Query psy17945
Match_columns 214
No_of_seqs 268 out of 634
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 18:20:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3181|consensus 100.0 2.7E-42 5.9E-47 299.0 5.8 101 1-101 127-227 (244)
2 PTZ00084 40S ribosomal protein 100.0 2.6E-34 5.7E-39 248.6 8.5 92 1-92 127-218 (220)
3 PRK04191 rps3p 30S ribosomal p 100.0 1.3E-31 2.9E-36 228.2 8.8 83 1-92 121-203 (207)
4 TIGR01008 rpsC_E_A ribosomal p 100.0 6.7E-30 1.4E-34 217.6 7.8 77 1-86 119-195 (195)
5 COG0092 RpsC Ribosomal protein 99.9 4.4E-27 9.5E-32 205.9 6.5 82 1-94 132-214 (233)
6 TIGR01009 rpsC_bact ribosomal 99.8 1.5E-21 3.2E-26 167.3 5.8 63 1-65 142-205 (211)
7 CHL00048 rps3 ribosomal protei 99.8 2.2E-21 4.9E-26 166.7 6.3 63 1-65 149-212 (214)
8 PRK00310 rpsC 30S ribosomal pr 99.8 2E-21 4.4E-26 168.7 5.1 63 1-65 142-205 (232)
9 PF00189 Ribosomal_S3_C: Ribos 99.8 2.2E-20 4.8E-25 138.9 5.5 60 1-62 25-85 (85)
10 KOG3181|consensus 99.8 7.6E-20 1.6E-24 159.5 4.3 95 51-162 127-227 (244)
11 PTZ00084 40S ribosomal protein 98.9 7.7E-10 1.7E-14 96.6 4.7 41 113-153 178-218 (220)
12 PRK04191 rps3p 30S ribosomal p 97.5 0.00013 2.7E-09 63.1 4.2 36 112-156 171-206 (207)
13 COG0092 RpsC Ribosomal protein 95.5 0.013 2.7E-07 52.6 3.3 78 51-156 132-215 (233)
14 TIGR01008 rpsC_E_A ribosomal p 95.5 0.012 2.6E-07 51.0 3.1 27 112-147 169-195 (195)
15 PRK00310 rpsC 30S ribosomal pr 86.7 0.69 1.5E-05 40.9 3.3 63 51-126 142-205 (232)
16 TIGR01009 rpsC_bact ribosomal 84.0 1.1 2.3E-05 39.2 3.2 63 51-126 142-205 (211)
17 CHL00048 rps3 ribosomal protei 83.0 1.2 2.6E-05 39.0 3.1 74 39-126 138-212 (214)
No 1
>KOG3181|consensus
Probab=100.00 E-value=2.7e-42 Score=298.96 Aligned_cols=101 Identities=77% Similarity=1.204 Sum_probs=99.5
Q ss_pred CCCCCceeEEEEcccchhhhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECCCCCCCCCCCCCCCCC
Q psy17945 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDSTGKTGPKKPLPD 80 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~GeRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD 80 (214)
|+|||+||||+|||||+||||++|||.||+|+|||||+++|||+|++|++|+||+|||||+||+||||+|++||+.+|||
T Consensus 127 mesgAkGceviVSGKLrgqRAKsmKF~DG~mIhSG~pv~dyi~ta~rhVllrQGVlGIkVkIMlpydp~g~~GP~~pLPD 206 (244)
T KOG3181|consen 127 MESGAKGCEVIVSGKLRGQRAKSMKFVDGLMIHSGQPVKDYIDTAVRHVLLRQGVLGIKVKIMLPYDPKGKLGPKKPLPD 206 (244)
T ss_pred HHccCCccEEEEeccchhhhhhccccccceEEecCCcHHHHHHHHHHhhhhhcceeeeEEEEeccCCcccCcCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccCCCCCCccccc
Q psy17945 81 NVNVLEPKEEVNPTIPSSQVL 101 (214)
Q Consensus 81 ~v~I~epkee~~~~~p~s~~~ 101 (214)
+|+|.||+||+++++|.++.+
T Consensus 207 ~v~i~ePkee~~~~~p~~~~~ 227 (244)
