Query psy17945
Match_columns 214
No_of_seqs 268 out of 634
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 18:20:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_B 40S ribosomal protein S 100.0 3.1E-38 1.1E-42 273.1 2.2 98 1-98 127-224 (227)
2 2zkq_c 40S ribosomal protein S 100.0 3.6E-38 1.2E-42 275.0 2.6 101 1-101 127-227 (243)
3 3u5c_D RP13, YS3, 40S ribosoma 100.0 6.6E-37 2.3E-41 266.9 7.7 98 1-101 127-225 (240)
4 2xzm_C KH domain containing pr 100.0 5.2E-36 1.8E-40 261.3 8.4 99 1-99 130-230 (243)
5 3j20_C 30S ribosomal protein S 100.0 6.5E-30 2.2E-34 218.8 4.4 82 1-91 121-202 (210)
6 2vqe_C 30S ribosomal protein S 99.9 2.1E-24 7.2E-29 187.6 4.2 64 1-66 142-206 (239)
7 3r8n_C 30S ribosomal protein S 99.9 1.2E-23 4.2E-28 179.3 5.1 63 1-65 141-204 (206)
8 3bbn_C Ribosomal protein S3; s 99.9 6.8E-24 2.3E-28 181.6 3.2 63 1-65 153-216 (218)
9 3i1m_C 30S ribosomal protein S 99.9 1.1E-23 3.8E-28 182.7 4.0 63 1-65 142-205 (233)
10 3iz6_B 40S ribosomal protein S 99.4 3.5E-14 1.2E-18 123.0 2.8 94 51-158 127-223 (227)
11 2zkq_c 40S ribosomal protein S 99.4 6.5E-14 2.2E-18 122.4 2.0 97 51-160 127-225 (243)
12 2xzm_C KH domain containing pr 99.2 4.1E-12 1.4E-16 111.0 4.8 97 51-160 130-230 (243)
13 3u5c_D RP13, YS3, 40S ribosoma 99.2 4.5E-12 1.5E-16 110.8 4.2 94 51-162 127-225 (240)
14 3j20_C 30S ribosomal protein S 97.1 0.00014 4.7E-09 62.4 1.6 81 51-153 121-203 (210)
15 2vqe_C 30S ribosomal protein S 95.0 0.018 6E-07 50.2 4.0 78 51-141 142-221 (239)
16 3bbn_C Ribosomal protein S3; s 90.8 0.32 1.1E-05 41.5 5.2 63 51-126 153-216 (218)
17 3i1m_C 30S ribosomal protein S 86.1 0.37 1.3E-05 41.9 2.6 63 51-126 142-205 (233)
18 3r8n_C 30S ribosomal protein S 84.8 0.51 1.7E-05 40.1 2.8 63 51-126 141-204 (206)
No 1
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.1e-38 Score=273.07 Aligned_cols=98 Identities=69% Similarity=1.101 Sum_probs=91.5
Q ss_pred CCCCCceeEEEEcccchhhhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECCCCCCCCCCCCCCCCC
Q psy17945 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDSTGKTGPKKPLPD 80 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~GeRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD 80 (214)
|++||+||+|+|||||+|+|||+|||++|+|+||+|+++++||||++||+|+||+||||||||+||||+|++||+++|||
T Consensus 127 m~aGakGikI~iSGRL~GaiARtE~~~eG~vlhTlqtlra~IDya~~~a~T~yGviGVKVWI~~~~dp~g~~g~~~~lpD 206 (227)
T 3iz6_B 127 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPD 206 (227)
T ss_dssp TTTCCSEEECCBCSCGGGSSCCCBCCEEECCCSSSSCTTSCEEECCCCCBCSSSBCCCCCEEECSCTTSCCCCCSSCCCC
T ss_pred HHcCCceEEEEEecccCCceeeEeeeeCCeecccCChhhheeeEEEEEEEcCCeeEEEEEEEECCCCcccccCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccCCCCCCcc
Q psy17945 81 NVNVLEPKEEVNPTIPSS 98 (214)
Q Consensus 81 ~v~I~epkee~~~~~p~s 98 (214)
+|+|+||++|..+.+|..
