BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17945
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48153|RS3_MANSE 40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1
Length = 243
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/116 (76%), Positives = 97/116 (83%), Gaps = 1/116 (0%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV
Sbjct: 128 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 187
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGEIPVASV 116
KIMLPWD GK GPKKP PD++ V EPK+E P P+S + A L + PVA+V
Sbjct: 188 KIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPTSDIRSLAPAPLPQ-PVAAV 242
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD GK GPKKP PD++ V EPK+E P P
Sbjct: 182 VLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEP 223
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1
Length = 245
Score = 177 bits (449), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 91/99 (91%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIMLPWD +GK GPKKPLPD+V+++EPKEE+ PT P S+
Sbjct: 187 KIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTPVSE 225
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPKEE+ P P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTP 222
>sp|P02350|RS31_XENLA 40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-a PE=2 SV=2
Length = 246
Score = 177 bits (448), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 91/99 (91%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIMLPWD +GK GPKKPLPD+V+++EPK+E+ PT P S+
Sbjct: 187 KIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISE 225
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTP 222
>sp|P47835|RS32_XENLA 40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-b PE=2 SV=1
Length = 246
Score = 176 bits (447), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 91/99 (91%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIMLPWD +GK GPKKPLPD+V+++EPK+E+ PT P S+
Sbjct: 187 KIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISE 225
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTP 222
>sp|Q0Z8U2|RS3_PIG 40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1
Length = 243
Score = 176 bits (446), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 91/99 (91%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S+
Sbjct: 187 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2
Length = 243
Score = 176 bits (446), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 91/99 (91%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S+
Sbjct: 187 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>sp|Q3T169|RS3_BOVIN 40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1
Length = 243
Score = 176 bits (446), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 91/99 (91%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S+
Sbjct: 187 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>sp|Q5R465|RS3_PONAB 40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1
Length = 243
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 91/99 (91%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S+
Sbjct: 187 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>sp|Q06559|RS3_DROME 40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1
SV=1
Length = 246
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/117 (75%), Positives = 94/117 (80%), Gaps = 4/117 (3%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKV
Sbjct: 129 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKV 188
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVL----DKPLAKLGEIPV 113
K+MLP+D K GPKKPLPDNV+V+EPKEE P ++ KPL L E V
Sbjct: 189 KVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPPSKPLDDLSEAKV 245
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 32/36 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEE 151
VLGIKVK+MLP+D K GPKKPLPDNV+V+EPKEE
Sbjct: 183 VLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEE 218
>sp|P62909|RS3_RAT 40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=1 SV=1
Length = 243
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 91/99 (91%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIMLPWD +GK GPKKPLPD+V+++EPK+E+ PT P S+
Sbjct: 187 KIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>sp|P62908|RS3_MOUSE 40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1
Length = 243
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 91/99 (91%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIMLPWD +GK GPKKPLPD+V+++EPK+E+ PT P S+
Sbjct: 187 KIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>sp|E2RH47|RS3_CANFA 40S ribosomal protein S3 OS=Canis familiaris GN=RPS3 PE=1 SV=1
Length = 243
