RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17941
(679 letters)
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 858 bits (2217), Expect = 0.0
Identities = 406/680 (59%), Positives = 516/680 (75%), Gaps = 2/680 (0%)
Query: 1 MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAP 60
M E LAPLR AV++QGD+VR LK + AP++DV KAVAELK RK+VL+ +EL L P
Sbjct: 1 MDGAGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQP 60
Query: 61 FVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQ 120
DRAKMED LKRRFFYDQ+F+IYGG+SG YDFGP+GCALK N++ WRQ F+ EEQ
Sbjct: 61 KDDIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQ 120
Query: 121 MLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQS 180
+LE+DC++LT EPVLK SGHVD+FAD MVKD+K GECFR DHL+KAHL+KL ++ K
Sbjct: 121 ILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVE 180
Query: 181 VKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKG 240
K E ++ +LD + E+ D+ YN+KSP+T NDLS P+ FNLMF T IGP G + G
Sbjct: 181 KKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPG 240
Query: 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 300
YLRPETAQGIF+NFKRLLEFN G+LPFAAAQIGN+FRNEISPRSGLIRVREFTMAEIEHF
Sbjct: 241 YLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 300
Query: 301 CDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARI 360
DP++K H KF +V + LYSA Q+ G+ A ++ +G+AV ++ N LGYF+ RI
Sbjct: 301 VDPSEKDHPKFQNVADLHLY-LYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRI 359
Query: 361 QKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHF 420
++ VGI P+KLRFRQHM NEMAHYACDCWDAE TSYGW+E VGCADRS YDL+ H
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419
Query: 421 KATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEES 480
+AT V L AEK L EP+T +V+ +KG IGK +KKDAK + + LA D ++ +E
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479
Query: 481 LNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNF 540
LN G++ + + K F LTKDMI++K+ KT +VEE++P+VIEPSFG+GRIMY +FEH F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 539
Query: 541 KMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGS 600
+R+GDEQRT+ + P +VAP K S+LPLS N EF PF+K LS L+++G+S KVDDS GS
Sbjct: 540 HVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGS 599
Query: 601 IGKRYARTDEIAIPFGITIDFDTLK-EPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659
IG+RYARTDEI + FG+TIDFDT+ PH+ TLR+RDSM Q+R +++E+ S+++DL+
Sbjct: 600 IGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGN 659
Query: 660 ITWEDVQSKYPKFEAQEGSK 679
ITW DV+++YP FE QE K
Sbjct: 660 ITWADVEARYPLFEGQETGK 679
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Length = 505
Score = 520 bits (1342), Expect = e-180
Identities = 154/609 (25%), Positives = 236/609 (38%), Gaps = 113/609 (18%)
Query: 63 SSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFV-LEEQM 121
++ ++ L KRR F QS IYGG+ G YD+GP+G LK N+ AW + V + M
Sbjct: 1 AASSLDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDM 60
Query: 122 LEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSV 181
+D S+LT VL SGH FAD MV + T + +RLDHL+K E++ V
Sbjct: 61 EGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEV 120
Query: 182 KEECADIVIKLDGMSKNEMDDVLKKYNIKSPLT--KNDLSEPMEFNLMFATQIGPSGL-- 237
+EE +++ + + + P + D + P FN+MF GP G
Sbjct: 121 EEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRG 180
Query: 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEI 297
+ YLRPETAQGIFVNFK +L+ S +L F AQIG AFRNEI+PR+ + RVREF EI
Sbjct: 181 LLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEI 240
Query: 298 EHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFM 357
E+F P + + Y++
Sbjct: 241 EYFVRPGEDEYWHR-------------------------------------------YWV 257
Query: 358 ARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLT 417
K+ +G+ E L Q AHYA D +G +E G A R+ +DL
Sbjct: 258 EERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLG 317
Query: 418 QHFKATGVRLSAEKHLPEPQTRE---IVEPVLNKGIIGKEFKKDAKTICDALAALDLNSV 474
H K + L + + +P K + + A LA L
Sbjct: 318 SHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFT 377
Query: 475 SAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYA 534
+ +L + + + T + + + ++ + G+GR++Y
Sbjct: 378 REELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLL--ALGLGRVLYE 435
Query: 535 LFEHNFK-MRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFK 593
+ K R DE T PF
Sbjct: 436 DTGNIGKAYRRHDEVGT-------------------------PF---------------- 454