T Consensus 207 ~v~i~~pk~~~~~~~~~~ 224 (227)
T 3iz6_B 207 LVTIHPPKEENELRPPAL 224 (227)
T ss_dssp CCSCCCCSSCCCC-----
T ss_pred eEEEeCCCcccCCCCCcc
Confidence 999999999976666643
No 2
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3.6e-38 Score=275.01 Aligned_cols=101 Identities=82% Similarity=1.288 Sum_probs=66.1
Q ss_pred CCCCCceeEEEEcccchhhhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECCCCCCCCCCCCCCCCC
Q psy17945 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDSTGKTGPKKPLPD 80 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~GeRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD 80 (214)
|++||+||+|+|||||+|+|||+|||++|+|.|+|+|++++||||++||+|+||+||||||||+||||+|++||+++|||
T Consensus 127 m~aGakGikI~iSGRL~GaiARtE~~~eG~vLhTg~plra~IDYa~~~a~T~yGvlGVKVWI~~~~dp~g~~gp~~~lpD 206 (243)
T 2zkq_c 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPD 206 (243)
T ss_dssp HHSSCSEEEEEECSSGGGSSCCCBCCEEESSHHHHSSTTCCEEEEEECCCCSSCCCCEEEEEECCCC-------------
T ss_pred HhcCCceEEEEEecchhhHhhhhhhhcCcEEeecCchhhhceeEEEEEEEcCCceEEEEEEEecCCCcCCcCCCCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccCCCCCCccccc
Q psy17945 81 NVNVLEPKEEVNPTIPSSQVL 101 (214)
Q Consensus 81 ~v~I~epkee~~~~~p~s~~~ 101 (214)
+|+|+||++|..+++|.|+.+
T Consensus 207 ~v~i~e~k~~~~~~~~~~~~~ 227 (243)
T 2zkq_c 207 HVSIVEPKDEILPTTPISEQK 227 (243)
T ss_dssp ---------------------
T ss_pred eEEEeCCccccccCCCccccc
Confidence 999999999999999999764
No 3
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=100.00 E-value=6.6e-37 Score=266.88 Aligned_cols=98 Identities=68% Similarity=1.074 Sum_probs=96.2
Q ss_pred CCCCCceeEEEEcccchhhhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECCCCCC-CCCCCCCCCC
Q psy17945 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDST-GKTGPKKPLP 79 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~GeRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p~Dp~-Gk~Gp~~~LP 79 (214)
|++||+||+|+|||||+|+|||+|||++|+|+||||+++++||||++||+|+||+||||||||+ ||+ |++|| ++||
T Consensus 127 m~aGakGikI~iSGRL~Ga~ARtE~~~eG~vlhTgqtlra~IDYa~~~a~T~yGviGVKVWI~~--dp~~g~~g~-~~lp 203 (240)
T 3u5c_D 127 MESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMR--DPAKSRTGP-KALP 203 (240)
T ss_dssp HHTTCSEEEEEEEECSSSSSCEEEEEEEECCCCSSHHHHHHEEEEEEEEECSSCEEEEEEEEEC--CGGGCSSSC-SSCT
T ss_pred HhcCCceeEEEEecccCCceeeEEeeecCeeccCCChhhheeeEEEEEEEcCCeeEEEEEEEEe--CcccccCCC-CCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999 999 99999 9999
Q ss_pred CeEEEeCCcccCCCCCCccccc
Q psy17945 80 DNVNVLEPKEEVNPTIPSSQVL 101 (214)
Q Consensus 80 D~v~I~epkee~~~~~p~s~~~ 101 (214)
|+|+|+||++|..+++|.|+++
T Consensus 204 D~v~i~epk~~~~~~~~~~~~~ 225 (240)
T 3u5c_D 204 DAVTIIEPKEEEPILAPSVKDY 225 (240)
T ss_dssp TCCEECCCCCCCCCCCCCEEEC
T ss_pred CeEEEECCccccCCCCCccccc
Confidence 9999999999999999999975
No 4
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=100.00 E-value=5.2e-36 Score=261.31 Aligned_cols=99 Identities=48% Similarity=0.907 Sum_probs=95.8
Q ss_pred CCCCCceeEEEEcccchhhhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECCCCCCCCC--CCCCCC
Q psy17945 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDSTGKT--GPKKPL 78 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~GeRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p~Dp~Gk~--Gp~~~L 78 (214)
|++||+||+|+|||||+|+|||+|||++|+|.|+++|++++||||+++|+|+||+||||||||+||||+|++ ||+++|
T Consensus 130 m~aGakGIkI~iSGRL~GaiARtE~~~eG~vL~T~rplra~IDYa~~~a~T~yGvlGVKVWI~~~~~~~g~~~~gp~~~l 209 (243)
T 2xzm_C 130 IQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGVKVKIMLPYEPNPAKKFGVKTPI 209 (243)
T ss_dssp HHTTCSEEEEEEEECTTSSSCEEEEEEEECCCCSSSHHHHSEEEEEEEEECSSSEEEEEEEEECCCCCCTTCCSSCCSCC
T ss_pred HhcCCceEEEEEeCCccchhheeeeeeCCeEeecCcchhhheEEEEEEEEcCCceEEEEEEEecCCCcCCcccCCCCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCeEEEeCCcccCCCCCCccc
Q psy17945 79 PDNVNVLEPKEEVNPTIPSSQ 99 (214)
Q Consensus 79 PD~v~I~epkee~~~~~p~s~ 99 (214)
||.|+|+||++|+.++++++.
