+|||+|.+ |++||+|+|||+|+|+|+||.+++ ++
T Consensus 82 ------~~~~~~LrP~~~~~~~~~~~~~~~s~-~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~-~~ 153 (401)
T 1evl_A 82 ------ENREYCIKPMNCPGHVQIFNQGLKSY-RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ-IR 153 (401)
T ss_dssp ------TTEEEEECSCSHHHHHHHHTSSCCBG-GGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGG-HH
T ss_pred ------CCceEEEcCCCCHHHHHHHHhhhhhh-hhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHH-HH
Confidence 11245999999999999998766543 5899999999999999988 899999999999999999998654 45
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccc
Q psy17941 309 AKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYA 388 (679)
Q Consensus 309 ~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya 388 (679)
..|..+.+++. .+|.++| -....+.++...++..-+.+.+.........++..+|+++. ...++.+||+
T Consensus 154 ~e~~e~i~~~~-~~~~~lg----l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~------~~~~~~~~y~ 222 (401)
T 1evl_A 154 DEVNGCIRLVY-DMYSTFG----FEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFE------YQLGEGAFYG 222 (401)
T ss_dssp HHHHHHHHHHH-HHHHTTT----CSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCE------EETTCSBTTB
T ss_pred HHHHHHHHHHH-HHHHHcC----CCceEEEEecCCcccCCCHHHHHHHHHHHHHHHHhcCCCce------ecCCCccccC
Confidence 67888888887 8888764 11122233332122211111111112445667788888654 2335778888
Q ss_pred cCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhh
Q psy17941 389 CDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAA 468 (679)
Q Consensus 389 ~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~ 468 (679)
+. +|+.+..+.||....|.. ..+|+++..
T Consensus 223 ~~-~d~~~~~~~G~~~~~gt~-~~d~~l~~~------------------------------------------------- 251 (401)
T 1evl_A 223 PK-IEFTLYDCLDRAWQCGTV-QLDFSLPSR------------------------------------------------- 251 (401)
T ss_dssp CE-EEEEEECTTCCEEEEEEE-EEESSHHHH-------------------------------------------------
T ss_pred CC-cCeEEEecCCCeEEeeee-eeccccccc-------------------------------------------------
Confidence 74 665554444654433321 112221100
Q ss_pred cCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccc--cHHHHHHHHHHhccccCCCc
Q psy17941 469 LDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSF--GIGRIMYALFEHNFKMRDGD 546 (679)
Q Consensus 469 ~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~--GIeRll~al~e~~~~~~~~~ 546 (679)
+ |.. |.. .+|+..+|.|++.++ |++|++++|++++.
T Consensus 252 ------------~-----------~~~------------y~~-~~g~~~~p~~~~~~~~GgieRli~~l~e~~~------ 289 (401)
T 1evl_A 252 ------------L-----------SAS------------YVG-EDNERKVPVMIHRAILGSMERFIGILTEEFA------ 289 (401)
T ss_dssp ------------T-----------TCC------------EEC-TTSCEECCEEEEEEEEEEHHHHHHHHHHHHT------
T ss_pred ------------c-----------CCE------------EEC-CCCCCcCcEEEEecCCCcHHHHHHHHHHHhC------
Confidence 0 001 111 123455787766344 89999999998754
Q ss_pred cccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCC
Q psy17941 547 EQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKE 626 (679)
Q Consensus 547 ~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~ 626 (679)
..||++++|++|+|+|+++ +...+|.+|++.||++|++|++|+++.++|+||++|+++|+||+||||++|+ +
T Consensus 290 -----~~~p~~~ap~~v~vi~~~~--~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~k~~~A~~~g~p~~iiiG~~e~-~ 361 (401)
T 1evl_A 290 -----GFFPTWLAPVQVVIMNITD--SQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEV-E 361 (401)
T ss_dssp -----TCCCTTTCSSCEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECHHHH-H
T ss_pred -----CcCCCCCCCeEEEEEecCH--HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECcchh-h
Confidence 3699999999999999974 4889999999999999999999999899999999999999999999999999 7
Q ss_pred CCeEEEEECCCCceEEEehHHHHHHHHHHHhcc
Q psy17941 627 PHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659 (679)
Q Consensus 627 ~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~ 659 (679)
+|+|+||+|+|++|..|+++++++.|++++..+
T Consensus 362 ~~~v~vk~~~~~~q~~v~~~el~~~l~~~~~~~ 394 (401)
T 1evl_A 362 SGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSR 394 (401)
T ss_dssp HTEEEEEETTSCEEEEEEHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCceEEeeHHHHHHHHHHHHhhh
Confidence 999999999999999999999999998877643
No 8
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=1.2e-53 Score=494.90 Aligned_cols=393 Identities=20% Similarity=0.251 Sum_probs=297.5
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCce
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMV 149 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~ 149 (679)
+..|.++.++++.+.++ ++|++||+|.|++++++|+++|++.| .++||+||.||+|++.++|++||||+.|.++||
T Consensus 243 hr~lg~~l~l~~~~~~~---~~G~~~~lP~g~~~~~~l~~~ir~~~-~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf 318 (645)
T 1nyr_A 243 HRKIGKELELFTNSQLV---GAGLPLWLPNGATIRREIERYIVDKE-VSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMF 318 (645)
T ss_dssp HHHHHHHTTCEEEETTT---EEEEEEECHHHHHHHHHHHHHHHHHH-HHTTEEECBCCSEEETHHHHHHTHHHHCTTSSC
T ss_pred HHHHhhhcceEEecccC---CCceeEECCCHHHHHHHHHHHHHHHH-HHcCCEEEECCeeccHHHHhhCCCccccccCcc
Confidence 45588888887766543 69999999999999999999999999 999999999999999999999999999999998
Q ss_pred eeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhh
Q psy17941 150 KDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFA 229 (679)
Q Consensus 150 ~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~ 229 (679)
+....
T Consensus 319 ~~~d~--------------------------------------------------------------------------- 323 (645)
T 1nyr_A 319 PPMQL--------------------------------------------------------------------------- 323 (645)
T ss_dssp CCEEE---------------------------------------------------------------------------
T ss_pred eeEec---------------------------------------------------------------------------
Confidence 74221
Q ss_pred cccCCCCC-cccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCC-CCCCcccccceeEeeEEEEeCCCcch
Q psy17941 230 TQIGPSGL-IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEIS-PRSGLIRVREFTMAEIEHFCDPTDKS 307 (679)
Q Consensus 230 ~~ig~~g~-~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~-pr~Gl~R~REF~q~e~~~F~~~~~~~ 307 (679)
++ +..+|||++|+++++.|++.+..+ ++||+++||+|+|||+|.+ |++||+|+|||+|+|+|+||.|++..
T Consensus 324 ------~~~~~~~LrP~~~~~~~~~~~~~~~sy-r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~ 396 (645)
T 1nyr_A 324 ------DETESMVLRPMNCPHHMMIYANKPHSY-RELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIK 396 (645)
T ss_dssp ------TTTEEEEECSSSHHHHHHHHHTSCCBG-GGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHH
T ss_pred ------CCCeEEEeCCCCCHHHHHHHHhhhhhc-cCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHH
Confidence 11 245899999999999999765433 5899999999999999988 68999999999999999999987654
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCc--ccc
Q psy17941 308 HAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGN--EMA 385 (679)
Q Consensus 308 ~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~--e~~ 385 (679)
. .|.. ++..+..++..+|+++-++++.....+ +..
T Consensus 397 d-~~~e------------------------------------------~i~~~~~~l~~lGl~~~~~~l~~~~~~~~e~~ 433 (645)
T 1nyr_A 397 E-EFKR------------------------------------------VVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKY 433 (645)
T ss_dssp H-HHHH------------------------------------------HHHHHHHHHHHTTCCCEEEEEEECCCCCSSSS
T ss_pred H-HHHH------------------------------------------HHHHHHHHHHHcCCCeEEEEEeCCCcccchhh
Confidence 2 1211 344456677889996544444332211 222
Q ss_pred ccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHH
Q psy17941 386 HYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDA 465 (679)
Q Consensus 386 ~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~ 465 (679)
+++..+|+ ....++..+...+|.++.. .....+++||++... +.|+
T Consensus 434 ~g~~e~~~-----------------~~~~~l~~~l~~~g~~~~~--------------~~~~~~~ygpki~~~---~~d~ 479 (645)
T 1nyr_A 434 FDDDDMWN-----------------KAENMLKEAADELGLSYEE--------------AIGEAAFYGPKLDVQ---VKTA 479 (645)
T ss_dssp SCCHHHHH-----------------HHHHHHHHHHHHHCCCCCC--------------EESCSBTTBCEEEEE---ECCT
T ss_pred cCChHHHH-----------------HHHHHHHHHHHHcCCCeEe--------------cCCCCceeCCcccee---hhhh
Confidence 22222222 1223455555556655432 124567889865432 1233
Q ss_pred hhhcCHhHHHHHHHhhhcCCcEEEeec-CceeeeccceeEEeeeecccceeEeccceeecc--ccHHHHHHHHHHhcccc
Q psy17941 466 LAALDLNSVSAVEESLNTNGKYELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPS--FGIGRIMYALFEHNFKM 542 (679)
Q Consensus 466 L~~~~~~~~~~~~~~l~~~g~~~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s--~GIeRll~al~e~~~~~ 542 (679)
+++.. ++|+++++.. +++|++ +|+.. .|+...|.|++.+ .|+||++++|+|++.
T Consensus 480 lg~~~------------~~gtiq~D~~l~~~~d~--------~Y~~~-~g~~~~P~~ih~~~~GgieR~i~~liE~~~-- 536 (645)
T 1nyr_A 480 MGKEE------------TLSTAQLDFLLPERFDL--------TYIGQ-DGEHHRPVVIHRGVVSTMERFVAFLTEETK-- 536 (645)
T ss_dssp TSCCE------------EEEEEEEESSHHHHTTC--------CEECT-TSCEECCEEEEEEEEEEHHHHHHHHHHHHT--
T ss_pred hCchh------------hcceEEeecccccccce--------EEECC-CCCccCcEEEEeccCCcHHHHHHHHHHHhc--
Confidence 32211 2333333322 223322 46654 4566789887643 369999999999853
Q ss_pred CCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCC
Q psy17941 543 RDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFD 622 (679)
Q Consensus 543 ~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~ 622 (679)
..||+|+||++|+|+|++ +++..++|.+|++.||++|++|++|+++.++|+||++|++.|+||+||||++
T Consensus 537 ---------~~~P~~lap~qv~vip~~-~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~g~k~~~a~~~g~p~~iivG~~ 606 (645)
T 1nyr_A 537 ---------GAFPTWLAPKQVQIIPVN-VDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDK 606 (645)
T ss_dssp ---------TCCCTTTCSSCEEEEESS-HHHHHHHHHHHHHHHHTTTCCEEECCSSCCHHHHHHHHHHHTCSEEEEECHH
T ss_pred ---------CCCCCCCCCceEEEEEcc-cHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEccc
Confidence 479999999999999997 1348899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHhcc
Q psy17941 623 TLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659 (679)
Q Consensus 623 El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~ 659 (679)
|+ ++|+|+||+|++++|..++++++++.|.+++..+
T Consensus 607 e~-~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~~ 642 (645)
T 1nyr_A 607 EV-ENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLK 642 (645)
T ss_dssp HH-HTTEEEEEETTSSCCCEEEHHHHHHHHHHHHHTT
T ss_pred hh-hCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhhh
Confidence 99 8999999999999999999999999998877643
No 9
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=1.1e-52 Score=485.44 Aligned_cols=387 Identities=19% Similarity=0.218 Sum_probs=284.4
Q ss_pred HHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCcee
Q psy17941 71 EDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVK 150 (679)
Q Consensus 71 ~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~ 150 (679)
..+.++.++++.+. .++|+|+|+|.|++++++|+++||+.| .++||+||.||+|++.++|++||||++|.++||+
T Consensus 245 ~~lg~~l~l~~~~~----~~~G~~~~lP~g~~l~~~l~~~~r~~~-~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~ 319 (642)
T 1qf6_A 245 RKIGKQLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSKL-KEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT 319 (642)
T ss_dssp HHHHHHTTCEECCT----TSTTCCEECHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE
T ss_pred HHHHHhcCcccccc----CCCCcEEECCcHHHHHHHHHHHHHHHH-HHcCCEEEECCcCccHHHHhhcCcccccccccee
Confidence 34666655544332 279999999999999999999999999 8999999999999999999999999999999998
Q ss_pred eCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhc
Q psy17941 151 DLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFAT 230 (679)
Q Consensus 151 d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~ 230 (679)
...+
T Consensus 320 -~d~~--------------------------------------------------------------------------- 323 (642)
T 1qf6_A 320 -TSSE--------------------------------------------------------------------------- 323 (642)
T ss_dssp -EEET---------------------------------------------------------------------------
T ss_pred -eecC---------------------------------------------------------------------------
Confidence 3211
Q ss_pred ccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCC-CCCCcccccceeEeeEEEEeCCCcchhh
Q psy17941 231 QIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEIS-PRSGLIRVREFTMAEIEHFCDPTDKSHA 309 (679)
Q Consensus 231 ~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~-pr~Gl~R~REF~q~e~~~F~~~~~~~~~ 309 (679)
++..||||++|+++++.|++.+..+ ++||+++||+|+|||+|.+ |++||+|+|||+|+|+|+||.|++. ..
T Consensus 324 ------~~~~~LrP~~~~~~~~~~~~~~~sy-r~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~-~~ 395 (642)
T 1qf6_A 324 ------NREYCIKPMNCPGHVQIFNQGLKSY-RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQI-RD 395 (642)
T ss_dssp ------TEEEEECSSSHHHHHHHHTTSCEEG-GGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGH-HH
T ss_pred ------CceEEecCCCCHHHHHHHHhhhhhc-cccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHH-HH
Confidence 1234999999999999998766443 6899999999999999988 7999999999999999999998654 45
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCcccccccc
Q psy17941 310 KFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYAC 389 (679)
Q Consensus 310 ~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~ 389 (679)
.|..+.+++. .+|.++| -....+.++...++.+-+.+.+....+....++...|+++.. ..++.+||.+
T Consensus 396 e~~~~i~~~~-~i~~~lG----l~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~------~~g~~afygp 464 (642)
T 1qf6_A 396 EVNGCIRLVY-DMYSTFG----FEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEY------QLGEGAFYGP 464 (642)
T ss_dssp HHHHHHHHHH-HHHGGGT----CCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEE------ETTCSCTTCC
T ss_pred HHHHHHHHHH-HHHHHcC----CCceEEEEecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEE------cCCCcccccC
Confidence 5666666666 6666543 111111222211221111111111112344455555555421 2234455555
Q ss_pred CccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhc
Q psy17941 390 DCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAAL 469 (679)
Q Consensus 390 ~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~ 469 (679)
+ +|+.+....||....
T Consensus 465 k-~d~~~~d~~G~~~~~--------------------------------------------------------------- 480 (642)
T 1qf6_A 465 K-IEFTLYDCLDRAWQC--------------------------------------------------------------- 480 (642)
T ss_dssp E-EEEEEECTTCCEEEE---------------------------------------------------------------
T ss_pred c-ccEEEEccCCceEEe---------------------------------------------------------------
Confidence 3 343333223332211
Q ss_pred CHhHHHHHHHhhhcCCcEEEeec-CceeeeccceeEEeeeecccceeEeccceeeccc--cHHHHHHHHHHhccccCCCc
Q psy17941 470 DLNSVSAVEESLNTNGKYELLVD-DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSF--GIGRIMYALFEHNFKMRDGD 546 (679)
Q Consensus 470 ~~~~~~~~~~~l~~~g~~~~~~~-g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~--GIeRll~al~e~~~~~~~~~ 546 (679)
|+++++.+ +++|++. |.. .+|+...|.|++.++ |++|++++|+|++.
T Consensus 481 ---------------gti~~df~l~~r~~~~--------y~~-~~g~~~~P~~~hrai~G~ieR~i~~liE~~~------ 530 (642)
T 1qf6_A 481 ---------------GTVQLDFSLPSRLSAS--------YVG-EDNERKVPVMIHRAILGSMERFIGILTEEFA------ 530 (642)
T ss_dssp ---------------EEEEEESSHHHHTTCC--------EEC-TTSCEECCEEEEEEEEEEHHHHHHHHHHHHT------
T ss_pred ---------------eeEEEeccCCccCCCE--------EEe-cCCCCcCcEEEEeccCCCHHHHHHHHHHHhc------
Confidence 12222111 2222221 222 234556788876344 79999999999864
Q ss_pred cccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCC
Q psy17941 547 EQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKE 626 (679)
Q Consensus 547 ~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~ 626 (679)
..||+|+||++|+|+|+++ +..++|.+|++.||++||+|++|+++.++|+||++|++.|+||+||||++|+ +
T Consensus 531 -----~~~P~~laP~qv~vipi~~--~~~~~a~~v~~~L~~~Gi~v~~D~~~~~~g~kir~a~~~g~p~~ivvG~~E~-~ 602 (642)
T 1qf6_A 531 -----GFFPTWLAPVQVVIMNITD--SQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEV-E 602 (642)
T ss_dssp -----TCCCTTTCSSCEEEEESSH--HHHHHHHHHHHHHHTTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECTTTG-G
T ss_pred -----CCCCcccCCceEEEEEeCH--HHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECchhh-h
Confidence 4799999999999999974 4889999999999999999999999999999999999999999999999999 8
Q ss_pred CCeEEEEECCCCceEEEehHHHHHHHHHHHhcc
Q psy17941 627 PHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659 (679)
Q Consensus 627 ~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~ 659 (679)
+|+|+||+|++++|..++++++++.|.+++.++
T Consensus 603 ~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~~ 635 (642)
T 1qf6_A 603 SGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSR 635 (642)
T ss_dssp GCCEEEEESSSCEEEEECHHHHHHHHHHHHHTT
T ss_pred cCeEEEEECCCCceEEEEHHHHHHHHHHHHhhh
Confidence 999999999999999999999999998877654
No 10
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=8.9e-53 Score=469.39 Aligned_cols=400 Identities=21% Similarity=0.265 Sum_probs=283.1
Q ss_pred HHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCc
Q psy17941 69 KMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLM 148 (679)
Q Consensus 69 ~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m 148 (679)
...++|.|+||+.++ ++|+|||+|.|++++++|+++|+++| .++||+||.||+|++.++|++||||+.|+++|
T Consensus 41 ~~h~ll~r~g~i~~~------~~G~~d~lP~g~~~~~~i~~~ir~~~-~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em 113 (458)
T 2i4l_A 41 VSHRLMLRAGMLRQE------AAGIYAWLPLGHRVLKKIEQIVREEQ-NRAGAIELLMPTLQLADLWRESGRYDAYGPEM 113 (458)
T ss_dssp HHHHHHHHTTCEEEE------ETTEEEECHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHTHHHHSCTTS
T ss_pred chHHHHhhcCCeecc------CCcceEECCCHHHHHHHHHHHHHHHH-HHcCCEEEEcCccCcHHHHHhcCCccccccce
Confidence 456689899998875 59999999999999999999999999 99999999999999999999999999999999
Q ss_pred eeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhh
Q psy17941 149 VKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMF 228 (679)
Q Consensus 149 ~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf 228 (679)
|+....+.. .++|.||+||+.+.+.+..+.+
T Consensus 114 ~~~~d~~~~--------------------------------~~~LrPt~ee~t~~i~r~~~~s----------------- 144 (458)
T 2i4l_A 114 LRIADRHKR--------------------------------ELLYGPTNEEMITEIFRAYIKS----------------- 144 (458)
T ss_dssp EEEECTTCC--------------------------------EEEECSCCHHHHHHHHHHHCCB-----------------
T ss_pred EEEEeCCCC--------------------------------eEEECCCChHHHHHHHHHHHhh-----------------
Confidence 986432210 0355666666555555443332
Q ss_pred hcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchh
Q psy17941 229 ATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSH 308 (679)
Q Consensus 229 ~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~ 308 (679)
| ++||+++||||+|||+|++|+.||+|+|||+|+|+|+|+.+.+.++
T Consensus 145 ------------~---------------------~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad 191 (458)
T 2i4l_A 145 ------------Y---------------------KSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGAR 191 (458)
T ss_dssp ------------G---------------------GGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHH
T ss_pred ------------c---------------------cccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHH
Confidence 2 6899999999999999999999999999999999999998777777
Q ss_pred hhHHHHHHHHHHHHHHHhh-----------ccCCCCce-EEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhh
Q psy17941 309 AKFSDVETTQMMVLYSACN-----------QMDGKPAE-RITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRF 376 (679)
Q Consensus 309 ~~~~~v~d~~~~~lf~~~~-----------~~~g~~~~-~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~ 376 (679)
..|..+.+++. .+|.++| .+||..++ |+.+.+.+++.+..| .+. |.++. ....
T Consensus 192 ~e~~~~~~~~~-~i~~~lGl~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~-~~~-~~~n~-----------~~~~- 256 (458)
T 2i4l_A 192 KSYNKMFVAYL-RTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYID-RDV-LNLPV-----------PDEN- 256 (458)
T ss_dssp HHHHHHHHHHH-HHHHTTTCCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEE-GGG-GGCCC-----------CCTT-
T ss_pred HHHHHHHHHHH-HHHHHcCCceEEEEccccccCCccchhhhhhhhcCcceEEec-ccc-cccCH-----------HHHh-
Confidence 88888888888 9999986 56777777 888888888877666 343 21110 0000
Q ss_pred hhccCccccccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCcccc
Q psy17941 377 RQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFK 456 (679)
Q Consensus 377 r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~ 456 (679)
.. ... +++.+.. . +..... +.... .+... +. ...++.++.
T Consensus 257 -----~~---~~~---~l~~~l~------------------~---~~~~~~-~~~~~-~~g~~--~~----~~~~~~~l~ 296 (458)
T 2i4l_A 257 -----VD---YDG---DLTPIIK------------------Q---WTSVYA-ATEDV-HEPAR--YE----SEVPEANRL 296 (458)
T ss_dssp -----CC---TTS---CCHHHHH------------------H---HHHSCE-EETTT-CCTTH--HH----HHSCTTTEE
T ss_pred -----cc---ccH---hHHHHHh------------------c---Cchhhh-cChhh-ccccc--cc----CCCCCcCce
Confidence 00 000 0000000 0 000000 00000 00000 00 000111000
Q ss_pred chhhHHHHHhhhcCHhHHHHHHHhhhcCCcEEEeec-Cceeeeccce--eEEeeeecccceeEeccc-eeeccccHHHHH
Q psy17941 457 KDAKTICDALAALDLNSVSAVEESLNTNGKYELLVD-DKEFVLTKDM--ISIKKSTKTFHVEEIIPS-VIEPSFGIGRIM 532 (679)
Q Consensus 457 ~~~~~i~d~L~~~~~~~~~~~~~~l~~~g~~~~~~~-g~~f~i~~~~--v~~~~y~~~~~~~~~~P~-vi~~s~GIeRll 532 (679)
....++ |..|++.... ...-.|.+ .+|.. .|+ ++++++|++|++
T Consensus 297 ------------------------------~~rgl~~G~iFelg~~~s~~~g~ry~~-~~G~~-~p~~~~gfgiGveRli 344 (458)
T 2i4l_A 297 ------------------------------NTRGIEVGQIFYFGTKYSDSMKANVTG-PDGTD-APIHGGSYGVGVSRLL 344 (458)
T ss_dssp ------------------------------EEEEEEEEEEEEEETHHHHHTTCEEEC-TTSCE-EECEEEEEEEEHHHHH
T ss_pred ------------------------------eeeeeccCcEEEecccccccCCcEEEC-CCCCE-eceEEeeecccHHHHH
Confidence 000000 2233332000 00001222 13333 443 445556789999
Q ss_pred HHHHHhccccCCCccccccccCCCCCCCceEEEEecC-CCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHh
Q psy17941 533 YALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLS-SNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEI 611 (679)
Q Consensus 533 ~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~-~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~ 611 (679)
++++|+++++.+ +.||+++||++|+|+|++ ++++..++|.+|++.||++|++|++|+++.++|+||++|+++
T Consensus 345 ~al~e~~~d~~g-------~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~~~ad~~ 417 (458)
T 2i4l_A 345 GAIIEACHDDNG-------IIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLI 417 (458)
T ss_dssp HHHHHHSEETTE-------ECCCTTTCSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred HHHHHhhccccC-------CcCCcccCCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHHHHHhc
Confidence 999999887766 799999999999999996 234578999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHH
Q psy17941 612 AIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVI 652 (679)
Q Consensus 612 Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l 652 (679)
|+||+||||++|+ ++|+|+||+|+|++|..|+++++++.|
T Consensus 418 g~p~~iivG~~e~-~~g~v~vr~r~~~~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 418 GIPWQIHVGPRGL-AEGKVELKRRSDGARENLALADVVARL 457 (458)
T ss_dssp TCSEEEEECHHHH-TTTEEEEEETTTCCEEEEETTTTTCC-
T ss_pred CCCEEEEECCchh-hCCEEEEEECCCCcEEEEeHHHHHHhh
Confidence 9999999999999 899999999999999999999987644
No 11
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=1e-51 Score=461.85 Aligned_cols=362 Identities=18% Similarity=0.237 Sum_probs=264.5
Q ss_pred HHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhh-cCCcccccC
Q psy17941 68 AKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKA-SGHVDRFAD 146 (679)
Q Consensus 68 ~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~-SGh~~~f~d 146 (679)
....++++++||+.++ .++|+|||+|.|+++|++|+++|+++| .++||+||.||+|++.++|.+ ||||+.|++
T Consensus 16 ~~~~~l~~~~~li~~~-----~~~G~~d~lP~g~~l~~~I~~~~r~~~-~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~ 89 (477)
T 1hc7_A 16 EWYLEVIQKAELADYG-----PVRGTIVVRPYGYAIWENIQQVLDRMF-KETGHQNAYFPLFIPMSFLRKEAEHVEGFSP 89 (477)
T ss_dssp HHHHHHHHHTTSEEEC-----SSTTCEEECHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEESTTC---------CCT
T ss_pred HHHHHHHHHCCCeeec-----CCCCeEEECccHHHHHHHHHHHHHHHH-HHcCCEEEecCccccHHHHhhcCCccccccc
Confidence 3567899999998764 279999999999999999999999999 999999999999999999987 999999999
Q ss_pred CceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhh
Q psy17941 147 LMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNL 226 (679)
Q Consensus 147 ~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnl 226 (679)
+||+....|. ++
T Consensus 90 emy~~~d~g~----~~---------------------------------------------------------------- 101 (477)
T 1hc7_A 90 ELAVVTHAGG----EE---------------------------------------------------------------- 101 (477)
T ss_dssp TCEEEEEESS----SE----------------------------------------------------------------
T ss_pred ceEEEECCCC----cc----------------------------------------------------------------
Confidence 9998543321 00
Q ss_pred hhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcc
Q psy17941 227 MFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 227 mf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~ 306 (679)
.++..+||||+|++++++|++.+..+ ++||+++||||+|||+|++|+ ||+|+|||+|+|+|+|+.+.+.
T Consensus 102 ---------l~~~l~LRP~~~~~i~~~~~~~~~s~-r~LP~rl~qig~vfR~E~~~r-Gl~R~REF~q~d~~~~~~~~~~ 170 (477)
T 1hc7_A 102 ---------LEEPLAVRPTSETVIGYMWSKWIRSW-RDLPQLLNQWGNVVRWEMRTR-PFLRTSEFLWQEGHTAHATREE 170 (477)
T ss_dssp ---------EEEEEEECSCSHHHHHHHHHHHCCBG-GGCCEEEEEEEEEECCCSSCB-TTTBCSEEEEEEEEEEESSHHH
T ss_pred ---------CCCeEEEcCCCcHHHHHHHHhhhhcc-ccCCeeeEeecCEEeCCCCCC-CcceeEEEEEccEEEEeCCHHH
Confidence 02346999999999999999887543 589999999999999998887 9999999999999996654444
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHH-HHcCCCccchhhhhccCcccc
Q psy17941 307 SHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFM-ISVGIDPEKLRFRQHMGNEMA 385 (679)
Q Consensus 307 ~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l-~~~g~~~~~~~~r~~~~~e~~ 385 (679)
+...+.. ++.....++ ..+|++.. + ...+++.
T Consensus 171 ad~E~~~------------------------------------------~l~~~~~i~~~~Lgl~~~-~----~~~~~~e 203 (477)
T 1hc7_A 171 AEEEVRR------------------------------------------MLSIYARLAREYAAIPVI-E----GLKTEKE 203 (477)
T ss_dssp HHHHHHH------------------------------------------HHHHHHHHHHHHHCCCCE-E----EECCTTT
T ss_pred HHHHHHH------------------------------------------HHHHHHHHHHHhcCCeEE-E----EeCChHH
Confidence 3222222 222334555 57888732 2 1222223
Q ss_pred ccc--cCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHH
Q psy17941 386 HYA--CDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTIC 463 (679)
Q Consensus 386 ~ya--~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~ 463 (679)
+|+ ..+|++|.+++.|- .+++ .....+|..|.
T Consensus 204 ~~~g~~~~~~ie~~~~dgr-----------------------~~~~----------------gt~~~lg~~~s------- 237 (477)
T 1hc7_A 204 KFAGAVYTTTIEALMKDGK-----------------------ALQA----------------GTSHYLGENFA------- 237 (477)
T ss_dssp SCTTSSEEEEEEEECTTSC-----------------------EEEE----------------EEEEEEETHHH-------
T ss_pred hcCCcccceEEEEEcCCCc-----------------------EEEE----------------eeeEEcccccc-------
Confidence 333 35677776654330 0000 00000111110
Q ss_pred HHhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccH-HHHHHHHHHhcccc
Q psy17941 464 DALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGI-GRIMYALFEHNFKM 542 (679)
Q Consensus 464 d~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GI-eRll~al~e~~~~~ 542 (679)
. .+ |.+| ... .|....++ ++|||+ +|++++|++++.++
T Consensus 238 ~---------------~~-----------g~~y------------~~~-~G~~~~~~--~~~~GigeRli~~lie~~~d~ 276 (477)
T 1hc7_A 238 R---------------AF-----------DIKF------------QDR-DLQVKYVH--TTSWGLSWRFIGAIIMTHGDD 276 (477)
T ss_dssp H---------------HT-----------TCEE------------ECT-TSCEEECE--EEEEEEETHHHHHHHHHHCBT
T ss_pred c---------------cc-----------CeEE------------ECC-CCCEEeee--EeeccHHHHHHHHHHHHhCcc
Confidence 0 00 1111 111 22222233 345555 69999999988776
Q ss_pred CCCccccccccCCCCCCCceEEEEecCCCC---ChHHHHHHHHHHHHHCCCeEEEeCC-CCCHHHHHHHHHHhCCCEEEE
Q psy17941 543 RDGDEQRTYLALPPLVAPLKASILPLSSNP---EFQPFIKMLSSELSQNGISFKVDDS-GGSIGKRYARTDEIAIPFGIT 618 (679)
Q Consensus 543 ~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~---e~~~~a~~l~~~Lr~~Gi~v~~D~~-~~slgkq~k~Ad~~Gip~~Ii 618 (679)
.| +.||+++||++|+|+|++.++ ++.++|.+|++.||++||+|++|++ +.++|+||++|+++|+||+||
T Consensus 277 ~g-------l~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g~k~~~a~~~G~p~~ii 349 (477)
T 1hc7_A 277 RG-------LVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVE 349 (477)
T ss_dssp TB-------CCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEE
T ss_pred cc-------ccCCcccCCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHhhcCCCEEEE
Confidence 66 799999999999999997533 4789999999999999999999998 899999999999999999999
Q ss_pred EeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 619 IDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 619 VG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
||++|+ ++|+|+||+|+ ++|..|+++++++.|.+++.