T KOG3181|consen 207 RVTILEPKEEEPITAPAQVAK 227 (244)
T ss_pred eeEEeCccccccccCchhhhc
Confidence 999999999999999999865
No 2
>PTZ00084 40S ribosomal protein S3; Provisional
Probab=100.00 E-value=2.6e-34 Score=248.56 Aligned_cols=92 Identities=71% Similarity=1.178 Sum_probs=89.9
Q ss_pred CCCCCceeEEEEcccchhhhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECCCCCCCCCCCCCCCCC
Q psy17945 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDSTGKTGPKKPLPD 80 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~GeRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD 80 (214)
|+|||+||+|+|||||+|||||+|||++|+|.|||++++++||||++||+|+||+||||||||+||||+|.+||+++|||
T Consensus 127 m~aGakGikI~iSGRL~~EiARtE~~~eGrVl~Tg~~~~~~idy~~~~a~t~yGviGVKVwI~~~~~~~~~~~~~~~~pD 206 (220)
T PTZ00084 127 MESGAKGCEVIVSGKLRAQRAKSMKFRDGYMISTGQPKKDFVDSAVRHVLMRQGVIGVKVKIMLPYDPSGKNGPSAPLPD 206 (220)
T ss_pred HHcCCceEEEEEccchhhHHHHhhHhhccEEEecCchHHHheehheEEEcccCceeeEEEEEECCCCcccccCCCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccCC
Q psy17945 81 NVNVLEPKEEVN 92 (214)
Q Consensus 81 ~v~I~epkee~~ 92 (214)
.|+|+||+++..
T Consensus 207 ~~~i~~~~~~~~ 218 (220)
T PTZ00084 207 VITVLEPKEETA 218 (220)
T ss_pred cEEEeCCccccc
Confidence 999999999843
No 3
>PRK04191 rps3p 30S ribosomal protein S3P; Reviewed
Probab=99.97 E-value=1.3e-31 Score=228.21 Aligned_cols=83 Identities=40% Similarity=0.769 Sum_probs=80.1
Q ss_pred CCCCCceeEEEEcccchhhhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECCCCCCCCCCCCCCCCC
Q psy17945 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDSTGKTGPKKPLPD 80 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~GeRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD 80 (214)
|++||+||+|+|||||+|||||+|||++|+|++||+|+..+||||++||+|+||+||||||||+| +.+|||
T Consensus 121 ~~agakGiki~iSGrL~Ge~AR~e~~~eG~v~~~G~pl~tlIdya~~~a~t~~GviGIKVwI~~~---------~~~~pd 191 (207)
T PRK04191 121 MEAGALGVEIIISGKLTGERARTEKFTEGYIKKSGEPAEELVDRGFAIAKLKLGIIGVEVRIMPP---------DAKLPD 191 (207)
T ss_pred HHcCCeeEEEEEccccchHHHHhhhhhcceEeccCCcchheeeeEEEEEecCCeeEEEEEEEECC---------CCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999997 689999
Q ss_pred eEEEeCCcccCC
Q psy17945 81 NVNVLEPKEEVN 92 (214)
Q Consensus 81 ~v~I~epkee~~ 92 (214)
.|+|++|++++.
T Consensus 192 ~~~i~~~~~~~~ 203 (207)
T PRK04191 192 EIEIKEPVEVEE 203 (207)
T ss_pred EEEEeCCCCccc
Confidence 999999988754
No 4
>TIGR01008 rpsC_E_A ribosomal protein S3, eukaryotic/archaeal type. This model describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea. TIGRFAMs model TIGR01009 describes the bacterial/organellar type, although the organellar types have a different architecture with long insertions and may score poorly.
