BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17942
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BGD8|COA6_MOUSE Cytochrome c oxidase assembly factor 6 homolog OS=Mus musculus
GN=Coa6 PE=1 SV=1
Length = 79
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 48/75 (64%)
Query: 1 MSFLPKEERTKCWSARDKYWECLDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYHFLK 60
M+ +ER CW ARD YW CLD + +A C++ R+S+E CP QW+K+FD+R +LK
Sbjct: 1 MAAPSMKERQACWGARDLYWRCLDDNAEDAARCQKLRSSFEASCPQQWIKYFDKRRDYLK 60
Query: 61 FKNKIETEGFEKFDS 75
FK K E GF+ S
Sbjct: 61 FKEKFEAGGFQSSQS 75
>sp|Q2M2S5|COA6_BOVIN Cytochrome c oxidase assembly factor 6 homolog OS=Bos taurus
GN=COA6 PE=3 SV=1
Length = 79
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 1 MSFLPKEERTKCWSARDKYWECLDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYHFLK 60
M+ +ER CW ARD+YW+CLD + +A CK+ R+S+E CP QW+K+FD+R +LK
Sbjct: 1 MAAPTMKERQACWGARDEYWKCLDENTEDASKCKKLRSSFESSCPQQWIKYFDKRRDYLK 60
Query: 61 FKNKIETEGFE 71
FK K E F+
Sbjct: 61 FKEKFEAGDFQ 71
>sp|Q5JTJ3|COA6_HUMAN Cytochrome c oxidase assembly factor 6 homolog OS=Homo sapiens
GN=COA6 PE=1 SV=1
Length = 125
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 1 MSFLPKEERTKCWSARDKYWECLDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYHFLK 60
M+ +ER CW ARD+YW+CLD + +A CK+ R+S+E CP QW+K+FD+R +LK
Sbjct: 47 MAAPSMKERQVCWGARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLK 106
Query: 61 FKNKIETEGFE 71
FK K E FE
Sbjct: 107 FKEKFEAGQFE 117
>sp|G2TRP6|COA6_SCHPO Cytochrome c oxidase subunit 6B-like protein new16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=new16 PE=2 SV=1
Length = 90
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 25/90 (27%)
Query: 4 LPKEERTKCWSARDKYWECLDSHE---------GNADSCKEFRTSYEQFCPGQWVKHFDR 54
L + R KCW ARD Y+ CLD H A +C +T++E C WV
Sbjct: 7 LRRSAREKCWEARDAYFGCLDRHSILDGLKDDTKAAQACSAEKTAFETDCVKSWVN---- 62
Query: 55 RYHFLKFK----------NKIETEGFEKFD 74
+FLKF+ K+E +G +K +
Sbjct: 63 --YFLKFRVQQHQQQEAIKKLEAQGAKKLN 90
>sp|Q54P95|COX6B_DICDI Probable cytochrome c oxidase subunit 6B OS=Dictyostelium
discoideum GN=DDB_G0284693 PE=3 SV=1
Length = 78
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 4 LPKEERTK-CWSARDKYWECLDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRR 55
P++ +TK CW+ Y+ C+ + G+ C+ F S CP W+ +D +
Sbjct: 15 FPQQNQTKHCWANYVDYYGCVKHYNGDNSKCQTFFNSMNSLCPAAWISEWDEQ 67
>sp|P56391|CX6B1_MOUSE Cytochrome c oxidase subunit 6B1 OS=Mus musculus GN=Cox6b1 PE=1
SV=2
Length = 86
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 2 SFLPKEERTK-CWSARDKYWEC---LDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYH 57
S P + +TK CW + C + + G+ C+ +R Y+ CP WV +D R
Sbjct: 19 SRFPNQNQTKNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPVSWVSAWDDRIA 78
Query: 58 FLKFKNKI 65
F KI
Sbjct: 79 EGTFPGKI 86
>sp|Q01519|COX12_YEAST Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=COX12 PE=1 SV=2
Length = 83
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 4 LPKEERTK-CWSARDKYWECLDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYHFLKFK 62
P++ +TK CW + Y +C++ + CK F +Y CP W++ +D + F
Sbjct: 18 FPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWDDQREKGIFA 77
Query: 63 NKIETE 68
I ++
Sbjct: 78 GDINSD 83
>sp|O94581|COX12_SCHPO Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2
Length = 86
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 4 LPKEERTK-CWSARDKYWECLDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYHFLKFK 62
P +TK C+ + Y+ C+ + + CK+F +Y+ CP +WV+ +D + F
Sbjct: 24 FPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFP 83
Query: 63 NKI 65
I
Sbjct: 84 API 86
>sp|Q53CG4|CX6B1_MACMU Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta GN=COX6B1 PE=3
SV=3
Length = 87
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 2 SFLPKEERTK-CWSARDKYWEC---LDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYH 57
S P + +T+ CW + C + + GN C+ ++ Y+ CP WV +D +
Sbjct: 20 SRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTDWDEQRA 79
Query: 58 FLKFKNKI 65
F KI
Sbjct: 80 EGTFPGKI 87
>sp|Q4R374|CX6B1_MACFA Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis GN=COX6B1
PE=3 SV=3
Length = 87
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 2 SFLPKEERTK-CWSARDKYWEC---LDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYH 57
S P + +T+ CW + C + + GN C+ ++ Y+ CP WV +D +