T Consensus 350 iG~~el-~~~~V~vr~r~-~eq~~v~~~el~~~l~~~l~ 386 (477)
T 1hc7_A 350 LGPKDL-EGGQAVLASRL-GGKETLPLAALPEALPGKLD 386 (477)
T ss_dssp ECHHHH-HTTEEEEEETT-SCCCEEEGGGHHHHHHHHHH
T ss_pred ECcchh-cCCEEEEEEec-CceEEEeHHHHHHHHHHHHH
Confidence 999999 89999999999 99999999999998876654
No 12
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=1e-51 Score=464.30 Aligned_cols=366 Identities=20% Similarity=0.228 Sum_probs=286.1
Q ss_pred HHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhh-cCCcccccC
Q psy17941 68 AKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKA-SGHVDRFAD 146 (679)
Q Consensus 68 ~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~-SGh~~~f~d 146 (679)
....+++++.|++.++. +++|+|+|+|.|++++++|+++|++.| .+ ||+||.||+|++.++|.+ ||||+.|.+
T Consensus 42 ~~~~~l~~~~glid~~~----~~~G~~~~~P~g~~l~~~i~~~~~~~~-~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~ 115 (501)
T 1nj1_A 42 EWFHNILEEAEIIDQRY----PVKGMHVWMPHGFMIRKNTLKILRRIL-DR-DHEEVLFPLLVPEDELAKEAIHVKGFED 115 (501)
T ss_dssp HHHHHHHHHTTCEECCC----SSTTCCEECHHHHHHHHHHHHHHHHHH-TT-TCEECCCCSEEEHHHHTTSHHHHHHTTT
T ss_pred HhHHHHHHHCCCccccC----CCCceEEECccHHHHHHHHHHHHHHHH-Hc-CCEEEecCcEecHHHHhcccCCcccCCc
Confidence 45678999999987632 369999999999999999999999999 88 999999999999999987 999999999
Q ss_pred CceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhh
Q psy17941 147 LMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNL 226 (679)
Q Consensus 147 ~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnl 226 (679)
+||+....|. + +
T Consensus 116 emy~~~d~g~-----------------------------------------~-------~-------------------- 127 (501)
T 1nj1_A 116 EVYWVTHGGL-----------------------------------------S-------K-------------------- 127 (501)
T ss_dssp TCCEEEEETT-----------------------------------------E-------E--------------------
T ss_pred ceEEEecCCC-----------------------------------------c-------c--------------------
Confidence 9998543221 0 0
Q ss_pred hhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCccccccee-EeeEEEEeCCCc
Q psy17941 227 MFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFT-MAEIEHFCDPTD 305 (679)
Q Consensus 227 mf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~-q~e~~~F~~~~~ 305 (679)
.+...||||++++++++.|++.+. +.++||+++||+|+|||+|++..+||+|+|||+ |+|+|+|+...+
T Consensus 128 ---------~~~~l~LrPt~e~~i~~~~~~~~~-s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e 197 (501)
T 1nj1_A 128 ---------LQRKLALRPTSETVMYPMFALWVR-SHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATAS 197 (501)
T ss_dssp ---------EEEEEEECSSSHHHHHHHHHHHCC-BTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHH
T ss_pred ---------cCCeeEEccCCCHHHHHHHHhhhc-ccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHH
Confidence 012459999999999999998754 346999999999999999976256999999999 999998554333
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCcccc
Q psy17941 306 KSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMA 385 (679)
Q Consensus 306 ~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~ 385 (679)
.+...+. .++.....++..+|+++. +. .....++.
T Consensus 198 ~a~~e~~------------------------------------------~~l~~~~~i~~~Lgl~~~-~~--~~~~~e~~ 232 (501)
T 1nj1_A 198 EAEEQVE------------------------------------------RAVEIYKEFFNSLGIPYL-IT--RRPPWDKF 232 (501)
T ss_dssp HHHHHHH------------------------------------------HHHHHHHHHHHHHTCCCE-EE--ECCTTTSC
T ss_pred HHHHHHH------------------------------------------HHHHHHHHHHHHCCCeEE-EE--eCCchhhc
Confidence 3222111 134445667788999843 21 22345778
Q ss_pred ccccCccchhhhccCC-ceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHH
Q psy17941 386 HYACDCWDAECLTSYG-WVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICD 464 (679)
Q Consensus 386 ~ya~~~~d~e~~~~~g-~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d 464 (679)
+++..+||+|.+++.| |.|+..+.+.+++.... .
T Consensus 233 ~~a~~~~die~~l~~g~~~ei~t~~~lg~~~a~~----~----------------------------------------- 267 (501)
T 1nj1_A 233 PGSEYTVAFDTLMPDGKTLQIGTVHNLGQTFART----F----------------------------------------- 267 (501)
T ss_dssp TTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHH----H-----------------------------------------
T ss_pred CCcccceEEEEEcCCCCEEEEEEEEeccccchhh----c-----------------------------------------
Confidence 8899999999998876 66776665444332110 0
Q ss_pred HhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccHHHHHHHHHHhccccCC
Q psy17941 465 ALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRD 544 (679)
Q Consensus 465 ~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIeRll~al~e~~~~~~~ 544 (679)
|.+ |... .|+...|+..++++| +|+|++|+|++.++.|
T Consensus 268 ----------------------------~~r------------y~~~-~g~~~~~h~~g~Gig-eRli~aliE~~~d~~G 305 (501)
T 1nj1_A 268 ----------------------------EIK------------FETP-EGDHEYVHQTCYGLS-DRVIASVIAIHGDESG 305 (501)
T ss_dssp ----------------------------TCE------------EECT-TSCEEECEEEEEEEC-THHHHHHHHHTCCSSS
T ss_pred ----------------------------CeE------------EECC-CCCEEeeeeccccHH-HHHHHHHHHHcCcccC
Confidence 001 1111 112222444334455 8999999998776666
Q ss_pred CccccccccCCCCCCCceEEEEec-CCC--CChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeC
Q psy17941 545 GDEQRTYLALPPLVAPLKASILPL-SSN--PEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDF 621 (679)
Q Consensus 545 ~~~~r~~l~~P~~laP~~V~Vi~l-~~~--~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~ 621 (679)
+.||++++|++|+|+|+ +.+ ++..++|.+|++.||++||+|++|+++.++|+||++|+++|+||+||||+
T Consensus 306 -------l~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~~~a~~~G~p~~iiiG~ 378 (501)
T 1nj1_A 306 -------LCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGP 378 (501)
T ss_dssp -------EECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHHHHHHEECSEEEEECH
T ss_pred -------ccCCccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECc
Confidence 79999999999999999 532 25889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 622 DTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 622 ~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
+|+ ++|+|+||+|+|++|..|+++++++.|.+++.
T Consensus 379 ~e~-~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~ 413 (501)
T 1nj1_A 379 RDL-EKGAAVISRRDTGEKVTADLQGIEETLRELMK 413 (501)
T ss_dssp HHH-TTTEEEEEESSSCCEEEEETTTHHHHHHHHHH
T ss_pred chh-hCCEEEEEECCCCceEEEeHHHHHHHHHHHHH
Confidence 999 89999999999999999999999998876654
No 13
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-51 Score=461.10 Aligned_cols=363 Identities=16% Similarity=0.179 Sum_probs=281.0
Q ss_pred HHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhh-cCCcccccCCc
Q psy17941 70 MEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKA-SGHVDRFADLM 148 (679)
Q Consensus 70 ~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~-SGh~~~f~d~m 148 (679)
..+++.+.+++.. +.++|+|+|+|.|++++++|+++|++.+ .+.||+||.||+|.+.++|.+ ||||+.|.++|
T Consensus 35 y~~l~~~~~lid~-----~~~~G~~~~lP~G~~i~~~L~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~em 108 (519)
T 4hvc_A 35 YSQVITKSEMIEY-----HDISGCYILRPWAYAIWEAIKDFFDAEI-KKLGVENCYFPMFVSQSALEKEKTHVADFAPEV 108 (519)
T ss_dssp HHHHHHHTTCEEE-----CSSTTCEEECHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGC
T ss_pred HHHHHHHCCCeEe-----cCCCCeEEECccHHHHHHHHHHHHHHHH-HHcCCEEEeccccccHHHHhcccCCcccccccc
Confidence 5679999999865 2479999999999999999999999999 899999999999999999996 99999999999
Q ss_pred eeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhh
Q psy17941 149 VKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMF 228 (679)
Q Consensus 149 ~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf 228 (679)
|+....+.. + +
T Consensus 109 y~~~d~g~~-----------------------------------------~---------l------------------- 119 (519)
T 4hvc_A 109 AWVTRSGKT-----------------------------------------E---------L------------------- 119 (519)
T ss_dssp EEEEEETTE-----------------------------------------E---------E-------------------
T ss_pred eEEeccCCc-----------------------------------------c---------c-------------------
Confidence 875432210 0 0
Q ss_pred hcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEE-EeCCCcch
Q psy17941 229 ATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEH-FCDPTDKS 307 (679)
Q Consensus 229 ~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~-F~~~~~~~ 307 (679)
+...+|||+++++++..|++.+. +.++||++++|+|+|||+|++|++||+|+|||+|.|+|+ ||+|++..
T Consensus 120 --------~e~l~LrPtse~~i~~~~~~~i~-SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~ 190 (519)
T 4hvc_A 120 --------AEPIAIRPTSETVMYPAYAKWVQ-SHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAA 190 (519)
T ss_dssp --------EEEEEECSSSHHHHHHHHHHHCS-SGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHH
T ss_pred --------ccceeeCCCCcHHHHHHHHhhcc-ccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHH
Confidence 01358999999999999987653 346899999999999999999999999999999999998 77766543
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHc-CCCccchhhhhccCccccc
Q psy17941 308 HAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISV-GIDPEKLRFRQHMGNEMAH 386 (679)
Q Consensus 308 ~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~-g~~~~~~~~r~~~~~e~~~ 386 (679)
..+.. ++.....++..+ |+++...+ ....++..
T Consensus 191 -~E~~~------------------------------------------~l~~~~~i~~~ll~lp~~~~~---~t~~e~~~ 224 (519)
T 4hvc_A 191 -EEVLQ------------------------------------------ILDLYAQVYEELLAIPVVKGR---KTEKEKFA 224 (519)
T ss_dssp -HHHHH------------------------------------------HHHHHHHHHHTTSCCCCEEEE---CCTTTSCT
T ss_pred -HHHHH------------------------------------------HHHHHHHHHHHhcCCcceeee---cCCccccC
Confidence 11111 344455666675 88875432 12235556
Q ss_pred cccCccchhhhcc-CC-ceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHH
Q psy17941 387 YACDCWDAECLTS-YG-WVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICD 464 (679)
Q Consensus 387 ya~~~~d~e~~~~-~g-~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d 464 (679)
++..+||+|.++| .| +.||..+.+-+++..
T Consensus 225 Ga~~t~~iEa~~p~~gr~~q~gT~~~Lg~~~s------------------------------------------------ 256 (519)
T 4hvc_A 225 GGDYTTTIEAFISASGRAIQGGTSHHLGQNFS------------------------------------------------ 256 (519)
T ss_dssp TSSEEEEEEEEETTTTEEEEEEEEEEEETHHH------------------------------------------------
T ss_pred CchhheeeeeeeccCCCEEeecccccccchhh------------------------------------------------
Confidence 7778899998875 34 234433222111100
Q ss_pred HhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecc-cceeEeccceeeccccHH-HHHHHHHHhcccc
Q psy17941 465 ALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKT-FHVEEIIPSVIEPSFGIG-RIMYALFEHNFKM 542 (679)
Q Consensus 465 ~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~-~~~~~~~P~vi~~s~GIe-Rll~al~e~~~~~ 542 (679)
+.|++. |... -++... .|+++|+|++ |++++|+|++.++
T Consensus 257 -----------------------------~~~~i~--------y~d~~~~g~~~--~vh~~~~Gi~~R~l~aliE~~~d~ 297 (519)
T 4hvc_A 257 -----------------------------KMFEIV--------FEDPKIPGEKQ--FAYQNSWGLTTRTIGVMTMVHGDN 297 (519)
T ss_dssp -----------------------------HHHTCE--------EECTTSTTCEE--ECEEEEEEEETHHHHHHHHHHCBT
T ss_pred -----------------------------hhcCcE--------EeccccCCCEE--EEEEccccHHHHHHHHHHHHhCcc
Confidence 001110 1111 012222 3567888875 9999999998777
Q ss_pred CCCccccccccCCCCCCCceEEEEecCC--------CCChHHHHHHHHHHHHHCCCeEEEeCCCC-CHHHHHHHHHHhCC
Q psy17941 543 RDGDEQRTYLALPPLVAPLKASILPLSS--------NPEFQPFIKMLSSELSQNGISFKVDDSGG-SIGKRYARTDEIAI 613 (679)
Q Consensus 543 ~~~~~~r~~l~~P~~laP~~V~Vi~l~~--------~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~-slgkq~k~Ad~~Gi 613 (679)
.| +.||+++||+||+|+|++. ++++.++|.+|++.|+++||+|++|+++. ++|+||++|+++|+
T Consensus 298 ~g-------l~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~~ael~Gi 370 (519)
T 4hvc_A 298 MG-------LVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGV 370 (519)
T ss_dssp TB-------CCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTC
T ss_pred cc-------ccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 66 8999999999999999973 13477899999999999999999999985 99999999999999
Q ss_pred CEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 614 PFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 614 p~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
||+|+||++|+ ++|+|+||+|+|++|..|+++++++.|.++++
T Consensus 371 P~~ivIG~kel-e~g~V~vr~R~tgeq~~v~~~el~~~l~~ll~ 413 (519)
T 4hvc_A 371 PIRLEVGPRDM-KSCQFVAVRRDTGEKLTVAENEAETKLQAILE 413 (519)
T ss_dssp SEEEEECHHHH-HHTEEEEEETTTCCEEEEEGGGHHHHHHHHHH
T ss_pred CEEEEECchhh-cCCeEEEEECCCCCccceeHHHHHHHHHHHHH
Confidence 99999999999 79999999999999999999999998876554
No 14
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3.8e-51 Score=457.57 Aligned_cols=355 Identities=20% Similarity=0.279 Sum_probs=272.9
Q ss_pred HHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhh-hcCCcccccCC
Q psy17941 69 KMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLK-ASGHVDRFADL 147 (679)
Q Consensus 69 ~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~-~SGh~~~f~d~ 147 (679)
-..+++.+.|++... +.++|+|+|+|.|++++++|+++|++.| .+.||+||.||+|.+.++|. .||||+.|.++
T Consensus 27 wy~~l~~~aglid~r----~~~~G~~~~lP~G~~i~~~L~~~~~~~~-~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~e 101 (518)
T 3ial_A 27 WFDAIMDAAELVDRR----YPVKGCVVFRPYGFFMENAIMRLCEEEY-AKVGISQILFPTVIPESFLKKESDHIKGFEAE 101 (518)
T ss_dssp HHHHHHHHTTCEETT----SSSTTCCEECHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHTSSHHHHHHHGGG
T ss_pred HHHHHHHHCCCcccC----CCCCCeEEECccHHHHHHHHHHHHHHHH-HHcCCEEEEcccccCHHHHHhhcCCccccccc
Confidence 456799999998531 1379999999999999999999999999 89999999999999999996 69999999999
Q ss_pred ceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhh
Q psy17941 148 MVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLM 227 (679)
Q Consensus 148 m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlm 227 (679)
||+....|.. +
T Consensus 102 my~v~d~g~~------------------------------------------------~--------------------- 112 (518)
T 3ial_A 102 CFWVEKGGLQ------------------------------------------------P--------------------- 112 (518)
T ss_dssp CEEEEEETTE------------------------------------------------E---------------------
T ss_pred EEEEecCCCc------------------------------------------------c---------------------
Confidence 9986443210 0
Q ss_pred hhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEe-CCCcc
Q psy17941 228 FATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFC-DPTDK 306 (679)
Q Consensus 228 f~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~-~~~~~ 306 (679)
.+...+|||+.+++++..|++.+. +.++||+++||+|+|||+|++|++||+|+|||+|+|+|+|+ +|++.
T Consensus 113 --------~~~~l~LrPt~e~~i~~~~~~~i~-SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a 183 (518)
T 3ial_A 113 --------LEERLALRPTSETAIYSMFSKWVR-SYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDA 183 (518)
T ss_dssp --------EEEEEEECSSSHHHHHHHHHHHCC-BGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHH
T ss_pred --------cCcceeECCCCcHHHHHHHHhhhc-ccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHH
Confidence 012458999999999988877653 23799999999999999999999999999999999999995 55433
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHH-HHcCCCccchhhhhccCcccc
Q psy17941 307 SHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFM-ISVGIDPEKLRFRQHMGNEMA 385 (679)
Q Consensus 307 ~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l-~~~g~~~~~~~~r~~~~~e~~ 385 (679)
...+..+ +.....++ ..+|+++.... ....++.
T Consensus 184 -~~e~~~~------------------------------------------l~~~~~i~~~~LGlp~~~~~---~~~~e~~ 217 (518)
T 3ial_A 184 -VSQLSDY------------------------------------------WKVIDTIFSDELCFKGQKLR---RVCWDRF 217 (518)
T ss_dssp -HHHHHHH------------------------------------------HHHHHHHHTTTTCCCCEEEE---ECGGGCC
T ss_pred -HHHHHHH------------------------------------------HHHHHHHHHHhcCCcEEeee---cChhhcc
Confidence 3323222 23334566 67888865332 1223443
Q ss_pred ccccCccchhhhccCC-ceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHH
Q psy17941 386 HYACDCWDAECLTSYG-WVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICD 464 (679)
Q Consensus 386 ~ya~~~~d~e~~~~~g-~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d 464 (679)
..+..++|+|+++|.| ++|+..+.+-+. .|.
T Consensus 218 ~gA~yt~~iE~~~pdgr~ie~gt~~~Lg~----------------------------------------~~s-------- 249 (518)
T 3ial_A 218 PGADYSEVSDVVMPCGRVLQTAGIHNLGQ----------------------------------------RFS-------- 249 (518)
T ss_dssp TTCSEEEEEEEECTTSCEEEEEEEEEEET----------------------------------------HHH--------
T ss_pred CCCccceEEEEEcCCCCEEEEeceecccc----------------------------------------hhh--------
Confidence 3333456788888875 445443321111 000
Q ss_pred HhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccH-HHHHHHHHHhccccC
Q psy17941 465 ALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGI-GRIMYALFEHNFKMR 543 (679)
Q Consensus 465 ~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GI-eRll~al~e~~~~~~ 543 (679)
++|++. |... +|....| +++|+|+ +|+|++|+|++.++.
T Consensus 250 -----------------------------~rf~i~--------y~d~-~g~~~~~--h~~~~G~~~R~iaaliE~~~de~ 289 (518)
T 3ial_A 250 -----------------------------STFDIL--------YANK-ANESVHP--YLTCAGISTRVLACALSIHGDSG 289 (518)
T ss_dssp -----------------------------HHTTCC--------EECT-TCCEECC--EEEEEEEETHHHHHHHHHHCBTT
T ss_pred -----------------------------hhcCcE--------EECC-CCCEeee--EEeccchHHHHHHHHHHHhCCCC
Confidence 011111 1111 1223334 3578887 699999999988777
Q ss_pred CCccccccccCCCCCCCceEEEEecCCC--------CChHHHHHHHHHHHHHC-CCeEEEeCC-CCCHHHHHHHHHHhCC
Q psy17941 544 DGDEQRTYLALPPLVAPLKASILPLSSN--------PEFQPFIKMLSSELSQN-GISFKVDDS-GGSIGKRYARTDEIAI 613 (679)
Q Consensus 544 ~~~~~r~~l~~P~~laP~~V~Vi~l~~~--------~e~~~~a~~l~~~Lr~~-Gi~v~~D~~-~~slgkq~k~Ad~~Gi 613 (679)
| +.||+++||+||+|+|++.+ +++.++|.+|++.|+++ ||+|.+|++ +.++|+||++|+++|+
T Consensus 290 G-------l~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~~ael~Gv 362 (518)
T 3ial_A 290 G-------LVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYELKGV 362 (518)
T ss_dssp B-------CCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHHHHHHTTC
T ss_pred c-------cccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 6 89999999999999999743 34778999999999999 999999999 8999999999999999
Q ss_pred CEEEEEeCCCCCCCCeEEEEECCCCc--eEEEehHHH
Q psy17941 614 PFGITIDFDTLKEPHSVTLRERDSMT--QVRVKVNEV 648 (679)
Q Consensus 614 p~~IiVG~~El~~~g~Vtlr~r~t~~--q~~v~i~el 648 (679)
||+|+||++++ ++|+|+||+|+|++ +..|+++++
T Consensus 363 P~~i~vG~ke~-e~g~V~vr~Rd~~~~~k~~v~~~el 398 (518)
T 3ial_A 363 PLRIEVGQRDL-ANGQCIVVPRDVGKDQKRVIPITEV 398 (518)
T ss_dssp SEEEEEEHHHH-HTTEEEEEETTTCGGGCEEEEHHHH
T ss_pred CEEEEECcchh-hCCEEEEEECCCCccceeEeeHHHH
Confidence 99999999999 89999999999999 999999999
No 15
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=2e-49 Score=441.78 Aligned_cols=366 Identities=21% Similarity=0.298 Sum_probs=277.8
Q ss_pred HHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhh-cCCcccccC
Q psy17941 68 AKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKA-SGHVDRFAD 146 (679)
Q Consensus 68 ~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~-SGh~~~f~d 146 (679)
.-..+++++.+++.++. +++|+|||+|.|++++++|+++|++.| .++||+||.||+|++.++|.+ ||||+.|.+
T Consensus 9 ~~~~~l~~~~~li~~~~----~~~G~~d~lP~g~~l~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~ 83 (459)
T 1nj8_A 9 EWYSDILEKAEIYDVRY----PIKGCGVYLPYGFKIRRYTFEIIRNLL-DESGHDEALFPMLIPEDLLAKEAEHIKGFED 83 (459)
T ss_dssp HHHHHHHHHTSSCBCCS----TTSSCCBBCHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHCSSSGGGGG
T ss_pred HhHHHHHHhCCCccccC----CCCceEEECChHHHHHHHHHHHHHHHH-HHcCCEEeeCCcccCHHHHhhhcCcccccch
Confidence 34678999999987632 379999999999999999999999999 999999999999999999985 999999999
Q ss_pred CceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhh
Q psy17941 147 LMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNL 226 (679)
Q Consensus 147 ~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnl 226 (679)
+||+....|..
T Consensus 84 emy~~~d~g~~--------------------------------------------------------------------- 94 (459)
T 1nj8_A 84 EVYWVTHGGKT--------------------------------------------------------------------- 94 (459)
T ss_dssp GCEEEEESSSS---------------------------------------------------------------------
T ss_pred hhEEEeccCcc---------------------------------------------------------------------
Confidence 99985433210
Q ss_pred hhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCccccccee-EeeEEEEeCCCc
Q psy17941 227 MFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFT-MAEIEHFCDPTD 305 (679)
Q Consensus 227 mf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~-q~e~~~F~~~~~ 305 (679)
..++..+||||+|+++++.|++.+.. .++||+++||||+|||+|.+.++||+|+|||+ |+|+|+|+.+.+
T Consensus 95 --------~~~~~l~LRP~~~~~i~~~~~~~~~s-~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~ 165 (459)
T 1nj8_A 95 --------QLDVKLALRPTSETPIYYMMKLWVKV-HTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKE 165 (459)
T ss_dssp --------EEEEEEEECSSSHHHHHHHHHTTCCB-TTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHH
T ss_pred --------cCCCeeEECCCCcHHHHHHHHHhhhh-cccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHH
Confidence 01235699999999999999977653 36899999999999999965266999999999 999999776544
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCcccc
Q psy17941 306 KSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMA 385 (679)
Q Consensus 306 ~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~ 385 (679)
.+...+.. ++.....++..+|++... ..+ ...+..
T Consensus 166 ~a~~e~~~------------------------------------------~i~~~~~~~~~LGl~~~~-~~~--~~~ek~ 200 (459)
T 1nj8_A 166 EAENQVKE------------------------------------------AISIYKKFFDTLGIPYLI-SKR--PEWDKF 200 (459)
T ss_dssp HHHHHHHH------------------------------------------HHHHHHHHHHHHTCCCEE-EEE--CTTSCC
T ss_pred HHHHHHHH------------------------------------------HHHHHHHHHHHCCCceEE-eec--Cchhhc
Confidence 43322222 233344566778887442 111 122445
Q ss_pred ccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHH
Q psy17941 386 HYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDA 465 (679)
Q Consensus 386 ~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~ 465 (679)
.++..+||+|.+++.|+..-+|.. ++ +|..+. .
T Consensus 201 ~ga~~~~~ie~~~~dg~~~e~gt~----~~-----------------------------------lg~~~s-------~- 233 (459)
T 1nj8_A 201 PGAEYTMAFDTIFPDGRTMQIATV----HN-----------------------------------LGQNFS-------K- 233 (459)
T ss_dssp TTCSEEEEEEEECTTSCEEEEEEE----EE-----------------------------------EETHHH-------H-
T ss_pred CCcccceeEEEEcCCCcEEEEEEE----ee-----------------------------------cccccc-------c-
Confidence 567778888887776642222211 00 111110 0
Q ss_pred hhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccH-HHHHHHHHHhccccCC
Q psy17941 466 LAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGI-GRIMYALFEHNFKMRD 544 (679)
Q Consensus 466 L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GI-eRll~al~e~~~~~~~ 544 (679)
.+ |.+| ... .|.. +.+.+.|||+ +|++++|++++.+..|
T Consensus 234 --------------~~-----------~~~Y------------~~~-~G~~--~~v~~~~~GigeRli~alie~~~d~~g 273 (459)
T 1nj8_A 234 --------------TF-----------EIIF------------ETP-TGDK--DYAYQTCYGISDRVIASIIAIHGDEKG 273 (459)
T ss_dssp --------------HT-----------TCEE------------ECT-TSSE--EECEEEEEEECTHHHHHHHHHHCBTTB
T ss_pred --------------cc-----------CeEE------------ECC-CCCE--eeeeEeeccHHHHHHHHHHHHhCCCce
Confidence 00 1111 111 1221 1234567777 7999999998776655
Q ss_pred CccccccccCCCCCCCceEEEEec-CCC--CChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeC
Q psy17941 545 GDEQRTYLALPPLVAPLKASILPL-SSN--PEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDF 621 (679)
Q Consensus 545 ~~~~r~~l~~P~~laP~~V~Vi~l-~~~--~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~ 621 (679)
+.||+++||++|+|+|+ +.+ +++.++|.+|++.||++ ++|++|+++.++|+||++|+++|+||+|+||+
T Consensus 274 -------l~~P~~laP~qv~Iipi~~~~~~~~~~~~a~~l~~~Lr~~-i~v~~D~~~~~~g~k~~~a~~~G~p~~iiiG~ 345 (459)
T 1nj8_A 274 -------LILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGP 345 (459)
T ss_dssp -------CCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHHTT-SCEEECCSCSCHHHHHHHHHHTTCSEEEEECH
T ss_pred -------eEcCCcCCCCcEEEEecccCCcHHHHHHHHHHHHHHHhhh-cEEEEECCCCCHHHHHHHHHHcCCCEEEEECc
Confidence 89999999999999999 632 25889999999999999 99999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 622 DTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 622 ~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
+|+ ++|+|+||+|+|++|..|+++++++.|.+++.
T Consensus 346 ~el-~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~ 380 (459)
T 1nj8_A 346 KDI-ENKKITLFRRDTMEKFQVDETQLMEVVEKTLN 380 (459)
T ss_dssp HHH-HTTEEEEEETTTCCEEEEETTSHHHHHHHHHH
T ss_pred chh-cCCEEEEEECCCCceEEEeHHHHHHHHHHHHH
Confidence 999 89999999999999999999999998876654
No 16
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=3e-49 Score=442.42 Aligned_cols=387 Identities=15% Similarity=0.173 Sum_probs=281.6
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLE 169 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~ 169 (679)
++|++||+|.|++++++|+++|+++| .++||+||.||+|++.++|++||||+.|+++||+...
T Consensus 38 ~~G~~d~lP~g~~~~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~---------------- 100 (471)
T 3a32_A 38 GAGVPLFSLGGGPIRYALAEVLAKFH-ARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDI---------------- 100 (471)
T ss_dssp CTTCCCBCTTHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEE----------------
T ss_pred CCEEEEECchHHHHHHHHHHHHHHHH-HHcCCEEEECCeeeehHHhhhccCccccccceEEEec----------------
Confidence 79999999999999999999999999 8999999999999999999999999999999987511
Q ss_pred HhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhh
Q psy17941 170 KLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQG 249 (679)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqg 249 (679)
+++..+|||++|++
T Consensus 101 ------------------------------------------------------------------~~~~l~LRP~~t~~ 114 (471)
T 3a32_A 101 ------------------------------------------------------------------EGHEFAVKPMNCPY 114 (471)
T ss_dssp ------------------------------------------------------------------TTEEEEECSCSHHH
T ss_pred ------------------------------------------------------------------CCcEEEEccccHHH
Confidence 12345999999999
Q ss_pred HHHHHHHhhhhc--cCCCCeeeecccccccCCCCCC-CCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHh
Q psy17941 250 IFVNFKRLLEFN--SGRLPFAAAQIGNAFRNEISPR-SGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSAC 326 (679)
Q Consensus 250 i~~~f~~~l~~~--~~~LP~~~~qig~~FR~E~~pr-~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~ 326 (679)
+++.|++.+... +.+||+++||+|+|||+|.+++ +||+|+|||+|+|+|+||.+++... .|
T Consensus 115 i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~d-e~--------------- 178 (471)
T 3a32_A 115 HILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVID-VV--------------- 178 (471)
T ss_dssp HHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHH-HH---------------
T ss_pred HHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHH-HH---------------
Confidence 999999876433 2489999999999999998776 9999999999999999998876531 11
Q ss_pred hccCCCCceEEeecccccccccccccHHHHHHHHHHHHHH-cCC----CccchhhhhccC----ccccccccCccchhhh
Q psy17941 327 NQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMIS-VGI----DPEKLRFRQHMG----NEMAHYACDCWDAECL 397 (679)
Q Consensus 327 ~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~-~g~----~~~~~~~r~~~~----~e~~~ya~~~~d~e~~ 397 (679)
..++.....++.. +|+ +.-.+.+..+.. +++.+|+.. ||...