Probab=99.96 E-value=6.7e-30 Score=217.60 Aligned_cols=77 Identities=52% Similarity=0.864 Sum_probs=74.5
Q ss_pred CCCCCceeEEEEcccchhhhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECCCCCCCCCCCCCCCCC
Q psy17945 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDSTGKTGPKKPLPD 80 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~GeRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD 80 (214)
|++||+||+|+|||||+|||||+|||++|+|++||+|+..+||||++||+|+||+||||||||+| +.+|||
T Consensus 119 m~aGakGikI~iSGRL~GeiARtE~~~eG~v~~sG~Pl~t~IDya~~~a~t~yGviGIKVwI~~~---------~~~~pD 189 (195)
T TIGR01008 119 MEAGAKGVEVTISGKLTGERARTEKFAAGYLKHSGEPAEELVDKGFAIALLKLGVLGVKVKIMPP---------DVKLPD 189 (195)
T ss_pred HHcCCceEEEEEcccccchhhhhhheeccEEecCCCcchheeeeEEEEEecCCceEEEEEEEECC---------CCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999997 578999
Q ss_pred eEEEeC
Q psy17945 81 NVNVLE 86 (214)
Q Consensus 81 ~v~I~e 86 (214)
.|+|+|
T Consensus 190 ~~~i~~ 195 (195)
T TIGR01008 190 EVEIKE 195 (195)
T ss_pred EEEecC
Confidence 999975
No 5
>COG0092 RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4.4e-27 Score=205.89 Aligned_cols=82 Identities=34% Similarity=0.503 Sum_probs=73.9
Q ss_pred CCCCCceeEEEEcccchhhh-hceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECCCCCCCCCCCCCCCC
Q psy17945 1 MESGAKGCEVVVSGKLRGQR-AKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDSTGKTGPKKPLP 79 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~GeR-ARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LP 79 (214)
|++||+||+|+|||||+|+| ||+|||++|+|+||| ++++||||+++|+|+||+||||||||+|. .||
T Consensus 132 M~aGAkGiki~vSGRL~GaeiAR~E~y~eG~vplht--lrAdIDyg~a~A~ttyGiiGVKVwI~~ge----------~l~ 199 (233)
T COG0092 132 MRAGAKGIKIQVSGRLGGAEIARTEKYREGRVPLHT--LRADIDYGTAEAHTTYGVIGVKVWIYKGE----------VLP 199 (233)
T ss_pred HHcCCceeEEEEecccchHHHHhHHHHhcceeEccc--cceeeeeeeEEEEecCceEEEEEEEecCC----------cCC
Confidence 89999999999999999977 999999999999999 66679999999999999999999999983 899
Q ss_pred CeEEEeCCcccCCCC
Q psy17945 80 DNVNVLEPKEEVNPT 94 (214)
Q Consensus 80 D~v~I~epkee~~~~ 94 (214)
|.+.+.++.++..+.
T Consensus 200 ~~~~~~~~~~~~~~~ 214 (233)
T COG0092 200 DKVEIKEPAEVEEPA 214 (233)
T ss_pred CcccccCcccccccc
Confidence 999887766654433
No 6
>TIGR01009 rpsC_bact ribosomal protein S3, bacterial type. TIGRFAMs model TIGR01008 describes S3 of the eukaryotic cytosol and of the archaea.