T Consensus 210 pD~v~i~e~k~~~~~~~~~~~ 230 (243)
T 2xzm_C 210 PDNVIIHPPKQITDDKEIRTA 230 (243)
T ss_dssp SSCCBCCCCCCCCCCCCCCCC
T ss_pred CCeEEEeCCCccccccccccc
Confidence 999999999999888888864
No 5
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.96 E-value=6.5e-30 Score=218.78 Aligned_cols=82 Identities=41% Similarity=0.762 Sum_probs=63.9
Q ss_pred CCCCCceeEEEEcccchhhhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECCCCCCCCCCCCCCCCC
Q psy17945 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDSTGKTGPKKPLPD 80 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~GeRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD 80 (214)
|++||+||+|+|||||+|||||+|||++|+||++|.+++++||||++||+|+||+||||||||+| +.+|||
T Consensus 121 m~~GakGikI~iSGRL~GeiARtE~~~eG~vpl~tl~a~~~IDya~~~a~T~yGviGVKVwI~~~---------e~~lpd 191 (210)
T 3j20_C 121 MNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIMPP---------GARLPD 191 (210)
T ss_dssp HHHHCSEEEEEEEECTTTTSCEEEEEEEECCCCSSSHHHHHSEEEEEEEECSSCEEEEEEEEECC---------C-----
T ss_pred HhcCCceEEEEEecccCcceeeEEeeecceeeccCCcchhcEEEEEEEEEcCCcEEEEEEEEECC---------CCCCCC
Confidence 68999999999999999999999999999999999888889999999999999999999999997 567999
Q ss_pred eEEEeCCcccC
Q psy17945 81 NVNVLEPKEEV 91 (214)
Q Consensus 81 ~v~I~epkee~ 91 (214)
+|+|++|+.++
T Consensus 192 ~~~i~~~~~~~ 202 (210)
T 3j20_C 192 EIEIIEKPVEE 202 (210)
T ss_dssp -----------
T ss_pred cEEEeCcchhh
Confidence 99999988774
No 6
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=99.89 E-value=2.1e-24 Score=187.61 Aligned_cols=64 Identities=33% Similarity=0.435 Sum_probs=61.8
Q ss_pred CCCCCceeEEEEcccchh-hhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECCC
Q psy17945 1 MESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPW 66 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~G-eRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p~ 66 (214)
|++||+||+|+|||||+| ||||+|||.+|+|++++ ++++||||+++|+|+||+||||||||++.