T Consensus 179 ---------------------------~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~-~d~~~- 229 (471)
T 3a32_A 179 ---------------------------YDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEE-WEGAE- 229 (471)
T ss_dssp ---------------------------HHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHH-HHHHH-
T ss_pred ---------------------------HHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCHHH-HHHHH-
Confidence 1134445567788 999 544444444321 333433321 32111
Q ss_pred ccCCceeeeeccccchhhHhHHHH----HhCCcccccccCCCCccceeecccCcccccCccccchhhHHHH---HhhhcC
Q psy17941 398 TSYGWVECVGCADRSAYDLTQHFK----ATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICD---ALAALD 470 (679)
Q Consensus 398 ~~~g~~e~~~~~~r~~~dl~~~~~----~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d---~L~~~~ 470 (679)
-.+....+ ..+.+ .........++||++...+. | .+.
T Consensus 230 ----------------~~l~~~~~~~l~~~~~~--------------~~~~~~~~~~~gp~i~~~l~---d~~~~l~--- 273 (471)
T 3a32_A 230 ----------------EALREAASRINEKYGID--------------IVELEGEAAFYGPKLDFIMM---VEESGVS--- 273 (471)
T ss_dssp ----------------HHHHHHHHHHHHHHCCE--------------EEEETTCSBTTBCEEEEEEE---EESSSCE---
T ss_pred ----------------HHHHHHHHHHHHhcCCc--------------eEecccchhhCCCccceEEe---ccHHhhh---
Confidence 01111110 01211 11222345566775432110 1 111
Q ss_pred HhHHHHHHHhhhcCCcEEEeecCceeeeccceeE-Ee--eeecccceeEeccceee--ccccHHHHHHHHHHhccccCCC
Q psy17941 471 LNSVSAVEESLNTNGKYELLVDDKEFVLTKDMIS-IK--KSTKTFHVEEIIPSVIE--PSFGIGRIMYALFEHNFKMRDG 545 (679)
Q Consensus 471 ~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~-~~--~y~~~~~~~~~~P~vi~--~s~GIeRll~al~e~~~~~~~~ 545 (679)
+..++ | .+.++..+++ ++ ||+.+.+|.. .|.+++ .+.|++|+++++++++.
T Consensus 274 ----------------~~~~~-g-~~~lD~~l~r~~d~~Yyt~~~~G~~-e~~~i~~~i~GgieRli~~lie~~~----- 329 (471)
T 3a32_A 274 ----------------KEWQM-G-TIQFDFNLPRRFRLYDVVREEFGIE-EVYIIHRALLGSIERFLGVYLEHRR----- 329 (471)
T ss_dssp ----------------EEEEE-E-EEEEESSHHHHTTHHHHHHHHHCCS-CEEEEEEEEEEEHHHHHHHHHHHTT-----
T ss_pred ----------------hhhee-e-eEEecccccccCCceEeccccCCce-eeEEEeccccCcHHHHHHHHHHHhC-----
Confidence 11111 2 4556666665 45 8881111222 333333 23479999988888742
Q ss_pred ccccccccCCCCCCCceEEEEecCC----CCChHHHHHHHHHHHHHCCCeEEEeC-CCCCHHHHHHHHH-HhCCCEEEEE
Q psy17941 546 DEQRTYLALPPLVAPLKASILPLSS----NPEFQPFIKMLSSELSQNGISFKVDD-SGGSIGKRYARTD-EIAIPFGITI 619 (679)
Q Consensus 546 ~~~r~~l~~P~~laP~~V~Vi~l~~----~~e~~~~a~~l~~~Lr~~Gi~v~~D~-~~~slgkq~k~Ad-~~Gip~~IiV 619 (679)
+.||+++||++|+|+|++. +++..++|.+|++.||++|++|++|+ ++.++|+||++|+ ++|+||+|||
T Consensus 330 ------g~~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~~g~k~~~a~~~~gip~~iii 403 (471)
T 3a32_A 330 ------GRMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAVNVFI 403 (471)
T ss_dssp ------TCCCGGGCSCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEETTTHHHHHHHHHHTTCCSEEEEE
T ss_pred ------CCCCCCcCCceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHHhcCCCEEEEE
Confidence 3699999999999999972 14578899999999999999999999 8899999999999 9999999999
Q ss_pred eCCCCCCCCeEEEEECCCCc--eEEEehH-----HHHHHHHHHHh----cccchHHHHccCCC
Q psy17941 620 DFDTLKEPHSVTLRERDSMT--QVRVKVN-----EVASVIKDLSL----AKITWEDVQSKYPK 671 (679)
Q Consensus 620 G~~El~~~g~Vtlr~r~t~~--q~~v~i~-----el~~~l~~l~~----~~~~~~~~~~~~~~ 671 (679)
|++|+ ++|+|+||+|+|++ +..|+++ ++++.|.+++. .-.+|+++..+||.
T Consensus 404 G~~e~-~~~~V~vr~r~~~~q~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3a32_A 404 GAKEV-REKVLDVRVFDLESMKRRRLAIAYGDAADAVENLAAVAEELESPVRSLSGQAPRIPA 465 (471)
T ss_dssp CHHHH-HHTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCE
T ss_pred Cchhh-hCCEEEEEECCCCccceEEEeecccchhHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 99999 79999999999998 6889988 88887777664 33578888888885
No 17
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=6.1e-46 Score=409.95 Aligned_cols=392 Identities=17% Similarity=0.176 Sum_probs=236.3
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc--CCcccccCCceeeCCCCcccchhhhHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS--GHVDRFADLMVKDLKTGECFRLDHLIKA 166 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S--Gh~~~f~d~m~~d~~~~~~~r~d~l~~~ 166 (679)
.++|++||+|.|++++++|+++|+++| .++||+||.||+|++.++|.+| |||+.|+++||+....
T Consensus 4 ~~~G~~~~~p~~~~~~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~------------ 70 (420)
T 1qe0_A 4 IPRGTQDILPEDSKKWRYIENQLDELM-TFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK------------ 70 (420)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHH-HHHTCEECBCCSEEEHHHHCC-----------CCEEECHH------------
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHH-HHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcC------------
Confidence 379999999999999999999999999 9999999999999999999999 9999999999874221
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccc
Q psy17941 167 HLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPET 246 (679)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~ 246 (679)
+++..+|||++
T Consensus 71 ---------------------------------------------------------------------~g~~~~Lrp~~ 81 (420)
T 1qe0_A 71 ---------------------------------------------------------------------GDRSITLRPEG 81 (420)
T ss_dssp ---------------------------------------------------------------------HHCCEEECSCS
T ss_pred ---------------------------------------------------------------------CCCEEEeCCCC
Confidence 11235999999
Q ss_pred hhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHh
Q psy17941 247 AQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSAC 326 (679)
Q Consensus 247 aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~ 326 (679)
|+++++.|+......++++|+++||+|+|||+| +|+.| |+|||+|+|+|+|+.+++.++ + .+..... .+|.++
T Consensus 82 t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E-~~~~g--R~reF~q~~~e~~~~~~~~~d--~-e~i~~~~-~~l~~l 154 (420)
T 1qe0_A 82 TAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYE-RKQKG--RYRQFNQFGVEAIGAENPSVD--A-EVLAMVM-HIYQSF 154 (420)
T ss_dssp HHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC----------CCEEEEEEEEEESCCCHHHH--H-HHHHHHH-HHHHHT
T ss_pred hHHHHHHHHhccccccCCCCeEEEEecCEeecC-CCcCC--CcccEEEeeEEEECCCCchhH--H-HHHHHHH-HHHHHc
Confidence 999999998553221278999999999999999 88876 999999999999999876542 1 1112222 444443
Q ss_pred hccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccCCceeee
Q psy17941 327 NQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECV 406 (679)
Q Consensus 327 ~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~ 406 (679)
| -....+.+++.+... ....|.+....++... ....+.+||+.-.. ..| ++.
T Consensus 155 g----l~~~~i~l~~~g~~~-----~~~~~~~~l~~~~~~~----------------~~~l~~~~~~~l~~--~~~-~~l 206 (420)
T 1qe0_A 155 G----LKHLKLVINSVGDMA-----SRKEYNEALVKHFEPV----------------IHEFCSDCQSRLHT--DPM-RIL 206 (420)
T ss_dssp T----CCCEEEEEEECCCHH-----HHHHHHHHHHHHHGGG----------------GGGSCHHHHHTTTT--CGG-GGC
T ss_pred C----CCceEEEEcccCchh-----hHHHHHHHHHHHHHHH----------------HhhhCHHHHHHHHh--cch-hhh
Confidence 2 111233333322100 0011222222222110 00111112211000 000 000
Q ss_pred eccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhcCHhHHHHHHHhhhcCC-
Q psy17941 407 GCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNG- 485 (679)
Q Consensus 407 ~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~~~~~~~~~~l~~~g- 485 (679)
.+.++++. .+..+++.+.++++....+++..+...++..|
T Consensus 207 ~~~~~~~~---------------------------------------~~~~~a~~l~~~l~~~~~~~l~~l~~~l~~~gi 247 (420)
T 1qe0_A 207 DCKVDRDK---------------------------------------EAIKTAPRITDFLNEESKAYYEQVKAYLDDLGI 247 (420)
T ss_dssp ---------------------------------------------------CCCCGGGCCCTTHHHHHHHHHHHHHHHTC
T ss_pred cccchhHH---------------------------------------HHHhhchHHHHHhhHHHHHHHHHHHHHHHHcCC
Confidence 00000000 00000111111111111122333333333222
Q ss_pred cEEEeec---------Cceeeecc----------ceeEEeeeeccc--ceeEeccceeeccccHHHHHHHHHHhccccCC
Q psy17941 486 KYELLVD---------DKEFVLTK----------DMISIKKSTKTF--HVEEIIPSVIEPSFGIGRIMYALFEHNFKMRD 544 (679)
Q Consensus 486 ~~~~~~~---------g~~f~i~~----------~~v~~~~y~~~~--~~~~~~P~vi~~s~GIeRll~al~e~~~~~~~ 544 (679)
.+.++.. |.-|++-. .+..+.+|..-+ +++..+|.| ++++|++|+++++ ++. +
T Consensus 248 ~~~~d~~l~rg~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l~~~~g~~~~P~v-g~~igveRl~~~l-e~~----~ 321 (420)
T 1qe0_A 248 PYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGI-GFALSIERLLLAL-EEE----G 321 (420)
T ss_dssp CCEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESHHHHTTCCCCEEE-EEEEEHHHHHHHH-HHT----T
T ss_pred eEEECcccccchhhhcCeEEEEEEcCCCCCCCcCccccCccHHHHHHHhCCCCCCEE-EEEecHHHHHHHH-Hhc----C
Confidence 1222111 11222210 011122232211 112236775 8999999999887 542 2
Q ss_pred CccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCC
Q psy17941 545 GDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTL 624 (679)
Q Consensus 545 ~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El 624 (679)
+.||. ++|++|+|+|++. +...+|.++++.||++|++|++|+++.++++|+++|+++|+||+||||++|+
T Consensus 322 -------~~~p~-~~p~~v~i~~~~~--~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g~p~~iiig~~e~ 391 (420)
T 1qe0_A 322 -------IELDI-EENLDLFIVTMGD--QADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQEL 391 (420)
T ss_dssp -------CCCCC-CCCCSEEEEECHH--HHHHHHHHHHHHHHTTTCCEEECCSCCCHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred -------CCCCC-CCCCeEEEEEeCH--HHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEECcchh
Confidence 57888 8999999999864 3778999999999999999999998899999999999999999999999999
Q ss_pred CCCCeEEEEECCCCceEEEehHHHHHHHH
Q psy17941 625 KEPHSVTLRERDSMTQVRVKVNEVASVIK 653 (679)
Q Consensus 625 ~~~g~Vtlr~r~t~~q~~v~i~el~~~l~ 653 (679)
++|+|+||+|++++|..|+++++++.|+
T Consensus 392 -~~~~v~vk~~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 392 -ENNKIDVKNMTTGESETIELDALVEYFK 419 (420)
T ss_dssp -HHTCEEEEETTTCCEEEECTTHHHHHHH
T ss_pred -hcCeEEEEECCCCCeEEEcHHHHHHHHh
Confidence 7999999999999999999999998774
No 18
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=4.2e-45 Score=413.59 Aligned_cols=455 Identities=18% Similarity=0.169 Sum_probs=247.2
Q ss_pred HHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhcCCCCCCCChHHHHHHHHHhccccchhh
Q psy17941 6 VEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKMEDLLKRRFFYDQSFS 85 (679)
Q Consensus 6 ~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~l~~r~~f~~~~~e 85 (679)
.+.+...|++.++.++..++.||..+++...+.++++++.++++++.... . +..|+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-------~------------~~~~~l~~-- 69 (517)
T 4g85_A 11 QMAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDE-------S------------KQKFVLKT-- 69 (517)
T ss_dssp ----------------------------------------------------------------------CCCCCCCC--
T ss_pred ccccHHHHHHHHHHhhhhhcccccccCCHHHHHHHHHHHHHhhhhcCCcc-------c------------ccceeeeC--
Confidence 45567788899999999999999999999999999988777666543211 1 13344332
Q ss_pred hcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHH
Q psy17941 86 IYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIK 165 (679)
Q Consensus 86 i~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~ 165 (679)
++|+.||+|.++++|+.|++.|++.| .++||+||.||+|++.++|.++. +..+|.||+...
T Consensus 70 ----P~G~~D~lP~~~~~~~~ie~~i~~~~-~~~Gy~eI~tP~lE~~el~~~~~--ge~~~~my~f~D------------ 130 (517)
T 4g85_A 70 ----PKGTRDYSPRQMAVREKVFDVIIRCF-KRHGAEVIDTPVFELKETLMGKY--GEDSKLIYDLKD------------ 130 (517)
T ss_dssp ----CTTCCCBCHHHHHHHHHHHHHHHHHH-HHHTCEECBCCSEEEHHHHHCC--------CSCBBCC------------
T ss_pred ----CCCCCccCHHHHHHHHHHHHHHHHHH-HHCCCeEEECcccCcHHHhhccc--CcCcceeEEEEC------------
Confidence 79999999999999999999999999 99999999999999999997642 233566765221
Q ss_pred HHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCcc
Q psy17941 166 AHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPE 245 (679)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE 245 (679)
.+++...||||
T Consensus 131 ---------------------------------------------------------------------~~g~~l~LRPd 141 (517)
T 4g85_A 131 ---------------------------------------------------------------------QGGELLSLRYD 141 (517)
T ss_dssp ---------------------------------------------------------------------TTSCCEEECSC
T ss_pred ---------------------------------------------------------------------CCCCEEEeCCc
Confidence 03345689999
Q ss_pred chhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHH----HH
Q psy17941 246 TAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQM----MV 321 (679)
Q Consensus 246 ~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~----~~ 321 (679)
.|.++.|.+.+. +.+|+++||+|++||+| +|+.+..|+|||+|+++|+|+.++... .|+++ ..
T Consensus 142 ~T~~~aR~~~~~-----~~~p~k~yyig~vfR~E-rp~~~~GR~ReF~Q~g~ei~G~~~~~~-------aDaEvi~l~~~ 208 (517)
T 4g85_A 142 LTVPFARYLAMN-----KLTNIKRYHIAKVYRRD-NPAMTRGRYREFYQCDFDIAGNFDPMI-------PDAECLKIMCE 208 (517)
T ss_dssp SHHHHHHHHHHT-----TCSCEEEEEEEEEECCC-C-------CCEEEEEEEEEESCCCTTH-------HHHHHHHHHHH
T ss_pred CcHHHHHHHHhC-----CCCCceeEEEeceEecc-CcccccCccceeeeeceeccCCccchH-------HHHHHHHHHHH
Confidence 999999888753 67899999999999999 896544499999999999999876532 23333 14
Q ss_pred HHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccCC
Q psy17941 322 LYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYG 401 (679)
Q Consensus 322 lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g 401 (679)
+|.+++ -....+.+++. + ....++..+|++.+..+.-... ++-+...+
T Consensus 209 ~l~~lg----l~~~~i~in~~-----------~----~l~~~~~~~~~~~~~~~~~~~~-------------ld~ldk~~ 256 (517)
T 4g85_A 209 ILSSLQ----IGDFLVKVNDR-----------R----ILDGMFAICGVSDSKFRTICSS-------------VDKLDKVS 256 (517)
T ss_dssp HHHHHC----CCCEEEEEEEH-----------H----HHHHHHHHHTCCHHHHHHHHHH-------------HHTTTTSC
T ss_pred HHHhhc----CCcccccccch-----------h----hHHHHHHhhcchHHHHHHHHHH-------------Hhhhcchh
Confidence 454432 11122223221 1 1223344566655433210000 00000011
Q ss_pred ceeeeeccccchhhHhHHHHHhCCccccccc------CC-CCccceeecccCcccccCccccchhhHHHHHhhhcCHhHH
Q psy17941 402 WVECVGCADRSAYDLTQHFKATGVRLSAEKH------LP-EPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSV 474 (679)
Q Consensus 402 ~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~------~~-~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~~~~ 474 (679)
|.++.. .+. ...+..-...++ .. .+..++ ...-.+.+.. .....+.+ +++
T Consensus 257 ~~~~~~-------~l~---~~~~~~~~~~~~l~~~~~~~g~~~~~~-------~~~~~~~~~~-~~~~~~~l-----~~l 313 (517)
T 4g85_A 257 WEEVKN-------EMV---GEKGLAPEVADRIGDYVQQHGGVSLVE-------QLLQDPKLSQ-NKQALEGL-----GDL 313 (517)
T ss_dssp HHHHHH-------HHH---HHTCCCHHHHHHHHHHHHCCBSHHHHH-------HHHHCHHHHT-CHHHHHHH-----HHH
T ss_pred HHHHHH-------HHH---hhcCCCHHHHHHHHHHHHhcCCchHHH-------HHHhcccccc-cHHHHHHH-----HHH
Confidence 100000 000 000000000000 00 000000 0000000000 00111111 112
Q ss_pred HHHHHhhhcCCcEEEeecCceeeeccceeE-Eeeeecccc-----------------------eeEe-------------
Q psy17941 475 SAVEESLNTNGKYELLVDDKEFVLTKDMIS-IKKSTKTFH-----------------------VEEI------------- 517 (679)
Q Consensus 475 ~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~-----------------------~~~~------------- 517 (679)
..+.+.++..|. +..+.+++.+++ ++|||.+++ |++|
T Consensus 314 ~~l~~~l~~~g~------~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~GGRYD~Lv~~f~~~G~~ 387 (517)
T 4g85_A 314 KLLFEYLTLFGI------DDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRK 387 (517)
T ss_dssp HHHHHHHHHHTC------GGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEEEECHHHHHTTSSSCCC
T ss_pred HHHHHHHHhhCC------CcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecCCCchhHHHHHhccCCCC
Confidence 233333322211 123555566666 566665442 3344
Q ss_pred ccceeeccccHHHHHHHHHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeC-
Q psy17941 518 IPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDD- 596 (679)
Q Consensus 518 ~P~vi~~s~GIeRll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~- 596 (679)
+|+| |+|+||+||+.+|.++.. + +.+|.+.+|++|+|++++++ ...++.+|++.||++||+|++|+
T Consensus 388 ~pav-Gfa~gierl~~~le~~~~---~-------~~~~~~~~~~~V~v~~~~~~--~~~~a~~l~~~Lr~~Gi~ve~~~~ 454 (517)
T 4g85_A 388 VPCV-GLSIGVERIFSIVEQRLE---A-------LEEKIRTTETQVLVASAQKK--LLEERLKLVSELWDAGIKAELLYK 454 (517)
T ss_dssp CCEE-EEEECHHHHHHHHHHHHH---H-------TTCCCCSCCCCEEEEESSSS--CHHHHHHHHHHHHHTTCCEEECSS
T ss_pred CCcc-cccchHHHHHHHHHHhcc---c-------cCccccCCCCEEEEEeCCHH--HHHHHHHHHHHHHHCCCcEEEEeC
Confidence 5666 799999999987755421 0 34555667899999998754 78899999999999999999985
Q ss_pred CCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 597 SGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 597 ~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
++.++++||++|++.|+||+||||++|+ ++|+|+||+|.||+|..|+++++++.|++.+.
T Consensus 455 ~~~~l~~q~k~A~~~g~~~~viiG~~E~-~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 514 (517)
T 4g85_A 455 KNPKLLNQLQYCEEAGIPLVAIIGEQEL-KDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 514 (517)
T ss_dssp SSCCHHHHHHHHHHHCCCEEEEECHHHH-HTTEEEEEETTTCCEEEEEHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHCCCCEEEEECChhH-hCCEEEEEECCCCCeEEeeHHHHHHHHHHHhc
Confidence 4679999999999999999999999999 79999999999999999999999999988765
No 19
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=1.3e-44 Score=404.14 Aligned_cols=376 Identities=16% Similarity=0.226 Sum_probs=262.9
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc-CC-cccccCCceeeCCCCcccchhhhHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS-GH-VDRFADLMVKDLKTGECFRLDHLIKA 166 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S-Gh-~~~f~d~m~~d~~~~~~~r~d~l~~~ 166 (679)
.++|++||+|.|+++++.|+++|++.| .++||.||.||+|++.++|.+| || |+.|.++||+....+
T Consensus 34 ~~~G~~d~lP~~~~~~~~l~~~i~~~~-~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~----------- 101 (467)
T 4e51_A 34 GVKGMNDILPQDAGLWEFFEATVKSLL-RAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDAL----------- 101 (467)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTT-----------
T ss_pred CCCCceeeCHHHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCC-----------
Confidence 479999999999999999999999999 9999999999999999999998 99 888888888732210
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccc
Q psy17941 167 HLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPET 246 (679)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~ 246 (679)
+++...|||+.
T Consensus 102 ---------------------------------------------------------------------~g~~l~LRPd~ 112 (467)
T 4e51_A 102 ---------------------------------------------------------------------NGENLTLRPEN 112 (467)
T ss_dssp ---------------------------------------------------------------------TCCEEEECSCS
T ss_pred ---------------------------------------------------------------------CCCEEEeCccc
Confidence 02345899999
Q ss_pred hhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHh
Q psy17941 247 AQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSAC 326 (679)
Q Consensus 247 aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~ 326 (679)
|.++.+.|+...... ++|+++||+|+|||+| +|+.| |+|||+|+|+|+||.+++.+ |+++
T Consensus 113 t~~~ar~~~~~~~~~--~lP~r~~~~g~vfR~E-~~~~g--R~ReF~Q~d~ei~g~~~~~a--------daEv------- 172 (467)
T 4e51_A 113 TAAVVRAAIEHNMLY--DGPKRLWYIGPMFRHE-RPQRG--RYRQFHQVGVEALGFAGPDA--------DAEI------- 172 (467)
T ss_dssp HHHHHHHHHHTTTTT--TSCEEEEEEEEEECCC-CC-----CCSEEEEEEEEEETCCCSHH--------HHHH-------
T ss_pred HHHHHHHHHHccccc--CCCEEEEEEccEEccC-CCCCC--CcCceEEEEEEEEeCCChHH--------HHHH-------
Confidence 999999998653222 5899999999999999 78887 99999999999999987753 3333
Q ss_pred hccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccc------hhhhccC
Q psy17941 327 NQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWD------AECLTSY 400 (679)
Q Consensus 327 ~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d------~e~~~~~ 400 (679)
+..+..++..+|++.-.+.+.. .. ..+|.. .+.+...
T Consensus 173 ------------------------------i~l~~~~l~~lGl~~~~i~in~-~g------~~~~~~~~~~~l~~~l~~~ 215 (467)
T 4e51_A 173 ------------------------------VMMCQRLWEDLGLTGIKLEINS-LG------LAEERAAHRVELIKYLEQH 215 (467)
T ss_dssp ------------------------------HHHHHHHHHHHTCCCEEEEEEE-CC------CHHHHHHHHHHHHHHHHTT
T ss_pred ------------------------------HHHHHHHHHHcCCCceEEEEeC-CC------chhhhHHHHHHHHHHHHHH
Confidence 1223344455555432222110 00 000000 0000000
Q ss_pred CceeeeeccccchhhHhHH--HHHhCCcccccccCCCCccceeecccCcccccC-ccccchhhHHHHHhhhcCHhHHHHH
Q psy17941 401 GWVECVGCADRSAYDLTQH--FKATGVRLSAEKHLPEPQTREIVEPVLNKGIIG-KEFKKDAKTICDALAALDLNSVSAV 477 (679)
Q Consensus 401 g~~e~~~~~~r~~~dl~~~--~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G-~~~~~~~~~i~d~L~~~~~~~~~~~ 477 (679)
.. .|+.. .+... +|.++ ++++.-+ ..+..+++.+.++|+..+.++++.+
T Consensus 216 ----------~~--~l~~~~~~~l~~----------~~l~~------ld~k~~~~~~~l~~a~~l~~~l~~~~~~~l~~l 267 (467)
T 4e51_A 216 ----------AD--KLDDDAQRRLYT----------NPLRV------LDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGL 267 (467)
T ss_dssp ----------GG--GCCHHHHHHHTT----------CTHHH------HTCCCGGGHHHHHTSCCGGGGCCHHHHHHHHHH
T ss_pred ----------Hh--ccCHHHHHHHHh----------chHHH------hhccchhHHHHHhhhHHHHHhhhHHHHHHHHHH
Confidence 00 00000 00111 12111 1111100 1122234444454432223445566
Q ss_pred HHhhhcCCcEEEeecCceeeeccceeE-Eeeeecccc---------------eeEe-----------ccceeeccccHHH
Q psy17941 478 EESLNTNGKYELLVDDKEFVLTKDMIS-IKKSTKTFH---------------VEEI-----------IPSVIEPSFGIGR 530 (679)
Q Consensus 478 ~~~l~~~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~---------------~~~~-----------~P~vi~~s~GIeR 530 (679)
...|+.. |.+|.+++.+++ ++||+.+++ |++| +|+| ++++|+||
T Consensus 268 ~~~L~~~--------gi~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~~~g~~~~Pav-Gfa~gleR 338 (467)
T 4e51_A 268 QRLLKAN--------NVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAAC-GWAMGIER 338 (467)
T ss_dssp HHHHHHT--------TCCEEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHHHTTSSCCCEE-EEEEEHHH
T ss_pred HHHHHHc--------CCeEEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHHHhCCCCCCce-eehHHHHH
Confidence 6666544 446888888888 788887775 3455 5766 89999999
Q ss_pred HHHHHHHhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCC----CCCHHHHHH
Q psy17941 531 IMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDS----GGSIGKRYA 606 (679)
Q Consensus 531 ll~al~e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~----~~slgkq~k 606 (679)
|+.+|.+++ .+|. .+|.+|+|+|++++ ...+|.++++.||++|++|++|.+ +.++++||+
T Consensus 339 l~~~l~~~~-------------~~~~-~~p~~V~Vip~~~~--~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~ 402 (467)
T 4e51_A 339 ILELLKEEH-------------LVPE-QEGVDVYVVHQGDA--AREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMK 402 (467)
T ss_dssp HHHHHHHTT-------------CCCC-CCCCSEEEEECSHH--HHHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHH
T ss_pred HHHHHHhcC-------------Cccc-CCCCeEEEEEcChH--HHHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHH
Confidence 999887752 2444 68999999998753 778999999999999999999988 799999999
Q ss_pred HHHHhCCCEEEEEeCCCCCCCCeEEEEECCC-C------ceEEEehHHHHHHHHHHH
Q psy17941 607 RTDEIAIPFGITIDFDTLKEPHSVTLRERDS-M------TQVRVKVNEVASVIKDLS 656 (679)
Q Consensus 607 ~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t-~------~q~~v~i~el~~~l~~l~ 656 (679)
+|++.|+||+||||++|+ ++|+|+||+|+| + +|..|+++++++.|++.+
T Consensus 403 ~A~~~g~~~~iiiG~~E~-~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 403 RADASGAAFAVIFGEDEV-TNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp HHHHTTCSEEEEECHHHH-HHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred HHHHcCCCEEEEECcchh-hCCeEEEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 999999999999999999 799999999999 8 999999999999998776
No 20
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=1.2e-43 Score=392.10 Aligned_cols=383 Identities=17% Similarity=0.202 Sum_probs=248.3
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc-CC-cccccCCceeeCCCCcccchhhhHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS-GH-VDRFADLMVKDLKTGECFRLDHLIKA 166 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S-Gh-~~~f~d~m~~d~~~~~~~r~d~l~~~ 166 (679)
.++|++||+|.|++++++|++.+++.| .++||+||.||+|++.++|++| || |+.+.++||+....
T Consensus 6 ~~~G~~d~lP~~~~~~~~i~~~i~~~~-~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~------------ 72 (423)
T 1htt_A 6 AIRGMNDYLPGETAIWQRIEGTLKNVL-GSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR------------ 72 (423)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHH-HTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECT------------
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHH-HHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcC------------
Confidence 479999999999999999999999999 9999999999999999999988 98 88888888874321
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccc
Q psy17941 167 HLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPET 246 (679)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~ 246 (679)
+++...||||.
