RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17941
(679 letters)
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 394
Score = 340 bits (874), Expect = e-112
Identities = 127/397 (31%), Positives = 176/397 (44%), Gaps = 53/397 (13%)
Query: 63 SSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLE-EQM 121
SS D ++ L KRR F QS IYGG+ G YD+GP+G LK N+ AW + V E + M
Sbjct: 3 SSLD--ELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDM 60
Query: 122 LEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSV 181
+D S+LT VL SGH FAD MV + T + +RLDHL+K E++ V
Sbjct: 61 EGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEV 120
Query: 182 KEECADIVIKLDGMSKNEMDDVLKKYNIKSPLT--KNDLSEPMEFNLMFATQIGPSGL-- 237
+EE +++ + + + P + D + P FN+MF GP G
Sbjct: 121 EEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRG 180
Query: 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEI 297
+ YLRPETAQGIFVNFK +L+ S +L F AQIG AFRNEI+PR+ + RVREF EI
Sbjct: 181 LLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEI 240
Query: 298 EHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFM 357
E+F P + Y++
Sbjct: 241 EYFVRPGED-------------------------------------------EYWHRYWV 257
Query: 358 ARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLT 417
K+ +G+ E L Q AHYA D +G +E G A R+ +DL
Sbjct: 258 EERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLG 317
Query: 418 QHFKATGVRLSAEKHLPEPQTRE---IVEPVLNKGII 451
H K + L + + +P K +
Sbjct: 318 SHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFV 354
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 181 bits (459), Expect = 2e-52
Identities = 48/369 (13%), Positives = 88/369 (23%), Gaps = 118/369 (31%)
Query: 69 KMEDLLKRRFFY---DQSFSIYGGISGQY-DFGPMGCALKTNMLSAWRQFFVLEEQMLEV 124
+ DL +RR F Q S +SG + FGP+G L+ N+ S W V+ + +
Sbjct: 2 ALVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVFREQV-- 59
Query: 125 DCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEE 184
S H + + +
Sbjct: 60 ---------FAVDSLHQEPGSSQPR----------------------------------D 76
Query: 185 CADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRP 244
A ++ + + + D E + F + + G LR
Sbjct: 77 SAFRLVSPESIREILQDRE----------------PSKEQLVAFLENLLKT---SGKLRA 117
Query: 245 ETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNE---ISPRSGLIRVREFTMAEIEHFC 301
G ++ L+ + +LPF AQIG F S + RV E T A + F
Sbjct: 118 TLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFT 177
Query: 302 DPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQ 361
++ L +++
Sbjct: 178 PTRTS-------------------------------------------SQWLDFWLRHRL 194
Query: 362 KFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFK 421
+ + P +G + +L +
Sbjct: 195 LWWRKFAMSPSNFSSADC----QDELGRKGSKLYYSFPWGKEPIETLWNLGDQELLHTYP 250
Query: 422 ATGVRLSAE 430
+
Sbjct: 251 GNVSTIQGR 259
Score = 43.9 bits (103), Expect = 3e-05
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 515 EEIIPSVIEPSFGIGRIMYALFEHNFKM 542
+ ++P V+ S + A +F++
Sbjct: 263 KNVVPCVLSVSGDVDLGTLAYLYDSFQL 290
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 331
Score = 116 bits (292), Expect = 3e-29
Identities = 72/241 (29%), Positives = 97/241 (40%), Gaps = 48/241 (19%)
Query: 216 NDLSEPMEFNLMFATQIGPSGLIKG--YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIG 273
+ P FN+MF GP G YLRPETAQGIFVNFK +L+ S +L F AQIG
Sbjct: 94 RYWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIG 153
Query: 274 NAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKP 333
AFRNEI+PR+ + RVREF EIE+F P + +
Sbjct: 154 KAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHR---------------------- 191
Query: 334 AERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWD 393
Y++ K+ +G+ E L Q AHYA D
Sbjct: 192 ---------------------YWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVD 230
Query: 394 AECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTRE---IVEPVLNKGI 450
+G +E G A R+ +DL H K + L + + +P K
Sbjct: 231 ILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWF 290
Query: 451 I 451
+
Sbjct: 291 V 291
Score = 98.3 bits (244), Expect = 5e-23