Query: 594 VDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIK 653
D I T + +VT+R+RD+M Q+R+ V+E+ ++
Sbjct: 455 ---------AVTVDYDTIGQSKD-----GTTRLKDTVTVRDRDTMEQIRLHVDELEGFLR 500
Query: 654 DLSLAKITW 662
+ ++ W
Sbjct: 501 E----RLRW 505
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four
helix bundle, DNA binding protein; 1.95A {Mus musculus}
SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Length = 454
Score = 151 bits (382), Expect = 1e-39
Identities = 50/372 (13%), Positives = 86/372 (23%), Gaps = 127/372 (34%)
Query: 69 KMEDLL---KRRFFYD------QSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFV-LE 118
E L+ +RR F + ++ G FGP+G L+ N+ S W V
Sbjct: 23 AREALVDLCRRRHFLSGTPQQLSTAALLSGCHA--RFGPLGVELRKNLASQWWSSMVVFR 80
Query: 119 EQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTP 178
EQ+ VD S H + + P
Sbjct: 81 EQVFAVD------------SLHQEPGSSQPRDSAFRLVS--------------------P 108
Query: 179 QSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLI 238
+S++E L + +
Sbjct: 109 ESIRE---------------------------------ILQDREPSKEQLVAFLENLLKT 135
Query: 239 KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFR---NEISPRSGLIRVREFTMA 295
G LR G ++ L+ + +LPF AQIG F N S + RV E T A
Sbjct: 136 SGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEA 195
Query: 296 EIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGY 355
+ F +++ L +
Sbjct: 196 SLVWFTPTRT-------------------------------------------SSQWLDF 212
Query: 356 FMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYD 415
++ + + P +G + +
Sbjct: 213 WLRHRLLWWRKFAMSPSNFSSADC----QDELGRKGSKLYYSFPWGKEPIETLWNLGDQE 268
Query: 416 LTQHFKATGVRL 427
L + +
Sbjct: 269 LLHTYPGNVSTI 280
Score = 143 bits (361), Expect = 6e-37
Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 513 HVEEIIPSVIEPSFGIGRIMYALFEHNFK------MRDGDEQRTYLALPPLVAPLKASIL 566
+ ++P V+ S + A +F+ R QR L L P +AP+K ++
Sbjct: 285 GRKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALD 344
Query: 567 PLSSN-PEFQPFIKMLSSELSQNGISFKV---DDSGGSIGKRYARTDEIAIPFGITIDFD 622
E + + L +EL +NGIS + S+ + +++ DE+++ F + +
Sbjct: 345 VGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTET 404
Query: 623 TLKEPHSVTLRERDSMTQVRVKVNEVASVIKDL 655
TL E + LR RD+ + + ++++ +
Sbjct: 405 TL-ENGLIQLRSRDTTMKEMMHISKLRDFLVKY 436
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET:
DNA; 3.10A {Homo sapiens}
Length = 459
Score = 150 bits (379), Expect = 2e-39
Identities = 46/363 (12%), Positives = 99/363 (27%), Gaps = 74/363 (20%)
Query: 126 CSILTLEPVLKASGHVDRFADLMV--KDLKTGECFRLDHLIKAHLEKLAA--EPKTPQSV 181
C + + G VD ++ + G + ++ + E A + +++
Sbjct: 10 CHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEAL 69
Query: 182 KEECADIVIKLDGMSKNEMDDVLKKYNIK-----SPLTKNDLSEPMEFNLMFATQIGP-- 234
E C + D +L + L KN +E ++F Q+ P
Sbjct: 70 LEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVD 129
Query: 235 ------------SGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFR---NE 279
+G LR G ++ L+ + RLP+ AQIG F +
Sbjct: 130 ALHHKPGPLLPGDSAFRGGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDT 189
Query: 280 ISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITI 339
R+G+ + E T A + F P
Sbjct: 190 KQIRNGVKSIGEKTEASLVWFTPPRT---------------------------------- 215
Query: 340 GEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTS 399
+N+ L +++ ++ + P E
Sbjct: 216 ---------SNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKG----NKLYYNFP 262
Query: 400 YGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDA 459
+G + ++L + +L + + ++ + + D+
Sbjct: 263 WGKELIETLWNLGDHELLHMYPGNVSKLH-GRDGRKNVVPCVLSVNGDLDRGMLAYLYDS 321
Query: 460 KTI 462
+
Sbjct: 322 FQL 324
Score = 136 bits (342), Expect = 2e-34
Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 11/168 (6%)
Query: 498 LTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFK------MRDGDEQRTY 551
L ++ K + ++P V+ + + R M A +F+ R + R
Sbjct: 280 LHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKV 339
Query: 552 LALPPLVAPLKASILPLSSN-PEFQPFIKMLSSELSQNGISFK---VDDSGGSIGKRYAR 607
L L P +AP+K ++ E + + L +EL +NGIS ++ S+ + Y++
Sbjct: 340 LKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSK 399
Query: 608 TDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDL 655
DE++I F + + TL E + LR RD+ + + ++++ +
Sbjct: 400 YDEMSILFTVLVTETTL-ENGLIHLRSRDTTMKEMMHISKLKDFLIKY 446
Score = 32.4 bits (73), Expect = 0.52
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 69 KMEDLLKRRFFYDQSFSIYGGIS----GQYDFGPMGCALKTNMLSAWRQFFV-LEEQMLE 123