T Consensus 73 ---------------------------------------------------------------------~g~~l~Lrpd~ 83 (423)
T 1htt_A 73 ---------------------------------------------------------------------NGDSLTLRPEG 83 (423)
T ss_dssp ---------------------------------------------------------------------TSCEEEECSCS
T ss_pred ---------------------------------------------------------------------CCCEEEeCCCc
Confidence 12345899999
Q ss_pred hhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHh
Q psy17941 247 AQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSAC 326 (679)
Q Consensus 247 aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~ 326 (679)
|.++.+.+.+.. ..+++|+++||+|++||+| +|+.| |+|||+|+|+|+|+.+++.+.. .+..++. .+|.++
T Consensus 84 t~~~aR~~~~~~--~~~~~P~rl~~~g~vfR~e-~p~~g--R~Ref~Q~d~e~~g~~~~~ad~---e~i~~~~-~~l~~l 154 (423)
T 1htt_A 84 TAGCVRAGIEHG--LLYNQEQRLWYIGPMFRHE-RPQKG--RYRQFHQLGCEVFGLQGPDIDA---ELIMLTA-RWWRAL 154 (423)
T ss_dssp HHHHHHHHHHHT--CSTTCCEEEEEEEEEECCC-CCCSS--CCSEEEEEEEEEESCCSHHHHH---HHHHHHH-HHHHHH
T ss_pred hHHHHHHHHhcc--cccCCCeEEEEEcCEecCC-CCCCC--ccceeEEeeEEEECCCCchhhH---HHHHHHH-HHHHHC
Confidence 999999998652 2367999999999999999 99988 9999999999999987764311 1222222 333332
Q ss_pred hccCCC-CceEEeecccccccccccccHH-HHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccCCcee
Q psy17941 327 NQMDGK-PAERITIGEAVRSNLVANETLG-YFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVE 404 (679)
Q Consensus 327 ~~~~g~-~~~~~~~~~a~~~~~i~~~~l~-~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e 404 (679)
+ - ....+.+++.+ |..+. -|.+.+..++.. . .+
T Consensus 155 g----l~~~~~i~i~~~g------~~~~~~~~~~~l~~~l~~------------~--------------~~--------- 189 (423)
T 1htt_A 155 G----ISEHVTLELNSIG------SLEARANYRDALVAFLEQ------------H--------------KE--------- 189 (423)
T ss_dssp T----CGGGCEEEEEECC------CHHHHHHC------------------------------------------------
T ss_pred C----CCCCcEEEEcCCC------ChhhHHHHHHHHHHHHHH------------H--------------Hh---------
Confidence 1 1 01112222211 11000 000000000000 0 00
Q ss_pred eeeccccchhhHhHHHHHhCCcccccccCC-CCccceeecccCcccccCccccchhhHHHHHhhhcCHhHHHHHHHhhhc
Q psy17941 405 CVGCADRSAYDLTQHFKATGVRLSAEKHLP-EPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNT 483 (679)
Q Consensus 405 ~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~-~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~~~~~~~~~~l~~ 483 (679)
.+.... ..++. .|..+-........ .+-.+++.+.+++.....+++..+...+..
T Consensus 190 ----------~~~~~~---------~~~l~~~~l~~l~~~~~~~~-----~~l~~~~~l~~~l~~~~~~~l~~~~~~l~~ 245 (423)
T 1htt_A 190 ----------KLDEDC---------KRRMYTNPLRVLDSKNPEVQ-----ALLNDAPALGDYLDEESREHFAGLCKLLES 245 (423)
T ss_dssp --------------------------------------------------------------CCHHHHHHHHHHHHHHHT
T ss_pred ----------ccCHHH---------HHHHHhchhHhhhcccHHHH-----HHHhcchHHHhhhhHHHHHHHHHHHHHHHH
Confidence 000000 00000 01000000000001 111122333333321111223344444443
Q ss_pred CCcEEEeecCceeeeccceeE-Eeeeeccc---------------ceeEe-----------ccceeeccccHHHHHHHHH
Q psy17941 484 NGKYELLVDDKEFVLTKDMIS-IKKSTKTF---------------HVEEI-----------IPSVIEPSFGIGRIMYALF 536 (679)
Q Consensus 484 ~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~---------------~~~~~-----------~P~vi~~s~GIeRll~al~ 536 (679)
.| ..+.+++.+++ ++||+..+ .|++| .|.| ++|+|++|++.++.
T Consensus 246 ~g--------~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg~~~pav-Gf~igveRl~~~l~ 316 (423)
T 1htt_A 246 AG--------IAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV-GFAMGLERLVLLVQ 316 (423)
T ss_dssp TT--------CCCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECTTHHHHTTSCCCCEE-EEEEEHHHHHHHHH
T ss_pred cC--------CeEEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCCCCCCeE-EEEecHHHHHHHHH
Confidence 33 23444444444 34444321 13333 5776 79999999999998
Q ss_pred HhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHC--CCeEEEeCCCCCHHHHHHHHHHhCCC
Q psy17941 537 EHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQN--GISFKVDDSGGSIGKRYARTDEIAIP 614 (679)
Q Consensus 537 e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~--Gi~v~~D~~~~slgkq~k~Ad~~Gip 614 (679)
+++ ..| ++.+|++|+|+|+++ +....|.++++.||++ |++|++|+++.++++|+++|+++|+|
T Consensus 317 e~~------------~~~-~~~~p~~v~i~~~~~--~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~~~~~~~~~~a~~~g~p 381 (423)
T 1htt_A 317 AVN------------PEF-KADPVVDIYLVASGA--DTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGAR 381 (423)
T ss_dssp HHS------------TTC-CCCCSCSEEEEECST--THHHHHHHHHHHHHHHSTTCCEEECCSCCCHHHHHHHHHHHTCS
T ss_pred hcC------------cCC-CCCCCCcEEEEEcCH--HHHHHHHHHHHHHHcCCCCcEEEEeCCCCCHHHHHHHHHHcCCC
Confidence 863 234 445999999999875 3788999999999999 99999999889999999999999999
Q ss_pred EEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHH
Q psy17941 615 FGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLS 656 (679)
Q Consensus 615 ~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~ 656 (679)
|+||||++|+ ++|+|+||+|.|++|..++++++++.|++++
T Consensus 382 ~~iiiG~~e~-~~~~v~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 382 VAVVLGESEV-ANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp EEEEECHHHH-HHTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred EEEEECchhh-hcCeEEEEECCCCCceEEcHHHHHHHHHHhh
Confidence 9999999999 7999999999999999999999999987654
No 21
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=1.3e-42 Score=383.63 Aligned_cols=384 Identities=16% Similarity=0.162 Sum_probs=260.5
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc-CC-cccccCCceeeCCCCcccchhhhHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS-GH-VDRFADLMVKDLKTGECFRLDHLIKA 166 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S-Gh-~~~f~d~m~~d~~~~~~~r~d~l~~~ 166 (679)
.++|++||+|.|++++++|++.+++.| .++||+||.||+|++.++|.+| || |+.+.++||+....
T Consensus 5 ~~~G~~d~lP~~~~~~~~i~~~i~~~~-~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~------------ 71 (421)
T 1h4v_B 5 AVRGTKDLFGKELRMHQRIVATARKVL-EAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR------------ 71 (421)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHH-HHcCCEEecccccccHHHhhhccCCcccccccceEEEECC------------
Confidence 479999999999999999999999999 9999999999999999999998 88 89999999874321
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccc
Q psy17941 167 HLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPET 246 (679)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~ 246 (679)
+++...||||.
T Consensus 72 ---------------------------------------------------------------------~g~~l~Lrpd~ 82 (421)
T 1h4v_B 72 ---------------------------------------------------------------------GGRSLTLRPEG 82 (421)
T ss_pred ---------------------------------------------------------------------CCCEEeeCCcc
Confidence 12345899999
Q ss_pred hhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHh
Q psy17941 247 AQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSAC 326 (679)
Q Consensus 247 aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~ 326 (679)
|.++++.+.+.. +..+++|+++||+|++||+| +|+.| |+|||+|+|+|+|+.+++.+. ..+..++. .+|.++
T Consensus 83 t~~~ar~~~~~~-~~~~~lP~rl~~~g~vfR~e-~p~~g--R~REf~Q~g~e~~g~~~~~ad---~e~i~~~~-~~l~~l 154 (421)
T 1h4v_B 83 TAAMVRAYLEHG-MKVWPQPVRLWMAGPMFRAE-RPQKG--RYRQFHQVNYEALGSENPILD---AEAVVLLY-ECLKEL 154 (421)
T ss_pred hHHHHHHHHhcc-ccccCCCeEEEEecCeecCC-CCCCC--CcccEEEccEEEECCCChhhh---HHHHHHHH-HHHHHc
Confidence 999999997541 12368999999999999999 99988 999999999999998776432 12333333 455543
Q ss_pred hccCCCCceEEeecccccccccccccH-HHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccCCceee
Q psy17941 327 NQMDGKPAERITIGEAVRSNLVANETL-GYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVEC 405 (679)
Q Consensus 327 ~~~~g~~~~~~~~~~a~~~~~i~~~~l-~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~ 405 (679)
| -....+.++..+ |..+ .-|.+.+..++... . ..+ .+++|+
T Consensus 155 g----l~~~~i~i~~~g------~~~~~~~~~~~l~~~l~~~------~---~~l-------~~~~~~------------ 196 (421)
T 1h4v_B 155 G----LRRLKVKLSSVG------DPEDRARYNAYLREVLSPH------R---EAL-------SEDSKE------------ 196 (421)
T ss_pred C----CCceEEEEcCCC------chhhHHHHHHHHHHHHHHH------H---hhc-------CHHHHH------------
Confidence 2 111233333322 1111 00222222222110 0 000 001110
Q ss_pred eeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccc--hhhHHHHHhhhcCHhHHHHHHHhhhc
Q psy17941 406 VGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKK--DAKTICDALAALDLNSVSAVEESLNT 483 (679)
Q Consensus 406 ~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~--~~~~i~d~L~~~~~~~~~~~~~~l~~ 483 (679)
....+++.+.+.. .+ .. ..+-. +++.+.+++.....+++..+...+..
T Consensus 197 ---------------~l~~~~~~~l~~~-~~---------~~-----~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~l~~ 246 (421)
T 1h4v_B 197 ---------------RLEENPMRILDSK-SE---------RD-----QALLKELGVRPMLDFLGEEARAHLKEVERHLER 246 (421)
T ss_pred ---------------HHHhcchHhhhcc-cH---------HH-----HHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0000000000000 00 00 01111 23445444432222334444444443
Q ss_pred CCcEEEeecCceeeeccceeE-Eeeeecccc---------------eeEe-----------ccceeeccccHHHHHHHHH
Q psy17941 484 NGKYELLVDDKEFVLTKDMIS-IKKSTKTFH---------------VEEI-----------IPSVIEPSFGIGRIMYALF 536 (679)
Q Consensus 484 ~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~---------------~~~~-----------~P~vi~~s~GIeRll~al~ 536 (679)
.| ..+.+++.+++ ++||+..++ |++| .|.| |+|+|++|+++++.
T Consensus 247 ~g--------~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg~~~pa~-Gf~igieRl~~~l~ 317 (421)
T 1h4v_B 247 LS--------VPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGV-GFAFGVERVALALE 317 (421)
T ss_pred cC--------CeEEEecccccchhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCCCCCCeE-EEeecHHHHHHHHH
Confidence 33 23444555554 455544321 2333 6765 69999999999988
Q ss_pred HhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEE
Q psy17941 537 EHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFG 616 (679)
Q Consensus 537 e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~ 616 (679)
+++ . +|++.+|++|+|+|++++ ....|.++++.||++ ++|++|+++.++++|+++|+++|+||+
T Consensus 318 e~~------------~-~~~~~~p~~v~i~~~~~~--~~~~a~~l~~~Lr~~-i~v~~d~~~~~~~~~~~~a~~~g~p~~ 381 (421)
T 1h4v_B 318 AEG------------F-GLPEEKGPDLYLIPLTEE--AVAEAFYLAEALRPR-LRAEYALAPRKPAKGLEEALKRGAAFA 381 (421)
T ss_pred hcC------------c-CCCCCCCCeEEEEECChH--HHHHHHHHHHHHHhc-CEEEEecCCCCHHHHHHHHHhCCCCEE
Confidence 763 2 344569999999999743 788999999999999 999999988999999999999999999
Q ss_pred EEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHH
Q psy17941 617 ITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLS 656 (679)
Q Consensus 617 IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~ 656 (679)
||||++|+ ++|+|+||+|+|++|..++++++++.|.+++
T Consensus 382 iivG~~e~-~~~~v~vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 382 GFLGEDEL-RAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred EEECchHh-hcCcEEEEECCCCCceEECHHHHHHHHHHhh
Confidence 99999999 7999999999999999999999999987654
No 22
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00 E-value=8.9e-43 Score=384.83 Aligned_cols=286 Identities=15% Similarity=0.145 Sum_probs=228.2
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHH------------------------cCCChHHH----HHH-HHHHHHHHHHhhHHH
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKA------------------------EGAPELDV----KKA-VAELKLRKKVLDERE 55 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~------------------------~~~~~~~i----~~~-v~~l~~~~~~le~~~ 55 (679)
..+.++++|++++|+.|++|+++|+ ++.+.+++ +++ ++.|++++++|+++.
T Consensus 48 ~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~~~ 127 (484)
T 3lss_A 48 RTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEA 127 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999988 45566677 777 889999998888763
Q ss_pred hhc--------------CCCCCCCChHHHH-HH-HHHhc----c-ccchhhh------c----C----CCCcceeeCcch
Q psy17941 56 LKL--------------APFVSSFDRAKME-DL-LKRRF----F-YDQSFSI------Y----G----GISGQYDFGPMG 100 (679)
Q Consensus 56 ~~~--------------~~~~~~~~~~~~~-~l-~~r~~----f-~~~~~ei------~----~----~~~G~~d~~P~G 100 (679)
.++ .-+++|++.++.+ +. ++++| | ..+|++| + + .++|+|.|+|.|
T Consensus 128 ~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~~n~~v~~~g~~~~~~~rdH~~Lg~~l~l~df~~~a~k~sGsgf~~~~p~G 207 (484)
T 3lss_A 128 QQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGNTTKRAKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGL 207 (484)
T ss_dssp HHHHHHHHHHHTTCCCCCCTTSCCCSCHHHHCEEEEEESCTTCCCSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHH
T ss_pred HHHHHHHHHHHHhCCCCCCccCCCCCCcccCcEEEEecCCCCCCCCCCHHHHHhhCCceeccccccccCCceEEEECCHH
Confidence 321 2268898877765 43 33333 1 2344443 1 1 368999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCch
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQS 180 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~ 180 (679)
++|.++|+++|++.+ .+.||+||.+|.|.+.++|.+||||++|.++||+....++
T Consensus 208 arL~~aL~~f~~d~~-~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~------------------------ 262 (484)
T 3lss_A 208 VQLQVALVSYSLDFL-VKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGD------------------------ 262 (484)
T ss_dssp HHHHHHHHHHHHHHH-HTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSS------------------------
T ss_pred HHHHHHHHHHHHHHH-HHcCCEEEecCccccHHHHHhcCCcccccccceEeecCCc------------------------
Confidence 999999999999999 7899999999999999999999999999999998543222
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhh
Q psy17941 181 VKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEF 260 (679)
Q Consensus 181 ~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~ 260 (679)
.++|.||+|+.++.+.+..+.| |
T Consensus 263 ---------~~~L~PTaE~~l~~l~~~~i~s-----------------------------y------------------- 285 (484)
T 3lss_A 263 ---------KKYLIATSEMPIAAYHRGRWFT-----------------------------E------------------- 285 (484)
T ss_dssp ---------CEEECSSTHHHHHHHTTTCEES-----------------------------C-------------------
T ss_pred ---------ceEEeccCcHHHHHHHhccccc-----------------------------h-------------------
Confidence 1589999999999998887766 4
Q ss_pred ccCCCCeeeecccccccCCCCC----CCCcccccceeEeeEEEEeCCCc-chhhhHHHHHHHHHHHHHHHhhccCCCCce
Q psy17941 261 NSGRLPFAAAQIGNAFRNEISP----RSGLIRVREFTMAEIEHFCDPTD-KSHAKFSDVETTQMMVLYSACNQMDGKPAE 335 (679)
Q Consensus 261 ~~~~LP~~~~qig~~FR~E~~p----r~Gl~R~REF~q~e~~~F~~~~~-~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~ 335 (679)
++||+++|++|+|||+|+++ .+||+|+|||+|+|+|+||.|++ .+...
T Consensus 286 --~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e------------------------- 338 (484)
T 3lss_A 286 --LKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRH------------------------- 338 (484)
T ss_dssp --CSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHH-------------------------
T ss_pred --hhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHH-------------------------
Confidence 89999999999999999965 38999999999999999999987 22221
Q ss_pred EEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccC--Cceeeeeccccch
Q psy17941 336 RITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY--GWVECVGCADRSA 413 (679)
Q Consensus 336 ~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~ 413 (679)
+..++...+.++..+|+++..+. .++++|++++..+||+|+|+|. +|.|+++|++++|
T Consensus 339 -----------------~e~~~~~~e~il~~LGLpyrvv~---l~tgdlg~~a~~~yDiE~w~P~~~~~~EIsS~Snc~d 398 (484)
T 3lss_A 339 -----------------LEDMITTSEEFNKSLGLPYRVVN---ICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTD 398 (484)
T ss_dssp -----------------HHHHHHHHHHHHHHHTCCEEEEE---CCTTTCCSSCSEEEEEEEEETTTTEEEEEEEEEECTT
T ss_pred -----------------HHHHHHHHHHHHHHcCCcEEEEE---cCCcccCCchhheechheecCCCCCeeEEEEecCccc
Confidence 22245556778889999987655 4678999999999999999986 7999999999999
Q ss_pred hhHhHH
Q psy17941 414 YDLTQH 419 (679)
Q Consensus 414 ~dl~~~ 419 (679)
|+.+.+
T Consensus 399 yqArr~ 404 (484)
T 3lss_A 399 YQSQSV 404 (484)
T ss_dssp HHHHHH
T ss_pred cccccc
Confidence 999876
No 23
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=4e-42 Score=384.03 Aligned_cols=408 Identities=16% Similarity=0.145 Sum_probs=244.9
Q ss_pred HHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeC
Q psy17941 73 LLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDL 152 (679)
Q Consensus 73 l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~ 152 (679)
++.|++|+.+. ++|++||+|.+++++++|++.|++.| .++||+||.||+|++.++|.++. +..+++||+..
T Consensus 6 ~~~~~~~~~~~------p~G~~D~lP~~~~~~~~i~~~~~~~~-~~~Gy~eI~tP~le~~el~~~~~--g~~~~~~y~f~ 76 (464)
T 4g84_A 6 FELRRQFVLKT------PKGTRDYSPRQMAVREKVFDVIIRCF-KRHGAEVIDTPVFELKETLMGKY--GEDSKLIYDLK 76 (464)
T ss_dssp -------CCCC------CTTCCCBCHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHTTSC--C----CCCBBC
T ss_pred hhHhhccceeC------CCCcCccCHHHHHHHHHHHHHHHHHH-HHCCCeEEECcccCcHHHhcccc--CcCcceeEEEE
Confidence 55667777654 79999999999999999999999999 99999999999999999997642 23356666521
Q ss_pred CCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhccc
Q psy17941 153 KTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQI 232 (679)
Q Consensus 153 ~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~i 232 (679)
.
T Consensus 77 D------------------------------------------------------------------------------- 77 (464)
T 4g84_A 77 D------------------------------------------------------------------------------- 77 (464)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHH
Q psy17941 233 GPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFS 312 (679)
Q Consensus 233 g~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~ 312 (679)
.+++...||||.|.++.|.+.+. +.+|+++||+|++||+| +|+.|..|.|||+|+++|+|+.++...
T Consensus 78 --~~g~~l~LRPd~T~~~aR~~~~~-----~~~p~k~~y~g~vfR~e-rp~~~~gR~Ref~Q~g~ei~G~~~~~~----- 144 (464)
T 4g84_A 78 --QGGELLSLRYDLTVPFARYLAMN-----KLTNIKRYHIAKVYRRD-NPAMTRGRYREFYQCDFDIAGNFDPMI----- 144 (464)
T ss_dssp --CSSCCEEECSCSHHHHHHHHHHT-----TCSCEEEEEEEEEECCC-C------CCSEEEEEEEEEESCCSTTH-----
T ss_pred --CCCCEEEeCCcCcHHHHHHHHhc-----CCCCceeEEEecceecc-CCccccCccceeeecceeccCCccchh-----
Confidence 02345689999999999887653 67899999999999999 998877899999999999999766432
Q ss_pred HHHHHHH----HHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhh-hccCcccccc
Q psy17941 313 DVETTQM----MVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFR-QHMGNEMAHY 387 (679)
Q Consensus 313 ~v~d~~~----~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r-~~~~~e~~~y 387 (679)
.|+++ ..+|.+++ -....+.+++. + ....++..+|++....+.- ..+. .
T Consensus 145 --aDaEvi~l~~~~l~~lg----l~~~~i~i~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~l~-~---- 198 (464)
T 4g84_A 145 --PDAECLKIMCEILSSLQ----IGDFLVKVNDR-----------R----ILDGMFAICGVSDSKFRTICSSVD-K---- 198 (464)
T ss_dssp --HHHHHHHHHHHHHHHHT----CCCEEEEEEEH-----------H----HHHHHHHHHTCCHHHHHHHHHHHG-G----
T ss_pred --hHHHHHHHHHHHHHHhC----CCCcceeecch-----------h----hHHHHHHhhcCcHHHHHHHHHHHH-H----
Confidence 23333 14455442 11122223221 1 1223344556654432210 0000 0
Q ss_pred ccCccchhhhccCCceee----eeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHH
Q psy17941 388 ACDCWDAECLTSYGWVEC----VGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTIC 463 (679)
Q Consensus 388 a~~~~d~e~~~~~g~~e~----~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~ 463 (679)
+...+|.++ .+......-........... . ..+..++ ...-.+.+.. .....
T Consensus 199 ---------l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~--~-----g~~~~~~-------~~~~~~~~~~-~~~~~ 254 (464)
T 4g84_A 199 ---------LDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQ--H-----GGVSLVE-------QLLQDPKLSQ-NKQAL 254 (464)
T ss_dssp ---------GGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTC--E-----ESHHHHH-------HHTTCHHHHT-CHHHH
T ss_pred ---------hchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHh--c-----CCchHHH-------HHHhcccccc-cHHHH
Confidence 000011000 00000000000000000000 0 0000000 0000000000 01111
Q ss_pred HHhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeE-Eeeeecccc-----------------------eeEe--
Q psy17941 464 DALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMIS-IKKSTKTFH-----------------------VEEI-- 517 (679)
Q Consensus 464 d~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~-----------------------~~~~-- 517 (679)
+.+ +++..+.+.++..|. +..+.+++.+++ ++|||.+++ |++|
T Consensus 255 ~~l-----~~l~~l~~~l~~~g~------~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i~~GGRYD~ 323 (464)
T 4g84_A 255 EGL-----GDLKLLFEYLTLFGI------DDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDG 323 (464)
T ss_dssp HHH-----HHHHHHHHHHHHTTC------GGGEEEETTCCCCTTTCSSEEEEEEEEECC-------EEEEEEEEEEECCS
T ss_pred HHH-----HHHHHHHhHHHhhCC------CcceeecccccCCCcCcCCeEEEEEECCcccccccCCcccceeccCCchhH
Confidence 111 123333333332221 123444555555 455554442 2333
Q ss_pred -----------ccceeeccccHHHHHHHHHHhccccCCCccccccccCCC--CCCCceEEEEecCCCCChHHHHHHHHHH
Q psy17941 518 -----------IPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPP--LVAPLKASILPLSSNPEFQPFIKMLSSE 584 (679)
Q Consensus 518 -----------~P~vi~~s~GIeRll~al~e~~~~~~~~~~~r~~l~~P~--~laP~~V~Vi~l~~~~e~~~~a~~l~~~ 584 (679)
+|+| |+|+|++|++.+|.+++ ..||+ +.+|++|+|++.++ +...++.+|++.
T Consensus 324 L~~~~~~~g~~~pav-GfaigieRl~~~l~~~~------------~~~~~~~~~~~~~v~v~~~~~--~~~~~a~~l~~~ 388 (464)
T 4g84_A 324 LVGMFDPKGRKVPCV-GLSIGVERIFSIVEQRL------------EALEEKIRTTETQVLVASAQK--KLLEERLKLVSE 388 (464)
T ss_dssp TGGGTSTTCCCCCEE-EEEECHHHHHHHHHHHH------------HTTTCCCCSCCCCEEEECSSS--SCHHHHHHHHHH
T ss_pred HHHHhccCCCCCCCc-cccccHHHHHHHHHHhc------------cccCcccccccceEEEEeCCH--HHHHHHHHHHHH
Confidence 5666 79999999998887653 23433 23567888888765 378899999999
Q ss_pred HHHCCCeEEEeC-CCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHhc
Q psy17941 585 LSQNGISFKVDD-SGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLA 658 (679)
Q Consensus 585 Lr~~Gi~v~~D~-~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~~ 658 (679)
||++||+|++|+ .+.++++||++|++.|+||+||||++|+ ++|+|+||+|.||+|..|+++++++.|++.+..
T Consensus 389 Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~-~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~~ 462 (464)
T 4g84_A 389 LWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQEL-KDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 462 (464)
T ss_dssp HHHTTCCEECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHH-HHTEEEEEETTTCCEEEEEGGGHHHHHHHHHTC
T ss_pred HHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhh-hCCEEEEEECCCCCeEEeeHHHHHHHHHHHhcC
Confidence 999999999985 4669999999999999999999999999 799999999999999999999999999987753
No 24
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=7.5e-42 Score=379.02 Aligned_cols=384 Identities=15% Similarity=0.178 Sum_probs=250.9
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhh-cCCcccccCCceeeCCCCcccchhhhHHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKA-SGHVDRFADLMVKDLKTGECFRLDHLIKAH 167 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~-SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~ 167 (679)
.++|++||+|.|++++++|++.|++.| .++||+||.||+|++.++|.+ ||| .+.++||+....
T Consensus 8 ~~~G~~d~lP~~~~~~~~i~~~i~~~~-~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~------------- 71 (434)
T 1wu7_A 8 KIRGFRDFYPEDMDVEKFIFKTAEEAA-EAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDK------------- 71 (434)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECT-------------
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHH-HHcCCEEeeccccccHHHhhhccCC--ccccceEEEECC-------------
Confidence 479999999999999999999999999 999999999999999999998 798 678888873221
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccch
Q psy17941 168 LEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETA 247 (679)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~a 247 (679)
+++...||||.|
T Consensus 72 --------------------------------------------------------------------~g~~l~LrPd~t 83 (434)
T 1wu7_A 72 --------------------------------------------------------------------GGREVTLIPEAT 83 (434)
T ss_dssp --------------------------------------------------------------------TSCEEEECSCSH
T ss_pred --------------------------------------------------------------------CCCEEEeCCCCh
Confidence 123458999999
Q ss_pred hhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhh
Q psy17941 248 QGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACN 327 (679)
Q Consensus 248 qgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~ 327 (679)
.++.+.+.+. .. .++|+++||+|++||+| +|+.| |+|||+|+|+|+|+.+++.+.. .+..++. .+|.+++
T Consensus 84 ~~~aR~~~~~-~~--~~lP~rl~~~g~vfR~e-rp~~g--R~REF~Q~d~ei~g~~~~~ad~---E~i~~~~-~~l~~lg 153 (434)
T 1wu7_A 84 PSTVRMVTSR-KD--LQRPLRWYSFPKVWRYE-EPQAG--RYREHYQFNADIFGSDSPEADA---EVIALAS-SILDRLG 153 (434)
T ss_dssp HHHHHHHTTC-TT--CCSSEEEEECCEEECCC-CSCSS--CCSEEEEEEEEEESCCSHHHHH---HHHHHHH-HHHHHTT
T ss_pred HHHHHHHHhc-CC--CCCCeEEEEEcCeecCC-CCCCC--CccceEEeeEEEEcCCChHhhH---HHHHHHH-HHHHHcC
Confidence 9999999764 11 16899999999999999 99988 9999999999999988764311 2223333 4444432
Q ss_pred ccCCCCc-eEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccCCceeee
Q psy17941 328 QMDGKPA-ERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECV 406 (679)
Q Consensus 328 ~~~g~~~-~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~ 406 (679)
-.. ..+.+++.+ .....+..+| +.........+. + .+ ..+|-+
T Consensus 154 ----l~~~~~i~l~~~g---------------~~~~~~~~~g-~~~~~~l~~~l~--------~-~~-----~~~~~~-- 197 (434)
T 1wu7_A 154 ----LQDIYEIRINSRK---------------IMEEIIGGMT-SSDPFSVFSIID--------R-YH-----KISREE-- 197 (434)
T ss_dssp ----TTTSEEEEEEEHH---------------HHHHHHHTTC-SSCHHHHHHHHH--------T-TT-----TSCHHH--
T ss_pred ----CCCceEEEECChh---------------hHHHHHHHhC-cHhHHHHHHHHH--------H-Hh-----ccchHH--
Confidence 111 223333221 0011111222 211000000000 0 00 000000
Q ss_pred eccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhh------hcCHhHHHHHHHh
Q psy17941 407 GCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALA------ALDLNSVSAVEES 480 (679)
Q Consensus 407 ~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~------~~~~~~~~~~~~~ 480 (679)
........+.+-. .......++ ...+.+.+ |+ ..+-+++..+...
T Consensus 198 ---------~~~~l~~~~l~~~--------------~~~~~~~~~-----~~~~~~~~-l~~~~~~~~~~~~~l~~~~~~ 248 (434)
T 1wu7_A 198 ---------FVDQLRSAGIGED--------------GVSMIADLC-----SGTRGIDE-MARITGKSSEEIARMAAVEDL 248 (434)
T ss_dssp ---------HHHHHHHTTCCHH--------------HHHHHHHHH-----HSCBCHHH-HHHHTTCCCHHHHHHHHHHHH
T ss_pred ---------HHHHHHhCCCCHH--------------HHHHHHHHH-----HhCCCHHH-HHHHHhhHHHHHHHHHHHHHH
Confidence 0000000000000 000000011 00111112 21 0011223334444
Q ss_pred hhcCCcEEEeecCceeeeccceeE-Eeeeeccc--------------ceeEe-----------ccceeeccccHHHHHHH
Q psy17941 481 LNTNGKYELLVDDKEFVLTKDMIS-IKKSTKTF--------------HVEEI-----------IPSVIEPSFGIGRIMYA 534 (679)
Q Consensus 481 l~~~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~--------------~~~~~-----------~P~vi~~s~GIeRll~a 534 (679)
+...|. . .+.+++.+++ ++||+..+ .|++| .|.| |+|+|++|++.+
T Consensus 249 l~~~g~------~-~i~~D~~l~rgldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~pa~-Gf~igveRl~~~ 320 (434)
T 1wu7_A 249 LASYGV------K-NVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPAV-GFGMGDAVISLL 320 (434)
T ss_dssp HHHTTC------C-CCEECTTCCTTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCEE-EEEEEHHHHHHH
T ss_pred HHHcCC------C-EEEECCCcccCccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCCeE-EEEEcHHHHHHH
Confidence 433321 0 1444444444 44444321 24444 5765 699999999999
Q ss_pred HHHhccccCCCccccccccC-CCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCC
Q psy17941 535 LFEHNFKMRDGDEQRTYLAL-PPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAI 613 (679)
Q Consensus 535 l~e~~~~~~~~~~~r~~l~~-P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gi 613 (679)
+.+++ .| |+ +|++|+|+|++++ ...+|.++++.||++|++|++|+++.++++|+++|++.|+
T Consensus 321 l~e~~-------------~~~p~--~p~~v~v~~~~~~--~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g~ 383 (434)
T 1wu7_A 321 LKREN-------------VQIPR--EKKSVYICRVGKI--NSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYASAIGA 383 (434)
T ss_dssp HHHTT-------------CCCCC--SSCEEEEEEESSC--CHHHHHHHHHHHHTTTCEEEECCSCCCHHHHHHHHHHTTC
T ss_pred HHhcC-------------CccCC--CCCcEEEEEcChH--HHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHCCC
Confidence 98763 47 66 7999999998753 6789999999999999999999998999999999999999
Q ss_pred CEEEEEeCCCCCCCCeEEEEECCCCceEEEehHHHHHHHHHHHh
Q psy17941 614 PFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 614 p~~IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el~~~l~~l~~ 657 (679)
||+||||++|+ ++|+|+||+|.+++|..++++++++.|.+++.
