RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17942
         (90 letters)



>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET:
          FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos
          taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H*
          1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H*
          2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H*
          3abm_H* 3ag1_H* 3ag2_H* ...
          Length = 85

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 3  FLPKEERTKCWSARDKYWEC---LDSHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYHFL 59
          F  + +   CW     +  C   + +  G+   C+ +R  Y+  CP  WV  +D R    
Sbjct: 20 FPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEG 79

Query: 60 KFKNKI 65
           F  KI
Sbjct: 80 TFPGKI 85


>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold,
           electron transport; NMR {Escherichia coli} PDB: 2hnb_A
          Length = 147

 Score = 26.0 bits (58), Expect = 1.3
 Identities = 3/18 (16%), Positives = 6/18 (33%), Gaps = 2/18 (11%)

Query: 38  TSYEQFCPGQWVKHFDRR 55
             Y+ FC    +   +  
Sbjct: 93  REYDTFC--GAIDKLEAE 108


>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component;
           electron transport; HET: FMN; NMR {Escherichia coli}
           SCOP: c.23.5.2
          Length = 167

 Score = 24.5 bits (54), Expect = 5.2
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 38  TSYEQFCPGQWVKHFDRRYHFL 59
           TSYE FC  Q  K FD +   L
Sbjct: 104 TSYEFFC--QSGKDFDSKLAEL 123


>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
           gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
           HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
          Length = 757

 Score = 24.1 bits (52), Expect = 7.7
 Identities = 3/27 (11%), Positives = 7/27 (25%)

Query: 13  WSARDKYWECLDSHEGNADSCKEFRTS 39
           +         L   +    S  +F+  
Sbjct: 147 FQLSPDLITRLFRLQNEYQSAVDFQND 173


>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome;
          4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O
          3izs_O 3u5e_a 3u5i_a 1s1i_V 3jyw_V
          Length = 149

 Score = 23.9 bits (51), Expect = 8.3
 Identities = 10/66 (15%), Positives = 22/66 (33%)

Query: 25 SHEGNADSCKEFRTSYEQFCPGQWVKHFDRRYHFLKFKNKIETEGFEKFDSKQEYELPKG 84
             G A      R + +++ PG + K   R +H  +          +K  +    +    
Sbjct: 30 GGRGMAGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQ 89

Query: 85 KSKAKT 90
            K+ +
Sbjct: 90 YLKSAS 95


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.133    0.436 

Gapped
Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,356,506
Number of extensions: 64021
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 17
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)