+ ++ +RR F S S FGP+G L+ N+ + W V EQ+
Sbjct: 68 ALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFP 127
Query: 124 VDCSILTLEP 133
VD P
Sbjct: 128 VDALHHKPGP 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.8 bits (162), Expect = 2e-11
Identities = 65/570 (11%), Positives = 152/570 (26%), Gaps = 200/570 (35%)
Query: 35 LDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQY 94
+D + + + + + + FV +FD ++D+ K ++ I
Sbjct: 7 MDFETGEHQYQYKDILSVFED----AFVDNFDCKDVQDMPKSILSKEEIDHIIM------ 56
Query: 95 DFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKT 154
K + R F+ L + E+ V +F
Sbjct: 57 --------SKDAVSGTLRLFWTLLSKQEEM----------------VQKF---------V 83
Query: 155 GECFRLDH--LIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSP 212
E R+++ L + + E + P + + +L + V KYN+
Sbjct: 84 EEVLRINYKFL----MSPIKTEQRQPSMMTRMYIEQRDRLYNDN-----QVFAKYNVSRL 134
Query: 213 LTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVN----F-KRLLEFNSGRLPF 267
L + L++ LRP + + ++ K +
Sbjct: 135 QPYLKLRQ---------------ALLE--LRPA--KNVLIDGVLGSGKTWV--------- 166
Query: 268 AAAQIGNAFRNEISPRSGLIRVREF-----TMAEIEHFCDPTDKSHAKFSDVETTQMMVL 322
A + + +F + C+ + T + +L
Sbjct: 167 -ALD---VCLSY-----KVQCKMDFKIFWLNLKN----CNSPE-----------TVLEML 202
Query: 323 YSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGN 382
Q+D R ++ I + R+ + +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLR----------------------IHSIQAELRRLLKS 240
Query: 383 EMAHYAC-----DCWDAECLTSYGWVECVGC------ADRSAYDLTQHFKATGVRLS-AE 430
+ + C + +A+ ++ + C + D T + L
Sbjct: 241 KP-YENCLLVLLNVQNAKAWNAFN----LSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 431 KHLPEPQTREIVEPVLNK-----------------GIIGKEFKKDAKTI-------CDAL 466
L + + ++ L+ II + + T CD L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 467 AALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHV--EEIIPSVIEP 524
+ +S++ +E + ++ L V T + ++I S +
Sbjct: 356 TTIIESSLNVLEPAE-YRKMFDRL-----SVFPPS---AHIPTILLSLIWFDVIKSDVM- 405
Query: 525 SFGIGRIMYALFEHNFKM--RDGDEQRTYL 552
++ L H + + + E +
Sbjct: 406 -----VVVNKL--HKYSLVEKQPKESTISI 428
Score = 60.3 bits (145), Expect = 2e-09
Identities = 52/329 (15%), Positives = 97/329 (29%), Gaps = 78/329 (23%)
Query: 36 DV--KKAVAELKLRKKVL-DERELKLAPFVSSFDRAK--MEDLLKRRFFYDQS---FSIY 87
+V KA L K+L R ++ F+S+ ++ D+ Y
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKY 310
Query: 88 GGISGQ------YDFGPMGCAL----KTNMLSAWRQF-FVLEEQMLEV-DCSILTLEPVL 135
Q P ++ + L+ W + V +++ + + S+ LEP
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 136 KASGHVDRFADLMVKDLKTGECFRLDHLIKAH-LEKL--AAEPKTPQSVKEECA------ 186
+ F L V F I L + V +
Sbjct: 371 ----YRKMFDRLSV--------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 187 -----------DIVIKLDGMSKNEMD---DVLKKYNIKSPLTKNDLSEPMEFNLMFATQI 232
I ++L +NE ++ YNI +DL P F + I
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFYSHI 477
Query: 233 GPSGLIKGY-LRPETAQGIFVNFKRL-LEFNSGRLPFAAAQI---GNAFRNEISPRSGLI 287
G+ L+ F+ + L+F F +I A+ S + L
Sbjct: 478 -------GHHLKNIEHPERMTLFRMVFLDFR-----FLEQKIRHDSTAWNASGSILNTLQ 525
Query: 288 RVREFTMAEIEHFCDPTDKSHAKFSDVET 316
+++ + + CD K + +
Sbjct: 526 QLKFYK----PYICDNDPKYERLVNAILD 550
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 1e-09
Identities = 93/526 (17%), Positives = 161/526 (30%), Gaps = 161/526 (30%)
Query: 242 LRPET-AQG-----------IFVNFKRLLE-FNSGRLPFAAAQIGNAFRNEISPRSGLIR 288
RP T + G F +L E FN LP G A +E + + L
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-ILP--EPTEGFAADDEPTTPAEL-- 60
Query: 289 VREFTMAEIEHFCDPTDKSHAK------FSDVETTQM------MVLYSACNQMDGKPAER 336
V +F + + +P+ ++ E + + + D +
Sbjct: 61 VGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 337 ITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLR-----FRQHMGNEMAHYAC-- 389
+ +++ Y ARI + P + FR A
Sbjct: 120 KEL---IKN---------YITARI------MAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 390 ------DCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVE 443
D ++ E L R Y ++ SAE +T E
Sbjct: 162 GQGNTDDYFE-E-L-------------RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 444 PVLNKGIIGKEFKKDAKTI--CDALAALDLNSVSAVEESLNTNGKYEL---LVDDKEFVL 498
V +G+ E+ ++ D L + + S G +L +V K
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLS------IPI--SCPLIGVIQLAHYVVTAKLLGF 258
Query: 499 T-KDMISIKKSTKTFHVEEIIPSVI------EPSF--GIGRIMYALFEHNFKMRDGDE-Q 548
T ++ S K T H + ++ +V SF + + + LF G
Sbjct: 259 TPGELRSYLKGA-TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI------GVRCY 311