T Consensus 384 ~~~iiiG~~e~-~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~~ 426 (434)
T 1wu7_A 384 DFAVIFGERDL-ERGVVTIRNMYTGSQENVGLDSVVEHLISQAT 426 (434)
T ss_dssp SEEEEEEHHHH-HTTEEEEEETTTCCEEEEEGGGHHHHHHHCCC
T ss_pred CEEEEECchhh-hcCeEEEEECCCCCeEEEcHHHHHHHHHHHhh
Confidence 99999999999 79999999999999999999999999887654
No 25
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=6.4e-42 Score=378.97 Aligned_cols=281 Identities=15% Similarity=0.157 Sum_probs=225.1
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhc--------------CCCCCCCChHHH
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKL--------------APFVSSFDRAKM 70 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~--------------~~~~~~~~~~~~ 70 (679)
..+.++++|++++|+.|++|+++|++|.+.++++++++.|++++++|+++..++ .-+++|++.++.
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~g~~e~ 121 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDEN 121 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCC
Confidence 467889999999999999999999999999999999999999999888873331 225788776665
Q ss_pred HHH-HHHhcc----c-----------------------cchhhh---cC----------CCCcceeeCcchHHHHHHHHH
Q psy17941 71 EDL-LKRRFF----Y-----------------------DQSFSI---YG----------GISGQYDFGPMGCALKTNMLS 109 (679)
Q Consensus 71 ~~l-~~r~~f----~-----------------------~~~~ei---~~----------~~~G~~d~~P~G~~l~~~i~~ 109 (679)
+++ +++.|- - .+|.+| .| .++|+|+|+|.|++++++|++
T Consensus 122 ~n~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~lg~~l~l~d~~~~~k~~g~G~~~~~p~ga~l~~aL~~ 201 (455)
T 2dq0_A 122 DNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIR 201 (455)
T ss_dssp GCEEEEEESCEEEEGGGHHHHHHHHTTCSCEEEESSCCCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCccccchhhhcccccccccccccCccCCHHHHHhcCCcEEecccccccCCCeEEECCHHHHHHHHHHH
Confidence 553 333331 1 123332 11 368999999999999999999
Q ss_pred HHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHH
Q psy17941 110 AWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIV 189 (679)
Q Consensus 110 ~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (679)
+|++.+ .++||+||.||+|++.++|++||||++|.++||+... +
T Consensus 202 ~~~~~~-~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d--~--------------------------------- 245 (455)
T 2dq0_A 202 FALDRL-IEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVED--E--------------------------------- 245 (455)
T ss_dssp HHHHHH-HHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBTT--S---------------------------------
T ss_pred HHHHHH-HHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeecC--C---------------------------------
Confidence 999999 9999999999999999999999999999999986321 0
Q ss_pred HhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeee
Q psy17941 190 IKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAA 269 (679)
Q Consensus 190 ~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~ 269 (679)
..||||+++++++..|+... .+.++||+++
T Consensus 246 -------------------------------------------------~l~LrPt~e~~~~~~~~~~~-~s~~~LPlr~ 275 (455)
T 2dq0_A 246 -------------------------------------------------DLYLIPTAEHPLAGMHANEI-LDGKDLPLLY 275 (455)
T ss_dssp -------------------------------------------------SCEECSSTHHHHHHTTTTEE-EETTTCSEEE
T ss_pred -------------------------------------------------cEEEcCcCcHHHHHHHHhCc-cCchhCCEEE
Confidence 23777777777777776543 2347999999
Q ss_pred ecccccccCCCCC----CCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccc
Q psy17941 270 AQIGNAFRNEISP----RSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRS 345 (679)
Q Consensus 270 ~qig~~FR~E~~p----r~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~ 345 (679)
||+|+|||+|+++ .+||+|+|||+|+|++.||.|+++. +.
T Consensus 276 ~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~-~~----------------------------------- 319 (455)
T 2dq0_A 276 VGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESW-EW----------------------------------- 319 (455)
T ss_dssp EEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHH-HH-----------------------------------
T ss_pred EEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHH-HH-----------------------------------
Confidence 9999999999875 4899999999999999999997542 11
Q ss_pred cccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccC--CceeeeeccccchhhHh
Q psy17941 346 NLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY--GWVECVGCADRSAYDLT 417 (679)
Q Consensus 346 ~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~~dl~ 417 (679)
+..++.....++..+|+++..+. .+++++++++..+||+|+|+|. +|.|+.+|++++||+.+
T Consensus 320 -------~~e~l~~~~~il~~LGL~yrv~~---~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~Dfqar 383 (455)
T 2dq0_A 320 -------HEKIIRNAEELFQELEIPYRVVN---ICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQAR 383 (455)
T ss_dssp -------HHHHHHHHHHHHHHTTCCEEEEE---CCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHH
T ss_pred -------HHHHHHHHHHHHHHcCCceEEEE---CCCccccChhhceeeeeeecCcCCcccEEEeeccchhhHhh
Confidence 22356667788889999865433 4567899999999999999985 69999999999999854
No 26
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=1.2e-42 Score=383.48 Aligned_cols=286 Identities=14% Similarity=0.165 Sum_probs=234.9
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhc--------------CCCCCCCChHHH
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKL--------------APFVSSFDRAKM 70 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~--------------~~~~~~~~~~~~ 70 (679)
..+.++++|++++|+.|++|+++|++|.+.++++++++.|++++++|+++..++ .-+++|++.++.
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e~ 123 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEE 123 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcc
Confidence 467889999999999999999999999999999999999999999888773321 225888888777
Q ss_pred HHHHH-Hhc-------------c-c---cchhhh---cC----------CCCcceeeCcchHHHHHHHHHHHHHHHhhhh
Q psy17941 71 EDLLK-RRF-------------F-Y---DQSFSI---YG----------GISGQYDFGPMGCALKTNMLSAWRQFFVLEE 119 (679)
Q Consensus 71 ~~l~~-r~~-------------f-~---~~~~ei---~~----------~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~ 119 (679)
++... ++| + . .+|++| .+ .++|+|.|+|.|++|+++|++++++.+ .+.
T Consensus 124 ~n~~v~~~g~~~~~~~~~~~~~~~~~~~~dH~elg~~l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~d~~-~~~ 202 (485)
T 3qne_A 124 NNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFL-SSK 202 (485)
T ss_dssp GCEEEEEECCTTCCSSSSBCTTTCCBCCSCHHHHHHHTTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHHHHH-HTT
T ss_pred CCEEEEEeCCCCccccccccccccCCCccCHHHHHhhcCCcccccccccccceeEEEecHHHHHHHHHHHHHHHHH-HHc
Confidence 66543 333 1 1 255554 11 368999999999999999999999999 789
Q ss_pred CceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHH
Q psy17941 120 QMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNE 199 (679)
Q Consensus 120 g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee 199 (679)
||+||.+|.|.+.++|++||||++|.++||+....++ .+++.||+|+
T Consensus 203 Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~---------------------------------~~~LipTaE~ 249 (485)
T 3qne_A 203 GYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGED---------------------------------EKYLIATSEQ 249 (485)
T ss_dssp TCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTE---------------------------------EEEECSSTHH
T ss_pred CCEEEeCCccccHHHHhhcCCccccccceEEEeCCCC---------------------------------eEEEeccccH
Confidence 9999999999999999999999999999998543221 1479999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCccc-ccCccchhhHHHHHHHhhhhccCCCCeeeecccccccC
Q psy17941 200 MDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKG-YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRN 278 (679)
Q Consensus 200 ~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~-yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~ 278 (679)
.++.+.+..+.+ + | ++||++++|+|+|||+
T Consensus 250 pl~~l~~~ei~~----------------------------S~y---------------------~dLPlr~~~~s~cfR~ 280 (485)
T 3qne_A 250 PISAYHAGEWFE----------------------------SPA---------------------EQLPVRYAGYSSCFRR 280 (485)
T ss_dssp HHHHHTTTCEES----------------------------SHH---------------------HHCCEEEEEEEEEECS
T ss_pred HHHHHHhccccc----------------------------cch---------------------hcCCeeEEEecccccC
Confidence 999887765542 1 4 7999999999999999
Q ss_pred CCCC----CCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHH
Q psy17941 279 EISP----RSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLG 354 (679)
Q Consensus 279 E~~p----r~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~ 354 (679)
|+++ ++||+|+|||+|+|+|+||.|+++. +.|.
T Consensus 281 Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~-~e~e------------------------------------------ 317 (485)
T 3qne_A 281 EAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSW-EEFD------------------------------------------ 317 (485)
T ss_dssp CCC-----CCSSSSCSEEEEEEEEEEECGGGHH-HHHH------------------------------------------
T ss_pred CCCCCCccCCCceeeeeeeeeeEEEEeCHHHHH-HHHH------------------------------------------
Confidence 9976 6999999999999999999997643 2222
Q ss_pred HHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccC--CceeeeeccccchhhHhHH
Q psy17941 355 YFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY--GWVECVGCADRSAYDLTQH 419 (679)
Q Consensus 355 ~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~~dl~~~ 419 (679)
.++...+.++..+|+++..+. .++++|++++..+||+|+|+|. +|.|+++|++++||+.+..
T Consensus 318 ~ml~~~e~il~~LgLpyrvv~---~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~ 381 (485)
T 3qne_A 318 RMIGCSEEFYQSLGLPYRVVG---IVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNL 381 (485)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE---CCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHT
T ss_pred HHHHHHHHHHHHCCCcEEEEE---cCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCcccccc
Confidence 244556677888999987665 4668999999999999999986 6999999999999998754
No 27
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=3.5e-42 Score=382.15 Aligned_cols=295 Identities=14% Similarity=0.136 Sum_probs=218.1
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcCCChH------HHHH----------------HHH----HHHHHHHHhhHH----
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEGAPEL------DVKK----------------AVA----ELKLRKKVLDER---- 54 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~------~i~~----------------~v~----~l~~~~~~le~~---- 54 (679)
..+.++++|++++|+.|++|+++|++|.++. ++.+ +++ .|++++++|+++
T Consensus 45 ~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~ 124 (522)
T 3vbb_A 45 RCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKL 124 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCGGGCSSSSCCHHHHHTTCSSSHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4678999999999999999999988765321 0100 111 133344333333
Q ss_pred ---Hhh-c------CCCCCCCChHHH-HHHH-HHhcc-----ccchhhh---cC----------CCCcceeeCcchHHHH
Q psy17941 55 ---ELK-L------APFVSSFDRAKM-EDLL-KRRFF-----YDQSFSI---YG----------GISGQYDFGPMGCALK 104 (679)
Q Consensus 55 ---~~~-~------~~~~~~~~~~~~-~~l~-~r~~f-----~~~~~ei---~~----------~~~G~~d~~P~G~~l~ 104 (679)
... + .-+++|++.++. +++. +++|= ..+|++| .| .++|+|.|+|.|++|+
T Consensus 125 ~~~~~~~l~~iPN~~~~~vP~g~~e~~dn~~vr~~g~~~~~~~rdH~eLg~~l~l~dfe~~~kvsGsgfy~l~p~GarL~ 204 (522)
T 3vbb_A 125 EAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLE 204 (522)
T ss_dssp HHHHHHHGGGSCCCCCTTSCCCSCHHHHCEEEEEESCSSCCCSCCHHHHHHHTTCEECHHHHHHHSTTCCEEETHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCCcccCcEEEEEeCCCCCCCccCHHHHHHhcCcEecccccccCCcceEEEcCHHHHHH
Confidence 111 1 226899988777 6643 33332 1355554 11 3689999999999999
Q ss_pred HHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhH
Q psy17941 105 TNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEE 184 (679)
Q Consensus 105 ~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~ 184 (679)
++|+++|++.+ .+.||+||.||.|.+.++|.+||||++|.++||+....+..-+ |+ .
T Consensus 205 raL~~f~~d~~-~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~-~~------------------~--- 261 (522)
T 3vbb_A 205 QALIQYALRTL-GSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKS-DD------------------N--- 261 (522)
T ss_dssp HHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC--------------------------------
T ss_pred HHHHHHHHHHH-HHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCcccc-cc------------------c---
Confidence 99999999999 8999999999999999999999999999999998643211000 00 0
Q ss_pred HHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCC
Q psy17941 185 CADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGR 264 (679)
Q Consensus 185 ~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~ 264 (679)
.-..++|.||+|+.++.+.+..+.+ | ++
T Consensus 262 --~~~~l~L~PTaE~~l~~l~~~ei~s-----------------------------~---------------------~d 289 (522)
T 3vbb_A 262 --SYDEKYLIATSEQPIAALHRDEWLR-----------------------------P---------------------ED 289 (522)
T ss_dssp ----CCEEECSSTHHHHHTTSTTCEEC-----------------------------T---------------------TT
T ss_pred --cCcceeEcccCcHHHHHHHhhhecc-----------------------------c---------------------cc
Confidence 0001589999999988877766665 4 89
Q ss_pred CCeeeecccccccCCCC----CCCCcccccceeEeeEEEEeCCCc-chhhhHHHHHHHHHHHHHHHhhccCCCCceEEee
Q psy17941 265 LPFAAAQIGNAFRNEIS----PRSGLIRVREFTMAEIEHFCDPTD-KSHAKFSDVETTQMMVLYSACNQMDGKPAERITI 339 (679)
Q Consensus 265 LP~~~~qig~~FR~E~~----pr~Gl~R~REF~q~e~~~F~~~~~-~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~ 339 (679)
||+++||+|+|||+|++ +++||+|+|||+|+|+++||.|++ .+...
T Consensus 290 LPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e----------------------------- 340 (522)
T 3vbb_A 290 LPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEM----------------------------- 340 (522)
T ss_dssp CCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHH-----------------------------
T ss_pred CCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHH-----------------------------
Confidence 99999999999999985 469999999999999999999987 22221
Q ss_pred cccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccC--CceeeeeccccchhhHh
Q psy17941 340 GEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY--GWVECVGCADRSAYDLT 417 (679)
Q Consensus 340 ~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~~dl~ 417 (679)
+..++...+.++..||+++..+. .++++|++++..+||+|+|+|. +|.|+++|++++||+.+
T Consensus 341 -------------~e~ml~~~e~il~~LGLpyrvv~---l~tgdlg~~asktyDiE~w~P~~~~y~EIsScSnc~DyqAr 404 (522)
T 3vbb_A 341 -------------FEEMITTAEEFYQSLGIPYHIVN---IVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQAR 404 (522)
T ss_dssp -------------HHHHHHHHHHHHHHTTCCEEEEE---CCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHH
T ss_pred -------------HHHHHHHHHHHHHHcCCceEEEE---cCCccCCCchhheeceeEecCCCCceeEEEEecCCCCCccc
Confidence 22245566778889999977654 4678999999999999999997 69999999999999998
Q ss_pred HH
Q psy17941 418 QH 419 (679)
Q Consensus 418 ~~ 419 (679)
.+
T Consensus 405 r~ 406 (522)
T 3vbb_A 405 RL 406 (522)
T ss_dssp HH
T ss_pred ee
Confidence 65
No 28
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=4.5e-42 Score=378.04 Aligned_cols=280 Identities=17% Similarity=0.252 Sum_probs=223.5
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhc--------------CCCCCCCChHHH
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKL--------------APFVSSFDRAKM 70 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~--------------~~~~~~~~~~~~ 70 (679)
..+.++++|++++|+.|++|+++|++|.+.++++++++.|++++++|+++..++ .-+++|.|.++.
T Consensus 41 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g~~e~ 120 (425)
T 2dq3_A 41 EIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDEK 120 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCSSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcc
Confidence 467889999999999999999999988888888889999998888887763321 225788877665
Q ss_pred HHH-HHHhc----c---ccchhhh---cC----------CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcc
Q psy17941 71 EDL-LKRRF----F---YDQSFSI---YG----------GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSIL 129 (679)
Q Consensus 71 ~~l-~~r~~----f---~~~~~ei---~~----------~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l 129 (679)
++. +++.| | ..+|.++ .| .++|+|+|+|.|++++++|+++|++.| .++||.||.||+|
T Consensus 121 ~n~~~~~~g~~~~~~f~~~~H~~l~~~l~l~d~~~~~~~~g~G~~~~~p~ga~l~~~L~~~~~~~~-~~~Gy~ev~tP~l 199 (425)
T 2dq3_A 121 DNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLH-TKKGYKEICPPHL 199 (425)
T ss_dssp GCEEEEEESCCCCCSSCCCCHHHHHHHTTCEEHHHHHHHHCSSCCEEETHHHHHHHHHHHHHHHHH-HHTTCEEEECCSE
T ss_pred CcEEEEEeCCCCCCCCCcccHHHHHhhCCeEEecccccccCCCceEECcHHHHHHHHHHHHHHHHH-HHcCCEEEECCcc
Confidence 543 33333 1 1134333 11 269999999999999999999999999 7999999999999
Q ss_pred cchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCC
Q psy17941 130 TLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNI 209 (679)
Q Consensus 130 ~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i 209 (679)
++.++|++||||++|.++||+...
T Consensus 200 ~~~~l~~~sG~~~~f~~emy~~~~-------------------------------------------------------- 223 (425)
T 2dq3_A 200 VKPEILIGTGQLPKFEEDLYKCER-------------------------------------------------------- 223 (425)
T ss_dssp ECHHHHHHHSCTTTTGGGSCBCTT--------------------------------------------------------
T ss_pred ccHHHHHhcCCCCcChhhheEecC--------------------------------------------------------
Confidence 999999999999999999986321
Q ss_pred CCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCC----CCCC
Q psy17941 210 KSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEIS----PRSG 285 (679)
Q Consensus 210 ~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~----pr~G 285 (679)
...||||++++++++.|+..+. +.++||+++||+|+|||+|++ +++|
T Consensus 224 ----------------------------~~l~LrPt~e~~i~~~~~~~i~-s~~~LPlrl~~~g~~FR~E~~~~Gr~~~G 274 (425)
T 2dq3_A 224 ----------------------------DNLYLIPTAEVPLTNLYREEIL-KEENLPIYLTAYTPCYRREAGAYGKDIRG 274 (425)
T ss_dssp ----------------------------TCCEECSSTHHHHHGGGTTEEE-ETTTCCEEEEEEEEEECCCCSCCSSSCSS
T ss_pred ----------------------------CeEEEcCCCcHHHHHHHHhhcc-ccccCCeEEEEecCEecCCCCcccccccC
Confidence 1237888888888877765432 347899999999999999985 5899
Q ss_pred cccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHH
Q psy17941 286 LIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMI 365 (679)
Q Consensus 286 l~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~ 365 (679)
|+|+|||+|+|+++||.|+++. .. +..+++....++.
T Consensus 275 l~R~reF~q~E~~~f~~pe~s~-~~------------------------------------------~~e~i~~~~~il~ 311 (425)
T 2dq3_A 275 IIRQHQFDKVELVKIVHPDTSY-DE------------------------------------------LEKLVKDAEEVLQ 311 (425)
T ss_dssp SSSCSEEEEEEEEEEECGGGHH-HH------------------------------------------HHHHHHHHHHHHH
T ss_pred cccccceEEeeEEEECCHHHHH-HH------------------------------------------HHHHHHHHHHHHH
Confidence 9999999999999999997642 11 2235666778888
Q ss_pred HcCCCccchhhhhccCccccccccCccchhhhccC--CceeeeeccccchhhH
Q psy17941 366 SVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY--GWVECVGCADRSAYDL 416 (679)
Q Consensus 366 ~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~~dl 416 (679)
.+|+++..+. ...+++++++..++|+|+|.+. +|.|+++|+++.||+.
T Consensus 312 ~LGL~~rvv~---l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~~Dfqa 361 (425)
T 2dq3_A 312 LLGLPYRVVE---LCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQA 361 (425)
T ss_dssp HHTCCEEEEE---CCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHH
T ss_pred HCCCceEEEE---ecCCcCCChHHhccchhhccchhHHHHHHHHcCCccccCc
Confidence 9999865443 4567899999999999999985 8999999999999973
No 29
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=5.3e-42 Score=376.79 Aligned_cols=278 Identities=14% Similarity=0.118 Sum_probs=221.3
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhc--------------CCCCCCCChHHH
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKL--------------APFVSSFDRAKM 70 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~--------------~~~~~~~~~~~~ 70 (679)
..+.++++|++++|+.|++|++ ++|.+.++++++++.|++++++|+++..++ .-+++|++ ++.
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g-~e~ 115 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPK--APPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG-GEE 115 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSS-SGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-Ccc
Confidence 4678999999999999999998 455667789999999999999888763321 22578887 555
Q ss_pred HHH-HHHhcc-------ccchhhh---cC---------CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCccc
Q psy17941 71 EDL-LKRRFF-------YDQSFSI---YG---------GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILT 130 (679)
Q Consensus 71 ~~l-~~r~~f-------~~~~~ei---~~---------~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~ 130 (679)
++. +++.|- ..+|.+| .| .++|+|+|+|.|++++++|+++|++.+ .++||+||.||+|+
T Consensus 116 ~n~~~~~~g~~~~~~~~~~~H~~lg~~l~l~d~~~~~~~g~G~~~~~p~ga~l~~aL~~~~~~~~-~~~Gy~ev~tP~l~ 194 (421)
T 1ses_A 116 ANREIKRVGGPPEFSFPPLDHVALMEKNGWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFM-ARRGFLPMTLPSYA 194 (421)
T ss_dssp GCEEEEEESCCCCCSSCCCCHHHHHHHHTCBCTTHHHHHCSSCCCEETHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEE
T ss_pred ccEEEEEeCCCCccCCCCCCHHHHHHHcCccccccccccCCCeEEECcHHHHHHHHHHHHHHHHH-HHcCCEEEeCCcee
Confidence 543 333331 1234433 11 258999999999999999999999999 79999999999999
Q ss_pred chhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCC
Q psy17941 131 LEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIK 210 (679)
Q Consensus 131 ~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~ 210 (679)
+.++|++||||++|.++||+... .+ ++|.||+++.++.+.+.++.
T Consensus 195 ~~~l~~~sG~~~~f~~emy~~~d-~~----------------------------------l~L~Pt~e~~~~~~~~~~~~ 239 (421)
T 1ses_A 195 REKAFLGTGHFPAYRDQVWAIAE-TD----------------------------------LYLTGTAEVVLNALHSGEIL 239 (421)
T ss_dssp EHHHHHHHTCTTTTGGGSCBBTT-SS----------------------------------EEECSSTHHHHHHTTTTCEE
T ss_pred cHHHHHhcCCCCcCchhcEEEcC-Ce----------------------------------EEEeecCcHHHHHHhccccc
Confidence 99999999999999999998642 11 46888888887776655443
Q ss_pred CCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCC----CCCCCc
Q psy17941 211 SPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEI----SPRSGL 286 (679)
Q Consensus 211 ~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~----~pr~Gl 286 (679)
+ | ++||+++||+|+|||+|+ +|++||
T Consensus 240 s-----------------------------~---------------------~~LPlr~~~~g~~FR~E~g~~Gr~~~GL 269 (421)
T 1ses_A 240 P-----------------------------Y---------------------EALPLRYAGYAPAFRSEAGSFGKDVRGL 269 (421)
T ss_dssp E-----------------------------G---------------------GGCSEEEEEEEEEECCCCSCCCSCCCTT
T ss_pred C-----------------------------c---------------------hhCCEEEEecCCeecCCccccCcCCCCC
Confidence 3 3 799999999999999999 889999
Q ss_pred ccccceeEeeEEEEeCC--CcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHH
Q psy17941 287 IRVREFTMAEIEHFCDP--TDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFM 364 (679)
Q Consensus 287 ~R~REF~q~e~~~F~~~--~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l 364 (679)
+|+|||+|+|++.||.| +++ ... +..++.....++
T Consensus 270 ~R~rqF~q~E~~~f~~p~~e~s-~~~------------------------------------------~~e~~~~~~~il 306 (421)
T 1ses_A 270 MRVHQFHKVEQYVLTEASLEAS-DRA------------------------------------------FQELLENAEEIL 306 (421)
T ss_dssp SSCSEEEEEEEEEEECSCHHHH-HHH------------------------------------------HHHHHHHHHHHH
T ss_pred eeeeeeeeeeEEEEeCCCHHHH-HHH------------------------------------------HHHHHHHHHHHH
Confidence 99999999999999999 433 111 223556677888
Q ss_pred HHcCCCccchhhhhccCccccccccCccchhhhccC--CceeeeeccccchhhHh
Q psy17941 365 ISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY--GWVECVGCADRSAYDLT 417 (679)
Q Consensus 365 ~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~~dl~ 417 (679)
..+|+++..+. .+.++|++++..++|+|+|.|. +|.|+++|++++||+.+
T Consensus 307 ~~LGL~~rvv~---l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s~~~Dfqar 358 (421)
T 1ses_A 307 RLLELPYRLVE---VATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQAR 358 (421)
T ss_dssp HHTTCCEEEEE---CCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHH
T ss_pred HHCCCceEEEE---ecCccCCchhhhcccHhheechhccchheeeccccchhhhh
Confidence 99999865433 4567899999999999999986 79999999999999854
No 30
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=1.7e-40 Score=369.85 Aligned_cols=286 Identities=14% Similarity=0.101 Sum_probs=226.3
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHcCC--------ChHHHHHHHHHHHHHHHHhhHHHhhc--------------CCCC
Q psy17941 5 KVEAELAPLRAAVKEQGDIVRALKAEGA--------PELDVKKAVAELKLRKKVLDERELKL--------------APFV 62 (679)
Q Consensus 5 ~~~~~~~~l~a~~~~~~~~v~~lk~~~~--------~~~~i~~~v~~l~~~~~~le~~~~~~--------------~~~~ 62 (679)
..+.++++|++++|+.|++|+++|++|. +.++++++++.|++++++|+++..++ .-++
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~ 160 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPD 160 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 4578899999999999999999887653 45688999999999999887763321 2257
Q ss_pred CCCChHHHHHHHHHhcc----c---cchhhh------c----C---CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCce
Q psy17941 63 SSFDRAKMEDLLKRRFF----Y---DQSFSI------Y----G---GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQML 122 (679)
Q Consensus 63 ~~~~~~~~~~l~~r~~f----~---~~~~ei------~----~---~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ 122 (679)
+|++.++...++++.|- - .+|.+| + + .++|+|.|+|.|++|+++|++++++.+ .+.||+
T Consensus 161 vP~g~e~~n~~v~~~g~~~~~~f~~~dH~~Lg~~lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~~-~~~Gy~ 239 (501)
T 1wle_A 161 VPVGDESQARVLHVVGDKPAFSFQPRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKL-IHRGFT 239 (501)
T ss_dssp CCCSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHH-HHTTCE
T ss_pred CCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHhhcCceecccccccccCceEEEcChHHHHHHHHHHHHHHHH-HHcCCE
Confidence 88773332224444332 1 234333 1 1 258999999999999999999999999 799999
Q ss_pred EeecCcccchhhhhhcCCcccccC-CceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHH
Q psy17941 123 EVDCSILTLEPVLKASGHVDRFAD-LMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMD 201 (679)
Q Consensus 123 ev~~P~l~~~~v~~~SGh~~~f~d-~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~ 201 (679)
||.+|.|.+.++|++||||++|.+ +||+....+. + .++|.||+|+.+
T Consensus 240 eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~----~----------------------------~l~L~PTaE~~~ 287 (501)
T 1wle_A 240 PMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRF----E----------------------------DLNLAGTAEVGL 287 (501)
T ss_dssp EEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTS----S----------------------------SCEECSSHHHHH
T ss_pred EEeCCccccHHHHHhhcCCCccCccccEEEecCCC----C----------------------------eEEECCcCcHHH
Confidence 999999999999999999999999 9998543211 0 147999999999
Q ss_pred HHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCC
Q psy17941 202 DVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEIS 281 (679)
Q Consensus 202 ~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~ 281 (679)
+.+.+..+.+ | ++||+++||+|+|||+|++
T Consensus 288 ~~l~~~~i~s-----------------------------~---------------------~~LPlrl~~~s~~FR~Ea~ 317 (501)
T 1wle_A 288 AGYFMDHSVA-----------------------------F---------------------RDLPIRMVCSSTCYRAETD 317 (501)
T ss_dssp HHHHTTEEEE-----------------------------G---------------------GGCSEEEEEEEEEECCCCS
T ss_pred HHHHhhccCC-----------------------------c---------------------ccCCeeEEeccCcccCCCC
Confidence 9888876655 4 8999999999999999988
Q ss_pred ---CCCCcccccceeEeeEEEEeCCC-cchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHH
Q psy17941 282 ---PRSGLIRVREFTMAEIEHFCDPT-DKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFM 357 (679)
Q Consensus 282 ---pr~Gl~R~REF~q~e~~~F~~~~-~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~ 357 (679)
+++||+|+|||+|+|+|+||.|+ +.+... +..++
T Consensus 318 ~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~------------------------------------------~e~~l 355 (501)
T 1wle_A 318 TGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSEL------------------------------------------LEEFL 355 (501)
T ss_dssp CC--CCSSSSCSEEEEEEEEEEECSSHHHHHHH------------------------------------------HHHHH
T ss_pred CCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHH------------------------------------------HHHHH
Confidence 58999999999999999999996 333222 22245
Q ss_pred HHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccC--CceeeeeccccchhhHhH
Q psy17941 358 ARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY--GWVECVGCADRSAYDLTQ 418 (679)
Q Consensus 358 ~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~--g~~e~~~~~~r~~~dl~~ 418 (679)
...+.++..+|+++..+. .++++|++++..++|+|+|+|. +|.|+++|++++||+.+.