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 91/99 (91%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIMLPWD +GK GPKKPLPD+V+++EPK+E+ PT P S+
Sbjct: 187 KIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>sp|P79891|RS3_AMBME 40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1
Length = 253
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 90/99 (90%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESG+KGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIML WD +GK GPKKPLPD+V+++EPK+E+ PT P S+
Sbjct: 187 KIMLAWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 36/42 (85%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIML WD +GK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=3
SV=1
Length = 247
Score = 153 bits (386), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 70/99 (70%), Positives = 82/99 (82%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ A RHV LRQGV+GIKV
Sbjct: 129 MESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKV 188
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIMLP+D G+ GP+ LPD+V ++EP+EEV P P SQ
Sbjct: 189 KIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQ 227
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFPQKK 160
V+GIKVKIMLP+D G+ GP+ LPD+V ++EP+EEV P P +
Sbjct: 183 VIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQ 227
>sp|Q9SIP7|RS31_ARATH 40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=1
SV=1
Length = 250
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/116 (60%), Positives = 85/116 (73%), Gaps = 2/116 (1%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEV+VSGKLR RAKSMKF DG M+ SG P +Y++ A RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGEIPVASV 116
KIML WD TGK+GPK PLPD V + PK++V + P+ P+ + E P+ +V
Sbjct: 187 KIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAA--APVTLVQEAPLTTV 240
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 33/44 (75%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFPQK 159
VLGIKVKIML WD TGK+GPK PLPD V + PK++V + P +
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQ 224
>sp|Q9M339|RS32_ARATH 40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1
SV=1
Length = 249
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 72/90 (80%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEV+VSGKLR RAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEE 90
K+ML WD G +GPK PLPD V + PKEE
Sbjct: 187 KVMLDWDPKGISGPKTPLPDVVIIHSPKEE 216
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 27/36 (75%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEE 151
VLGIKVK+ML WD G +GPK PLPD V + PKEE
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEE 216
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rps3 PE=1 SV=1
Length = 249
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 82/105 (78%), Gaps = 4/105 (3%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
ME+GAKGCEVV+SGKLR RAKSMKF DG MIHSG P D++++ATRHVLLRQGVLG+KV
Sbjct: 129 MEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKV 188
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPL 105
KIMLP KT KK LPD V VL+PKEE T P + V+++P+
Sbjct: 189 KIMLPEP---KTRQKKSLPDIVVVLDPKEEEPITKPYT-VINQPV 229
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEE 151
VLG+KVKIMLP KT KK LPD V VL+PKEE
Sbjct: 183 VLGVKVKIMLPEP---KTRQKKSLPDIVVVLDPKEE 215
>sp|P05750|RS3_YEAST 40S ribosomal protein S3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS3 PE=1 SV=5
Length = 240
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 75/91 (82%), Gaps = 4/91 (4%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLR RAK+MKF DG +IHSG P ND+++TATRHVL+RQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKV 186
Query: 61 KIML-PWDSTGKTGPKKPLPDNVNVLEPKEE 90
KIM P S +TGP K LPD V ++EPKEE
Sbjct: 187 KIMRDPAKS--RTGP-KALPDAVTIIEPKEE 214
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 27/37 (72%), Gaps = 4/37 (10%)
Query: 116 VLGIKVKIML-PWDSTGKTGPKKPLPDNVNVLEPKEE 151
VLGIKVKIM P S +TGPK LPD V ++EPKEE
Sbjct: 181 VLGIKVKIMRDPAKS--RTGPK-ALPDAVTIIEPKEE 214
>sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1
SV=1
Length = 248
Score = 133 bits (335), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 77/103 (74%), Gaps = 1/103 (0%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEV+VSGKLR RAKSMKF DG M+ SG P +Y++ A RHVLLRQGVLG+KV
Sbjct: 127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDK 103
KIML WD GK GP PLPD V + PKE+ + I +QV+ +
Sbjct: 187 KIMLDWDPKGKQGPMTPLPDVVIIHTPKED-DVYIAPAQVVTQ 228
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 26/36 (72%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEE 151
VLG+KVKIML WD GK GP PLPD V + PKE+
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKED 216