Query: 549 RTY--LALPPLVAPLKASI-----LP---LS----SNPEFQPFIKMLSSELSQNG---IS 591
Y +LPP + L+ S+ +P LS + + Q ++ +S L IS
Sbjct: 312 EAYPNTSLPPSI--LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 592 -------FKVDDSG---------GSIGKRYART--DEIAIPFG-----ITIDFDTLKEP- 627
V SG ++ K A + D+ IPF + F + P
Sbjct: 370 LVNGAKNLVV--SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 628 HSVTLRERDSMTQVRVKVNEVASVIKDLSLAKI------TWEDVQS 667
HS L + + N V+ KD+ +I D++
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDI---QIPVYDTFDGSDLRV 470
Score = 53.5 bits (128), Expect = 2e-07
Identities = 59/385 (15%), Positives = 116/385 (30%), Gaps = 117/385 (30%)
Query: 139 GHVDR-FADLMVKDL-KTGECFRLDHLIK---AHLEKLAAEPKTPQSVKEECADIVIKLD 193
G+ D F +L +DL +T + LIK L +L + V + +I+ L+
Sbjct: 164 GNTDDYFEEL--RDLYQTYHVL-VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 194 GMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIG-------PSGLIKGYLRPET 246
S D L LS P+ L+ Q+ G G LR
Sbjct: 221 NPSNTPDKDYL-------------LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 247 ------AQGIFV---------------NFKRLLE--FNSG--------RLPFAAAQIGNA 275
+QG+ + ++ + F G + + ++
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 276 FRNEISPRSGLIRVREFTMAEIEHFCDPTDK-----SHAKFSDVETTQMMV-------LY 323
N S ++ + T +++ + + T+ + S V + +V LY
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 324 SACNQMDGKPAE------RI--------------TIGEAVRSNLV--ANETLGYFMARIQ 361
+ A RI + S+L+ A++ + + +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK-- 445
Query: 362 KFMISVGIDPEKLRF----------RQHMGNEMAHYACDC-------WDAECLTSYGWVE 404
+V + + ++ + + ++ DC W+ +
Sbjct: 446 ---NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 405 CVGCADRSAY-DLTQHFK-ATGVRL 427
G S LT K TGVR+
Sbjct: 503 DFGPGGASGLGVLTHRNKDGTGVRV 527
Score = 48.1 bits (114), Expect = 9e-06
Identities = 67/373 (17%), Positives = 102/373 (27%), Gaps = 160/373 (42%)
Query: 194 GMSKNEMDDVLKKYNIKSPLTKN-----D--LSEPMEFNLMFATQIGPSGLIKGYLRPET 246
GM MD Y S ++ D + F+++ P L + E
Sbjct: 1630 GMG---MDL----YK-TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI-HFGGEK 1680
Query: 247 AQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRS---------GLIRVREFT---- 293
+ I N+ ++ F + + F+ EI+ S GL+ +FT
Sbjct: 1681 GKRIRENYSAMI-FETI--VDGKLKTEKIFK-EINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 294 ----MAEIE----HFCDPTDKSHAKFSDVETTQMMVL--YSA--CNQMDGKPAERITIGE 341
A E P D + A S L Y+A A+ ++I
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHS---------LGEYAALAS------LADVMSIES 1781
Query: 342 AVR---------SNLVANETLG---YFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYAC 389
V V + LG Y M I ++ E L++
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY------------- 1828
Query: 390 DCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPV-LN- 447
VE VG K TG +VE V N
Sbjct: 1829 ------------VVERVG-------------KRTG---------------WLVEIVNYNV 1848
Query: 448 KG---IIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMIS 504
+ + + L ALD V LN L K I
Sbjct: 1849 ENQQYVAAGD-----------LRALD-----TVTNVLNFIK------------LQK--ID 1878
Query: 505 IKKSTKTFHVEEI 517
I + K+ +EE+
Sbjct: 1879 IIELQKSLSLEEV 1891
Score = 36.2 bits (83), Expect = 0.050
Identities = 44/265 (16%), Positives = 71/265 (26%), Gaps = 83/265 (31%)
Query: 79 FYDQS-------FSIYGGISGQYDFGPM-------------GCALKTNMLSAWRQFFVLE 118
F+ F I G+ + + + MLS +
Sbjct: 292 FFVSVRKAITVLFFI--GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS------ISN 343
Query: 119 EQMLEVDCSILTLEPVLKASGHV--------DRFADLMVKDLKTGECFRLDHLIKAHLEK 170
+V + L A V +V +G L L L K
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL---VV----SGPPQSLYGL-NLTLRK 395
Query: 171 LAAEPKTPQS-VK--EECADIVIK------------LDGMSKNEMDDVLKKYNIKSPLTK 215
A QS + E + L S D L K N+
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD-LVKNNVS--FNA 452
Query: 216 NDLSEPMEFNLMFATQIGPSGL--IKGYLRPETAQGIF---VNFKRLLEFNS------GR 264
D+ P ++ T G S L + G + I V ++ +F + G
Sbjct: 453 KDIQIP-----VYDTFDG-SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG- 505
Query: 265 LPFAAAQIGNAFRNEISPRSGLIRV 289
P A+ +G + +G +RV
Sbjct: 506 -PGGASGLGVLT-HRNKDGTG-VRV 527
Score = 30.8 bits (69), Expect = 1.9
Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 61/180 (33%)
Query: 23 IVRALKAEGAPELDVKKAVA-----E---LKLRKKVLD-ERELKLAPFVSSFDRAK-MED 72
LK++G + A E L V+ E +++ V F R M+
Sbjct: 1743 AFEDLKSKGL--IPADATFAGHSLGEYAALASLADVMSIESLVEV---V--FYRGMTMQV 1795