Probab=99.84 E-value=1.5e-21 Score=167.33 Aligned_cols=63 Identities=32% Similarity=0.449 Sum_probs=61.3
Q ss_pred CCCCCceeEEEEcccchh-hhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECC
Q psy17945 1 MESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 65 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~G-eRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p 65 (214)
|++||+||+|+|||||+| ||||+|+|.+|+|++++ ++++||||+++|.|++|++|||||||++
T Consensus 142 ~~~g~~GikI~isGRl~g~e~Ar~e~~~~G~vpl~t--~~~~Idy~~~~a~T~~G~~GvKVwI~~~ 205 (211)
T TIGR01009 142 MKAGAKGIKVQVSGRLGGAEIARTEWYKEGRVPLHT--LRADIDYATAEAHTTYGIIGVKVWIFKG 205 (211)
T ss_pred HhcCCcEEEEEEecccCchhhhheeeeeeCccCccc--chhhcEEEEEEEEcCCceEEEEEEEEcC
Confidence 689999999999999999 89999999999999998 9999999999999999999999999997
No 7
>CHL00048 rps3 ribosomal protein S3
Probab=99.84 E-value=2.2e-21 Score=166.69 Aligned_cols=63 Identities=24% Similarity=0.311 Sum_probs=61.0
Q ss_pred CCCCCceeEEEEcccchh-hhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECC
Q psy17945 1 MESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 65 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~G-eRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p 65 (214)
|++||+||+|+|||||+| ||||+|+|.+|+|++++ ++++||||+++|.|++|++|||||||++
T Consensus 149 ~~~ga~GikI~iSGRL~Gae~AR~e~~~~G~vpl~t--l~a~Idy~~~~a~t~~G~~GVKVwI~~~ 212 (214)
T CHL00048 149 EKADIKGIKIQISGRLNGAEIARVEWIREGRVPLQT--LRAKIDYCSYPARTIYGVLGIKIWIFKD 212 (214)
T ss_pred HHhCCcEEEEEEecccCccchheEEEEecceeECCc--chhheEEEEEEEecCCceEEEEEEEEcC
Confidence 689999999999999999 89999999999999988 9999999999999999999999999986
No 8
>PRK00310 rpsC 30S ribosomal protein S3; Reviewed
Probab=99.83 E-value=2e-21 Score=168.66 Aligned_cols=63 Identities=30% Similarity=0.423 Sum_probs=61.0
Q ss_pred CCCCCceeEEEEcccchh-hhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECC
Q psy17945 1 MESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 65 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~G-eRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p 65 (214)
|++||+||+|+|||||+| +|||+|+|.+|+|++++ ++++||||+++|+|++|+||||||||++
T Consensus 142 ~~~g~~GikI~isGRl~g~e~Ar~e~~~~G~vpl~t--~~~~Idy~~~~a~T~~Gv~GVKVwI~~~ 205 (232)
T PRK00310 142 MRAGAKGIKVQVSGRLGGAEIARTEWYREGRVPLHT--LRADIDYGTAEAHTTYGIIGVKVWIYKG 205 (232)
T ss_pred HHcCCcEEEEEEcCCCCcceeeeEEEeeecccccce--eeeeeEEEEEEEecCCceEEEEEEEECC
Confidence 689999999999999999 89999999999999887 9999999999999999999999999997
No 9
>PF00189 Ribosomal_S3_C: Ribosomal protein S3, C-terminal domain; InterPro: IPR001351 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S3 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S3 is known to be involved in the binding of initiator Met-tRNA. This family of ribosomal proteins includes S3 from bacteria, algae and plant chloroplast, cyanelle, archaebacteria, plant mitochondria, vertebrates, insects, Caenorhabditis elegans and yeast []. This entry is the C-terminal domain.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_C 2XZM_C 3OAR_C 3OFX_C 1VS7_C 3I1O_C 2WWL_C 3R8O_C 2QAL_C 3J00_C ....