Identities = 42/92 (45%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 63 SSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVL-EEQM 121
SS D ++ L KRR F QS IYGG+ G YD+GP+G LK N+ AW + V + M
Sbjct: 3 SSLD--ELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDM 60
Query: 122 LEVDCSILTLEPVLKASGHVDRFADLMVKDLK 153
+D S+LT VL SGH FAD MV + K
Sbjct: 61 EGLDASVLTHRLVLHYSGHEATFADPMVDNAK 92
Score = 67.5 bits (164), Expect = 1e-12
Identities = 44/304 (14%), Positives = 78/304 (25%), Gaps = 25/304 (8%)
Query: 255 KRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDV 314
+R + A+ + + S A+ ++ P +
Sbjct: 51 RRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFN----MMF 106
Query: 315 ETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKL 374
+ + + + LG+ +A+I K + +
Sbjct: 107 QDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFI 166
Query: 375 RFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLP 434
+ Y + E Y E Q + L + P
Sbjct: 167 FRVREFEQMEIEYFVRPGEDEYWHRYWVEER--------LKWWQEMGLSRENLVPYQQPP 218
Query: 435 EPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDK 494
E V DL S + +E+L + V
Sbjct: 219 ESSAHYAKATVDIL--YRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITAR----VLRN 272
Query: 495 EFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRD--GDEQRTYL 552
E T+ + T + +P VIEPS G+ R + AL F + E+R L
Sbjct: 273 EHS-TQRLAYRDPETG----KWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVL 327
Query: 553 ALPP 556
L P
Sbjct: 328 KLKP 331
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, C-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 127
Score = 73.5 bits (180), Expect = 3e-16
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 549 RTYLALPPLVAPLKASILPLSSN-PEFQPFIKMLSSELSQNGISFKV---DDSGGSIGKR 604
R L L P +AP+K ++ E + + L +EL +NGIS + S+ +
Sbjct: 1 RKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQL 60
Query: 605 YARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDL 655
+++ DE+++ F + + T E + LR RD+ + + ++++ +
Sbjct: 61 HSKYDEMSVLFSVLVTETT-LENGLIQLRSRDTTMKEMMHISKLRDFLVKY 110
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 111
Score = 64.7 bits (157), Expect = 2e-13
Identities = 37/113 (32%), Positives = 66/113 (58%), Gaps = 13/113 (11%)
Query: 559 APLKASILPLSSN-PEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGI 617
AP+K +++PL N PE + K L + L G+ + + G+IGK Y R DE+ PF +
Sbjct: 3 APIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAV 62
Query: 618 TIDFDTLKE--------PHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKITW 662
T+D+DT+ + +VT+R+RD+M Q+R+ V+E+ +++ ++ W
Sbjct: 63 TVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRE----RLRW 111
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS),
C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 113
Score = 59.7 bits (144), Expect = 1e-11
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 553 ALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIA 612
A P +AP + I+P++ + + + L EL G+ +DD +G +
Sbjct: 6 AFPTWLAPKQVQIIPVNVD-LHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQK 64
Query: 613 IPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKD 654
IP+ I + ++ + V +R+ S Q V+ +E + D
Sbjct: 65 IPYQIVVGDKEVEN-NQVNVRQYGSQDQETVEKDEFIWNLVD 105
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 58.0 bits (140), Expect = 3e-11
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 565 ILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTL 624
I+ + + + L + L NGI D I + + D + F I I L
Sbjct: 9 IVTMGD--QADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQEL 66
Query: 625 KEPHSVTLRERDSMTQVRVKVNEVASVIK 653
+ + + ++ + ++++ + K
Sbjct: 67 EN-NKIDVKNMTTGESETIELDALVEYFK 94
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 127
Score = 58.6 bits (141), Expect = 4e-11
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 552 LALPPLVAPLKASILPLS---SNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYART 608
L LPP VA + I+P+ + E + L S L G +DD G++Y
Sbjct: 3 LCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEW 62
Query: 609 DEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDL 655
+ +P + I L E + + RD+ +V + + +++L