Query: 73 LLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILT-- 130
+ R G+ ++G M A+ ++A ++ L+ +
Sbjct: 1796 AVPR------------DELGRSNYG-M-IAINPGRVAA-----SFSQEALQYVVERVGKR 1836
Query: 131 ----LEPV--------LKASGH---VDRFADLM-------VKDLKTGECFRLDHLIKAHL 168
+E V A+G +D +++ + ++ + L+ ++ HL
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE-VEGHL 1895
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 50.8 bits (121), Expect = 2e-08
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 2 TDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERE 55
++ L V +QG+IVR LKA+ A + +V VA+L KK L E
Sbjct: 7 GTTAKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAE 60
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase,; HET: 5CA; 2.55A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 55.1 bits (133), Expect = 5e-08
Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 525 SFGIG-RIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQ---PFIKM 580
+G+ R++ ++ GDE L LPP VA + I+P+ + +
Sbjct: 285 CYGLSDRVIASVI-----AIHGDESG--LCLPPDVAAHQVVIVPIIFKKAAEEVMEACRE 337
Query: 581 LSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQ 640
L S L G +DD G++Y + +P + I L E + + RD+ +
Sbjct: 338 LRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDL-EKGAAVISRRDTGEK 396
Query: 641 VRVKVNEVASVIKDLSLAKITWEDVQSK 668
V + + +++L +D+
Sbjct: 397 VTADLQGIEETLREL------MKDILEN 418
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 45.5 bits (107), Expect = 1e-06
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 8 AELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERE 55
AE A L VK QG+ VR LK + A +++ VA+L K L E
Sbjct: 9 AERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDE 56
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA
synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP:
c.51.1.1 d.68.5.1 d.104.1.1
Length = 459
Score = 49.7 bits (119), Expect = 2e-06
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 525 SFGIG-RIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQ---PFIKM 580
+GI R++ ++ GDE+ L LPP+VAP++ I+PL + K
Sbjct: 253 CYGISDRVIASII-----AIHGDEKG--LILPPIVAPIQVVIVPLIFKGKEDIVMEKAKE 305
Query: 581 LSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQ 640
+ +L +DD G+++ + +P I + ++ +TL RD+M +
Sbjct: 306 IYEKLK-GKFRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIEN-KKITLFRRDTMEK 363
Query: 641 VRVKVNEVASVIKDLSLAKITWEDVQSK 668
+V ++ V++ ++
Sbjct: 364 FQVDETQLMEVVEKT------LNNIMEN 385
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix,
ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Length = 57
Score = 44.1 bits (104), Expect = 2e-06
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 9 ELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDE 53
+ L V QGD+VR LKA+ AP+ DV AV +L K E
Sbjct: 1 DSLVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKE 45
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein
transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3
PDB: 1r1b_A
Length = 59
Score = 44.1 bits (104), Expect = 3e-06
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 13 LRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDE 53
+ + QG++VR LKAE AP+ V +AV L K E
Sbjct: 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKE 42
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris}
PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Length = 458
Score = 48.5 bits (116), Expect = 5e-06
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 525 SFGIG--RIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQP-FIKML 581
S+G+G R++ A+ E D+ + P VAP + +IL L L
Sbjct: 335 SYGVGVSRLLGAIIEACH-----DDNG--IIWPEAVAPFRVTILNLKQGDAATDAACDQL 387
Query: 582 SSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQV 641
ELS G+ DD+ G ++A D I IP+ I + L E V L+ R +
Sbjct: 388 YRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGK-VELKRRSDGARE 446
Query: 642 RVKVNEVASVI 652
+ + +V + +
Sbjct: 447 NLALADVVARL 457
Score = 44.2 bits (105), Expect = 1e-04
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 265 LPFAAAQIGNAFRNEISPRSGLIRVREFTM 294
LP I FR+E PR G++R REF M
Sbjct: 148 LPLNLYHIQWKFRDEQRPRFGVMRGREFLM 177
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing,
translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB:
2j3m_A*
Length = 572
Score = 48.3 bits (116), Expect = 6e-06
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 264 RLPFAAAQIGNAFRNEISPRSGLIRVREFTM 294
RLP QI +R+E RSGL+R REF M