>sp|Q8SQM3|RS3_ENCCU 40S ribosomal protein S3 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS3 PE=1 SV=1
Length = 228
Score = 117 bits (292), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 66/85 (77%)
Query: 5 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 64
A+GC+++VSGKL+GQRAKS+KF DG++IHSGD DY+NT V +QGV+GI+V+IML
Sbjct: 142 AQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIML 201
Query: 65 PWDSTGKTGPKKPLPDNVNVLEPKE 89
P+D G GP PLPD + +LEP E
Sbjct: 202 PYDPEGVLGPNYPLPDRITILEPSE 226
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKE 150
V+GI+V+IMLP+D G GP PLPD + +LEP E
Sbjct: 192 VIGIQVRIMLPYDPEGVLGPNYPLPDRITILEPSE 226
>sp|P90526|RS3_DICDI 40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=1
SV=1
Length = 218
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M GAKGCEV+VSGKLR QRAKSMKF DG MI SG P D+++ A RHVLLRQG LG+KV
Sbjct: 130 MTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRHVLLRQGTLGVKV 189
Query: 61 KIMLPWDSTGKT--GPKKPLPDNV 82
IMLP+D T K P PD V
Sbjct: 190 AIMLPYDETRKIHGACNIPQPDVV 213
>sp|Q46GA1|RS3_METBF 30S ribosomal protein S3 OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=rps3 PE=3 SV=1
Length = 311
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 11/115 (9%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA GCEVV+SGKL G R++ KFVDG + HSG+P ++ V+ + + G LG KV
Sbjct: 121 MNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVDEGFAVAIKKLGTLGCKV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGEIPVAS 115
+I+ P LPD+ EP E V T P + +KP AK E PV +
Sbjct: 181 RIIQPGVV---------LPDSYTTTEPSEPV--TEPVEKPAEKPAAKPAEKPVEA 224
>sp|A4FWB6|RS3_METM5 30S ribosomal protein S3 OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rps3 PE=3 SV=1
Length = 211
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 10/100 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M SGAKG ++VSGKL G+R+++ KF+DG M H G+P VN + + L+ GV+G+ V
Sbjct: 120 MGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTV 179
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPK-EEVNPTIPSSQ 99
KIM P D T LPD + +L + +EV +SQ
Sbjct: 180 KIMKP-DVT--------LPDEITILSGEIKEVTEYSEASQ 210
>sp|A6VGZ0|RS3_METM7 30S ribosomal protein S3 OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rps3 PE=3 SV=1
Length = 211
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 10/100 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M SGAKG ++VSGKL G+R+++ KF+DG M H G+P VN + + L+ GV+G+ V
Sbjct: 120 MGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTV 179
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPK-EEVNPTIPSSQ 99
KIM P S LPD + +L + +EV +SQ
Sbjct: 180 KIMKPDVS---------LPDEITILSGEIKEVTEYSEASQ 210
>sp|A9A9Q9|RS3_METM6 30S ribosomal protein S3 OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rps3 PE=3 SV=1
Length = 211
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 10/100 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M SGAKG ++VSGKL G+R+++ KF+DG M H G+P VN + + L+ GV+G+ V
Sbjct: 120 MGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTV 179
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPK-EEVNPTIPSSQ 99
KIM P S LPD + +L + +EV +SQ
Sbjct: 180 KIMKPDVS---------LPDEITILSGEIKEVTEYSEASQ 210
>sp|A3CT03|RS3_METMJ 30S ribosomal protein S3 OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rps3 PE=3 SV=1
Length = 234
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGA GCEV+V+GKL G R+++ KF +G + H G+P V + + G +G++V
Sbjct: 121 MESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP 96
KI +P P LPD +VLEP+ + P P
Sbjct: 181 KI-VP--------PDARLPDAFDVLEPEPKKAPAEP 207
>sp|A7I5P5|RS3_METB6 30S ribosomal protein S3 OS=Methanoregula boonei (strain 6A8)
GN=rps3 PE=3 SV=1
Length = 231
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 57/91 (62%), Gaps = 9/91 (9%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M+SGA GCEVV++GKL G RA++ KF +G + H G+P N V + + GV+G++V
Sbjct: 121 MDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEV 91
KI +P D+ +PD+ ++E ++++
Sbjct: 181 KI-VPADA--------KMPDHFAIIEQEKKL 202
>sp|Q6LXE7|RS3_METMP 30S ribosomal protein S3 OS=Methanococcus maripaludis (strain S2 /
LL) GN=rps3 PE=3 SV=1
Length = 211
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M SGAKG ++VSGKL G+R+++ KF+DG M H G+P VN + + L+ G++G+ V
Sbjct: 120 MGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTV 179
Query: 61 KIMLP 65
KIM P
Sbjct: 180 KIMRP 184
>sp|O28360|RS3_ARCFU 30S ribosomal protein S3 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps3 PE=3 SV=1
Length = 229
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 9/84 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
ME+GAKGCE+ +SGKL +RA++ KFV G ++H+GDP V + + GVLG+ V