Sbjct: 63 EMRGVPLRVEIGPRDL-EKGAAVISRRDTGEKVTADLQGIEETLREL 108
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 110
Score = 57.7 bits (139), Expect = 5e-11
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 555 PPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIP 614
P +AP++ I+ + ++ L+ +LS GI K D IG + +P
Sbjct: 2 PTWLAPVQVVIMNI--TDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVP 59
Query: 615 FGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKD 654
+ + ++ V +R R + VNEV ++
Sbjct: 60 YMLVCGDKEVES-GKVAVRTRRGKDLGSMDVNEVIEKLQQ 98
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 126
Score = 56.3 bits (135), Expect = 2e-10
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 552 LALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKV--DDSGGSIGKRYARTD 609
L LPP+VAP++ I+PL + ++ + F+V DD G+++ +
Sbjct: 3 LILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGKFRVHIDDRDIRPGRKFNDWE 62
Query: 610 EIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDL 655
+P I + + E +TL RD+M + +V ++ V++
Sbjct: 63 IKGVPLRIEVGPKDI-ENKKITLFRRDTMEKFQVDETQLMEVVEKT 107
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase
(EPRS) second repeated element {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 50.5 bits (121), Expect = 5e-09
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 13 LRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDE 53
L V QGD+VR LKA+ AP+ DV AV +L K E
Sbjct: 5 LYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKE 45
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 96
Score = 51.1 bits (122), Expect = 1e-08
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 565 ILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTL 624
++PL+ E L+ L + + + + K + F + D L
Sbjct: 8 LIPLT--EEAVAEAFYLAEAL-RPRLRAEYALAPRKPAKGLEEALKRGAAFAGFLGEDEL 64
Query: 625 KEPHSVTLRERDSMTQVRVKVNEVASVIKDL 655
+ VTL+ + QVR+ EV +
Sbjct: 65 RAGE-VTLKRLATGEQVRLSREEVPGYLLQA 94
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase
(EPRS) second repeated element {Chinese hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 56
Score = 48.5 bits (116), Expect = 3e-08
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 13 LRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDE 53
+ + QG++VR LKAE AP+ V +AV L K E
Sbjct: 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKE 42
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 99
Score = 49.6 bits (118), Expect = 3e-08
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 571 NPEFQPFIKMLSSELSQN--GISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPH 628
+ Q L+ L G+ + GG+ K++AR D+ + + +
Sbjct: 12 GADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEV-ANG 70
Query: 629 SVTLRERDSMTQVRVKVNEVASVIKDL 655
+ +++ S Q V + VA+ ++ L
Sbjct: 71 TAVVKDLRSGEQTAVAQDSVAAHLRTL 97
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic
tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 54
Score = 46.2 bits (110), Expect = 1e-07
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 8 AELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKK 49
A L L ++ QG++VR+LKA A + ++ AV L K
Sbjct: 1 ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKM 42
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 97
Score = 43.8 bits (103), Expect = 3e-06
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 581 LSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQ 640
S +L + G++ V+ + + I F + E VT+R + +Q
Sbjct: 22 YSRKLRERGMNVTVEIMERGLSAQLKYASAIGADFAVIFGERD-LERGVVTIRNMYTGSQ 80
Query: 641 VRVKVNEVASVIKD 654
V ++ V +
Sbjct: 81 ENVGLDSVVEHLIS 94
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain
{Thermus thermophilus [TaxId: 274]}
Length = 127
Score = 42.5 bits (99), Expect = 2e-05
Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Query: 552 LALPPLVAPLKASILPLSSNPEFQP---FIKMLSSELSQNGISFKVDDSGG-SIGKRYAR 607
L LPP +AP++ I+P+ + + + L L G+ +DD + G ++
Sbjct: 3 LVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHE 62
Query: 608 TDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDL 655
+ +PF + + L+ L R + + + + +
Sbjct: 63 WELKGVPFRVELGPKDLEG-GQAVLASRLGGKET-LPLAALPEALPGK 108