T Consensus 142 m~~gakGIkI~iSGRL~GaeiARtE~~~eG~vpL~T--lra~IDYa~~~a~T~yGviGVKVWI~~ge 206 (239)
T 2vqe_C 142 MESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHT--LRANIDYGFALARTTYGVLGVKAYIFLGE 206 (239)
T ss_dssp HHSSCSEEEEEECSCTTTCSSCCCBCCEEECCCTTC--GGGCEEEEEECCBCSSCBCCEEEEEECCC
T ss_pred HHcCCCceEEEEcCCcchhhhhhhhhhhcCccccCC--ccceeEEEEEEEEcCCeeEEEEEEEEcCC
Confidence 689999999999999999 69999999999999998 99999999999999999999999999983
No 7
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=99.88 E-value=1.2e-23 Score=179.33 Aligned_cols=63 Identities=32% Similarity=0.413 Sum_probs=61.3
Q ss_pred CCCCCceeEEEEcccchh-hhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECC
Q psy17945 1 MESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 65 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~G-eRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p 65 (214)
|++||+||+|+|||||+| ||||+|||.+|+||+++ ++++||||+++|+|+||+||||||||++
T Consensus 141 m~~gakGikI~iSGRL~Gae~AR~e~~~eG~vpl~t--lra~IDy~~~~a~T~yGviGVKVwI~~g 204 (206)
T 3r8n_C 141 MRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHT--LRADIDYNTSEAHTTYGVIGVKVWIFKG 204 (206)
T ss_dssp HTTCCSEEEEECCSSSTTCSSCCCCCCEESCCCTTC--SSSCEEEEEEEEEETTEEEEEEEEEECC
T ss_pred hhcCCCceEEEEccccCCCcceeEEEEecceeeccc--cccccEEEEEEEEcCCeeEEEEEEEEcC
Confidence 789999999999999999 79999999999999998 9999999999999999999999999986
No 8
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.88 E-value=6.8e-24 Score=181.59 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=61.4
Q ss_pred CCCCCceeEEEEcccchh-hhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECC
Q psy17945 1 MESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 65 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~G-eRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p 65 (214)
|++||+||+|+|||||+| ||||+|+|.+|+||+++ ++++||||+++|+|+||+||||||||+|
T Consensus 153 m~~gakGikI~iSGRL~Gae~AR~e~~~eG~vpl~t--lra~IDy~~~~a~T~yGviGVKVWI~~~ 216 (218)
T 3bbn_C 153 EQADTKGIQIQIAGRIDGKEIARIEWIREGRVPLQT--IRAKIDYCAYTVRTIYGVLGIKIWIFMG 216 (218)
T ss_dssp HTTCCSEEEEECCSCCTTCSSCCCCEEEEECCCSSC--STTCCBCCEEECCCSSCCCEEEEEEECC
T ss_pred HHhCCCeEEEEEccCcchhhheeEEeEecccccCCc--cccceEEEEEEEEcCCeeEEEEEEEecC
Confidence 789999999999999999 99999999999999976 9999999999999999999999999997
No 9
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=99.88 E-value=1.1e-23 Score=182.70 Aligned_cols=63 Identities=32% Similarity=0.413 Sum_probs=61.3
Q ss_pred CCCCCceeEEEEcccchh-hhhceecccceEEeccCcchhhheeeEEEEEeccCeeeeEEEEEECC
Q psy17945 1 MESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 65 (214)
Q Consensus 1 MeaGAkG~EIvISGKL~G-eRARseKF~dG~m~~sG~p~r~~VD~a~~ha~lkqGvIGIKV~Im~p 65 (214)
|++||+||+|+|||||+| ||||+|||.+|+||+++ ++++||||+++|+|+||+||||||||++
T Consensus 142 m~aGakGikI~iSGRL~GaeiARtE~~~eG~vPL~T--lra~IDY~~~~a~T~yGviGVKVWI~~g 205 (233)
T 3i1m_C 142 MRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHT--LRADIDYNTSEAHTTYGVIGVKVWIFKG 205 (233)
T ss_dssp HTTCCSEEEEEEESSTTSCSSCCCCBCCEECCCTTC--SSSEEEEEEECCEETTEECEEEEEEEEE
T ss_pred hhcCCceEEEEEccccCCCcceeEEEEecCeeeccc--cccccEEEEEEEEcCCeeEEEEEEEECC
Confidence 789999999999999999 79999999999999998 8999999999999999999999999997
No 10
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.42 E-value=3.5e-14 Score=122.98 Aligned_cols=94 Identities=35% Similarity=0.539 Sum_probs=61.3
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCCCCCCCCeEEEeCCcccCCCC--CCcccccCCcccccCCC-CcccccceEEEEecCC
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPT--IPSSQVLDKPLAKLGEI-PVASVLGIKVKIMLPW 127 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD~v~I~epkee~~~~--~p~s~~~~~p~~~~~~~-~~~GvLGIKVkIMlp~ 127 (214)
++.|+.||||.| +|+++-. ..-.-...+-. ++. .|.... ---...+. -..|+|||||.||+||
T Consensus 127 m~aGakGikI~i------SGRL~Ga--iARtE~~~eG~---vlhTlqtlra~---IDya~~~a~T~yGviGVKVWI~~~~ 192 (227)
T 3iz6_B 127 MESGAKGCEVIV------SGKLRAQ--RAKSMKFKDGY---MISSGQPVNEY---IDAAVRHVLLRQGVLGIKVKIMLDW 192 (227)
T ss_dssp TTTCCSEEECCB------CSCGGGS--SCCCBCCEEEC---CCSSSSCTTSC---EEECCCCCBCSSSBCCCCCEEECSC
T ss_pred HHcCCceEEEEE------ecccCCc--eeeEeeeeCCe---ecccCChhhhe---eeEEEEEEEcCCeeEEEEEEEECCC
Confidence 788999999998 7887742 22221111111 111 111100 00011122 4679999999999999
Q ss_pred CCCCCCCCCCCCCCeeEEeCCCCCCCCCCCc
Q psy17945 128 DSTGKTGPKKPLPDNVNVLEPKEEVNPAFPQ 158 (214)
Q Consensus 128 Dp~Gk~Gp~~plPD~V~i~epk~e~~~~~p~ 158 (214)
||+|++||+++|||+|+|+|||+|+.+.+|.