Sbjct: 120 MEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSV 179
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNV 84
+I +P D T LPD V
Sbjct: 180 RI-IPPDVT--------LPDEFEV 194
>sp|Q8PV44|RS3_METMA 30S ribosomal protein S3 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps3 PE=3 SV=1
Length = 307
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA GCEVV+SGKL G R++ KFVDG + HSG P + V+ + + G LG KV
Sbjct: 121 MNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKLGTLGCKV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPT-IPSSQVLDKP 104
+I+ P LPD+ V E E P P+ + ++KP
Sbjct: 181 RIIQ---------PGVVLPDSYKVRESVEIEEPAEKPAEKQVEKP 216
>sp|B6YSL9|RS3_THEON 30S ribosomal protein S3 OS=Thermococcus onnurineus (strain NA1)
GN=rps3 PE=3 SV=1
Length = 208
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 12/95 (12%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA+G E+ +SGKL G+RAKS++F G + G+P V+ LL+ GV+G+KV
Sbjct: 121 MRNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLE---PKEEVN 92
IM P P LPD + V+E +EEV+
Sbjct: 181 SIM-P--------PDAKLPDEIEVIEKPIQEEEVS 206
>sp|C6A165|RS3_THESM 30S ribosomal protein S3 OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=rps3 PE=3 SV=1
Length = 207
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 11/94 (11%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA+G E+ +SGKL G+RAKS++F G + G+P V+ LL+ GVLG+KV
Sbjct: 121 MSNGARGVEIRISGKLTGERAKSVRFYQGYIAKVGNPAETLVSRGYAQALLKLGVLGVKV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEP--KEEVN 92
IM P D+ LPD + ++E +EEV+
Sbjct: 181 SIM-PPDAR--------LPDEIEIVEKPIEEEVS 205
>sp|A6UQ49|RS3_METVS 30S ribosomal protein S3 OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rps3 PE=3 SV=1
Length = 211
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 9/85 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GAKG +++SGKL G+R+++ KF+DG M H G+P + V + + L+ G++G+ V
Sbjct: 120 MAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEELVIKSHQLAKLKLGIVGVTV 179
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVL 85
KIM P S LPD + +L
Sbjct: 180 KIMRPDVS---------LPDEIIIL 195
>sp|Q2FT39|RS3_METHJ 30S ribosomal protein S3 OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rps3 PE=3 SV=1
Length = 237
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 9/84 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M+SGA GCEVV+SGKL G R + KF +G + HSGDP N V+ + + GV+G++V
Sbjct: 121 MDSGALGCEVVISGKLTGARGRVQKFTEGYIKHSGDPVNTLVDKGYAVAIKKLGVIGVQV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNV 84
+ ++P P LPD+ V
Sbjct: 181 R-LIP--------PGAQLPDHFEV 195
>sp|Q9V1U1|RS3_PYRAB 30S ribosomal protein S3 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rps3 PE=3 SV=1
Length = 210
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 10/91 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA+G E+ +SGKL G+RAKS++F G + G+P V+ LL+ GV+G+KV
Sbjct: 121 MSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLE-PKEE 90
IM P D+ LPD + ++E P EE
Sbjct: 181 AIM-PPDAR--------LPDEIEIIEKPVEE 202
>sp|O59424|RS3_PYRHO 30S ribosomal protein S3 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps3 PE=3 SV=1
Length = 210
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 10/91 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA+G E+ +SGKL G+RAKS++F G + G+P V+ LL+ GV+G+KV
Sbjct: 121 MNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLE-PKEE 90
IM P D+ LPD + ++E P EE
Sbjct: 181 AIM-PPDAR--------LPDEIEIVEKPAEE 202
>sp|A2SPK9|RS3_METLZ 30S ribosomal protein S3 OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps3 PE=3 SV=1
Length = 231
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M+SGA GCEV+++GKL G RA+ KFV+G + HSG+P V + + G++G++V
Sbjct: 121 MDSGALGCEVIIAGKLTGARARVQKFVEGYIKHSGEPSESIVEKGYATAIKKLGIIGVQV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKL 108
KI+ P G K LPD + + + + ++ A+L
Sbjct: 181 KIVPP-------GAK--LPDQFEIRADAAPAPARVVETDIFEEFDAEL 219
>sp|A1RXG6|RS3_THEPD 30S ribosomal protein S3 OS=Thermofilum pendens (strain Hrk 5)
GN=rps3 PE=3 SV=2
Length = 202
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA+G E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL+ G+ G+KV
Sbjct: 122 MAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKV 181
Query: 61 KIMLP 65
+IM P
Sbjct: 182 RIMKP 186
>sp|Q8U004|RS3_PYRFU 30S ribosomal protein S3 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rps3 PE=1 SV=1
Length = 210
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA+G E+ +SGKL G+RAKS++F G + G+P V+ LL+ GV+G+KV
Sbjct: 121 MNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLE-PKEE 90
IM P LPD + ++E P EE
Sbjct: 181 AIMPPGAR---------LPDEIEIIEKPVEE 202
