Your job contains 1 sequence.
>psy17945
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV
KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGEIPVASVLGIK
VKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFPQKKLPFKTASLYLAGMLIAIWMS
VQSLMGANKNPEDKPYLFRIKSTPGQNQTHNLYH
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17945
(214 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q3T169 - symbol:RPS3 "40S ribosomal protein S3"... 441 1.4e-41 1
UNIPROTKB|E9PL09 - symbol:RPS3 "40S ribosomal protein S3"... 441 1.4e-41 1
UNIPROTKB|H0YEU2 - symbol:RPS3 "40S ribosomal protein S3"... 441 1.4e-41 1
UNIPROTKB|J3KN86 - symbol:RPS3 "40S ribosomal protein S3"... 441 1.4e-41 1
UNIPROTKB|P23396 - symbol:RPS3 "40S ribosomal protein S3"... 441 1.4e-41 1
UNIPROTKB|Q0Z8U2 - symbol:RPS3 "40S ribosomal protein S3"... 441 1.4e-41 1
UNIPROTKB|Q5R465 - symbol:RPS3 "40S ribosomal protein S3"... 441 1.4e-41 1
UNIPROTKB|E9PSF4 - symbol:RPS3 "40S ribosomal protein S3"... 440 1.7e-41 1
UNIPROTKB|F1N9X5 - symbol:RPS3 "Uncharacterized protein" ... 440 1.7e-41 1
UNIPROTKB|F1SUM7 - symbol:RPS3 "40S ribosomal protein S3"... 438 2.8e-41 1
FB|FBgn0002622 - symbol:RpS3 "Ribosomal protein S3" speci... 438 2.8e-41 1
UNIPROTKB|E2RH47 - symbol:RPS3 "40S ribosomal protein S3"... 437 3.6e-41 1
MGI|MGI:1350917 - symbol:Rps3 "ribosomal protein S3" spec... 437 3.6e-41 1
RGD|619888 - symbol:Rps3 "ribosomal protein S3" species:1... 437 3.6e-41 1
ZFIN|ZDB-GENE-030131-8494 - symbol:rps3 "ribosomal protei... 434 7.5e-41 1
RGD|1560831 - symbol:RGD1560831 "similar to 40S ribosomal... 429 2.6e-40 1
UNIPROTKB|F1NPA9 - symbol:RPS3 "Uncharacterized protein" ... 429 2.6e-40 1
WB|WBGene00004472 - symbol:rps-3 species:6239 "Caenorhabd... 371 3.6e-34 1
UNIPROTKB|G4MP11 - symbol:MGG_05673 "40S ribosomal protei... 354 2.3e-32 1
TAIR|locus:2065863 - symbol:AT2G31610 species:3702 "Arabi... 353 2.9e-32 1
ASPGD|ASPL0000016707 - symbol:AN4087 species:162425 "Emer... 350 6.0e-32 1
TAIR|locus:2084490 - symbol:AT3G53870 species:3702 "Arabi... 341 5.4e-31 1
TAIR|locus:2169518 - symbol:AT5G35530 species:3702 "Arabi... 329 1.0e-29 1
POMBASE|SPBC16G5.14c - symbol:rps3 "40S ribosomal protein... 327 1.6e-29 1
SGD|S000005122 - symbol:RPS3 "Protein component of the sm... 325 2.7e-29 1
GENEDB_PFALCIPARUM|PF14_0627 - symbol:PF14_0627 "ribosoma... 297 2.5e-26 1
UNIPROTKB|Q8IKH8 - symbol:PF14_0627 "40S ribosomal protei... 297 2.5e-26 1
CGD|CAL0001259 - symbol:RPS3 species:5476 "Candida albica... 264 7.8e-23 1
DICTYBASE|DDB_G0293000 - symbol:rps3 "40S ribosomal prote... 258 3.4e-22 1
UNIPROTKB|E9PPU1 - symbol:RPS3 "40S ribosomal protein S3"... 194 2.0e-15 1
UNIPROTKB|D4AAX0 - symbol:D4AAX0 "Uncharacterized protein... 192 3.3e-15 1
UNIPROTKB|E9PJN9 - symbol:RPS3 "40S ribosomal protein S3"... 183 3.0e-14 1
>UNIPROTKB|Q3T169 [details] [associations]
symbol:RPS3 "40S ribosomal protein S3" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0051059 "NF-kappaB binding" evidence=IEA] [GO:0045738 "negative
regulation of DNA repair" evidence=IEA] [GO:0032587 "ruffle
membrane" evidence=IEA] [GO:0032088 "negative regulation of
NF-kappaB transcription factor activity" evidence=IEA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006919 "activation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005703
InterPro:IPR009019 InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650
PROSITE:PS00548 PROSITE:PS50823 SMART:SM00322 GO:GO:0005634
GO:GO:0006917 GO:GO:0003684 GO:GO:0006412 GO:GO:0003729
GO:GO:0006974 GO:GO:0006919 GO:GO:0003735 GO:GO:0030529
GO:GO:0032587 GO:GO:0004519 GO:GO:0032088 GO:GO:0003906
Gene3D:3.30.300.20 InterPro:IPR015946 GO:GO:0022627 SUPFAM:SSF54814