Sbjct: 127 RLPLNLYQIQTKYRDEKRSRSGLLRGREFIM 157
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline
+ tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A
{Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
PDB: 1h4q_A* 1h4t_A 1h4s_A
Length = 477
Score = 45.8 bits (109), Expect = 4e-05
Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 20/148 (13%)
Query: 525 SFGIG-RIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQ---PFIKM 580
S+G+ R + A+ M GD++ L LPP +AP++ I+P+ + + +
Sbjct: 258 SWGLSWRFIGAII-----MTHGDDRG--LVLPPRLAPIQVVIVPIYKDESRERVLEAAQG 310
Query: 581 LSSELSQNGISFKVDDS-GGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMT 639
L L G+ +DD + G ++ + +PF + + L E L R
Sbjct: 311 LRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDL-EGGQAVLASRLGGK 369
Query: 640 QVRVKVNEVASVIKDLSLAKITWEDVQS 667
+ + + + + +
Sbjct: 370 ET-LPLAALPEALPGK------LDAFHE 390
Score = 32.7 bits (75), Expect = 0.40
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 265 LPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSD--VETTQMMVL 322
LP Q GN R E+ R +R EF E H HA + E +M+ +
Sbjct: 130 LPQLLNQWGNVVRWEMRTRP-FLRTSEFLWQEG-HTA------HATREEAEEEVRRMLSI 181
Query: 323 YSAC 326
Y+
Sbjct: 182 YARL 185
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 43.7 bits (103), Expect = 1e-04
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 239 KGYLRPETAQG---IFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMA 295
K LRP A ++ +RL + P +IG +R E G + EFTM
Sbjct: 124 KKCLRPMLAPNLYTLWRELERLWD-----KPIRIFEIGTCYRKE---SQGAQHLNEFTML 175
Query: 296 EIEHFCDPTDKSHAKFSD 313
+ P ++ H + D
Sbjct: 176 NLTELGTPLEERHQRLED 193
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
adenylate analog, deletion mutant, ligase; HET: TSB;
1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
1evk_A* 1fyf_A* 1kog_A*
Length = 401
Score = 41.0 bits (97), Expect = 0.001
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 553 ALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIA 612
P +AP++ I+ ++ ++ L+ +LS GI K D IG + R +
Sbjct: 291 FFPTWLAPVQVVIMNITD--SQSEYVNELTQKLSNAGIRVKADLRNEKIGFK-IREHTLR 347
Query: 613 -IPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659
+P+ + D E V +R R + VNEV ++ ++
Sbjct: 348 RVPYMLVCG-DKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSR 394
Score = 31.0 bits (71), Expect = 1.2
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 19/71 (26%)
Query: 260 FNSGR-----LPFAAAQIGNAFRNEIS-PRSGLIRVREFT-------------MAEIEHF 300
FN G LP A+ G+ RNE S GL+RVR FT E+
Sbjct: 100 FNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGC 159
Query: 301 CDPTDKSHAKF 311
++ F
Sbjct: 160 IRLVYDMYSTF 170
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 40.8 bits (96), Expect = 0.001
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 19/133 (14%)
Query: 525 SFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSE 584
S G+ R++ L + + + P A ++ ++ E P +S +
Sbjct: 348 SIGLTRLISRLLKAG--------------ILNTLPPTPAQVVVVNMQDELMPTYLKVSQQ 393
Query: 585 LSQNGISFKVDDSGGSIGK--RYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVR 642
L Q G++ + +GK + A D+ I F + I D +L++ S QV
Sbjct: 394 LRQAGLNVITNFEKRQLGKQFQAA--DKQGIRFCVIIGADEAAA-QKSSLKDLQSGEQVE 450
Query: 643 VKVNEVASVIKDL 655
V + ++A IK
Sbjct: 451 VALADLAEEIKRR 463
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 39.2 bits (92), Expect = 0.004
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 7/108 (6%)
Query: 553 ALPPLVAPLKASILPLSSNP----EFQPFIKMLSSELSQNGISFKVDDSGG-SIGKRYAR 607
+P +AP++ +++ + + E + ++ L G V S + R
Sbjct: 331 RMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSD-VR 389
Query: 608 TDEIA-IPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKD 654
E P + +R D + R ++ D
Sbjct: 390 HIESTAKPAVNVFIGAKEVREKVLDVRVFDLESMKRRRLAIAYGDAAD 437
Score = 30.0 bits (68), Expect = 2.5
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 262 SGR----LPFAAAQIGNAFRNEIS-PRSGLIRVREFTM--AEIEHFCDP 303
R LPF + G R E S GL+RVR FT A I
Sbjct: 125 KHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHI--IVPG 171
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 38.2 bits (88), Expect = 0.008
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 269 AAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDP 303
+ G + R E G+ RV EF EI
Sbjct: 348 FDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGTK 382
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 37.9 bits (88), Expect = 0.008