T Consensus 193 dp~g~~g~~~~lpD~v~i~~pk~~~~~~~~~ 223 (227)
T 3iz6_B 193 DPKGKLGPTTPLPDLVTIHPPKEENELRPPA 223 (227)
T ss_dssp TTSCCCCCSSCCCCCCSCCCCSSCCCC----
T ss_pred CcccccCCCCCCCCeEEEeCCCcccCCCCCc
Confidence 9999999999999999999999998888775
No 11
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.39 E-value=6.5e-14 Score=122.39 Aligned_cols=97 Identities=38% Similarity=0.651 Sum_probs=35.3
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCCCCCCCCeEEEeCCcccCCCC-CCcccccCCcccccCC-CCcccccceEEEEecCCC
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPT-IPSSQVLDKPLAKLGE-IPVASVLGIKVKIMLPWD 128 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD~v~I~epkee~~~~-~p~s~~~~~p~~~~~~-~~~~GvLGIKVkIMlp~D 128 (214)
++.|+.||||.| +|+++-. ..-.-...+-.- +.+ .|.... ---...+ .-..|+|||||.||+|||
T Consensus 127 m~aGakGikI~i------SGRL~Ga--iARtE~~~eG~v--LhTg~plra~---IDYa~~~a~T~yGvlGVKVWI~~~~d 193 (243)
T 2zkq_c 127 MESGAKGCEVVV------SGKLRGQ--RAKSMKFVDGLM--IHSGDPVNYY---VDTAVRHVLLRQGVLGIKVKIMLPWD 193 (243)
T ss_dssp HHSSCSEEEEEE------CSSGGGS--SCCCBCCEEESS--HHHHSSTTCC---EEEEEECCCCSSCCCCEEEEEECCCC
T ss_pred HhcCCceEEEEE------ecchhhH--hhhhhhhcCcEE--eecCchhhhc---eeEEEEEEEcCCceEEEEEEEecCCC
Confidence 678999999999 7887633 222211111111 100 000000 0000111 236799999999999999
Q ss_pred CCCCCCCCCCCCCeeEEeCCCCCCCCCCCccc
Q psy17945 129 STGKTGPKKPLPDNVNVLEPKEEVNPAFPQKK 160 (214)
Q Consensus 129 p~Gk~Gp~~plPD~V~i~epk~e~~~~~p~~~ 160 (214)
|+|+.||+++|||.|+|+|||||+.+++|.|.