T Consensus 356 ~~~~~il~~LgLpyrvv~---l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~sn~~DfqarR 415 (501)
T 1wle_A 356 SLQMEILTELGLHFRVLD---MPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRR 415 (501)
T ss_dssp HHHHHHHHHTTCCEEEEE---CCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHH
T ss_pred HHHHHHHHHCCCcEEEEE---ccCcccCCchhheecHhhcccccccceeEEeccccccchhhh
Confidence 566778889999976544 4667999999999999999986 599999999999998653
No 31
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=5.6e-41 Score=374.78 Aligned_cols=411 Identities=21% Similarity=0.263 Sum_probs=256.0
Q ss_pred HHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCC-cee
Q psy17941 72 DLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADL-MVK 150 (679)
Q Consensus 72 ~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~-m~~ 150 (679)
++|.+.+.+.+. .++|+.||+|.++++++.|++.+++.| .++||.+|.||+|++.++|.++| +. ..+ ||+
T Consensus 2 ~~~~~~~~~~~~-----~p~G~~D~lP~~~~~~~~i~~~l~~~~-~~~Gy~~i~tP~~E~~~~~~~~G--~~-~ke~m~~ 72 (465)
T 3net_A 2 NAMAKNDKINFS-----TPSGFPEFLPSEKRLELYLLDTIRRVY-ESYGFTPIETPAVERLEVLQAKG--NQ-GDNIIYG 72 (465)
T ss_dssp -------CCCCS-----CCTTCCCCCHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEHHHHHGGG--CC---CBEEE
T ss_pred ccccCCcccccc-----CCCCccccCHHHHHHHHHHHHHHHHHH-HHcCCEEeeccccccHHHHhccC--CC-CccceEE
Confidence 356666766544 389999999999999999999999999 99999999999999999999887 33 345 887
Q ss_pred eCCC---CcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhh
Q psy17941 151 DLKT---GECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLM 227 (679)
Q Consensus 151 d~~~---~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlm 227 (679)
.... |. ++ .+ ..+
T Consensus 73 ~~d~~~~g~-----~~-----------------------------------------~~--~~~---------------- 88 (465)
T 3net_A 73 LEPILPPNR-----QA-----------------------------------------EK--DKS---------------- 88 (465)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred Eeccccccc-----cc-----------------------------------------cc--ccc----------------
Confidence 4321 21 00 00 000
Q ss_pred hhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcch
Q psy17941 228 FATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKS 307 (679)
Q Consensus 228 f~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~ 307 (679)
+..+++...||||.|.++.+.+.... +...+|+++||+|+|||+| +|+.| |+|||+|+++|+|+.++..+
T Consensus 89 -----~~~~g~~l~LRpd~T~~~aR~~~~~~--~~~~~p~r~~y~g~vfR~e-~~~~g--r~Ref~Q~g~ei~G~~~~~a 158 (465)
T 3net_A 89 -----GDTGSEARALKFDQTVPLAAYIARHL--NDLTFPFARYQMDVVFRGE-RAKDG--RFRQFRQCDIDVVGREKLSL 158 (465)
T ss_dssp ----------CCEEECSCSHHHHHHHHHHHG--GGSCSSEEEEECCEEECBC---------CCEEEEEEEEEECSSCCCH
T ss_pred -----cCCCCCEEEeCCCChHHHHHHHHhcc--cccCCCeEEEEeccEEecC-CCCCC--CcceeEEeeEEEECCCCccc
Confidence 00023567999999999999998764 2357899999999999999 89888 99999999999999877553
Q ss_pred hhhHHHHHHHHHH----HHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchh-hhhccCc
Q psy17941 308 HAKFSDVETTQMM----VLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLR-FRQHMGN 382 (679)
Q Consensus 308 ~~~~~~v~d~~~~----~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~-~r~~~~~ 382 (679)
+ .|++++ .+|..++ -....+.+++. .....++..+|++..... +...+
T Consensus 159 ~------~DaEvi~l~~~~l~~lg----l~~~~i~in~~---------------~~l~~~l~~~g~~~~~~~~~~~~l-- 211 (465)
T 3net_A 159 L------YDAQMPAIITEIFEAVN----IGDFVIRINNR---------------KVLTGFFQSLNISETQIKSCISII-- 211 (465)
T ss_dssp H------HHHHHHHHHHHHHHHHT----CSCEEEEEEEH---------------HHHHHHHHHTTCCHHHHHHHHHHH--
T ss_pred h------hhHHHHHHHHHHHHHcC----CCceEEEECCH---------------HHHHHHHHHcCCCHHHHHHHHHHH--
Confidence 1 244441 3333332 11123333321 112334455666543111 00000
Q ss_pred cccccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHH
Q psy17941 383 EMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTI 462 (679)
Q Consensus 383 e~~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i 462 (679)
++.|. .+|.++ .......+.+-...+.+ .. -..+.|+ ...+
T Consensus 212 -------d~~~~-----~~~~~~-----------~~~l~~~~l~~~~~~~l-----~~------l~~~~g~-----~~~~ 252 (465)
T 3net_A 212 -------DNLEK-----IGEAKV-----------KLELEKEGINPEQTQKI-----ID------FVKIDGS-----VDDV 252 (465)
T ss_dssp -------TTHHH-----HHHHHH-----------HHHHHHTTCCHHHHHHH-----HH------HHTCCSC-----HHHH
T ss_pred -------Hhccc-----cCHHHH-----------HHHHHhcCCCHHHHHHH-----HH------HHHhcCC-----hHHH
Confidence 00000 011000 00000001000000000 00 0001121 1112
Q ss_pred HHHhhhc------CH---hHHHHHHHh-hhcCCcEEEeecCce----eeeccceeE-Eeeeecccc--------------
Q psy17941 463 CDALAAL------DL---NSVSAVEES-LNTNGKYELLVDDKE----FVLTKDMIS-IKKSTKTFH-------------- 513 (679)
Q Consensus 463 ~d~L~~~------~~---~~~~~~~~~-l~~~g~~~~~~~g~~----f~i~~~~v~-~~~y~~~~~-------------- 513 (679)
++.|..+ ++ +.++++... |+. + +.+ . +.+++.+++ ++|||..++
T Consensus 253 l~~l~~~~~~~~~~~~~~~~l~~l~~~~l~~-----~-~~~-~~~~~~~~D~~lvrgldYYtG~vFe~~~~~~~~~~~i~ 325 (465)
T 3net_A 253 LDKLKHLSQTLPESEQFNLGVSELETVITGV-----R-NLG-VPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSIC 325 (465)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-----H-HTT-CCGGGEEECTTCCCCSSSEEEEEEEEEETTCGGGCCSS
T ss_pred HHHHHHhhhccccChHHHHHHHHHHHHHHHH-----h-ccc-ccCceEEEccCccCCCcccCceEEEEEECCCCccceec
Confidence 2222111 11 112233333 211 0 112 4 677778888 788877554
Q ss_pred -eeEe-----------ccceeeccccHHHHHHHHHHhccccCCCccccccccCCC-CCCCceEEEEecCCCCChHHHHHH
Q psy17941 514 -VEEI-----------IPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPP-LVAPLKASILPLSSNPEFQPFIKM 580 (679)
Q Consensus 514 -~~~~-----------~P~vi~~s~GIeRll~al~e~~~~~~~~~~~r~~l~~P~-~laP~~V~Vi~l~~~~e~~~~a~~ 580 (679)
|++| +|+| |+|+|+||++.+|.+++ .||. +.+|++|+|+|+++ +...+|.+
T Consensus 326 ~GGRYD~L~~~f~g~~~pav-GfaiGieRli~~L~e~g-------------~~p~~~~~p~~V~Vi~~~~--~~~~~A~~ 389 (465)
T 3net_A 326 SGGRYEELVGTFIGEKMPGV-GISIGLTRLISRLLKAG-------------ILNTLPPTPAQVVVVNMQD--ELMPTYLK 389 (465)
T ss_dssp EEEEESSSSGGGTCSCCCEE-EEEEEHHHHHHHHHHTT-------------SSCCCCSCSCCEEECCSCG--GGHHHHHH
T ss_pred ccccHHHHhhhhcCCCCcee-eeeccHHHHHHHHHHcC-------------CCCCcCCCCCeEEEEEcCH--HHHHHHHH
Confidence 5666 2666 79999999999998863 3786 78999999999864 37889999
Q ss_pred HHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCC-eEEEEECCCCceEEEehHHHHHHHHHHH
Q psy17941 581 LSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPH-SVTLRERDSMTQVRVKVNEVASVIKDLS 656 (679)
Q Consensus 581 l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g-~Vtlr~r~t~~q~~v~i~el~~~l~~l~ 656 (679)
+++.||++|++|++|+++.++++|+++|++.|+||+||||++ + ++| +|+||+|.|++|..|+++++++.|++++
T Consensus 390 la~~LR~~Gi~ve~d~~~~sl~~q~k~A~~~g~p~~iiiG~~-~-~~g~~V~vk~~~t~eq~~v~~~el~~~l~~~l 464 (465)
T 3net_A 390 VSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGAD-E-AAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465)
T ss_dssp HHHHHHHTTCCEEECCSCCCHHHHHHHHHHHTCCEEEECCHH-H-HHTTCCEEEETTTTEEEECC-CCHHHHHHHTC
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCEEEEECch-h-hcCCEEEEEECCCCceEEeeHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999 8 799 9999999999999999999999887653
No 32
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=2.2e-39 Score=360.29 Aligned_cols=382 Identities=15% Similarity=0.158 Sum_probs=243.9
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc-CCcccccCCceeeCCCCcccchhhhHHHHH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS-GHVDRFADLMVKDLKTGECFRLDHLIKAHL 168 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S-Gh~~~f~d~m~~d~~~~~~~r~d~l~~~~~ 168 (679)
++|++||+|.++++++.|++.+++.| .++||.||.||+|++.++|.++ ||. +.++||+....
T Consensus 32 p~G~~d~lP~~~~~~~~i~~~i~~~~-~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~-------------- 94 (456)
T 3lc0_A 32 VQGCRDFPPEAMRCRRHLFDVFHATA-KTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITK-------------- 94 (456)
T ss_dssp STTCCCCCHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECS--------------
T ss_pred CCCCcccCHhHHHHHHHHHHHHHHHH-HHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcC--------------
Confidence 79999999999999999999999999 9999999999999999999874 874 56677763211
Q ss_pred HHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchh
Q psy17941 169 EKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQ 248 (679)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aq 248 (679)
+++...||||.|.
T Consensus 95 -------------------------------------------------------------------~g~~l~LRpd~T~ 107 (456)
T 3lc0_A 95 -------------------------------------------------------------------GGHRVALRPEMTP 107 (456)
T ss_dssp -------------------------------------------------------------------SSCEEEECSCSHH
T ss_pred -------------------------------------------------------------------CCCEEecCCcCHH
Confidence 2334589999999
Q ss_pred hHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHhhc
Q psy17941 249 GIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQ 328 (679)
Q Consensus 249 gi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~ 328 (679)
++.+.+.+... ...+|+++||+|+|||+| +|+.| |+|||+|+++|+|+.++..+.. .+..+.. .+|..++
T Consensus 108 ~~aR~~~~~~~--~~~~P~r~~y~g~vfR~e-~~~~g--R~ReF~Q~g~ei~G~~~~~~Da---Evi~l~~-~~l~~lg- 177 (456)
T 3lc0_A 108 SLARLLLGKGR--SLLLPAKWYSIPQCWRYE-AITRG--RRREHYQWNMDIVGVKSVSAEV---ELVCAAC-WAMRSLG- 177 (456)
T ss_dssp HHHHHHHHSCT--TCCSSEEEEECCEEECCC-C-------CCEEEEEEEEEESCCSTHHHH---HHHHHHH-HHHHHTT-
T ss_pred HHHHHHHhcCc--ccCCCEEEEEeccEEecC-CCCCC--CccceEEEEEEEEcCCChHhhH---HHHHHHH-HHHHHcC-
Confidence 99999987532 357899999999999999 88888 9999999999999998754311 1222222 3444432
Q ss_pred cCCC-CceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhh-hhccCccccccccCccchhhhccCCceeee
Q psy17941 329 MDGK-PAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRF-RQHMGNEMAHYACDCWDAECLTSYGWVECV 406 (679)
Q Consensus 329 ~~g~-~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~-r~~~~~e~~~ya~~~~d~e~~~~~g~~e~~ 406 (679)
-. ....+.+++. .....++..+|++.+.... ...+. . +...+|.+
T Consensus 178 --l~~~~~~i~in~~---------------~il~~~l~~~g~~~~~~~~v~~~id-k-------------l~~~~~~~-- 224 (456)
T 3lc0_A 178 --LSSKDVGIKVNSR---------------KVLQTVVEQAGVTSDKFAPVCVIVD-K-------------MEKIPREE-- 224 (456)
T ss_dssp --CCTTTEEEEEEEH---------------HHHHHHHHHTTCCGGGHHHHHHHHT-T-------------TTTSCHHH--
T ss_pred --CCCCceEEEEcCH---------------HHHHHHHHHcCCCHHHHHHHHHHHH-H-------------hcccCHHH--
Confidence 11 1224444431 1234455667776543221 00000 0 00011100
Q ss_pred eccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhcCHhHHHHHHHhhh---c
Q psy17941 407 GCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLN---T 483 (679)
Q Consensus 407 ~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~~~~~~~~~~l~---~ 483 (679)
+.......+.+-...+++ . .. ++ .++++.+.++|+..++ .++.++..++ .
T Consensus 225 ---------~~~~L~~~~l~~~~~~~l-----~---~~-~~--------~~~~~~l~~~l~~~~~-~~~~L~~l~~~l~~ 277 (456)
T 3lc0_A 225 ---------VEAQLAVLGLEPTVVDAI-----T---TT-LS--------LKSIDEIAQRVGEEHE-AVKELRQFFEQVEA 277 (456)
T ss_dssp ---------HHHHHHHTTCCHHHHHHH-----H---HH-HT--------CCSHHHHHHHHCTTCH-HHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHcCCCHHHHHHH-----H---HH-hc--------cCCHHHHHHHHhHHHH-HHHHHHHHHHHHHH
Confidence 000000000000000000 0 00 00 0134556666654332 2555554432 2
Q ss_pred CCcEEEeecCceeeeccceeE-Eeeeecccc--------------eeEe------------ccceeeccccHHHHHHHHH
Q psy17941 484 NGKYELLVDDKEFVLTKDMIS-IKKSTKTFH--------------VEEI------------IPSVIEPSFGIGRIMYALF 536 (679)
Q Consensus 484 ~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~--------------~~~~------------~P~vi~~s~GIeRll~al~ 536 (679)
.| + ...|.+++.+++ ++|||..++ |++| +|+| |+|+|+|||+.+|.
T Consensus 278 ~g-----i-~~~~~~D~~lvRgldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~~~Pav-GFaig~eRl~~~l~ 350 (456)
T 3lc0_A 278 YG-----Y-GDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTPIPCA-GFGFGDCVIVELLQ 350 (456)
T ss_dssp HT-----C-GGGEEECTTCCCSCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSSCCCEE-EEEEESSHHHHHHH
T ss_pred cC-----C-CceEEEecCccCCccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCCCCCEE-EEEeEHHHHHHHHH
Confidence 21 1 124788888998 899988775 4566 3555 89999999998876
Q ss_pred HhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEE
Q psy17941 537 EHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFG 616 (679)
Q Consensus 537 e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~ 616 (679)
+.+ ..|....+.+|+|++.+++ ....+.++++.||++|++|+++..+.++++|+++|++.|+||+
T Consensus 351 ~~~-------------~~~~~~~~~~v~v~~~~~~--~~~~a~~la~~LR~~Gi~ve~~~~~~slkkq~k~A~k~ga~~v 415 (456)
T 3lc0_A 351 EKR-------------LLPDIPHVVDDVVIPFDES--MRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVGAVRA 415 (456)
T ss_dssp HTT-------------CCCCCCCCEEEEEEESSGG--GHHHHHHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHTTEEEE
T ss_pred hcC-------------CCCccCCCCcEEEEEcCHH--HHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHcCCCEE
Confidence 532 1232223568899988753 6789999999999999999999888999999999999999999
Q ss_pred EEEeCCCCCCCCeEEEEECCCCceEEEehHHH
Q psy17941 617 ITIDFDTLKEPHSVTLRERDSMTQVRVKVNEV 648 (679)
Q Consensus 617 IiVG~~El~~~g~Vtlr~r~t~~q~~v~i~el 648 (679)
||||++|+ ++|+|+||||.|++|..+++++.
T Consensus 416 viiGe~E~-~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 416 VLVAPEEW-ERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp EEECHHHH-HTTEEEEEECC------------
T ss_pred EEECCchh-cCCeEEEEECCCCCeEEeccccc
Confidence 99999999 79999999999999999988764
No 33
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=100.00 E-value=7.3e-37 Score=343.85 Aligned_cols=253 Identities=16% Similarity=0.166 Sum_probs=199.7
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHhh---------c-----CCCCCCCChHHHHHH-HHHhc----cc---cchhhh-----
Q psy17941 34 ELDVKKAVAELKLRKKVLDERELK---------L-----APFVSSFDRAKMEDL-LKRRF----FY---DQSFSI----- 86 (679)
Q Consensus 34 ~~~i~~~v~~l~~~~~~le~~~~~---------~-----~~~~~~~~~~~~~~l-~~r~~----f~---~~~~ei----- 86 (679)
..++.++++.+++++++++++..+ + .-+++|+| ++.++. +++.| |. .+|.+|
T Consensus 175 Y~~l~~eV~pLk~eLk~lE~eL~e~e~eL~~lll~ipN~~~~~vp~g-~e~~n~~~~~~g~~~~~~~~~~dH~~lg~~l~ 253 (536)
T 3err_A 175 YADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVG-GEEANREIKRVGGPPEFSFPPLDHVALMEKNG 253 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCS-SGGGCEEEEEESCCCCCSSCCCCHHHHHHHHT
T ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-CCCCCeEEEEeCCCCCCCCCCCCHHHHHHHcC
Confidence 345666677777666666655222 1 22578877 554443 33333 21 234333
Q ss_pred -cC------CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccc
Q psy17941 87 -YG------GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFR 159 (679)
Q Consensus 87 -~~------~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r 159 (679)
+. +++|+|.|+|.|++|.++|+++|++.+ .+.||+||.+|.|.+.++|++||||++|.++||+.... +
T Consensus 254 l~d~~~~k~~G~g~~~~~p~Ga~l~~aL~~~~~~~~-~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~~-~--- 328 (536)
T 3err_A 254 WWEPRISQVSGSRSYALKGDLALYELALLRFAMDFM-ARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAET-D--- 328 (536)
T ss_dssp CBCTTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETTT-T---
T ss_pred CcccccccCCCCceeEEcCHHHHHHHHHHHHHHHHH-HHcCCEEEeccccccHHHHHhcCCcccChhhceEecCC-C---
Confidence 11 268999999999999999999999999 78999999999999999999999999999999985431 1
Q ss_pred hhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcc
Q psy17941 160 LDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIK 239 (679)
Q Consensus 160 ~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~ 239 (679)
++|.||+|+.++.+.+..+.|
T Consensus 329 -------------------------------~~L~PT~E~~~~~l~~~~i~s---------------------------- 349 (536)
T 3err_A 329 -------------------------------LYLTGTAEVVLNALHSGEILP---------------------------- 349 (536)
T ss_dssp -------------------------------EEECSSTHHHHHHHTTTCEEE----------------------------
T ss_pred -------------------------------EEEccCCcHHHHHHHhccccc----------------------------
Confidence 589999999999988877665
Q ss_pred cccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCC----CCCCcccccceeEeeEEEEeCCC--cchhhhHHH
Q psy17941 240 GYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEIS----PRSGLIRVREFTMAEIEHFCDPT--DKSHAKFSD 313 (679)
Q Consensus 240 ~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~----pr~Gl~R~REF~q~e~~~F~~~~--~~~~~~~~~ 313 (679)
| ++||+++||+|+|||+|++ +++||+|+|||+|+|+|+||.|+ ++. ..
T Consensus 350 -~---------------------~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~-~~--- 403 (536)
T 3err_A 350 -Y---------------------EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASD-RA--- 403 (536)
T ss_dssp -G---------------------GGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHH-HH---
T ss_pred -H---------------------hhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHH-HH---
Confidence 5 8999999999999999994 57999999999999999999998 432 22
Q ss_pred HHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccc
Q psy17941 314 VETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWD 393 (679)
Q Consensus 314 v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d 393 (679)
+..++...+.++..+|+++..+. .++++|++++..+||
T Consensus 404 ---------------------------------------~e~~~~~~~~i~~~LgLpyrvv~---~~tgdlg~~a~~~yD 441 (536)
T 3err_A 404 ---------------------------------------FQELLENAEEILRLLELPYRLVE---VATGDMGPGKWRQVD 441 (536)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHTTCCEEEEE---CCTTTSCTTCSEEEE
T ss_pred ---------------------------------------HHHHHHHHHHHHHHcCCcEEEEE---cCCcccCCChhheee
Confidence 22245556778889999977654 467899999999999
Q ss_pred hhhhccC--CceeeeeccccchhhHhHH
Q psy17941 394 AECLTSY--GWVECVGCADRSAYDLTQH 419 (679)
Q Consensus 394 ~e~~~~~--g~~e~~~~~~r~~~dl~~~ 419 (679)
+|+|+|. ||.|+++|++++||+.+.+
T Consensus 442 iE~w~p~~~~~~Ei~s~sn~~dyqarr~ 469 (536)
T 3err_A 442 IEVYLPSEGRYRETHSCSALLDWQARRA 469 (536)
T ss_dssp EEEEEGGGTEEEEEEEEEEEETHHHHHH
T ss_pred eeEecCCCCCeEEEEEecCccChhhccc
Confidence 9999986 7999999999999998865
No 34
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=100.00 E-value=7.8e-37 Score=341.49 Aligned_cols=250 Identities=14% Similarity=0.094 Sum_probs=183.0
Q ss_pred CCCCCCCChHHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc
Q psy17941 59 APFVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS 138 (679)
Q Consensus 59 ~~~~~~~~~~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S 138 (679)
.+.+.+++. ...++|+++||+++. +++|+|+|+|.|++|+++|+++|++++..+.||+||.+|+|++.++|++|
T Consensus 195 t~re~~f~~-~~~~ll~raG~i~~~-----~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~S 268 (522)
T 2cja_A 195 EPMEHPFKE-DPTQAMMKEGWLKRG-----SSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKS 268 (522)
T ss_dssp CCCCCCCCS-CHHHHHHHTTSEEEC-----SSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHH
T ss_pred cccCCCcch-HHHHHHHHCCCeeee-----CCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhc
Confidence 334555643 445789999999874 48999999999999999999999987338999999999999999999999
Q ss_pred CCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCC
Q psy17941 139 GHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDL 218 (679)
Q Consensus 139 Gh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~ 218 (679)
|||+.|+++||++..++ .|.|++.++.+.... .+++.|++++
T Consensus 269 Gh~~~F~demy~v~~~~--~Rd~~~~e~~~~~~~------------------------------------~~~~~~~~~~ 310 (522)
T 2cja_A 269 GHAKGVYPEIYYVCPPQ--TRDPDYWEEVADYYK------------------------------------VTHEVPTKLI 310 (522)
T ss_dssp TGGGTCGGGCCEEECBS--CCCHHHHHHHHHHHH------------------------------------HHSSCCHHHH
T ss_pred CCcCccccceeeeecCC--ccchhhhhhhhhhhh------------------------------------cccccccccc
Confidence 99999999999976433 134666655432210 0111111111
Q ss_pred CCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeec-ccccccCCCCCCCCcccccceeEeeE
Q psy17941 219 SEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQ-IGNAFRNEISPRSGLIRVREFTMAEI 297 (679)
Q Consensus 219 ~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~q-ig~~FR~E~~pr~Gl~R~REF~q~e~ 297 (679)
+.+ .++...||||+++++++.+|++.+... ++||+++|| +|+|||||.++++||+|+|||+|+|+
T Consensus 311 ~~~-------------~~~~~l~LrPt~e~~i~~~f~~~i~s~-~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~ 376 (522)
T 2cja_A 311 KEK-------------IAEPIGGMCYAQCPPFWMYVAGETLPN-EEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEI 376 (522)
T ss_dssp HHH-------------BCCCCEEECSSSSGGGGGGTTTCEECG-GGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEE
T ss_pred ccc-------------cCCCcEEEccCCcHHHHHHHHhccccc-ccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeE
Confidence 111 124567999999999999998654333 789999999 99999999555599999999999999
Q ss_pred EEEeCCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHH-HHHHHHHHHcCCCccchhh
Q psy17941 298 EHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFM-ARIQKFMISVGIDPEKLRF 376 (679)
Q Consensus 298 ~~F~~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~-~~~~~~l~~~g~~~~~~~~ 376 (679)
|+||+|++... ++.+|+ +....++..+|++ . ++
T Consensus 377 ~~F~~pe~s~e-------------------------------------------e~ee~i~~~~~~~l~~LGLp-~-v~- 410 (522)
T 2cja_A 377 VWIGTKEEVLK-------------------------------------------CAEELHDRYMHIFNDILDIE-W-RK- 410 (522)
T ss_dssp EEEEEHHHHHH-------------------------------------------HHHHHHHHHHHHHHHTSCCC-E-EE-
T ss_pred EEEeChHHHHH-------------------------------------------HHHHHHHHHHHHHHHHcCCC-E-Ee-
Confidence 99999875421 123355 5667788899998 3 33
Q ss_pred hhccCcccccc-------------ccCccchhhhccC--C---ceeeeeccccchhhH
Q psy17941 377 RQHMGNEMAHY-------------ACDCWDAECLTSY--G---WVECVGCADRSAYDL 416 (679)
Q Consensus 377 r~~~~~e~~~y-------------a~~~~d~e~~~~~--g---~~e~~~~~~r~~~dl 416 (679)
..++ ++| +..++|+|+|+|+ | |+||.+|++.++|+.
T Consensus 411 ---~~~D-~f~~a~~G~~G~~q~~a~~k~DiE~~~P~~~g~~~~~eisS~s~~~d~qa 464 (522)
T 2cja_A 411 ---ARVT-PWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYP 464 (522)
T ss_dssp ---EEC-----------------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHHH
T ss_pred ---eccC-CccccccccccchhccccceEEEEEecccccCCCcEEEEeeechhhhhcc
Confidence 2222 555 6788999999995 3 567777777666643
No 35
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.96 E-value=2.1e-28 Score=267.75 Aligned_cols=349 Identities=15% Similarity=0.097 Sum_probs=208.0
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLE 169 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~ 169 (679)
++|++||+|.++++++.|++.|++.| .++||.||.||+|++.++|.++| +.+.++||+....
T Consensus 13 p~G~~d~lP~~~~~~~~i~~~l~~~~-~~~Gy~eI~tP~lE~~el~~~~g--~~~~~~my~f~D~--------------- 74 (400)
T 3od1_A 13 PFGMRDTLPEWYKTKKNICDQMTEEI-NLWGYDMIETPTLEYYETVGVVS--AILDQQLFKLLDQ--------------- 74 (400)
T ss_dssp CTTCCCBCHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEETTTHHHHS--SSCGGGSCEEECT---------------
T ss_pred CCcchhcCHHHHHHHHHHHHHHHHHH-HHcCCEEEeCCccccHHHHhhcC--CccccceEEEECC---------------
Confidence 79999999999999999999999999 99999999999999999999887 4566777763211
Q ss_pred HhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhh
Q psy17941 170 KLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQG 249 (679)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqg 249 (679)
+++...||||.|.+
T Consensus 75 ------------------------------------------------------------------~g~~l~LRpd~T~~ 88 (400)
T 3od1_A 75 ------------------------------------------------------------------QGNTLVLRPDMTAP 88 (400)
T ss_dssp ------------------------------------------------------------------TSCEEEECSCSHHH
T ss_pred ------------------------------------------------------------------CCCEEEECCCCHHH
Confidence 22345899999999
Q ss_pred HHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHH----HHHHH
Q psy17941 250 IFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMM----VLYSA 325 (679)
Q Consensus 250 i~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~----~lf~~ 325 (679)
+.+.+.+.+ ..+.+|+++||+|++||+| +|+.| |+|||+|+++|+|+.++..+ |++++ .+|.+
T Consensus 89 ~aR~~~~~~--~~~~~P~r~~y~g~vfR~e-~~~~g--R~Ref~Q~g~ei~G~~~~~a--------DaEvi~l~~~~l~~ 155 (400)
T 3od1_A 89 IARLVASSL--KDRAYPLRLAYQSNVYRAQ-QNEGG--KPAEFEQLGVELIGDGTASA--------DGEVIALMIAALKR 155 (400)
T ss_dssp HHHHHHHHC--SSSCSCEEEEEEEEEECCC-C---C--CCSEEEEEEEEEESCCSHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHhhc--ccCCCCeEEEEEcCEEeCC-CCCCC--CCCccEEeEEEEECCCChHh--------HHHHHHHHHHHHHH
Confidence 999988653 2468999999999999999 88888 99999999999999876432 33331 33443
Q ss_pred hhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCcc-chhhhhccCccccccccCccchhhhccCCcee
Q psy17941 326 CNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPE-KLRFRQHMGNEMAHYACDCWDAECLTSYGWVE 404 (679)
Q Consensus 326 ~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~-~~~~r~~~~~e~~~ya~~~~d~e~~~~~g~~e 404 (679)
+ | -....+.+++.+ ....++..+|+++. +-.++..+.. .|.. +|.+
T Consensus 156 l---g-l~~~~i~l~~~~---------------i~~~ll~~~~~~~~~~~~l~~~l~~---------~~~~-----~~~~ 202 (400)
T 3od1_A 156 A---G-LSEFKVAIGHVG---------------YVNALLMDVVGNEQRADRLRRFLYE---------KNYV-----GYRE 202 (400)
T ss_dssp T---T-CCSEEEEEEEHH---------------HHHHHHHHHHCCHHHHHHHHHHHHT---------TCHH-----HHHH
T ss_pred C---C-CCceEEEecCHH---------------HHHHHHHHcCCCHHHHHHHHHHHHh---------cChh-----HHHH
Confidence 3 2 122234444321 11223344444433 1111111100 0000 0000
Q ss_pred eeeccccchhhHhHH--HHHhCCcccccccCCCCccceeecccCcccccCc-cccchhhHHH-HHhhhcCHhHHHHHHHh
Q psy17941 405 CVGCADRSAYDLTQH--FKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGK-EFKKDAKTIC-DALAALDLNSVSAVEES 480 (679)
Q Consensus 405 ~~~~~~r~~~dl~~~--~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~-~~~~~~~~i~-d~L~~~~~~~~~~~~~~ 480 (679)
.. . ...++.. ......+. ..|. .....++.+. +.+...+-++++.+.+.