Gene3D:3.30.1140.32 SUPFAM:SSF54821 eggNOG:COG0092
HOGENOM:HOG000210611 KO:K02985 TIGRFAMs:TIGR01008 EMBL:BC102090
IPI:IPI00685601 RefSeq:NP_001029219.1 UniGene:Bt.15460
ProteinModelPortal:Q3T169 SMR:Q3T169 STRING:Q3T169 PRIDE:Q3T169
Ensembl:ENSBTAT00000003962 GeneID:326588 KEGG:bta:326588 CTD:6188
GeneTree:ENSGT00390000008610 HOVERGEN:HBG002195 InParanoid:Q3T169
OMA:CNDYVET OrthoDB:EOG4GXFNJ NextBio:20809658 ArrayExpress:Q3T169
GO:GO:0045738 Uniprot:Q3T169
Length = 243
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 86/105 (81%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 187 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 231
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>UNIPROTKB|E9PL09 [details] [associations]
symbol:RPS3 "40S ribosomal protein S3" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0015935 "small ribosomal subunit"
evidence=IEA] InterPro:IPR001351 InterPro:IPR004044
InterPro:IPR004087 InterPro:IPR005703 InterPro:IPR009019
InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548
PROSITE:PS50823 SMART:SM00322 GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 Gene3D:3.30.300.20 InterPro:IPR015946 SUPFAM:SSF54814
GO:GO:0015935 Gene3D:3.30.1140.32 SUPFAM:SSF54821
TIGRFAMs:TIGR01008 ChiTaRS:RpS3 HGNC:HGNC:10420 EMBL:AP000744
IPI:IPI00978298 ProteinModelPortal:E9PL09 SMR:E9PL09 PRIDE:E9PL09
Ensembl:ENST00000526608 ArrayExpress:E9PL09 Bgee:E9PL09
Uniprot:E9PL09
Length = 231
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 86/105 (81%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 115 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 174
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 175 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 219
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 169 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 210
>UNIPROTKB|H0YEU2 [details] [associations]
symbol:RPS3 "40S ribosomal protein S3" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
InterPro:IPR001351 InterPro:IPR009019 InterPro:IPR018280
Pfam:PF00189 PROSITE:PS00548 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 SUPFAM:SSF54814 Gene3D:3.30.1140.32
SUPFAM:SSF54821 ChiTaRS:RpS3 HGNC:HGNC:10420 EMBL:AP000744
PRIDE:H0YEU2 Ensembl:ENST00000525933 Bgee:H0YEU2 Uniprot:H0YEU2
Length = 171
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 86/105 (81%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 55 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 114
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 115 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 159
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 109 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 150
>UNIPROTKB|J3KN86 [details] [associations]
symbol:RPS3 "40S ribosomal protein S3" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
InterPro:IPR001351 InterPro:IPR004044 InterPro:IPR004087
InterPro:IPR009019 InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650
PROSITE:PS00548 PROSITE:PS50823 SMART:SM00322 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.300.20
InterPro:IPR015946 SUPFAM:SSF54814 Gene3D:3.30.1140.32
SUPFAM:SSF54821 KO:K02985 CTD:6188 OMA:CNDYVET ChiTaRS:RpS3
UniGene:Hs.546286 UniGene:Hs.740358 GeneID:6188 KEGG:hsa:6188
HGNC:HGNC:10420 EMBL:AP000744 RefSeq:NP_001247435.1
ProteinModelPortal:J3KN86 Ensembl:ENST00000278572 Uniprot:J3KN86
Length = 259
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 86/105 (81%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 143 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 202
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 203 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 247