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 242 LRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFC 301
LRP ++ ++L + P +IG +R E S + EFTM
Sbjct: 133 LRPMLTPNLYNYLRKLD--RALPDPIKIFEIGPCYRKE-SDGKE--HLEEFTMLVFWQM- 186
Query: 302 DPTDKSHAKFSDVETTQMMVL 322
S ++E+ L
Sbjct: 187 ----GSGCTRENLESIITDFL 203
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, prors, cysrs, RS, translation, ATP-binding,
nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia
atcc 50803}
Length = 518
Score = 38.2 bits (89), Expect = 0.008
Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 19/158 (12%)
Query: 525 SFGIG-RIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQP------- 576
GI R++ GD L LPPL+AP+ I+P+ +
Sbjct: 270 CAGISTRVLACAL-----SIHGDSGG--LVLPPLIAPIHVVIIPIGCGKKNNQESDQQVL 322
Query: 577 -FIKMLSSEL-SQNGISFKVDDSGG-SIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLR 633
+ ++ L S+ G+ +DD S+G + + +P I + L +
Sbjct: 323 GKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLAN-GQCIVV 381
Query: 634 ERDSMTQVRVKVNEVASVIKDLSLAKITWEDVQSKYPK 671
RD + + + + V++
Sbjct: 382 PRDVGKDQKRVIPITEVMKVSSHTTENHELVVKNVIKD 419
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 38.0 bits (89), Expect = 0.009
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 17/129 (13%)
Query: 525 SFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSE 584
G I L N + I + + S +
Sbjct: 311 GMGDAVISLLLKREN--------------VQIPREKKSVYICRV--GKINSSIMNEYSRK 354
Query: 585 LSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVK 644
L + G++ V+ + + I F + L+ VT+R + +Q V
Sbjct: 355 LRERGMNVTVEIMERGLSAQLKYASAIGADFAVIFGERDLER-GVVTIRNMYTGSQENVG 413
Query: 645 VNEVASVIK 653
++ V +
Sbjct: 414 LDSVVEHLI 422
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 36.9 bits (85), Expect = 0.019
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 259 EFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTD 305
+ + FR E P L R++ F M E P D
Sbjct: 161 RGPLPKGGLRFDVAADCFRRE--PSKHLDRLQSFRMREYVCIGTPDD 205
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 36.8 bits (86), Expect = 0.022
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 553 ALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGK--RYARTDE 610
P +AP++ I+ ++ ++ L+ +LS GI K D IG R
Sbjct: 532 FFPTWLAPVQVVIMNITD--SQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRR 589
Query: 611 IAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKD 654
+P+ + D E V +R R + VNEV ++
Sbjct: 590 --VPYMLVCG-DKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQ 630
Score = 32.1 bits (74), Expect = 0.63
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 260 FNSGR-----LPFAAAQIGNAFRNEIS-PRSGLIRVREFTM--AEIEHFCDP 303
FN G LP A+ G+ RNE S GL+RVR FT A I FC
Sbjct: 341 FNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI--FCTE 390
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 36.1 bits (84), Expect = 0.035
Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 23/148 (15%)
Query: 509 TKTFHVEEIIPSV-IEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILP 567
T+ IP FG I+ L E LP + + ++P
Sbjct: 324 LTTYGSPTPIPCAGF--GFGDCVIVELLQEKR-------------LLPDIPHVVDDVVIP 368
Query: 568 LSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGK--RYARTDEIAIPFGITIDFDTLK 625
+ +P + L G S + + + YA D + + + + +
Sbjct: 369 F--DESMRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYA--DRVGAVRAVLVAPEEWE 424
Query: 626 EPHSVTLRERDSMTQVRVKVNEVASVIK 653
V ++ T E +
Sbjct: 425 R-GEVQVKMLREGTGKEEGGAERGFAVP 451
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 33.3 bits (77), Expect = 0.29
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 265 LPFAAAQIGNAFRNEIS-PRSGLIRVREFTM--AEIEHFCDP 303
LP A++G R E S SGL RVR T+ + I F P
Sbjct: 353 LPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI--FVRP 392
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 32.4 bits (74), Expect = 0.50
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 9/64 (14%)
Query: 350 NETLGYFMARIQKF-------MISVGIDPEKLRFRQ--HMGNEMAHYACDCWDAECLTSY 400
N + + +I++ + GI+ + RF Y D ++
Sbjct: 87 NLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTI 146
Query: 401 GWVE 404
V+
Sbjct: 147 SRVK 150
>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing
enzyme subgroup, alpha/beta barrel, structural genomics,
isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1
Length = 324
Score = 31.1 bits (71), Expect = 1.2
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 339 IGEAVRSNLVANETLGYFMARIQKFM--ISVGIDPEKLRFRQHMGNEMAHYACDC--WDA 394