T Consensus 203 ~l---~--~~~l~~~~~~~l~~l~~----------------------~~g~~~~l~~~~~l~~~~~~~~~l~~l~~l~~~ 255 (400)
T 3od1_A 203 HV---K--SLNLSTIDKSRLMNLLS----------------------LRGGRAAIEEARGLIQTEKGKTALAEMTKLYEV 255 (400)
T ss_dssp HH---H--HSSSCHHHHHHHHHGGG----------------------CEESHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred HH---H--hcCCCHHHHHHHHHHHh----------------------ccCCHHHHHHHHhhhcChhhHHHHHHHHHHHHH
Confidence 00 0 0000000 00000000 0000 0000111110 00000011234444445
Q ss_pred hhcCCcEEEeecCceeeeccceeE-Eeeeecccc-------------eeEe----------ccceeeccccHHHHHHHHH
Q psy17941 481 LNTNGKYELLVDDKEFVLTKDMIS-IKKSTKTFH-------------VEEI----------IPSVIEPSFGIGRIMYALF 536 (679)
Q Consensus 481 l~~~g~~~~~~~g~~f~i~~~~v~-~~~y~~~~~-------------~~~~----------~P~vi~~s~GIeRll~al~ 536 (679)
|+..|. ...+.+++.+++ ++|||..++ |++| +|+| |+|+|++||+.+|.
T Consensus 256 L~~~gi------~~~~~~D~~lvRgldYYTG~vFe~~~~~~g~~i~~GGRYD~L~~~fG~~~pav-GfaiglerL~~~l~ 328 (400)
T 3od1_A 256 LESYGA------SEYVKFDLTLVLHMSYYTGVVFEGYGNRLGVPLCSGGRYDELLSKFHRPAQAT-GFGVRIDLLVEALN 328 (400)
T ss_dssp HHHTTC------GGGEEEETTCCSCSSSCCSEEEEEEETTCSSEEEEEEECTTHHHHTTCCCCEE-EEEEEHHHHHHHHC
T ss_pred HHHcCC------CceEEEeCCccCCCcccCCeEEEEEECCCCCeeecccccchhhhccCCCCCEE-EEEeeHHHHHHHHH
Confidence 543321 224778888888 789988875 5677 6777 79999999997764
Q ss_pred HhccccCCCccccccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEE
Q psy17941 537 EHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFG 616 (679)
Q Consensus 537 e~~~~~~~~~~~r~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~ 616 (679)
+.. ..++ .| +|+|+ .+. +....+.++++.||++|++|+++..+.. ... +|...|+..+
T Consensus 329 ~~~-------------~~~~--~~-~v~v~-~~~--~~~~~a~~~a~~LR~~G~~v~~~~~~~~-~~~--~~~~~~~~~~ 386 (400)
T 3od1_A 329 GEI-------------ISNG--HE-QTCIL-FSN--ERRFEAIELARKKRANGEAVVLQDLAGV-TDV--DAMSSNYQDV 386 (400)
T ss_dssp C---------------------CC-CEEEE-ECG--GGHHHHHHHHHHHHTTTCCEEEEEGGGC-SCH--HHHHTTSSEE
T ss_pred hcC-------------CCCC--CC-eEEEE-ECc--HHHHHHHHHHHHHHHCCCEEEEEecCCh-hHH--HHHHcCCCEE
Confidence 321 1121 12 25544 443 3678899999999999999999854322 111 7778899999
Q ss_pred EEEeCCCC
Q psy17941 617 ITIDFDTL 624 (679)
Q Consensus 617 IiVG~~El 624 (679)
+.+...+-
T Consensus 387 ~~~~~~~~ 394 (400)
T 3od1_A 387 IYCIGTAG 394 (400)
T ss_dssp EEECSCC-
T ss_pred EEEecCCC
Confidence 99987654
No 36
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.93 E-value=2.9e-26 Score=241.43 Aligned_cols=217 Identities=15% Similarity=0.064 Sum_probs=158.7
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCC-CCcccchhhhHHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLK-TGECFRLDHLIKAH 167 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~-~~~~~r~d~l~~~~ 167 (679)
|++|+|.|.+.|.+|++.|+++|++ . ...||.||.+|.|.+.++|++||||++|.++||.... +++ +.-..+.
T Consensus 52 g~~g~y~~~g~~a~L~~aLe~~~~~-~-~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d----~~e~~~l 125 (346)
T 3mf2_A 52 GSDGVYARTALYESIVERLAALITS-H-REAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGT----EREINAA 125 (346)
T ss_dssp EETTEEEEEHHHHHHHHHHHHHHHH-T-CCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSC----HHHHHHH
T ss_pred CCCceEEecchHHHHHHHHHHHHHh-h-HhcCCeEEECCCccCHHHHHhcCCcccChhhcceeeccccc----chhhhhh
Confidence 5799999999999999999999999 8 7889999999999999999999999999999998422 111 0111111
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcC-CCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccc
Q psy17941 168 LEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYN-IKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPET 246 (679)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~-i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~ 246 (679)
+..+-...+...+.++ ..++|.||.|..++.+.+.+ +.+
T Consensus 126 l~~~~~~~~~~~~l~~-----~d~~LiPtacvpl~~~~~~eg~i~----------------------------------- 165 (346)
T 3mf2_A 126 VSRFDAGGDWTTSLSP-----ADLVLSPAACYPVYPIAASRGPLP----------------------------------- 165 (346)
T ss_dssp HHHHHTTSCGGGGEEE-----EEEEECSSSSTTHHHHHHTTCSCC-----------------------------------
T ss_pred hhhhccccccccccCC-----CCEEEcccccHHHHHHHccCCccc-----------------------------------
Confidence 2111111111111111 02456666666665555542 322
Q ss_pred hhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHHHHHHHh
Q psy17941 247 AQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSAC 326 (679)
Q Consensus 247 aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~~lf~~~ 326 (679)
+.|++++.+|+|||+|.+ .||+|+|||+|.|+++||+|+++..
T Consensus 166 -----------------~~plr~~~~g~CFR~EaS--~GL~RvhqF~kvE~v~~~tpEqs~~------------------ 208 (346)
T 3mf2_A 166 -----------------KGGLRFDVAADCFRREPS--KHLDRLQSFRMREYVCIGTPDDVSD------------------ 208 (346)
T ss_dssp -----------------TTCEEEEEEEEEECCCCC--SSTTSCSEEEEEEEEEEESHHHHHH------------------
T ss_pred -----------------ccCeEEEEECCccCCcCC--CCCeeeeeeEEEEEEEEeCHHHHHH------------------
Confidence 338999999999999973 6999999999999999999987642
Q ss_pred hccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCcccccc------------ccCccch
Q psy17941 327 NQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHY------------ACDCWDA 394 (679)
Q Consensus 327 ~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~y------------a~~~~d~ 394 (679)
.+..+++.++.++..+|+++..+. .++|.+. +..+||+
T Consensus 209 -------------------------e~e~l~~~ae~il~~LgLpyrv~~-----~~D~~f~~~G~l~~~~Q~~~~~kyDl 258 (346)
T 3mf2_A 209 -------------------------FRERWMVRAQAIARDLGLTFRVDY-----ASDPFFGRVGQMKAVSQKQQQLKFEL 258 (346)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCCCEEEE-----CCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred -------------------------HHHHHHHHHHHHHHHCCCCEEEEE-----ccCCCcCcccchhhhccccccceEEE
Confidence 133367788899999999876442 2454443 3568999
Q ss_pred hhhccC--CceeeeeccccchhhHhH
Q psy17941 395 ECLTSY--GWVECVGCADRSAYDLTQ 418 (679)
Q Consensus 395 e~~~~~--g~~e~~~~~~r~~~dl~~ 418 (679)
|+|.|. .|+||++|++.+||+.+.
T Consensus 259 evw~p~~~~y~EisS~Sn~~dfqarR 284 (346)
T 3mf2_A 259 LIPLRSEEQPTACMSFNYHREHFGTT 284 (346)
T ss_dssp EECSSCSSSCEEEEEEEECTTHHHHH
T ss_pred EEEcCCCCCeeEEEeeecccchhhhh
Confidence 999884 599999999999998764
No 37
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.93 E-value=5.5e-26 Score=244.12 Aligned_cols=128 Identities=16% Similarity=0.093 Sum_probs=107.2
Q ss_pred CCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhc--CCcccccCCceeeCCCCcccchhhhHHH
Q psy17941 89 GISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKAS--GHVDRFADLMVKDLKTGECFRLDHLIKA 166 (679)
Q Consensus 89 ~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~S--Gh~~~f~d~m~~d~~~~~~~r~d~l~~~ 166 (679)
.++|++||+|.+++++++|++.|++.| .++||+||.||+|++.++|++| ||++.+.++||+....
T Consensus 24 ~~~G~~d~lP~~~~~~~~i~~~i~~~~-~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~------------ 90 (344)
T 1z7m_A 24 LPEESAEMTLNQVKSLRQIEGRLRKLF-SLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKH------------ 90 (344)
T ss_dssp CCTTCCCCCHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECT------------
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHH-HHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECC------------
Confidence 379999999999999999999999999 9999999999999999999987 9999888888873221
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccc
Q psy17941 167 HLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPET 246 (679)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~ 246 (679)
+++...||||+
T Consensus 91 ---------------------------------------------------------------------~g~~l~LRpd~ 101 (344)
T 1z7m_A 91 ---------------------------------------------------------------------EGQSITLRYDF 101 (344)
T ss_dssp ---------------------------------------------------------------------TCCEEEECCCS
T ss_pred ---------------------------------------------------------------------CCCEEecCCCC
Confidence 12345899999
Q ss_pred hhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCc
Q psy17941 247 AQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTD 305 (679)
Q Consensus 247 aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~ 305 (679)
|.++.+.+... ...+|+++||+|++||+| +|+.| |+|||+|+++|+|+.++.
T Consensus 102 T~~~aR~~~~~----~~~~P~rl~y~g~vfR~e-~p~~g--R~REF~Q~g~ei~g~~~~ 153 (344)
T 1z7m_A 102 TLPLVRLYSQI----KDSTSARYSYFGKIFRKE-KRHKG--RSTENYQIGIELFGESAD 153 (344)
T ss_dssp HHHHHHHHHTC----CSCCCEEEEEEEECCCCC-C---------CCEEEEEEEESSCHH
T ss_pred cHHHHHHHHhc----CCCCCeEEEEECcEEccC-CCCCC--CcceeEEEEEEEEcCCCc
Confidence 99999998865 467999999999999999 99888 999999999999998654
No 38
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.88 E-value=5e-23 Score=223.28 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=104.9
Q ss_pred CCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCccccc-CCceeeCCCCcccchhhhHHHHH
Q psy17941 90 ISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFA-DLMVKDLKTGECFRLDHLIKAHL 168 (679)
Q Consensus 90 ~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~-d~m~~d~~~~~~~r~d~l~~~~~ 168 (679)
++|++||+|.++++++.|++.|++.| .++||.||.||+|++.++|.+||+ .+. ++||+....
T Consensus 26 p~G~~d~lP~~~~~~~~i~~~i~~~f-~~~Gy~eI~tP~le~~el~~~~g~--~~~~~~my~~~D~-------------- 88 (373)
T 3rac_A 26 PPGMQDGYPDFAKRRRAVETRLLSFV-EDAGYEPVTSGLFEYVDTLLRARS--PESSRDWIRLFDG-------------- 88 (373)
T ss_dssp CTTCCCCCTTHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEHHHHHTTSC--TTSCCCCCBCCCC--------------
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHH-HHcCCeEEECCceeeHHHHhhcCC--ccchhceEEEECC--------------
Confidence 79999999999999999999999999 999999999999999999999873 455 677653211
Q ss_pred HHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchh
Q psy17941 169 EKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQ 248 (679)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aq 248 (679)
+++...||||.|.
T Consensus 89 -------------------------------------------------------------------~g~~l~LRpd~T~ 101 (373)
T 3rac_A 89 -------------------------------------------------------------------GGDAVALRPEMTP 101 (373)
T ss_dssp -------------------------------------------------------------------SSSCEEECSSSHH
T ss_pred -------------------------------------------------------------------CCCEEEECCcCHH
Confidence 2334589999999
Q ss_pred hHHHHHHHhhhhccCCCCeeeecccccccCCCCC------CCCcccccceeEeeEEEEeCCCc
Q psy17941 249 GIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP------RSGLIRVREFTMAEIEHFCDPTD 305 (679)
Q Consensus 249 gi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p------r~Gl~R~REF~q~e~~~F~~~~~ 305 (679)
++.+.+.+.+. .+.+|+++||+|++||+| +| +.| |+|||+|+++|+|+.+++
T Consensus 102 ~~aR~~~~~~~--~~~~P~r~~y~g~vfR~e-~~g~~~~~~~g--R~ReF~Q~g~ei~g~~d~ 159 (373)
T 3rac_A 102 SIARMAAPRVA--AGRTPIRWCYCERVYRRT-DDPASLSWASG--KAAESTQVGIERIGEEAS 159 (373)
T ss_dssp HHHHHHHHHHH--TTCCCCEEEEEEEEEECC---------------CEEEEEEEEEECSSCCC
T ss_pred HHHHHHHhccc--cCCCCeEEEEEcceEccC-CCcccccccCC--ccceeEEeeeEEECCCCC
Confidence 99999987542 368999999999999999 56 566 999999999999999843
No 39
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.62 E-value=2.9e-16 Score=163.50 Aligned_cols=97 Identities=6% Similarity=-0.077 Sum_probs=78.1
Q ss_pred HHHHHHH--HHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhh
Q psy17941 106 NMLSAWR--QFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKE 183 (679)
Q Consensus 106 ~i~~~~r--~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~ 183 (679)
.|+++|| +.| .++||.||.||+|++.++|.+ | +|.|..
T Consensus 5 ~le~~~r~~~~~-~~~Gy~eI~tP~le~~~l~~~--------d-~f~d~~------------------------------ 44 (275)
T 1usy_A 5 DFEKVFSFYSKA-TKKGFSPFFVPALEKAEEPAG--------N-FFLDRK------------------------------ 44 (275)
T ss_dssp CHHHHHHHHHHH-HHTTCEECCCCSEEECSSCCS--------S-CEEETT------------------------------
T ss_pred hHHHHHHHHHHH-HHCCCEEecCccccchhhhcc--------c-ccCCCC------------------------------
Confidence 5788888 999 999999999999999999976 2 554432
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccC
Q psy17941 184 ECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSG 263 (679)
Q Consensus 184 ~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~ 263 (679)
++...||||.|.++. ...+ ..+
T Consensus 45 -----------------------------------------------------g~~l~LRpd~T~~~a---~~~~--~~~ 66 (275)
T 1usy_A 45 -----------------------------------------------------GNLFSIREDFTKTVL---NHRK--RYS 66 (275)
T ss_dssp -----------------------------------------------------SCEEEECCCHHHHHH---HHHT--TCT
T ss_pred -----------------------------------------------------CCEEEeCCcChHHHH---HHHh--hcC
Confidence 123589999999999 3222 234
Q ss_pred C-CCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcc
Q psy17941 264 R-LPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDK 306 (679)
Q Consensus 264 ~-LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~ 306 (679)
. +|+++|++|+|||+| +|+. |||+|+++|+|+.+++.
T Consensus 67 ~~~p~R~~y~g~vfR~e-~~~~-----Ref~Q~g~ei~g~~~~~ 104 (275)
T 1usy_A 67 PDSQIKVWYADFVYRYS-GSDL-----VAEYQLGLEKVPRNSLD 104 (275)
T ss_dssp TCCCEEEECCEEEEEEE-TTEE-----EEEEEEEEEEESCCSHH
T ss_pred CCCceEEEEeceEEecC-CCCC-----CeeeEeCEEEecCCCch
Confidence 6 899999999999999 5544 99999999999988654
No 40
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.52 E-value=2.8e-14 Score=130.63 Aligned_cols=96 Identities=10% Similarity=0.117 Sum_probs=89.4
Q ss_pred CCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCC--CCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCeEEEEECC
Q psy17941 559 APLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDS--GGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERD 636 (679)
Q Consensus 559 aP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~--~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~Vtlr~r~ 636 (679)
-|.||.|+|+++. ..+||.+|++.|+..|++|++|++ +.+||++++.|...++||+||||++|. ++|+|+||.|.
T Consensus 7 ~P~Qv~IlpVs~~--~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~kE~-e~~sVsVR~r~ 83 (130)
T 1v95_A 7 GPVDCSVIVVNKQ--TKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQ-IHRSCTVNIMF 83 (130)
T ss_dssp CCCTEEEEESSSG--GGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHH-HHTEEEEEECS
T ss_pred CCCeEEEEEeCcc--hHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEechHH-hcCeeEEEecC
Confidence 5899999999854 889999999999999999999997 899999999999999999999999999 89999999998
Q ss_pred C--CceEEEehHHHHHHHHHHHh
Q psy17941 637 S--MTQVRVKVNEVASVIKDLSL 657 (679)
Q Consensus 637 t--~~q~~v~i~el~~~l~~l~~ 657 (679)
. +++..+++++++..|...+.
T Consensus 84 ~~~~e~~~m~lde~i~~l~~~~~ 106 (130)
T 1v95_A 84 GTPQEHRNMPQADAMVLVARNYE 106 (130)
T ss_dssp SSCCEEEEEEHHHHHHHHHHHHH
T ss_pred CCCCccCccCHHHHHHHHHHHHH
Confidence 7 78889999999999876654
No 41
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.35 E-value=5.7e-12 Score=131.80 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhh
Q psy17941 103 LKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVK 182 (679)
Q Consensus 103 l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~ 182 (679)
.++++++.+++.| ...||.||.||.|++.++|..+||++. ..|++...
T Consensus 72 ~~~~l~~~ir~~~-~~~Gf~EV~tP~Le~~~l~~~~g~~~~--~~m~~~~n----------------------------- 119 (288)
T 3dsq_A 72 ALLELEEKLAKAL-HQQGFVQVVTPTIITKSALAKMTIGED--HPLFSQVF----------------------------- 119 (288)
T ss_dssp HHHHHHHHHHHHH-HTTTCEECCCCSEEEHHHHHTTSSCC----CCTTTSC-----------------------------
T ss_pred HHHHHHHHHHHHH-HHCCCEEEECCeeecHHHHhhcCCCcc--cccEEeec-----------------------------
Confidence 4588999999999 899999999999999999999998752 12321100
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhcc
Q psy17941 183 EECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNS 262 (679)
Q Consensus 183 ~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~ 262 (679)
| .+ ...+|||.++.++...++.+. +.
T Consensus 120 -----------------------------p----------------------l~-e~~~LRp~l~p~l~~~~r~~~--~~ 145 (288)
T 3dsq_A 120 -----------------------------W----------------------LD-GKKCLRPMLAPNLYTLWRELE--RL 145 (288)
T ss_dssp -----------------------------E----------------------EE-TTEEECSCSHHHHHHHHHHHT--TT
T ss_pred -----------------------------c----------------------cc-cchhhhhcChHHHHHHHHHHH--hC
Confidence 0 01 124999999999886665543 23
Q ss_pred CCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCc
Q psy17941 263 GRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTD 305 (679)
Q Consensus 263 ~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~ 305 (679)
+++|++++++|+|||+| .+ |..|+|||+|.|++.|+.+++
T Consensus 146 ~~~PlrlfeiG~vFR~E-~~--~~~r~~EF~qle~~i~g~~~~ 185 (288)
T 3dsq_A 146 WDKPIRIFEIGTCYRKE-SQ--GAQHLNEFTMLNLTELGTPLE 185 (288)
T ss_dssp SCSCEEEEEEEEEECSC-CS--SSCCCSEEEEEEEEEETCCGG
T ss_pred CCCCEEEEEEeeEEecC-CC--CCCcCccEEEEEEEEEcCCch
Confidence 78999999999999999 44 344999999999999998744
No 42
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.01 E-value=4.3e-09 Score=110.30 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=33.8
Q ss_pred cchHHHHHHHHHHHHHHHhhhhCceEeecCcccch-hhhhh
Q psy17941 98 PMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLE-PVLKA 137 (679)
Q Consensus 98 P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~-~v~~~ 137 (679)
..-.+++.+|++.+|+.| .+.||.||+||+|++. +++..
T Consensus 12 ~~~~~~rs~i~~~ir~~f-~~~GF~EVeTP~l~~~~~~~~~ 51 (294)
T 1nnh_A 12 SPTLDIQTKILEYMTDFF-VKEGFKWLLPVIISPITDPLWP 51 (294)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEEECCCCEESCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHH-HHCCCEEEECCEEEEccchhcc
Confidence 345789999999999999 8999999999999998 55544
No 43
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=98.90 E-value=8.1e-09 Score=108.02 Aligned_cols=112 Identities=19% Similarity=0.291 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhh
Q psy17941 104 KTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKE 183 (679)
Q Consensus 104 ~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~ 183 (679)
++++.+.+|+.| ...||.||.||+|++.+.|...|.... ..+.
T Consensus 79 ~~~i~~~ir~~l-~~~Gf~EV~Tp~l~~~~~~~~~~~~~~--~p~~---------------------------------- 121 (290)
T 3qtc_A 79 LGKLEREITRFF-VDRGFLEIKSPILIPLEYIERMGIDND--TELS---------------------------------- 121 (290)
T ss_dssp HHHHHHHHHHHH-HHTTCEEECCCSEEETHHHHHTTCCTT--SSGG----------------------------------
T ss_pred HHHHHHHHHHHH-HHCCCEEEECCceeeHHHHHhcCCCcC--Cchh----------------------------------
Confidence 588999999999 899999999999999998877654321 0000
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCcccccCccchhhHHHHHHHhhhhccC
Q psy17941 184 ECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSG 263 (679)
Q Consensus 184 ~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~ 263 (679)
+++ +.|+ ...+|||..+.+++....+++ +..
T Consensus 122 --------------~~~---------------------~~~~------------~~~~LR~slsp~L~~~l~~n~--~~~ 152 (290)
T 3qtc_A 122 --------------KQI---------------------FRVD------------KNFCLRPMLTPNLYNYLRKLD--RAL 152 (290)
T ss_dssp --------------GGC---------------------CEET------------TTEEECSCSHHHHHHHHHHHT--TTS
T ss_pred --------------hhh---------------------eeeC------------CCeeEcccChHHHHHHHHHhh--ccC
Confidence 000 0000 135999999999997776543 235
Q ss_pred CCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCC
Q psy17941 264 RLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPT 304 (679)
Q Consensus 264 ~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~ 304 (679)
..|+++|++|+|||+| +++.+ |.+||+|.|++.++...
T Consensus 153 ~~p~rlfeiG~vFR~E-~~~~~--~~~Ef~ql~~~~~g~~~ 190 (290)
T 3qtc_A 153 PDPIKIFEIGPCYRKE-SDGKE--HLEEFTMLVFWQMGSGC 190 (290)
T ss_dssp CSSEEEEEEEEEECCC-SCSSS--CCSEEEEEEEEEESTTC
T ss_pred CCCeEEEEEcCEEecC-CCCCc--CcchheEEEEEEEcCCh
Confidence 7899999999999999 56555 89999999999998653
No 44
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.36 E-value=6.5e-07 Score=99.91 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 99 MGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 99 ~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
.-.+++..|.+.+|+.| ...||.||.||+|++..
T Consensus 176 ~~~~~rs~i~~~ir~~~-~~~gF~EV~TPil~~~~ 209 (487)
T 1eov_A 176 AIFRIQAGVCELFREYL-ATKKFTEVHTPKLLGAP 209 (487)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTCEECCCCSEESSC
T ss_pred HHHHHHHHHHHHHHHHH-HhCCcEEEeCCEEEEec
Confidence 35678999999999999 89999999999999853
No 45
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.18 E-value=2.5e-06 Score=93.53 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=20.1
Q ss_pred CeeeecccccccCCCCCCCCccccc-ceeEeeEEEEeC
Q psy17941 266 PFAAAQIGNAFRNEISPRSGLIRVR-EFTMAEIEHFCD 302 (679)
Q Consensus 266 P~~~~qig~~FR~E~~pr~Gl~R~R-EF~q~e~~~F~~ 302 (679)
+-++||||+|||+| .++.+ |-+ ||+|.|+|....
T Consensus 190 ~~rvf~ig~~FR~E-~~~~~--RH~pEFtqle~e~~~~ 224 (422)
T 1n9w_A 190 FERVYEVAPVWRME-EHHTS--RHLNEYLSLDVEMGFI 224 (422)
T ss_dssp HSEEEEEEEC----------------CCEEEEEEEESC
T ss_pred CCceeEEeCceECC-CCCCC--cccceeEEeeeeeeCC
Confidence 46999999999999 77777 888 999999999876
No 46
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.16 E-value=5e-06 Score=91.49 Aligned_cols=35 Identities=26% Similarity=0.192 Sum_probs=31.4
Q ss_pred CeeeecccccccCCCCCCCCccccc-ceeEeeEEEEeCC
Q psy17941 266 PFAAAQIGNAFRNEISPRSGLIRVR-EFTMAEIEHFCDP 303 (679)
Q Consensus 266 P~~~~qig~~FR~E~~pr~Gl~R~R-EF~q~e~~~F~~~ 303 (679)
|.++||||+|||+| .++.+ |-+ ||+|.|+|....+
T Consensus 200 ~~rvf~ig~~FR~E-~~~~~--RH~pEFtqle~e~~~~~ 235 (434)
T 1x54_A 200 LEKVWSLTPSFRAE-KSRTR--RHLTEFWHLELEAAWMD 235 (434)
T ss_dssp HSEEEEEEEEECCC-CCCCS--SCCSEEEEEEEEEETCC
T ss_pred ccceEEEecceecC-CCCCc--ccccEEEEeeEEEcCCC
Confidence 67999999999999 77777 888 9999999998764
No 47
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.15 E-value=6.7e-06 Score=90.32 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=31.2
Q ss_pred CeeeecccccccCCCCCCCCccccc-ceeEeeEEEEeCC
Q psy17941 266 PFAAAQIGNAFRNEISPRSGLIRVR-EFTMAEIEHFCDP 303 (679)
Q Consensus 266 P~~~~qig~~FR~E~~pr~Gl~R~R-EF~q~e~~~F~~~ 303 (679)
+-++||||+|||+| .++.+ |-+ ||+|.|+|....+
T Consensus 199 ~~rvf~ig~~FR~E-~~~~~--RH~pEFtqle~e~~~~~ 234 (429)
T 1wyd_A 199 VERVFEVAPAWRAE-ESDTP--FHLAEFISMDVEMAFAD 234 (429)
T ss_dssp HSEEEEEEEEECCC-CCCSS--SCCSEEEEEEEEEETCC
T ss_pred cCceEEEccccccc-CCccc--cccceeeEeeeeecCCC
Confidence 57999999999999 77777 888 9999999998764
No 48
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=97.96 E-value=2.9e-05 Score=86.71 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=29.7
Q ss_pred CeeeecccccccCCCCCCCCcccccceeEeeEEEEeCC
Q psy17941 266 PFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDP 303 (679)
Q Consensus 266 P~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~ 303 (679)
.-++||||+||||| .++.. |..||||.|+|....+
T Consensus 242 ~~rVyeig~~FR~E-~~~~r--H~pEFT~lE~e~af~d 276 (493)
T 3a74_A 242 LEKVYEIGRVFRNE-GISTR--HNPEFTMLELYEAYAD 276 (493)
T ss_dssp CCEEEEEEEEECCC-CCBTT--BCSEEEEEEEEEETCC
T ss_pred cCceEEECccccCC-CCCcc--cCCceeEEEEEecCCC
Confidence 45899999999999 56555 9999999999987654
No 49
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=97.82 E-value=7e-05 Score=83.74 Aligned_cols=34 Identities=29% Similarity=0.265 Sum_probs=28.3
Q ss_pred eeeecccccccCCCCCCCCcccccceeEeeEEEEeCC
Q psy17941 267 FAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDP 303 (679)
Q Consensus 267 ~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~ 303 (679)
=++||||+||||| .++.. |..||||.|+|....+
T Consensus 252 ~rVyeIg~~FR~E-~~~~r--H~pEFt~lE~e~af~d 285 (504)
T 1e1o_A 252 ERVFEINRNFRNE-GISVR--HNPEFTMMELYMAYAD 285 (504)
T ss_dssp CEEEEEEEEECCC-CCCC---CCSEEEEEEEEEESCC
T ss_pred CcEEEEcccccCC-CCCcc--ccCceeeeeeeecCCC
Confidence 4799999999999 55554 9999999999986654
No 50
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=97.71 E-value=4.4e-05 Score=81.47 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
-.+++..|.+.+|+.| ...||.||+||+|++..
T Consensus 35 ~lr~Rs~i~~~iR~ff-~~~gF~EVeTPiL~~~~ 67 (345)
T 3a5y_A 35 NLLKRAAIMAEIRRFF-ADRGVLEVETPCMSQAT 67 (345)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTCEECCCCSEESSC
T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEEECCEEEecC
Confidence 5678999999999999 89999999999999754
No 51
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=97.42 E-value=0.00017 Score=79.43 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 99 MGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 99 ~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
.-.+++.+|.+.+|+.| ...||.||+||+|+...
T Consensus 130 ~~~r~Rs~i~~~iR~ff-~~~gFlEVeTPiL~~s~ 163 (435)
T 2xgt_A 130 ALLRLRAAATRAMREHF-YNAGYVEVAPPTLVQTQ 163 (435)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTCEECCCCSEESCC
T ss_pred HHHHHHHHHHHHHHHHH-HHCCCEEEECCeEeecc
Confidence 35688999999999999 89999999999998764
No 52
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.40 E-value=0.0003 Score=80.17 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
-.+++.+|...+|+.| ...||.||+||+|+..
T Consensus 137 ~l~~Rs~i~~~iR~fl-~~~gFlEVeTPiL~~s 168 (585)
T 1c0a_A 137 RLKTRAKITSLVRRFM-DDHGFLDIETPMLTKA 168 (585)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTCEECCCCSSBCC
T ss_pred HHHHHHHHHHHHHHHH-HhCCcEEEeCCEEecC
Confidence 4678999999999999 8999999999999964
No 53
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.40 E-value=0.00031 Score=79.80 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
-.+++.+|.+.+|+.| ...||.||+||+|+..
T Consensus 143 ~l~~Rs~i~~~iR~fl-~~~gF~EVeTPiL~~s 174 (580)
T 1l0w_A 143 NLRLRHRVIKAIWDFL-DREGFVQVETPFLTKS 174 (580)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTCEECCCCSSBCC
T ss_pred HHHHHHHHHHHHHHHH-HhCCcEEEeCCEEecC
Confidence 4678999999999999 8999999999999964
No 54
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.30 E-value=0.00051 Score=78.21 Aligned_cols=32 Identities=13% Similarity=0.318 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHhh-hhCceEeecCcccch
Q psy17941 100 GCALKTNMLSAWRQFFVL-EEQMLEVDCSILTLE 132 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~-~~g~~ev~~P~l~~~ 132 (679)
-.+++.+|...+|+.| . +.||.||.||+|+..