Probab=99.81 E-value=2.2e-20 Score=138.88 Aligned_cols=60 Identities=38% Similarity=0.635 Sum_probs=57.2
Q ss_pred CCCCCceeEEEEcccchh-hhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEE
Q psy17945 1 MESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 62 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~G-eRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~I 62 (214)
|++||+||+|+|||||+| +|||+++|..|.| ++++++++||||++++.|++|++||||||
T Consensus 25 ~~~~~~GikI~isGRl~g~~rar~~~~~~G~i--~~~~~~~~Idy~~~~~~tk~G~~GIKVwI 85 (85)
T PF00189_consen 25 MNKGIKGIKIQISGRLNGAERARTEKFKKGKI--SLQTFKSNIDYASSHAKTKYGVIGIKVWI 85 (85)
T ss_dssp HCTTSSEEEEEEESSGGGTSSSEEEEEEEESS--SSSSSTTEEEEEEEEEEESSSEEEEEEEE
T ss_pred hhcccceEEEEEeecCCCCccceEEEEECCCC--ccccceeeeeEEEEEEEcCCeeEEEEEEC
Confidence 568999999999999999 9999999999999 66679999999999999999999999998
No 10
>KOG3181|consensus
Probab=99.78 E-value=7.6e-20 Score=159.47 Aligned_cols=95 Identities=40% Similarity=0.607 Sum_probs=78.9
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCC----CCCCCCeEEEeC--CcccCCCCCCcccccCCcccccCCCCcccccceEEEEe
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGP----KKPLPDNVNVLE--PKEEVNPTIPSSQVLDKPLAKLGEIPVASVLGIKVKIM 124 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp----~~~LPD~v~I~e--pkee~~~~~p~s~~~~~p~~~~~~~~~~GvLGIKVkIM 124 (214)
+..|.-|++|.+ +||... ...+-|.+.|++ |..+.+.+.-++.. .++ ||||||||||
T Consensus 127 mesgAkGceviV------SGKLrgqRAKsmKF~DG~mIhSG~pv~dyi~ta~rhVl---lrQ--------GVlGIkVkIM 189 (244)
T KOG3181|consen 127 MESGAKGCEVIV------SGKLRGQRAKSMKFVDGLMIHSGQPVKDYIDTAVRHVL---LRQ--------GVLGIKVKIM 189 (244)
T ss_pred HHccCCccEEEE------eccchhhhhhccccccceEEecCCcHHHHHHHHHHhhh---hhc--------ceeeeEEEEe
Confidence 455788999988 566543 456899999984 66666767666654 445 9999999999
Q ss_pred cCCCCCCCCCCCCCCCCeeEEeCCCCCCCCCCCcccCC
Q psy17945 125 LPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFPQKKLP 162 (214)
Q Consensus 125 lp~Dp~Gk~Gp~~plPD~V~i~epk~e~~~~~p~~~~~ 162 (214)
|||||+|+.||++||||+|+|+|||||+++++|.+...
T Consensus 190 lpydp~g~~GP~~pLPD~v~i~ePkee~~~~~p~~~~~ 227 (244)
T KOG3181|consen 190 LPYDPKGKLGPKKPLPDRVTILEPKEEEPITAPAQVAK 227 (244)
T ss_pred ccCCcccCcCCCCCCCCeeEEeCccccccccCchhhhc
Confidence 99999999999999999999999999999999988654
No 11
>PTZ00084 40S ribosomal protein S3; Provisional
Probab=98.94 E-value=7.7e-10 Score=96.61 Aligned_cols=41 Identities=61% Similarity=1.078 Sum_probs=38.8
Q ss_pred cccccceEEEEecCCCCCCCCCCCCCCCCeeEEeCCCCCCC
Q psy17945 113 VASVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVN 153 (214)
Q Consensus 113 ~~GvLGIKVkIMlp~Dp~Gk~Gp~~plPD~V~i~epk~e~~ 153 (214)
..|+|||||.||+||||+|..||+.+|||.|.|.||+++..
T Consensus 178 ~yGviGVKVwI~~~~~~~~~~~~~~~~pD~~~i~~~~~~~~ 218 (220)
T PTZ00084 178 RQGVIGVKVKIMLPYDPSGKNGPSAPLPDVITVLEPKEETA 218 (220)
T ss_pred cCceeeEEEEEECCCCcccccCCCCCCCCcEEEeCCccccc
Confidence 56999999999999999999999999999999999999854
No 12
>PRK04191 rps3p 30S ribosomal protein S3P; Reviewed
Probab=97.47 E-value=0.00013 Score=63.06 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=30.6
Q ss_pred CcccccceEEEEecCCCCCCCCCCCCCCCCeeEEeCCCCCCCCCC
Q psy17945 112 PVASVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAF 156 (214)
Q Consensus 112 ~~~GvLGIKVkIMlp~Dp~Gk~Gp~~plPD~V~i~epk~e~~~~~ 156 (214)
...|+|||||.||+| ..+|||.|+|.||++++..+.