GE E+ MA+I + + G+ E ++ + A A DC WD
Sbjct: 45 TGECT-PYPRYGESDASVMAQIMSVVPQLEKGLTRE--ELQKILPAGAARNALDCALWDL 101
Query: 395 EC 396
Sbjct: 102 AA 103
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 30.6 bits (70), Expect = 1.6
Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 18/130 (13%)
Query: 526 FGIG--RIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSS 583
F + R++ AL E + L I+ + + L +
Sbjct: 306 FALSIERLLLALEEEG-------------IELDIEENLDLFIVTMGDQADRYAV--KLLN 350
Query: 584 ELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRV 643
L NGI D I + + D + F I I L+ + + ++ + +
Sbjct: 351 HLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELEN-NKIDVKNMTTGESETI 409
Query: 644 KVNEVASVIK 653
+++ + K
Sbjct: 410 ELDALVEYFK 419
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Length = 443
Score = 30.6 bits (70), Expect = 1.8
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 573 EFQPFIKM------LSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPF 615
+ +PF L EL +G + + D GG +G Y + P
Sbjct: 228 DLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYRTPNTPPPPP 276
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.9
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 21/42 (50%)
Query: 5 KVEAEL---APLRAAVKEQGDIVRALKAEGAPELDVKKAVAE 43
K++A L A + AP L + KA E
Sbjct: 24 KLQASLKLYAD-----------------DSAPALAI-KATME 47
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 30.0 bits (67), Expect = 2.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 13 LRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRK 48
L ++ QG++VR+LKA A + ++ AV L K
Sbjct: 12 LFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLK 47
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl
ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A
{Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Length = 460
Score = 29.9 bits (68), Expect = 2.8
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 260 FNSGR-----LPFAAAQIGNAFRNEIS-PRSGLIRVREFTM--AEIEHFCDP 303
F LP + RNE S SGL R+R+F I FC P
Sbjct: 138 FGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI--FCTP 187
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 29.5 bits (67), Expect = 4.2
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 356 FMARIQKFMISVGIDPEKLRFR------QHMGNEMAHYACDCWDAECLTSYGWVECVGCA 409
+ R+ + GIDP + + + +E + + S+G E G
Sbjct: 188 YAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPG 247
Query: 410 DRSAYDLTQHFKATGVRLSAEKHLPE---PQTREIVEP 444
A++ + G+ + +L E P+T E V
Sbjct: 248 --VAFECQEQ---NGMHFWEDCYLVEIIDPETGEPVPE 280
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 28.8 bits (65), Expect = 6.2
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 16/83 (19%)
Query: 242 LRPE-TAQGIFVNFKRLL--EFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIE 298
LRP+ TA RL+ P A N +R + ++ + EF +E
Sbjct: 81 LRPDMTAP-----IARLVASSLKDRAYPLRLAYQSNVYRAQ---QNEGGKPAEFEQLGVE 132
Query: 299 HFCDPTDKSHAKFSDVETTQMMV 321
D T +D E +M+
Sbjct: 133 LIGDGT-----ASADGEVIALMI 150
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 27.9 bits (63), Expect = 7.7
Identities = 4/27 (14%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 183 EECADIVIKLDGMSKNEM-DDVLKKYN 208
E+ A+ ++ ++ + +E+ ++ K
Sbjct: 139 EQKANFILNIENKNIDELLSEIKKVIK 165
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 28.3 bits (63), Expect = 8.6
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 346 NLVANETLGYFMARIQKFMISVGIDPEKLRF-RQHMGNEMAHYACDCWDAECLTSYGWVE 404
++ L YF ++K + +G DP+K+ F E Y ++ +
Sbjct: 88 EVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYW---QTVIDISKNVTLS 144
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 9.7
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 4 PKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKV 50
P+++ A LR + E ++ +A+ E A E V + +V
Sbjct: 735 PELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQV 781
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.388
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,397,133
Number of extensions: 655969
Number of successful extensions: 1514
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1468
Number of HSP's successfully gapped: 70
Length of query: 679
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 579
Effective length of database: 3,909,693
Effective search space: 2263712247
Effective search space used: 2263712247
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)