T Consensus 194 p~g~~gp~~~lpD~v~i~e~k~~~~~~~~~~~ 225 (243)
T 2zkq_c 194 PTGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225 (243)
T ss_dssp --------------------------------
T ss_pred cCCcCCCCCCCCCeEEEeCCccccccCCCccc
Confidence 99999999999999999999999998888775
No 12
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=99.24 E-value=4.1e-12 Score=110.98 Aligned_cols=97 Identities=26% Similarity=0.434 Sum_probs=66.8
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCCCCCCCCeEEEeCCcccCCCCC-CcccccCCcccccCC-CCcccccceEEEEecCCC
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTI-PSSQVLDKPLAKLGE-IPVASVLGIKVKIMLPWD 128 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD~v~I~epkee~~~~~-p~s~~~~~p~~~~~~-~~~~GvLGIKVkIMlp~D 128 (214)
++.|+.||||.| +|+++-. ..-.-...+-.- +.+- |....-. - ...+ .-..|+|||||.||+|||
T Consensus 130 m~aGakGIkI~i------SGRL~Ga--iARtE~~~eG~v--L~T~rplra~ID--Y-a~~~a~T~yGvlGVKVWI~~~~~ 196 (243)
T 2xzm_C 130 IQDGAKGCEIII------SGKLKQQ--RAKTMKFKQGYM--ICTGQPKNDYID--V-AVRHVFFKQGIMGVKVKIMLPYE 196 (243)
T ss_dssp HHTTCSEEEEEE------EECTTSS--SCEEEEEEEECC--CCSSSHHHHSEE--E-EEEEEECSSSEEEEEEEEECCCC
T ss_pred HhcCCceEEEEE------eCCccch--hheeeeeeCCeE--eecCcchhhheE--E-EEEEEEcCCceEEEEEEEecCCC
Confidence 678999999999 7888744 444444433332 2110 0010000 0 0011 135699999999999999
Q ss_pred CCCCC--CCCCCCCCeeEEeCCCCCCCCCCCccc
Q psy17945 129 STGKT--GPKKPLPDNVNVLEPKEEVNPAFPQKK 160 (214)
Q Consensus 129 p~Gk~--Gp~~plPD~V~i~epk~e~~~~~p~~~ 160 (214)
|+|+. ||+++|||.|+|+|||||++..++.+.
T Consensus 197 ~~g~~~~gp~~~lpD~v~i~e~k~~~~~~~~~~~ 230 (243)
T 2xzm_C 197 PNPAKKFGVKTPIPDNVIIHPPKQITDDKEIRTA 230 (243)
T ss_dssp CCTTCCSSCCSCCSSCCBCCCCCCCCCCCCCCCC
T ss_pred cCCcccCCCCCCCCCeEEEeCCCccccccccccc
Confidence 99999 999999999999999999887766653
No 13
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=99.22 E-value=4.5e-12 Score=110.78 Aligned_cols=94 Identities=32% Similarity=0.401 Sum_probs=66.1
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCCCCCCCCeEEEeCCcccCCCCC---CcccccCCcccccCC-CCcccccceEEEEecC
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTI---PSSQVLDKPLAKLGE-IPVASVLGIKVKIMLP 126 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD~v~I~epkee~~~~~---p~s~~~~~p~~~~~~-~~~~GvLGIKVkIMlp 126 (214)
++.|+.||||.| +|+++-. ..-.-...+-. +..+ -+..-. - ...+ .-..|+|||||.||+
T Consensus 127 m~aGakGikI~i------SGRL~Ga--~ARtE~~~eG~---vlhTgqtlra~ID---Y-a~~~a~T~yGviGVKVWI~~- 190 (240)
T 3u5c_D 127 MESGAKGCEVVV------SGKLRAA--RAKAMKFADGF---LIHSGQPVNDFID---T-ATRHVLMRQGVLGIKVKIMR- 190 (240)
T ss_dssp HHTTCSEEEEEE------EECSSSS--SCEEEEEEEEC---CCCSSHHHHHHEE---E-EEEEEECSSCEEEEEEEEEC-
T ss_pred HhcCCceeEEEE------ecccCCc--eeeEEeeecCe---eccCCChhhheee---E-EEEEEEcCCeeEEEEEEEEe-
Confidence 678999999999 7888744 33333333322 1111 111000 0 0111 135699999999999
Q ss_pred CCCC-CCCCCCCCCCCeeEEeCCCCCCCCCCCcccCC
Q psy17945 127 WDST-GKTGPKKPLPDNVNVLEPKEEVNPAFPQKKLP 162 (214)
Q Consensus 127 ~Dp~-Gk~Gp~~plPD~V~i~epk~e~~~~~p~~~~~ 162 (214)