T Consensus 171 t~~GviGIKVwI~~~---------~~~~pd~~~i~~~~~~~~~~~ 206 (207)
T PRK04191 171 LKLGIIGVEVRIMPP---------DAKLPDEIEIKEPVEVEEVVE 206 (207)
T ss_pred cCCeeEEEEEEEECC---------CCCCCCEEEEeCCCCcccccC
Confidence 356999999999995 378999999999999876553
No 13
>COG0092 RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
Probab=95.49 E-value=0.013 Score=52.56 Aligned_cols=78 Identities=28% Similarity=0.474 Sum_probs=45.2
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCCCC-----CCCCe-EEEeCCcccCCCCCCcccccCCcccccCCCCcccccceEEEEe
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGPKK-----PLPDN-VNVLEPKEEVNPTIPSSQVLDKPLAKLGEIPVASVLGIKVKIM 124 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp~~-----~LPD~-v~I~epkee~~~~~p~s~~~~~p~~~~~~~~~~GvLGIKVkIM 124 (214)
++.|..||||.| +|+.|-.. .+-+- |-.+--..++.+.. ++ +. --.|+|||||.||
T Consensus 132 M~aGAkGiki~v------SGRL~GaeiAR~E~y~eG~vplhtlrAdIDyg~--a~--A~--------ttyGiiGVKVwI~ 193 (233)
T COG0092 132 MRAGAKGIKIQV------SGRLGGAEIARTEKYREGRVPLHTLRADIDYGT--AE--AH--------TTYGVIGVKVWIY 193 (233)
T ss_pred HHcCCceeEEEE------ecccchHHHHhHHHHhcceeEccccceeeeeee--EE--EE--------ecCceEEEEEEEe
Confidence 788999999999 78887443 11121 11111111111110 00 01 2349999999999
Q ss_pred cCCCCCCCCCCCCCCCCeeEEeCCCCCCCCCC
Q psy17945 125 LPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAF 156 (214)
Q Consensus 125 lp~Dp~Gk~Gp~~plPD~V~i~epk~e~~~~~ 156 (214)
.|- -|||.+.+.++.++..+..
T Consensus 194 ~ge----------~l~~~~~~~~~~~~~~~~~ 215 (233)
T COG0092 194 KGE----------VLPDKVEIKEPAEVEEPAE 215 (233)
T ss_pred cCC----------cCCCcccccCccccccccc
Confidence 973 5777777766666655543
No 14
>TIGR01008 rpsC_E_A ribosomal protein S3, eukaryotic/archaeal type. This model describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea. TIGRFAMs model TIGR01009 describes the bacterial/organellar type, although the organellar types have a different architecture with long insertions and may score poorly.
Probab=95.49 E-value=0.012 Score=50.97 Aligned_cols=27 Identities=52% Similarity=0.741 Sum_probs=22.6
Q ss_pred CcccccceEEEEecCCCCCCCCCCCCCCCCeeEEeC
Q psy17945 112 PVASVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLE 147 (214)
Q Consensus 112 ~~~GvLGIKVkIMlp~Dp~Gk~Gp~~plPD~V~i~e 147 (214)
...|+|||||.||.| ..+|||.|+|.|
T Consensus 169 t~yGviGIKVwI~~~---------~~~~pD~~~i~~ 195 (195)
T TIGR01008 169 LKLGVLGVKVKIMPP---------DVKLPDEVEIKE 195 (195)
T ss_pred cCCceEEEEEEEECC---------CCCCCCEEEecC
Confidence 356999999999985 257999999965
No 15
>PRK00310 rpsC 30S ribosomal protein S3; Reviewed
Probab=86.66 E-value=0.69 Score=40.92 Aligned_cols=63 Identities=24% Similarity=0.244 Sum_probs=33.7
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCCCCCCCCeEEEeCCcccCCCCCCcccccCCcccccCC-CCcccccceEEEEecC
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGE-IPVASVLGIKVKIMLP 126 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD~v~I~epkee~~~~~p~s~~~~~p~~~~~~-~~~~GvLGIKVkIMlp 126 (214)
++.|+.||||.| +|+++-. +.-....-++-.++....... -.-...+ ....|+|||||.||++
T Consensus 142 ~~~g~~GikI~i------sGRl~g~----e~Ar~e~~~~G~vpl~t~~~~---Idy~~~~a~T~~Gv~GVKVwI~~~ 205 (232)
T PRK00310 142 MRAGAKGIKVQV------SGRLGGA----EIARTEWYREGRVPLHTLRAD---IDYGTAEAHTTYGIIGVKVWIYKG 205 (232)
T ss_pred HHcCCcEEEEEE------cCCCCcc----eeeeEEEeeecccccceeeee---eEEEEEEEecCCceEEEEEEEECC
Confidence 567999999999 7877642 111222222222321111110 0000111 2466999999999996
No 16
>TIGR01009 rpsC_bact ribosomal protein S3, bacterial type. TIGRFAMs model TIGR01008 describes S3 of the eukaryotic cytosol and of the archaea.