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 197 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 238
>UNIPROTKB|P23396 [details] [associations]
symbol:RPS3 "40S ribosomal protein S3" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=NAS;IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0045738 "negative regulation of DNA repair"
evidence=IMP] [GO:0032088 "negative regulation of NF-kappaB
transcription factor activity" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0004519 "endonuclease activity" evidence=IMP]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006917 "induction of apoptosis"
evidence=IDA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IDA]
[GO:0051536 "iron-sulfur cluster binding" evidence=NAS] [GO:0006412
"translation" evidence=IC;NAS;TAS] [GO:0006413 "translational
initiation" evidence=NAS;TAS] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0051059 "NF-kappaB binding" evidence=IPI]
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0003684 "damaged DNA binding" evidence=IDA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005829 "cytosol"
evidence=IDA;TAS] [GO:0032587 "ruffle membrane" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=TAS] [GO:0006414 "translational elongation"
evidence=TAS] [GO:0006415 "translational termination" evidence=TAS]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR001351 InterPro:IPR004044 InterPro:IPR004087
InterPro:IPR005703 InterPro:IPR009019 InterPro:IPR018280
Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548 PROSITE:PS50823
SMART:SM00322 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0006917
GO:GO:0000184 GO:GO:0003684 GO:GO:0006413 EMBL:CH471076
GO:GO:0003729 GO:GO:0006974 GO:GO:0051536 GO:GO:0006919
GO:GO:0003735 GO:GO:0032587 GO:GO:0004519 GO:GO:0032088
GO:GO:0003906 GO:GO:0006415 Gene3D:3.30.300.20 InterPro:IPR015946
GO:GO:0006414 GO:GO:0022627 Reactome:REACT_1762 SUPFAM:SSF54814
GO:GO:0006614 GO:GO:0019083 Gene3D:3.30.1140.32 SUPFAM:SSF54821
eggNOG:COG0092 HOGENOM:HOG000210611 KO:K02985 TIGRFAMs:TIGR01008
CTD:6188 HOVERGEN:HBG002195 OrthoDB:EOG4GXFNJ GO:GO:0045738
ChiTaRS:RpS3 EMBL:U14990 EMBL:U14991 EMBL:U14992 EMBL:X55715
EMBL:S42658 EMBL:AB061838 EMBL:AY791291 EMBL:AK313051 EMBL:BC003137
EMBL:BC003577 EMBL:BC013196 EMBL:BC034149 EMBL:BC071917
EMBL:BC100284 EMBL:L16016 EMBL:AB062288 IPI:IPI00011253 PIR:A41247
RefSeq:NP_000996.2 RefSeq:NP_001243731.1 RefSeq:NP_001247436.1
UniGene:Hs.546286 UniGene:Hs.740358 PDB:1WH9 PDBsum:1WH9
ProteinModelPortal:P23396 SMR:P23396 IntAct:P23396
MINT:MINT-4999144 STRING:P23396 PhosphoSite:P23396 DMDM:417719
PaxDb:P23396 PeptideAtlas:P23396 PRIDE:P23396 DNASU:6188
Ensembl:ENST00000524851 Ensembl:ENST00000527446
Ensembl:ENST00000531188 GeneID:6188 KEGG:hsa:6188 UCSC:uc001owh.3
GeneCards:GC11P075110 HGNC:HGNC:10420 MIM:600454 neXtProt:NX_P23396
PharmGKB:PA34829 InParanoid:P23396 PhylomeDB:P23396
EvolutionaryTrace:P23396 GenomeRNAi:6188 NextBio:24029
ArrayExpress:P23396 Bgee:P23396 CleanEx:HS_RPS3
Genevestigator:P23396 GermOnline:ENSG00000149273 Uniprot:P23396
Length = 243
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 86/105 (81%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 187 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 231
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>UNIPROTKB|Q0Z8U2 [details] [associations]
symbol:RPS3 "40S ribosomal protein S3" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0015935 "small
ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR001351 InterPro:IPR004044
InterPro:IPR004087 InterPro:IPR005703 InterPro:IPR009019
InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548