||+ |++|| +||||+|+|+|||+|+.+++|.|..-
T Consensus 191 -dp~~g~~g~-~~lpD~v~i~epk~~~~~~~~~~~~~ 225 (240)
T 3u5c_D 191 -DPAKSRTGP-KALPDAVTIIEPKEEEPILAPSVKDY 225 (240)
T ss_dssp -CGGGCSSSC-SSCTTCCEECCCCCCCCCCCCCEEEC
T ss_pred -CcccccCCC-CCCCCeEEEECCccccCCCCCccccc
Confidence 999 99999 99999999999999999999998754
No 14
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.10 E-value=0.00014 Score=62.39 Aligned_cols=81 Identities=20% Similarity=0.380 Sum_probs=34.1
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCCCCCCCCeEEEeCCcccCCCCCC-cccccCCcccccCCC-CcccccceEEEEecCCC
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKPLAKLGEI-PVASVLGIKVKIMLPWD 128 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD~v~I~epkee~~~~~p-~s~~~~~p~~~~~~~-~~~GvLGIKVkIMlp~D 128 (214)
++.|+.||||.| +|+.+- ...-.-...+ -.+|... +... .---...+. -..|+|||||.||+|
T Consensus 121 m~~GakGikI~i------SGRL~G--eiARtE~~~e---G~vpl~tl~a~~--~IDya~~~a~T~yGviGVKVwI~~~-- 185 (210)
T 3j20_C 121 MNNGARGVEIRL------SGKLTG--ERAKSIRFYQ---GYLAKVGNPAET--LVSKGYAQALLKLGVIGVKVAIMPP-- 185 (210)
T ss_dssp HHHHCSEEEEEE------EECTTT--TSCEEEEEEE---ECCCCSSSHHHH--HSEEEEEEEECSSCEEEEEEEEECC--
T ss_pred HhcCCceEEEEE------ecccCc--ceeeEEeeec---ceeeccCCcchh--cEEEEEEEEEcCCcEEEEEEEEECC--
Confidence 578999999999 788874 2332222222 1121111 1100 000001111 356999999999995
Q ss_pred CCCCCCCCCCCCCeeEEeCCCCCCC
Q psy17945 129 STGKTGPKKPLPDNVNVLEPKEEVN 153 (214)
Q Consensus 129 p~Gk~Gp~~plPD~V~i~epk~e~~ 153 (214)
..+|||.|+|.||+.++.
T Consensus 186 -------e~~lpd~~~i~~~~~~~~ 203 (210)
T 3j20_C 186 -------GARLPDEIEIIEKPVEEE 203 (210)
T ss_dssp -------C-----------------
T ss_pred -------CCCCCCcEEEeCcchhhh
Confidence 457999999999998853
No 15
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=95.02 E-value=0.018 Score=50.18 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=34.3
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCCCCCCCCeEEEeCCcccCCCCCCcccccCCcccccCCC-CcccccceEEEEecCC-C
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGEI-PVASVLGIKVKIMLPW-D 128 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD~v~I~epkee~~~~~p~s~~~~~p~~~~~~~-~~~GvLGIKVkIMlp~-D 128 (214)
++.|+.||||.| +|+++-.+ ..- ..--.+-.++... ..+.---...+. -..|+|||||.||++. .
T Consensus 142 m~~gakGIkI~i------SGRL~Gae-iAR---tE~~~eG~vpL~T---lra~IDYa~~~a~T~yGviGVKVWI~~ge~l 208 (239)
T 2vqe_C 142 MESGAKGAKVIV------SGRIGGAE-QAR---TEWAAQGRVPLHT---LRANIDYGFALARTTYGVLGVKAYIFLGEVI 208 (239)
T ss_dssp HHSSCSEEEEEE------CSCTTTCS-SCC---CBCCEEECCCTTC---GGGCEEEEEECCBCSSCBCCEEEEEECCCC-
T ss_pred HHcCCCceEEEE------cCCcchhh-hhh---hhhhhcCccccCC---ccceeEEEEEEEEcCCeeEEEEEEEEcCCcC
Confidence 678999999999 78887432 111 1111111121111 110000011122 4679999999999984 4
Q ss_pred CCCCCCCCCCCCC
Q psy17945 129 STGKTGPKKPLPD 141 (214)
Q Consensus 129 p~Gk~Gp~~plPD 141 (214)
|.++.+|..++|-
T Consensus 209 ~~~~~~~~~~~~~ 221 (239)
T 2vqe_C 209 GGQKPKARPELPK 221 (239)
T ss_dssp -------------
T ss_pred CCcCCCCCCCCcc
Confidence 7888887666553