Probab=83.99 E-value=1.1 Score=39.18 Aligned_cols=63 Identities=24% Similarity=0.328 Sum_probs=32.4
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCCCCCCCCeEEEeCCcccCCCCCCcccccCCcccccCC-CCcccccceEEEEecC
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGE-IPVASVLGIKVKIMLP 126 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD~v~I~epkee~~~~~p~s~~~~~p~~~~~~-~~~~GvLGIKVkIMlp 126 (214)
++.|+.||||.| +|+.+-.+ ..-.... .+-.+|. +.....-.-...+ .-..|+|||||.||+.
T Consensus 142 ~~~g~~GikI~i------sGRl~g~e-~Ar~e~~---~~G~vpl---~t~~~~Idy~~~~a~T~~G~~GvKVwI~~~ 205 (211)
T TIGR01009 142 MKAGAKGIKVQV------SGRLGGAE-IARTEWY---KEGRVPL---HTLRADIDYATAEAHTTYGIIGVKVWIFKG 205 (211)
T ss_pred HhcCCcEEEEEE------ecccCchh-hhheeee---eeCccCc---ccchhhcEEEEEEEEcCCceEEEEEEEEcC
Confidence 577999999999 67766321 1111111 1111211 1111000000111 2466999999999985
No 17
>CHL00048 rps3 ribosomal protein S3
Probab=82.96 E-value=1.2 Score=38.96 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=37.3
Q ss_pred hhheeeEEEEEeccCeeeeEEEEEECCCCCCCCCCCCCCCCCeEEEeCCcccCCCCCCcccccCCcccccCC-CCccccc
Q psy17945 39 NDYVNTATRHVLLRQGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGE-IPVASVL 117 (214)
Q Consensus 39 r~~VD~a~~ha~lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD~v~I~epkee~~~~~p~s~~~~~p~~~~~~-~~~~GvL 117 (214)
|..+..+.+.+ ++.|+.||||.| +|+.+-. ...-.-... +-.+ |-+.....-.-...+ .-..|++
T Consensus 138 Rra~~~~i~~~-~~~ga~GikI~i------SGRL~Ga-e~AR~e~~~---~G~v---pl~tl~a~Idy~~~~a~t~~G~~ 203 (214)
T CHL00048 138 RKAMKKAIELA-EKADIKGIKIQI------SGRLNGA-EIARVEWIR---EGRV---PLQTLRAKIDYCSYPARTIYGVL 203 (214)
T ss_pred HHHHHHHHHHH-HHhCCcEEEEEE------ecccCcc-chheEEEEe---ccee---ECCcchhheEEEEEEEecCCceE
Confidence 33333333333 566999999999 7887743 222222222 2222 222211000001111 2456999
Q ss_pred ceEEEEecC
Q psy17945 118 GIKVKIMLP 126 (214)
Q Consensus 118 GIKVkIMlp 126 (214)
||||.||+-
T Consensus 204 GVKVwI~~~ 212 (214)
T CHL00048 204 GIKIWIFKD 212 (214)
T ss_pred EEEEEEEcC
Confidence 999999973
Done!