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 490
Score = 32.0 bits (72), Expect = 0.26
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 19/76 (25%)
Query: 539 NFKMRDGDEQRTYLALPPLVAPLKASILP--LSSNPEFQPFIKMLSSELSQNGISFKVDD 596
NF R G +LA L A + L L + E+Q ++ +VD
Sbjct: 420 NFPNRLGTGANVFLASAELAA---VAALIGKLPTPEEYQTYVA-------------QVDK 463
Query: 597 SGGSIGKRYARTDEIA 612
+ RY ++++
Sbjct: 464 TAVDT-YRYLNFNQLS 478
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus
thermophilus [TaxId: 274]}
Length = 272
Score = 29.1 bits (64), Expect = 1.5
Identities = 13/73 (17%), Positives = 24/73 (32%)
Query: 87 YGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFAD 146
YG + G P G A+ N+ + F + + + K + HV+ F+
Sbjct: 26 YGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSP 85
Query: 147 LMVKDLKTGECFR 159
+ G
Sbjct: 86 ELAVVTHAGGEEL 98
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS)
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 265
Score = 29.1 bits (64), Expect = 1.6
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 300
LRP + ++ F + + LP Q+ N FR E LIRVRE T + H
Sbjct: 95 ALRPTSETVMYPMFALWV-RSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHT 153
Query: 301 CDPTDKSHAKFSDVETTQMMVLYSACN 327
T + + +++
Sbjct: 154 IHATASEAEEQVERAVEIYKEFFNSLG 180
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 28.5 bits (63), Expect = 2.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 260 FNSGRLPFAAAQIGNAFRNEISPRS-GLIRVREFTMAEIEHFCDPTDKSHAKFSDV 314
+ LP A+ G+ RNE S GL+RVR FT + FC ++ + +
Sbjct: 105 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE-EQIRDEVNGC 159
>gi|150401221|ref|YP_001324987.1|(10-76:78) DNA-directed RNA
polymerase subunit H [Methanococcus aeolicus Nankai-3]
gi|166229324|sp|A6UV53.1|RPOH_META3 RecName:
Full=DNA-directed RNA polymerase subunit H
gi|150013924|gb|ABR56375.1| RNA polymerase Rpb5
[Methanococcus aeolicus Nankai-3] E=2e-17 s/c=1.37
id=62% cov=100%
Length = 67
Score = 25.8 bits (57), Expect = 3.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 195 MSKNEMDDVLKKYNIK 210
+SK E+ +L KY+IK
Sbjct: 6 ISKEEVQKLLAKYDIK 21
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 27.1 bits (60), Expect = 4.2
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 15 AAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKM 70
++ + A+ D+ A+ KL K + E +P +FD K
Sbjct: 74 QDSAVVSSNIKKIVADLKKGKDLSPAINYTKL--KNAVQNESVSSPIELNFDAVKD 127
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 26.6 bits (59), Expect = 4.6
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 17 VKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFDRA 68
K+Q + + ++AE D+KK L+ + ++ + + +L R
Sbjct: 27 AKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRI 78
>d1pgsa1 b.121.1.1 (A:4-140) Peptide:N-glycosidase F, PNGase F
{Flavobacterium meningosepticum [TaxId: 238]}
Length = 137
Score = 26.3 bits (58), Expect = 8.1
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 120 QMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRL 160
+ +++ + E K DR+A++ VK+ TGE + +
Sbjct: 38 KTIKMF---IKNECPNKTCDEWDRYANVYVKNKTTGEWYEI 75
>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating
factor large subunit DdrA {Klebsiella oxytoca [TaxId:
571]}
Length = 241
Score = 26.7 bits (59), Expect = 8.7
Identities = 8/26 (30%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 643 VKVNEVASVIKDLSLAKITWEDVQSK 668
+++NE VI D+++ IT E ++++
Sbjct: 71 IRINEATPVIGDVAMETIT-ETIKAR 95
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 24.7 bits (54), Expect = 9.7
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 195 MSKNEMDDVLKKYNIK 210
+S +E ++LK+Y +K
Sbjct: 13 LSSDEKRELLKRYRLK 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.388
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,494,649
Number of extensions: 121266
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 40
Length of query: 679
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 588
Effective length of database: 1,158,166
Effective search space: 681001608
Effective search space used: 681001608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)