T Consensus 147 ~lr~Rs~i~~~iR~f~-~~~~gF~EVeTPiL~~s 179 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYL-CNLHGFVDIETPTLFKR 179 (617)
T ss_dssp HHHHHHHHHHHHHHHH-HTTSCCEECCCCSSBCC
T ss_pred HHHHHHHHHHHHHHHH-HhcCCeEEEeCCeeccC
Confidence 3678999999999988 5 689999999999863
No 55
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.19 E-value=0.0029 Score=70.36 Aligned_cols=60 Identities=25% Similarity=0.186 Sum_probs=47.5
Q ss_pred cccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEe
Q psy17941 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFC 301 (679)
Q Consensus 238 ~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~ 301 (679)
....||+.|+.++++.+.++... .+..|++++++|+|||+| .+... ++++|+|.+....+
T Consensus 320 ~~~vLRThtsp~~lr~l~~N~~~-~~~~PiriFeiGrVFR~d-~~Dat--HlpeFhQlegl~~~ 379 (508)
T 3l4g_A 320 RKNLLRTHTTSASARALYRLAQK-KPFTPVKYFSIDRVFRNE-TLDAT--HLAEFHQIEGVVAD 379 (508)
T ss_dssp TBEEECCCTHHHHHHHHHHHHTS-SSCCCEEEEEEEEEECCS-CCCSS--SCSEEEEEEEEEEE
T ss_pred ccccccCCChHHHHHHHHHhhhh-cCCCCceEEEEccEEecC-CCCCC--cCCeEEEEEEEEEC
Confidence 46799999999999888765321 245799999999999999 44444 77899999997654
No 56
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.16 E-value=0.00053 Score=77.03 Aligned_cols=31 Identities=16% Similarity=0.426 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
.+++..|.+.+|+.| ...||.||.||+|++.
T Consensus 176 ~r~Rs~i~~~iR~f~-~~~gF~EVeTPiL~~~ 206 (521)
T 3bju_A 176 FIIRSKIITYIRSFL-DELGFLEIETPMMNII 206 (521)
T ss_dssp HHHHHHHHHHHHHHH-HHTTCEECCCCSEESS
T ss_pred HHHHHHHHHHHHHHH-HHCCCEEEeCceeecc
Confidence 457778999999999 8999999999999874
No 57
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=97.12 E-value=0.00045 Score=75.95 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
-.+++..|.+.+|+.| ...||.||.||+|++..
T Consensus 136 ~~~~Rs~i~~~iR~f~-~~~gF~EVeTPiL~~~~ 168 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFF-HENGFIEIHTPKIIATA 168 (438)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTCEECCCCSEESSC
T ss_pred HHHHHHHHHHHHHHHH-HHCCcEEEeCCEEecCC
Confidence 4678999999999999 89999999999998864
No 58
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.05 E-value=0.00088 Score=75.10 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhhhCceEeecCcccch
Q psy17941 101 CALKTNMLSAWRQFFVLEEQMLEVDCSILTLE 132 (679)
Q Consensus 101 ~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~ 132 (679)
.+++.+|...+|+.| ...||.||.||+|++.
T Consensus 204 fr~Rs~i~~~iR~ff-~~~gFlEVeTPiL~~~ 234 (529)
T 4ex5_A 204 FRARTKAIASIRKFM-GDADFMEVETPMLHPI 234 (529)
T ss_dssp HHHHHHHHHHHHHHH-HHTTCEECCCCSEESS
T ss_pred HHHHHHHHHHHHHHH-HHCCCEEEeCCeeecc
Confidence 467889999999999 8999999999999964
No 59
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=96.82 E-value=0.0077 Score=64.17 Aligned_cols=56 Identities=20% Similarity=0.104 Sum_probs=44.3
Q ss_pred cccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 238 ~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
....||+-|..+..+...+ +..|++++++|+|||+|-.... ...||+|.++...+.
T Consensus 171 ~~~vLRt~tsp~llr~l~~------~~~piriFEiGrVFR~d~~d~t---H~pEF~qlegl~~g~ 226 (350)
T 1b7y_A 171 GRLLLRTHTSPMQVRYMVA------HTPPFRIVVPGRVFRFEQTDAT---HEAVFHQLEGLVVGE 226 (350)
T ss_dssp SCEEECSSSTHHHHHHHHH------CCSSEEEEEEEEEECCCCCCSS---CCSEEEEEEEEEEET
T ss_pred ccceeeccchHHHHHHHHh------cCCCeeEEEeeeEEECCCCCCC---CCChhHEEEEEEECC
Confidence 4568999999999866654 4679999999999998731211 448999999999876
No 60
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=96.76 E-value=0.0024 Score=71.74 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
=.+++..|...+|+.| ...||.||.||+|++..
T Consensus 243 ~~r~Rs~i~~~iR~ff-~~~gF~EVeTPiL~~~~ 275 (548)
T 3i7f_A 243 IFRIQSACCGLFREFL-TSQKFVEIHTPKLIGCS 275 (548)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTCEECCCCSBC---
T ss_pred HHHHHHHHHHHHHHHH-HhCCCEEEeCCEEeccc
Confidence 3578899999999999 89999999999999864
No 61
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=96.61 E-value=0.0021 Score=71.03 Aligned_cols=33 Identities=9% Similarity=0.278 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCceEeecCcccchh
Q psy17941 100 GCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEP 133 (679)
Q Consensus 100 G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~ 133 (679)
-.+++..|...+|+.| ...||.||+||+|++..
T Consensus 155 ~lr~Rs~i~~~iR~ff-~~~gF~EVeTPiL~~s~ 187 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYY-HDNHFTEIQPPTIVKTQ 187 (456)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTCEECCCCSEEC--
T ss_pred HHHHHHHHHHHHHHHH-HhCCCEEEeCCeeecCC
Confidence 4678999999999999 89999999999997754
No 62
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=96.58 E-value=0.0035 Score=70.08 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=49.3
Q ss_pred ccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCC-CCCcccccceeEeeEEEEeCC
Q psy17941 239 KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISP-RSGLIRVREFTMAEIEHFCDP 303 (679)
Q Consensus 239 ~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~p-r~Gl~R~REF~q~e~~~F~~~ 303 (679)
...|||.++.|++...++++. .+..|++++++|++||+| ++ ..+ +.+||+|.++...+.+
T Consensus 180 ~svLRTsLlPgLL~~lr~N~~--r~~~pvrLFEIG~VFr~d-~~~d~t--h~~Ef~qLagli~G~~ 240 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIAD--KLPLPIKLFSIDRCFRRE-QGEDAT--RLYTYFSASCVLVDEE 240 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTTT--TSCSSEEEEEEEEEECCC-TTCSSS--CCSEEEEEEEEEECSS
T ss_pred ccccCccchhhHHHHHHHHHh--CCCCCeeEEEEeeEEecC-cccccc--ccceeeEEEEEEECCC
Confidence 578999999999988877643 357899999999999987 44 444 6699999999988763
No 63
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=96.56 E-value=0.0061 Score=47.55 Aligned_cols=45 Identities=42% Similarity=0.469 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHH
Q psy17941 11 APLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERE 55 (679)
Q Consensus 11 ~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~ 55 (679)
.+|++++.+|++.||.||..++++.+|..+|..|..++.+++...
T Consensus 3 ~~l~~~v~~qG~~VR~LKa~kA~k~~i~~aV~~Ll~lK~~~~~~t 47 (57)
T 1fyj_A 3 LVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKT 47 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999999999887653
No 64
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.0069 Score=50.45 Aligned_cols=53 Identities=36% Similarity=0.379 Sum_probs=47.6
Q ss_pred ChhHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHH
Q psy17941 3 DPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERE 55 (679)
Q Consensus 3 ~~~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~ 55 (679)
+.....++.+|++++.+|++.||.||.++++..+|..+|..|.+++++|+...
T Consensus 8 ~~~~~~~~~~l~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LKa~l~~~t 60 (79)
T 2djv_A 8 TTAKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAE 60 (79)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhccCcHhHhhHHHHHHHHHHHHHHHhc
Confidence 34566788999999999999999999999999999999999999999987764
No 65
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=96.30 E-value=0.0039 Score=48.98 Aligned_cols=42 Identities=38% Similarity=0.479 Sum_probs=37.9
Q ss_pred HHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHH
Q psy17941 13 LRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDER 54 (679)
Q Consensus 13 l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~ 54 (679)
|.+++++|++.||.||.+++++.+|.++|..|..++++++..
T Consensus 2 L~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LK~~~~~~ 43 (59)
T 1d2d_A 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEK 43 (59)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCSS
T ss_pred hHHHHHHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999998887654
No 66
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=95.77 E-value=0.034 Score=58.57 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=40.5
Q ss_pred ccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEe
Q psy17941 239 KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFC 301 (679)
Q Consensus 239 ~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~ 301 (679)
...||+-|..++.+...+ +..|++++++|+|||++. . -..+.+|+|.+..+-+
T Consensus 163 ~~vLRThtsp~~lr~l~~------~~~pirifeiGrVyR~d~-d---~th~p~fhqlegl~v~ 215 (327)
T 3pco_A 163 TRLLRTQTSGVQIRTMKA------QQPPIRIIAPGRVYRNDY-D---QTHTPMFHQMEGLIVD 215 (327)
T ss_dssp SCEECSCTHHHHHHHHTT------CCSSCCBCCEECCBCSCC-B---TTBCSBCCEEEEEEEE
T ss_pred CceecccCCHHHHHHHHh------CCCCeeEEeeccEEecCC-C---cccCCcccEEEEEEEC
Confidence 358999999998766643 467999999999999982 2 2245679999876643
No 67
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=95.54 E-value=0.054 Score=61.24 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=46.7
Q ss_pred ccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 239 KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 239 ~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
...|||-|..|++.+.+.++. .+..|++++.+|.+||++-.-.. ...+||+|.++-..+.
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~~--R~~~pvRLFEIGrVFR~D~~lDa--th~~Ef~qLeGlv~G~ 258 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLMN--KKPLPFKLFSIDRCFRREQKEDK--SHLMTYHSASCAIAGE 258 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHTT--TSCSCEEEEEEEEEECCCSCCCS--SCCSEEEEEEEEEECT
T ss_pred cCcccccchhhHHHHHHHHHh--cCCCCeEEEEEeeEEecCccccc--cCCCcceEEEEEEECC
Confidence 468999999999999887653 45789999999999998621011 1348999999988775
No 68
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=95.50 E-value=0.056 Score=61.18 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=46.7
Q ss_pred ccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 239 KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 239 ~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
...|||-|..|++.+.+.++. .+..|++++.+|.+||++-.-.. ...+||+|.++-..+.
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~~--R~~~pvRLFEIGrVFR~D~~lDa--th~~Ef~qLeGlv~G~ 258 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLMN--KKPLPFKLFSIDRCFRREQKEDK--SHLMTYHSASCAIAGE 258 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHTT--TSCSCEEEEEEEEEECCCSCCCS--SCCSEEEEEEEEEECT
T ss_pred cCcccccchhhHHHHHHHHHh--cCCCCeEEEEEeeEEecCccccc--cCCCcceEEEEEEECC
Confidence 468999999999999887653 45789999999999998621011 1348999999988775
No 69
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=95.25 E-value=0.077 Score=60.18 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=46.7
Q ss_pred ccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 239 KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 239 ~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
...|||-|..|++.+.+.++. .+..|++++.+|.+||++-.-.. ...+||+|.++-..+.
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~--R~~~pvRLFEIGrVFR~D~~lDa--th~~Ef~qLeGlv~G~ 258 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLMN--KKPLPFKLFSIDRCFRREQKEDK--SHLMTYHSASCAIAGE 258 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHTT--TSCSCEEEEEEEEEECCCSCCCS--SCCSEEEEEEEEEECT
T ss_pred cCcccccchhhHHHHHHHHHh--CCCCCeEEEEeccEEecCccccc--cCCCcceEEEEEEECC
Confidence 468999999999999887653 45789999999999998621011 1348999999988775
No 70
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=95.00 E-value=0.076 Score=55.15 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=44.0
Q ss_pred ccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 239 KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 239 ~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
..+||+-|..++.....++. +..|++++++|++||++-.... ...||+|.++...+.
T Consensus 109 ~~vLRtsl~p~ll~~l~~N~----~~~~~riFEiG~Vfr~d~~d~~---h~~Ef~~Le~~~~g~ 165 (294)
T 2rhq_A 109 EILMRTHTSPVQARTMEKRN----GQGPVKIICPGKVYRRDSDDAT---HSHQFTQIEGLVVDK 165 (294)
T ss_dssp SEEECSSSHHHHHHHHHHTT----TCSCEEEEEEEEEECCCCCBTT---BCSEEEEEEEEEEES
T ss_pred cceeeccCHHHHHHHHHhcC----CCCCccEEEEcCEEecCCCCCC---CCChhhEEEEEEECC
Confidence 35899999999977766543 4679999999999998631221 336999999998875
No 71
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=94.94 E-value=0.078 Score=60.27 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=46.6
Q ss_pred ccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 239 KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 239 ~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
...|||-|..|++.+.++++. .+..|++++.+|.+||++-.-.. ...+||+|.++-..+.
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~--R~~~pvRLFEIGrVFR~D~~lDa--th~~EfhqLeGlv~G~ 258 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLMN--KKPLPFKLFSIDRCFRREQKEDK--SHLMTYHSASCAIAGE 258 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHTT--TSCSCEEEEEEEEEECCCSCCCS--SCCSEEEEEEEEEECT
T ss_pred cCcccccchhhHHHHHHHHHh--CCCCCeEEEEEeeEEccCccccc--cCCCcceEEEEEEECC
Confidence 468999999999999887653 45789999999999998621011 1348999999988775
No 72
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=94.45 E-value=0.1 Score=58.40 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=48.0
Q ss_pred cccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 238 ~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
....|||.|+.|++.+.+.++. .+..|++++++|+|||++-..... +.+||+|.++-..+.
T Consensus 191 e~svLRTsLlPGLL~~vr~N~~--r~~~pvrlFEiGrVFr~D~~~d~t--h~~ef~qLaglv~G~ 251 (549)
T 2du7_A 191 TTLTLRSHMTSGWFITLSSLIK--KRKLPLKLFSIDRCFRREQREDRS--HLMSYHSASCVVVGE 251 (549)
T ss_dssp EEEECCSTTHHHHHHHHHTTTT--TSCSSEEEEEEEEECCCCSSCSSS--CCSCEEEEEEEEECT
T ss_pred cccccccccchhHHHHHHHHHh--cCCCCeEEEEEeeEEecCCcccCc--CCCcceEEEEEEECC
Confidence 3568999999999988877643 357899999999999986210222 559999999988875
No 73
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=90.13 E-value=1.5 Score=49.76 Aligned_cols=60 Identities=8% Similarity=0.061 Sum_probs=44.8
Q ss_pred CcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 237 LIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 237 ~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
...+.|||-+..|+..+..++.. ++.|++++++|++||.+-.... -.+|+.+..+...+.
T Consensus 445 ~e~svmRtsLlpgLL~~l~~N~~---~~~~vrlFEiG~Vf~~d~~~~~---~~~e~~~la~~~~g~ 504 (589)
T 3l4g_B 445 AEFQVARTTLLPGLLKTIAANRK---MPLPLKLFEISDIVIKDSNTDV---GAKNYRHLCAVYYNK 504 (589)
T ss_dssp GGGSEECSCSHHHHHHHHHHTTT---SCSCEEEEEEEEEEEECTTSTT---SEEEEEEEEEEEESS
T ss_pred hhHhHHHHHHHHHHHHHHHHHhc---CCCceEEEEeeeEEecCCcccc---CCccccEEEEEEECC
Confidence 34569999999999988877643 3469999999999997633222 247888888866654
No 74
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=87.00 E-value=1.2 Score=43.80 Aligned_cols=64 Identities=14% Similarity=0.057 Sum_probs=42.8
Q ss_pred CCcccccCccchhhHHHHHHHhhhhccCCC-CeeeecccccccCCCCCC---CCcccccceeEeeEEEEeC
Q psy17941 236 GLIKGYLRPETAQGIFVNFKRLLEFNSGRL-PFAAAQIGNAFRNEISPR---SGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 236 g~~~~yLRPE~aqgi~~~f~~~l~~~~~~L-P~~~~qig~~FR~E~~pr---~Gl~R~REF~q~e~~~F~~ 302 (679)
+...++|||-...|+..+..+++. ++. +++++++|++|+.+-... ..+--.+|..+..+..-+.
T Consensus 55 s~e~~vmRtsLlpgLL~~~~~N~~---r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~ 122 (213)
T 3ica_A 55 SQELNCMRQTLLFGGLETLSHNLR---RKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQ 122 (213)
T ss_dssp CSSEEEECSSSHHHHHHHHHHHHT---TTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEB
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHc---CCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCC
Confidence 445679999999999988877653 444 499999999999753211 0011246666666655553
No 75
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=85.79 E-value=1.3 Score=43.35 Aligned_cols=63 Identities=10% Similarity=-0.027 Sum_probs=37.9
Q ss_pred CcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCC---CCcccccceeEeeEEEEe
Q psy17941 237 LIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPR---SGLIRVREFTMAEIEHFC 301 (679)
Q Consensus 237 ~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr---~Gl~R~REF~q~e~~~F~ 301 (679)
...++|||-+..|+..+..+++. .+.-+++++++|++|+.+-... ..+-..+|..+.-+-.-+
T Consensus 56 ~e~~vmRtsLlpgLL~~~~~N~~--r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G 121 (213)
T 3ig2_A 56 ADLNCMRQTLLFGGLESIAHNAN--RKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTG 121 (213)
T ss_dssp CSCCEECSCSHHHHHHHHHHC--------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEE
T ss_pred hhHHHHHHHhHHHHHHHHHHHhc--CCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEEC
Confidence 44569999999999988876543 2334599999999999763110 000123666666655544
No 76
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.69 E-value=3 Score=33.81 Aligned_cols=45 Identities=40% Similarity=0.362 Sum_probs=39.6
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy17941 7 EAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVL 51 (679)
Q Consensus 7 ~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~l 51 (679)
+.....+++.+..|++.||.|+..+.+...|.++|..+.++++++
T Consensus 8 ~~~~~~i~~~i~~qg~lvR~LK~~k~~~~~I~eev~kl~~~ka~l 52 (73)
T 1x59_A 8 MAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQL 52 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhc
Confidence 345677899999999999999999999999999999999888876
No 77
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=79.61 E-value=7.3 Score=45.76 Aligned_cols=59 Identities=10% Similarity=-0.058 Sum_probs=44.6
Q ss_pred cccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 238 ~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
..+.|||-+..|++.+..+++ +.+..|++++++|++||.+- ...+ . +||+|..+-..+.
T Consensus 545 e~svLRtsLlpgLL~~l~~N~--~r~~~~vrlFEiG~Vf~~d~-~~~~--~-~e~~~la~l~~G~ 603 (795)
T 2rhq_B 545 AHATLRQSLLPHLIEATAYNV--ARKNKDVRLYEIGRVFFGNG-EGEL--P-DEVEYLSGILTGE 603 (795)
T ss_dssp TSSEECSCSHHHHHHHHHHHH--HTTCCCEEEEEEEEEEECCC-TTSC--C-EEEEEEEEEEESE
T ss_pred hhhhhhhccHHHHHHHHHHHh--cCCCCCeEEEEEeeEEecCC-cccC--c-chhhEEEEEEEec
Confidence 346899999999999888764 34567999999999999652 1111 2 8999988877664
No 78
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=77.82 E-value=8 Score=45.35 Aligned_cols=53 Identities=26% Similarity=0.213 Sum_probs=43.3
Q ss_pred cccccCccchhhHHHHHHHhhhhccC-CCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCC
Q psy17941 238 IKGYLRPETAQGIFVNFKRLLEFNSG-RLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDP 303 (679)
Q Consensus 238 ~~~yLRPE~aqgi~~~f~~~l~~~~~-~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~ 303 (679)
..+.|||-+..|++.+..+++. .+ ..|++++++|++|| + +||++..+-..+..
T Consensus 540 d~svLRtsLlpgLL~~l~~N~~--r~~~~~vrlFEiG~Vf~-~----------~e~~~lagl~~G~~ 593 (785)
T 1b7y_B 540 EKAALRTHLFPGLVRVLKENLD--LDRPERALLFEVGRVFR-E----------REETHLAGLLFGEG 593 (785)
T ss_dssp TSSEECSCSHHHHHHHHHHHHH--HSCCSCEEEEEEEEEES-S----------SEEEEEEEEEESSC
T ss_pred hhhhhhhhhHHHHHHHHHHHhh--cCCCCCeEEEEEeeeec-c----------ChhhEEEEEEECCC
Confidence 3569999999999998887643 34 57999999999999 2 89999988777754
No 79
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=68.73 E-value=7.8 Score=42.73 Aligned_cols=47 Identities=32% Similarity=0.362 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHH
Q psy17941 8 AELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDER 54 (679)
Q Consensus 8 ~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~ 54 (679)
....+|-+++++|++.||.||..++++.++.++|+.|.+++.+....
T Consensus 7 ~~~~~~~~~i~~qg~~vr~lk~~~a~k~~i~~~v~~Ll~lk~~~k~~ 53 (477)
T 1r6t_A 7 ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAA 53 (477)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhHHHHHhcccccccchhhHHHHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999999999998877776543
No 80
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=43.20 E-value=73 Score=34.27 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=36.9
Q ss_pred cccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEE
Q psy17941 240 GYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 300 (679)
Q Consensus 240 ~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F 300 (679)
.-||.-|+.+..+.+.. ..| ++..+|.|||++ .-... ..-+|+|.+.-.+
T Consensus 114 ~vLRThts~~~~~~l~~-------~~~-k~~~~G~VyR~D-~~da~--h~n~fhQ~egv~l 163 (415)
T 3cmq_A 114 HMLRAHTSAHQWDLLHA-------GLD-AFLVVGDVYRRD-QIDSQ--HYPIFHQLEAVRL 163 (415)
T ss_dssp EEECSSGGGGHHHHHHT-------TCS-EEEEEEEEECCC-CCBTT--BCSEEEEEEEEEE
T ss_pred eEEcCCCcHHHHHHHHH-------CCC-CEEEeeeEEecc-chhhh--hhHHhcCCCcEEE
Confidence 36888899998877643 236 999999999998 32223 5678998886654
No 81
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=33.72 E-value=76 Score=31.54 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=42.1
Q ss_pred CCceEEEEecCCC----------CChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEE
Q psy17941 559 APLKASILPLSSN----------PEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFG 616 (679)
Q Consensus 559 aP~~V~Vi~l~~~----------~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~ 616 (679)
.|-+|+++|-..+ .........+.+.|+++||+|.+... . -..|+..|.+.|++++
T Consensus 87 kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFID-p-d~~qi~aA~~~GA~~I 152 (243)
T 1m5w_A 87 KPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFID-A-DEEQIKAAAEVGAPFI 152 (243)
T ss_dssp CCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEEC-S-CHHHHHHHHHTTCSEE
T ss_pred CCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHHhCcCEE
Confidence 4789999985421 12356677889999999999987642 1 2378999999999987
No 82
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=33.48 E-value=1.5e+02 Score=25.61 Aligned_cols=57 Identities=11% Similarity=0.179 Sum_probs=41.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCC-----------CHHHHHHHHHHhCCCEEE
Q psy17941 561 LKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGG-----------SIGKRYARTDEIAIPFGI 617 (679)
Q Consensus 561 ~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~-----------slgkq~k~Ad~~Gip~~I 617 (679)
..+.|+|++.++++.++..++.+.|++.|+...+...+. -+++-...+-+.|++=+.
T Consensus 10 ve~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmgT~IEGe~devm~vv~~~~e~~~~~G~~RV~ 77 (109)
T 1yqh_A 10 MSFSVVPQAKTKDVYSVVDKAIEVVQQSGVRYEVGAMETTLEGELDVLLDVVKRAQQACVDAGAEEVI 77 (109)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHHSCSEEEECSSCEEEEECHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEEcCHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 578889998656788999999999999999998875332 123334444666877443
No 83
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=27.20 E-value=98 Score=31.28 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=41.0
Q ss_pred CCceEEEEecCCC----------CChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEE
Q psy17941 559 APLKASILPLSSN----------PEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFG 616 (679)
Q Consensus 559 aP~~V~Vi~l~~~----------~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~ 616 (679)
.|-+|+++|-... .........+.+.|+++||+|.+... . -..|+..|.+.|++++
T Consensus 115 kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFID-p-d~~qI~aA~~~GAd~I 180 (278)
T 3gk0_A 115 RPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFID-P-DEAQIRAAHETGAPVI 180 (278)
T ss_dssp CCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEEC-S-CHHHHHHHHHHTCSEE
T ss_pred CCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHHhCcCEE
Confidence 4789999985421 12355667788899999998887642 2 2358999999999986
No 84
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=26.15 E-value=90 Score=36.53 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=40.9
Q ss_pred CCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEe
Q psy17941 236 GLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFC 301 (679)
Q Consensus 236 g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~ 301 (679)
+...++|||-...|+..+..+++. .+.-+++++++|.+|+.+-.+..+ .+|..+.-+-..+
T Consensus 538 s~e~svmRtsLlpgLL~~~~~N~~--r~~~~v~lFEiG~Vf~~~~~~~~~---~~e~~~la~~~~G 598 (795)
T 3pco_B 538 SVEMSAMRLSLWTGLLATVVYNQN--RQQNRVRIFESGLRFVPDTQAPLG---IRQDLMLAGVICG 598 (795)
T ss_dssp CSTTCEECSSSHHHHHHHHHHHHT--SSCCCCEEEEEEEEEEECTTSSTT---EEEEEEEEEEEES
T ss_pred chhHHHHHHHHHHHHHHHHHHHHh--CCCCCccEEEeeeEEecCCCcccC---cchhheEEEEEEC
Confidence 445679999999999988877653 334579999999999875322222 3555555544433
No 85
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=25.78 E-value=79 Score=27.18 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=30.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCC
Q psy17941 561 LKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSG 598 (679)
Q Consensus 561 ~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~ 598 (679)
..+.|+|++.+++..++..++.+.|++.|+++.+...+
T Consensus 5 ve~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmg 42 (104)
T 2ibo_A 5 IALQVLPLVQGIDRIAVIDQVIAYLQTQEVTMVVTPFE 42 (104)
T ss_dssp EEEEEEECSCSHHHHHHHHHHHHHHHHSSSEEEECSSC
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHcCCCeEecCCc
Confidence 46788999854568888899999999999999887543
No 86
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=23.59 E-value=93 Score=26.89 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=30.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCC
Q psy17941 561 LKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDS 597 (679)
Q Consensus 561 ~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~ 597 (679)
..+.|+|++.++++.++..++.+.|++.|+...+...
T Consensus 18 v~~sv~Plg~~~svs~~Va~~i~vi~~sGL~y~~~pm 54 (106)
T 1vk8_A 18 VSIKVVPAVEDGRLHEVIDRAIEKISSWGMKYEVGPS 54 (106)
T ss_dssp EEEEEEESSCGGGHHHHHHHHHHHHHTTCSCEEECSS
T ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHcCCCeEeCCC
Confidence 5788899986556888999999999999999988643
No 87
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=21.63 E-value=1.8e+02 Score=27.23 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHC-CCeEEEe---CCCCCHHHHHHHHHHhCCCEEEEEeCC
Q psy17941 574 FQPFIKMLSSELSQN-GISFKVD---DSGGSIGKRYARTDEIAIPFGITIDFD 622 (679)
Q Consensus 574 ~~~~a~~l~~~Lr~~-Gi~v~~D---~~~~slgkq~k~Ad~~Gip~~IiVG~~ 622 (679)
....+.+|.+.|++. |+.|.+. +...++..|.+.|+..++-+.|-|=-+
T Consensus 30 ~l~ia~~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~N 82 (179)
T 1jwq_A 30 NLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHAN 82 (179)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccC
Confidence 457888999999999 9999875 345689999999999999998888433
No 88
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=21.57 E-value=1e+02 Score=26.20 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=30.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCC
Q psy17941 561 LKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDS 597 (679)
Q Consensus 561 ~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~ 597 (679)
..+.|+|++.++...++..+..+.|++.|+...+...
T Consensus 9 ve~sv~Plg~~~svs~~Va~~i~~l~~sGl~y~~~pm 45 (100)
T 2epi_A 9 AEVSIIPLGKGASVSKYVKKAIEVFKKYDLKVETNAM 45 (100)
T ss_dssp EEEEEEEECBSSCCHHHHHHHHHHHTTSSCEEEEETT
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHcCCCeEecCC
Confidence 4788899985456888999999999999999988753
No 89
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=21.53 E-value=55 Score=34.30 Aligned_cols=32 Identities=31% Similarity=0.212 Sum_probs=27.1
Q ss_pred eeecccccccCCCCCCCCcccccceeEeeEEEEeC
Q psy17941 268 AAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCD 302 (679)
Q Consensus 268 ~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~ 302 (679)
++||||+|||+| ..+.. |..||||.|+|.-..
T Consensus 111 rvyqIg~~FR~E-~~~~r--H~pEFt~lE~e~af~ 142 (345)
T 3a5y_A 111 PVFQLCRSFRNE-EMGRY--HNPEFTMLEWYRPHY 142 (345)
T ss_dssp SEEEEEEEECCC-CCBTT--BCSEEEEEEEEEETC
T ss_pred cEEEEEcceeCC-CCccc--ccchhheeeeeeeCC
Confidence 799999999999 44554 999999999998554
No 90
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=21.16 E-value=2.5e+02 Score=23.85 Aligned_cols=58 Identities=12% Similarity=0.253 Sum_probs=41.7
Q ss_pred ceEEEEecCC-CCChHHHHHHHHHHHHHCCCeEEEeCCCC-----------CHHHHHHHHHHhCCCEEEE
Q psy17941 561 LKASILPLSS-NPEFQPFIKMLSSELSQNGISFKVDDSGG-----------SIGKRYARTDEIAIPFGIT 618 (679)
Q Consensus 561 ~~V~Vi~l~~-~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~-----------slgkq~k~Ad~~Gip~~Ii 618 (679)
..+.|+|++. ++++.++..++.+.|++.|+.+.+...+. -+++-...+.+.|++=+++
T Consensus 8 ve~sv~Plg~~~~svs~~Va~~i~~i~~sGl~y~~~pm~T~IEGe~devm~vv~~~~e~~~~~G~~RV~~ 77 (104)
T 1lxj_A 8 ADVCMVPIGTDSASISDFVALIEKKIRESPLKSTLHSAGTTIEGPWDDVMGLIGEIHEYGHEKGYVRVHT 77 (104)
T ss_dssp EEEEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEeCCCccEEEcCHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 4788899975 35788999999999999999998875331 2345555556677775543
Done!