Sbjct: 20 SRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTDWDEQRA 79
Query: 58 FLKFKNKI 65
F KI
Sbjct: 80 EGTFPGKI 87
>sp|Q7YRK6|CX6B1_TARSY Cytochrome c oxidase subunit 6B1 OS=Tarsius syrichta GN=COX6B1
PE=3 SV=3
Length = 86
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 2 SFLPKEERTK-CWSARDKYWEC---LDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYH 57
S P + +T+ CW + C + + G+ C+ +R Y+ CP WV +D R
Sbjct: 19 SRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRA 78
Query: 58 FLKFKNKI 65
F KI
Sbjct: 79 EGTFPGKI 86
>sp|P00429|CX6B1_BOVIN Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=COX6B1 PE=1
SV=2
Length = 86
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 2 SFLPKEERTK-CWSARDKYWEC---LDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYH 57
S P + +T+ CW + C + + G+ C+ +R Y+ CP WV +D R
Sbjct: 19 SRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRA 78
Query: 58 FLKFKNKI 65
F KI
Sbjct: 79 EGTFPGKI 86
>sp|Q3E846|COA6_YEAST Cytochrome c oxidase assembly factor 6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=coa6 PE=1
SV=1
Length = 104
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 6 KEERTKCWSARDKYWECLDSHE-------GNADS----CKEFRTSYEQFCPGQWVKHF 52
+ +R CW +RD +++CLD + N+ S CK +E+ C W+K+F
Sbjct: 19 RSQRKLCWESRDAFFQCLDKADILDAMDPKNSKSIKSHCKVENEKFEENCAHSWIKYF 76
>sp|P14854|CX6B1_HUMAN Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1
SV=2
Length = 86
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 2 SFLPKEERTK-CWSARDKYWEC---LDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYH 57
S P + +T+ CW + C + + G+ C+ ++ Y+ CP WV +D +
Sbjct: 19 SRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRA 78
Query: 58 FLKFKNKI 65
F KI
Sbjct: 79 EGTFPGKI 86
>sp|Q5RCT0|CX6B1_PONAB Cytochrome c oxidase subunit 6B1 OS=Pongo abelii GN=COX6B1 PE=3
SV=3
Length = 86
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 2 SFLPKEERTK-CWSARDKYWEC---LDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYH 57
S P + +T+ CW + C + + G+ C+ ++ Y+ CP WV +D +
Sbjct: 19 SRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRA 78
Query: 58 FLKFKNKI 65
F KI
Sbjct: 79 EGTFPGKI 86
>sp|P35952|LDLR_RAT Low-density lipoprotein receptor OS=Rattus norvegicus GN=Ldlr PE=2
SV=1
Length = 879
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 12/46 (26%)
Query: 12 CWSARD------------KYWECLDSHEGNADSCKEFRTSYEQFCP 45
C SARD K ECLD++ G + CK+ + YE CP
Sbjct: 297 CNSARDCRDWSDEPIKECKTNECLDNNGGCSHICKDLKIGYECLCP 342
>sp|Q9SUD3|CX6B3_ARATH Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana
GN=COX6B-3 PE=2 SV=2
Length = 78
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 4 LPKEERTK-CWSARDKYWECLDSHEGNADSCKEFRTSYEQFCPGQWV 49
P +T+ C++ ++ C + +A+ C+ F Y CPG+WV
Sbjct: 16 FPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWV 62
>sp|P35950|LDLR_CRIGR Low-density lipoprotein receptor OS=Cricetulus griseus GN=LDLR PE=3
SV=2
Length = 862
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 21 ECLDSHEGNADSCKEFRTSYEQFCP 45
ECLD++ G + CK+ + YE CP
Sbjct: 318 ECLDNNGGCSHVCKDLKIGYECLCP 342
>sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1
Length = 852
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 3 FLPKEER---TKCWSARDKYWECLDSHEGNADSCKEFRTSYEQFCPG 46
F P ++R T C R + W LD+ A CK+ TS PG
Sbjct: 328 FFPNDDRFIITGCLDHRCRLWSILDNEVSYAFDCKDLITSLTLSPPG 374
>sp|P0CM70|COX23_CRYNJ Cytochrome c oxidase-assembly factor COX23, mitochondrial
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=COX23 PE=3 SV=1
Length = 98
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 12 CWSARDKYWECLDSHEGNADSCKEFRTSYEQFCPGQWVKH 51
C +AR +CL+ + N C +F T+Y++ C G W+
Sbjct: 48 CEAARKASLDCLERTQYNRSECTDFFTAYKE-CKGNWLAQ 86
>sp|P0CM71|COX23_CRYNB Cytochrome c oxidase-assembly factor COX23, mitochondrial
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=COX23 PE=3 SV=1
Length = 98
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 12 CWSARDKYWECLDSHEGNADSCKEFRTSYEQFCPGQWVKH 51
C +AR +CL+ + N C +F T+Y++ C G W+
Sbjct: 48 CEAARKASLDCLERTQYNRSECTDFFTAYKE-CKGNWLAQ 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,841,094
Number of Sequences: 539616
Number of extensions: 1362428
Number of successful extensions: 2794
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2776
Number of HSP's gapped (non-prelim): 28
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)