Query psy17942
Match_columns 90
No_of_seqs 106 out of 363
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 18:16:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_H AED, cytochrome C oxida 100.0 6.1E-32 2.1E-36 176.0 4.3 65 1-65 18-85 (85)
2 2lqt_A Coiled-coil-helix-coile 97.2 0.00028 9.7E-09 45.6 3.7 50 12-62 16-65 (85)
3 2lql_A Coiled-coil-helix-coile 89.0 0.21 7.2E-06 33.1 2.2 39 6-45 55-93 (113)
4 1ei0_A P8MTCP1; helix-turn-hel 87.6 0.51 1.7E-05 25.7 2.8 33 12-44 3-35 (38)
5 1hp8_A HU-P8; leukemia, cystei 77.6 1.6 5.6E-05 26.7 2.5 39 10-49 5-43 (68)
6 2lql_A Coiled-coil-helix-coile 58.9 2.3 7.8E-05 27.9 0.3 51 9-59 12-76 (113)
7 2l3i_A Aoxki4A, antimicrobial 56.2 1.6 5.4E-05 22.5 -0.7 24 43-66 3-26 (30)
8 1vsr_A Protein (VSR endonuclea 17.1 1.1E+02 0.0037 20.3 3.0 30 45-74 63-93 (136)
9 3ix3_A Transcriptional activat 17.0 49 0.0017 21.4 1.2 20 40-59 52-71 (173)
10 2oni_A E3 ubiquitin-protein li 16.3 52 0.0018 25.3 1.3 41 15-55 228-271 (392)
No 1
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=99.97 E-value=6.1e-32 Score=176.03 Aligned_cols=65 Identities=26% Similarity=0.675 Sum_probs=61.4
Q ss_pred CCCCChHHHHHHHHHhHHHHHH---HhhcCCCccchHHHHHHHHhhCHHHHHHHHHHHHhhhhhHHHH
Q psy17942 1 MSFLPKEERTKCWSARDKYWEC---LDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYHFLKFKNKI 65 (90)
Q Consensus 1 mrfP~~nqrk~Cw~ard~y~~C---l~~~~~~~~~C~~~r~~fes~CP~sWV~~fdekR~~~~f~~kl 65 (90)
.|||++|||++||++||+||+| |+++|++.+.|+.+++.|+++||.+||+|||++|++|+|+++|
T Consensus 18 ~rFPn~nq~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~slCP~sWVe~wdeqR~~g~f~~k~ 85 (85)
T 1v54_H 18 SRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI 85 (85)
T ss_dssp TTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHHHSCHHHHHHHHHHHHHTCCCSCC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcChHHHHHHHHHHHHhCCCCCCC
Confidence 4899999999999999999999 4559999999999999999999999999999999999999864
No 2
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=97.23 E-value=0.00028 Score=45.58 Aligned_cols=50 Identities=22% Similarity=0.391 Sum_probs=47.3
Q ss_pred HHHHhHHHHHHHhhcCCCccchHHHHHHHHhhCHHHHHHHHHHHHhhhhhH
Q psy17942 12 CWSARDKYWECLDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYHFLKFK 62 (90)
Q Consensus 12 Cw~ard~y~~Cl~~~~~~~~~C~~~r~~fes~CP~sWV~~fdekR~~~~f~ 62 (90)
|.++.+.=++||+.|+.+.+.|..+...|. .|-..|.+-=.++|..|+.|
T Consensus 16 C~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk-~CKk~W~~v~~eRRr~Gi~P 65 (85)
T 2lqt_A 16 CLSESDASTRCLDENNYDRERCSTYFLRYK-NCRRFWNSIVMQRRKNGVKP 65 (85)
T ss_dssp CHHHHHHHHHHHHHTTTCTTTTHHHHHHHH-HHHHHHHHHHHHHHTTCCSC
T ss_pred cHHHHHHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999999999998 89999999999999998754
No 3
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=89.00 E-value=0.21 Score=33.06 Aligned_cols=39 Identities=23% Similarity=0.543 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhHHHHHHHhhcCCCccchHHHHHHHHhhCH
Q psy17942 6 KEERTKCWSARDKYWECLDSHEGNADSCKEFRTSYEQFCP 45 (90)
Q Consensus 6 ~nqrk~Cw~ard~y~~Cl~~~~~~~~~C~~~r~~fes~CP 45 (90)
+.=+++|-.-..+|+.||+.|..+...|....+.|. .|.
T Consensus 55 ~~I~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~-~Ca 93 (113)
T 2lql_A 55 RQIRQACAQPFEAFEECLRQNEAAVGNCAEHMRRFL-QCA 93 (113)
T ss_dssp HHHHHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHH-HHH
T ss_pred HHHHHHhHHHHHHHHHHHHHccccHHHHHHHHHHHH-HHH
Confidence 555789999999999999999999999999999887 564
No 4
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=87.61 E-value=0.51 Score=25.66 Aligned_cols=33 Identities=12% Similarity=0.331 Sum_probs=27.4
Q ss_pred HHHHhHHHHHHHhhcCCCccchHHHHHHHHhhC
Q psy17942 12 CWSARDKYWECLDSHEGNADSCKEFRTSYEQFC 44 (90)
Q Consensus 12 Cw~ard~y~~Cl~~~~~~~~~C~~~r~~fes~C 44 (90)
|-..-.+|..||..|+-+.+.|..+-..+..=|
T Consensus 3 C~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 3 CQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp SHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 344556899999999999999999999887544
No 5
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=77.63 E-value=1.6 Score=26.67 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=32.5
Q ss_pred HHHHHHhHHHHHHHhhcCCCccchHHHHHHHHhhCHHHHH
Q psy17942 10 TKCWSARDKYWECLDSHEGNADSCKEFRTSYEQFCPGQWV 49 (90)
Q Consensus 10 k~Cw~ard~y~~Cl~~~~~~~~~C~~~r~~fes~CP~sWV 49 (90)
.-|-..--++..||..|+-+.+.|..+-..+. .|-..|.