>sp|Q2NFW2|RS3_METST 30S ribosomal protein S3 OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rps3 PE=3 SV=1
Length = 252
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA+G EV +SGK+RG R+ KF +G + G+P YV V L+ GVLGI V
Sbjct: 120 MSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLKPGVLGIYV 179
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPK 88
+IM P+ LPDN+ + EP+
Sbjct: 180 RIM---------PPEVTLPDNIEISEPE 198
>sp|Q8TRU1|RS3_METAC 30S ribosomal protein S3 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=rps3 PE=3 SV=1
Length = 318
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA GCEVV+SGKL G R++ KFVDG + HSG+P + V+ + + G LG KV
Sbjct: 121 MNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKE 89
+I+ P LPD+ V E E
Sbjct: 181 RIIQ---------PGVVLPDSYKVRESVE 200
>sp|O26116|RS3_METTH 30S ribosomal protein S3 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rps3 PE=3 SV=1
Length = 258
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA+G EV +SGK+RG R+ + KF DG + G+P +V V L+ GVLG+ V
Sbjct: 120 MAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYV 179
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
+IM P D LPD V + +P+ P +S+
Sbjct: 180 RIM-PPDVV--------LPDKVEIEDPRVTETPAEEASE 209
>sp|Q0W1Y3|RS3_UNCMA 30S ribosomal protein S3 OS=Uncultured methanogenic archaeon RC-I
GN=rps3 PE=3 SV=1
Length = 279
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M+SGA GCEV+++GKL G R + KF+ G + H G P + V+ + G++G+KV
Sbjct: 121 MDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNV 84
+IM P P+ LPD + +
Sbjct: 181 RIM-P--------PEAVLPDQITI 195
>sp|A5UL83|RS3_METS3 30S ribosomal protein S3 OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=rps3 PE=3 SV=1
Length = 250
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA+G EV +SGK+RG R+ KFV+G + G+P V V L+ GVLGI V
Sbjct: 120 MGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEPSIRLVEEGFATVQLKPGVLGIYV 179
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPK 88
+IM P P+ LPD+V +L PK
Sbjct: 180 RIM-P--------PETVLPDSVEILPPK 198
>sp|A6UWU3|RS3_META3 30S ribosomal protein S3 OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=rps3 PE=3 SV=1
Length = 208
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M GAKG V+VSGKL G+R+++ K+++G M H G+P + V+ + L+ GV+G+ V
Sbjct: 120 MAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVDQCHKIAKLKLGVVGVTV 179
Query: 61 KIMLP 65
KIM P
Sbjct: 180 KIMPP 184
>sp|C5A280|RS3_THEGJ 30S ribosomal protein S3 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rps3 PE=3 SV=1
Length = 209
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA+G E+ +SGKL G+RAKS++F G + G+P V+ LL+ GV+G+KV
Sbjct: 121 MRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
Query: 61 KIMLP 65
IM P
Sbjct: 181 AIMPP 185
>sp|Q3IMY2|RS3_NATPD 30S ribosomal protein S3 OS=Natronomonas pharaonis (strain DSM 2160
/ ATCC 35678) GN=rps3 PE=3 SV=1
Length = 305
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGA G E+++SGK+ G R++ KF G + H+G+P V++ +++ G +G++V
Sbjct: 121 MESGALGAEIILSGKVTGARSRVEKFNRGYIKHNGEPAESIVDSGVGTAVMKLGTIGVQV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKE 89
KI +P P+ LPD+ V E E
Sbjct: 181 KI-IP--------PEAELPDDFEVYEDIE 200
>sp|P54034|RS3_METJA 30S ribosomal protein S3 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps3 PE=3 SV=1
Length = 208
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GAKG V++SGKL G+RA++ KF+ G M H G+P + V+ + GV+G+ V
Sbjct: 120 MNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGVTV 179
Query: 61 KIMLP 65
KIM P
Sbjct: 180 KIMRP 184
>sp|Q12ZU5|RS3_METBU 30S ribosomal protein S3 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps3 PE=3 SV=1
Length = 304
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GA GCE+V+SGKL G R++ K V+G + H+G P +D V+ + + G LG KV
Sbjct: 121 MNAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKLGTLGCKV 180
Query: 61 KIMLP 65
+I+ P
Sbjct: 181 RIIHP 185
>sp|P20281|RS3_HALMA 30S ribosomal protein S3 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps3 PE=3
SV=2
Length = 304
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 9/86 (10%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGA G E+V+SGK+ G R++ KF G + H+G+P + V++ +++ G +G++V
Sbjct: 121 MESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRV 180
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLE 86
KI +P P LPD+ + E
Sbjct: 181 KI-IP--------PNAELPDDFEIYE 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,091,448
Number of Sequences: 539616
Number of extensions: 3698963
Number of successful extensions: 7077
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 6828
Number of HSP's gapped (non-prelim): 383
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)