No 16
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=90.79 E-value=0.32 Score=41.50 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=34.3
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCCCCCCCCeEEEeCCcccCCCCCCcccccCCcccccCC-CCcccccceEEEEecC
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGE-IPVASVLGIKVKIMLP 126 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD~v~I~epkee~~~~~p~s~~~~~p~~~~~~-~~~~GvLGIKVkIMlp 126 (214)
++.|+.||||.| +|+.+-. ...-.-... +-.+|..+.... ---...+ .-..|+|||||.||++
T Consensus 153 m~~gakGikI~i------SGRL~Ga-e~AR~e~~~---eG~vpl~tlra~---IDy~~~~a~T~yGviGVKVWI~~~ 216 (218)
T 3bbn_C 153 EQADTKGIQIQI------AGRIDGK-EIARIEWIR---EGRVPLQTIRAK---IDYCAYTVRTIYGVLGIKIWIFMG 216 (218)
T ss_dssp HTTCCSEEEEEC------CSCCTTC-SSCCCCEEE---EECCCSSCSTTC---CBCCEEECCCSSCCCEEEEEEECC
T ss_pred HHhCCCeEEEEE------ccCcchh-hheeEEeEe---cccccCCccccc---eEEEEEEEEcCCeeEEEEEEEecC
Confidence 678999999999 7888742 222222221 112222221110 0000111 2367999999999986
No 17
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=86.11 E-value=0.37 Score=41.85 Aligned_cols=63 Identities=25% Similarity=0.316 Sum_probs=33.3
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCCCCCCCCeEEEeCCcccCCCCCCcccccCCcccccCCC-CcccccceEEEEecC
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGEI-PVASVLGIKVKIMLP 126 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD~v~I~epkee~~~~~p~s~~~~~p~~~~~~~-~~~GvLGIKVkIMlp 126 (214)
++.|+.||||.| +|+.+-.+ ..- ..--.+-.+ |.+...+.---...+. -..|+|||||.||.+
T Consensus 142 m~aGakGikI~i------SGRL~Gae-iAR---tE~~~eG~v---PL~Tlra~IDY~~~~a~T~yGviGVKVWI~~g 205 (233)
T 3i1m_C 142 MRLGAKGIKVEV------SGRLGGAE-IAR---TEWYREGRV---PLHTLRADIDYNTSEAHTTYGVIGVKVWIFKG 205 (233)
T ss_dssp HTTCCSEEEEEE------ESSTTSCS-SCC---CCBCCEECC---CTTCSSSEEEEEEECCEETTEECEEEEEEEEE
T ss_pred hhcCCceEEEEE------ccccCCCc-cee---EEEEecCee---eccccccccEEEEEEEEcCCeeEEEEEEEECC
Confidence 678999999999 78876321 111 111111112 1111111000011222 467999999999996
No 18
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=84.76 E-value=0.51 Score=40.13 Aligned_cols=63 Identities=25% Similarity=0.327 Sum_probs=32.9
Q ss_pred ccCeeeeEEEEEECCCCCCCCCCCCCCCCCeEEEeCCcccCCCCCCcccccCCcccccCCC-CcccccceEEEEecC
Q psy17945 51 LRQGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGEI-PVASVLGIKVKIMLP 126 (214)
Q Consensus 51 lkqGvIGIKV~Im~p~Dp~Gk~Gp~~~LPD~v~I~epkee~~~~~p~s~~~~~p~~~~~~~-~~~GvLGIKVkIMlp 126 (214)
++.|+.||||.| +|+.+-.+ ..-.-. -.+-.+ |.+...+.---...+. -..|+|||||.||..
T Consensus 141 m~~gakGikI~i------SGRL~Gae-~AR~e~---~~eG~v---pl~tlra~IDy~~~~a~T~yGviGVKVwI~~g 204 (206)
T 3r8n_C 141 MRLGAKGIKVEV------SGRLGGAE-IARTEW---YREGRV---PLHTLRADIDYNTSEAHTTYGVIGVKVWIFKG 204 (206)
T ss_dssp HTTCCSEEEEEC------CSSSTTCS-SCCCCC---CEESCC---CTTCSSSCEEEEEEEEEETTEEEEEEEEEECC
T ss_pred hhcCCCceEEEE------ccccCCCc-ceeEEE---Eeccee---eccccccccEEEEEEEEcCCeeEEEEEEEEcC
Confidence 678999999998 78887421 111111 111112 1221111000011112 367999999999974
Done!