T Consensus 5 dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~-eCc~~~~ 43 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQANSYMESKCQAVIQELR-KCCAQYP 43 (68)
T ss_dssp CTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHTTSC
T ss_pred CchHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HHHHHHc
Confidence 44667778999999999999999999999998 4555564
No 6
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=58.89 E-value=2.3 Score=27.95 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=35.7
Q ss_pred HHHHHHHhHHHHHHHhhcCC-Cc----------cchHH---HHHHHHhhCHHHHHHHHHHHHhhh
Q psy17942 9 RTKCWSARDKYWECLDSHEG-NA----------DSCKE---FRTSYEQFCPGQWVKHFDRRYHFL 59 (90)
Q Consensus 9 rk~Cw~ard~y~~Cl~~~~~-~~----------~~C~~---~r~~fes~CP~sWV~~fdekR~~~ 59 (90)
.++|=.-.++|+.|+..+.+ ++ ..|.. +-+.-.+.|...+..||.=.+.+.
T Consensus 12 ak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~CL~~n~ 76 (113)
T 2lql_A 12 ARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEECLRQNE 76 (113)
T ss_dssp --CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHCT
T ss_pred HHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHcc
Confidence 46788999999999977632 34 44532 345566789999999998776663
No 7
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=56.17 E-value=1.6 Score=22.55 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=17.7
Q ss_pred hCHHHHHHHHHHHHhhhhhHHHHH
Q psy17942 43 FCPGQWVKHFDRRYHFLKFKNKIE 66 (90)
Q Consensus 43 ~CP~sWV~~fdekR~~~~f~~kl~ 66 (90)
-||.||.-+=-++|+.....+-|.
T Consensus 3 rcpkswkckafkqrvlkrllamlr 26 (30)
T 2l3i_A 3 RCPKSWKCKAFKQRVLKRLLAMLR 26 (30)
T ss_dssp CSSSCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHHHH
Confidence 499999877667787776666554
No 8
>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli} SCOP: c.52.1.15 PDB: 1odg_A*
Probab=17.08 E-value=1.1e+02 Score=20.32 Aligned_cols=30 Identities=7% Similarity=0.228 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhhhh-HHHHHhcCccccC
Q psy17942 45 PGQWVKHFDRRYHFLKF-KNKIETEGFEKFD 74 (90)
Q Consensus 45 P~sWV~~fdekR~~~~f-~~kl~~eg~~~~~ 74 (90)
..-|.+++++.++.+.- -+.|++.|+.++-
T Consensus 63 ~~~W~~Ki~~n~~rD~~~~~~L~~~Gw~Vlr 93 (136)
T 1vsr_A 63 TEFWLEKIGKNVERDRRDISRLQELGWRVLI 93 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 35699999988887754 4788899998754
No 9
>3ix3_A Transcriptional activator protein LASR; quorum sensing receptor, triphenyl mimics, DNA- binding, quorum sensing; HET: OHN; 1.40A {Pseudomonas aeruginosa} PDB: 3ix4_A* 3ix8_A* 3jpu_A* 2uv0_E*
Probab=17.05 E-value=49 Score=21.38 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.3
Q ss_pred HHhhCHHHHHHHHHHHHhhh
Q psy17942 40 YEQFCPGQWVKHFDRRYHFL 59 (90)
Q Consensus 40 fes~CP~sWV~~fdekR~~~ 59 (90)
..+..|.+|++++.++.-..
T Consensus 52 ~~~nyP~~W~~~Y~~~~y~~ 71 (173)
T 3ix3_A 52 IVGNYPAAWREHYDRAGYAR 71 (173)
T ss_dssp EEECSCHHHHHHHHHTTGGG
T ss_pred EecCCCHHHHHHHHHCcCee
Confidence 35688999999999987663
No 10
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=16.34 E-value=52 Score=25.26 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=30.6
Q ss_pred HhHHHHHHHhh---cCCCccchHHHHHHHHhhCHHHHHHHHHHH
Q psy17942 15 ARDKYWECLDS---HEGNADSCKEFRTSYEQFCPGQWVKHFDRR 55 (90)
Q Consensus 15 ard~y~~Cl~~---~~~~~~~C~~~r~~fes~CP~sWV~~fdek 55 (90)
++.+|-.-+-. +.........|++.|.+.+|.+|+.-|+..
T Consensus 228 N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ 271 (392)
T 2oni_A 228 NKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDEN 271 (392)
T ss_dssp THHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccHHhhhcCCHH
Confidence 44555444332 256678999999999999999999988644
Done!