PROSITE:PS50823 SMART:SM00322 GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 GO:GO:0030529 Gene3D:3.30.300.20 InterPro:IPR015946
SUPFAM:SSF54814 GO:GO:0015935 Gene3D:3.30.1140.32 SUPFAM:SSF54821
eggNOG:COG0092 HOGENOM:HOG000210611 KO:K02985 TIGRFAMs:TIGR01008
CTD:6188 HOVERGEN:HBG002195 OrthoDB:EOG4GXFNJ EMBL:DQ660373
RefSeq:NP_001038066.1 UniGene:Ssc.53888 ProteinModelPortal:Q0Z8U2
SMR:Q0Z8U2 STRING:Q0Z8U2 PRIDE:Q0Z8U2 GeneID:733671 KEGG:ssc:733671
Uniprot:Q0Z8U2
Length = 243
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 86/105 (81%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 187 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 231
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>UNIPROTKB|Q5R465 [details] [associations]
symbol:RPS3 "40S ribosomal protein S3" species:9601 "Pongo
abelii" [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
InterPro:IPR001351 InterPro:IPR004044 InterPro:IPR004087
InterPro:IPR005703 InterPro:IPR009019 InterPro:IPR018280
Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548 PROSITE:PS50823
SMART:SM00322 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0030529 Gene3D:3.30.300.20 InterPro:IPR015946 SUPFAM:SSF54814
GO:GO:0015935 Gene3D:3.30.1140.32 SUPFAM:SSF54821 KO:K02985
TIGRFAMs:TIGR01008 CTD:6188 HOVERGEN:HBG002195 EMBL:CR861393
RefSeq:NP_001127020.1 UniGene:Pab.18462 ProteinModelPortal:Q5R465
PRIDE:Q5R465 GeneID:100174045 KEGG:pon:100174045 InParanoid:Q5R465
Uniprot:Q5R465
Length = 243
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 86/105 (81%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 187 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 231
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>UNIPROTKB|E9PSF4 [details] [associations]
symbol:RPS3 "40S ribosomal protein S3" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
InterPro:IPR001351 InterPro:IPR018280 Pfam:PF00189 PROSITE:PS00548
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1140.32 SUPFAM:SSF54821 ChiTaRS:RpS3 HGNC:HGNC:10420
EMBL:AP000744 IPI:IPI00939811 ProteinModelPortal:E9PSF4 SMR:E9PSF4
PRIDE:E9PSF4 Ensembl:ENST00000422465 ArrayExpress:E9PSF4
Bgee:E9PSF4 Uniprot:E9PSF4
Length = 103
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 83/99 (83%), Positives = 91/99 (91%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 60
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQ 99
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S+
Sbjct: 61 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISE 99
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 55 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 96
>UNIPROTKB|F1N9X5 [details] [associations]
symbol:RPS3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006917
"induction of apoptosis" evidence=IEA] [GO:0006919 "activation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0032088 "negative regulation of NF-kappaB transcription factor
activity" evidence=IEA] [GO:0032587 "ruffle membrane" evidence=IEA]
[GO:0045738 "negative regulation of DNA repair" evidence=IEA]
[GO:0051059 "NF-kappaB binding" evidence=IEA] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005703
InterPro:IPR009019 InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650
PROSITE:PS00548 PROSITE:PS50823 SMART:SM00322 GO:GO:0005634
GO:GO:0006917 GO:GO:0003684 GO:GO:0006412 GO:GO:0003729
GO:GO:0006974 GO:GO:0006919 GO:GO:0003735 GO:GO:0032587
GO:GO:0004519 GO:GO:0032088 GO:GO:0003906 Gene3D:3.30.300.20
InterPro:IPR015946 GO:GO:0022627 SUPFAM:SSF54814
Gene3D:3.30.1140.32 SUPFAM:SSF54821 TIGRFAMs:TIGR01008
GeneTree:ENSGT00390000008610 OMA:CNDYVET GO:GO:0045738
EMBL:AADN02055154 IPI:IPI00602924 PRIDE:F1N9X5
Ensembl:ENSGALT00000036364 ArrayExpress:F1N9X5 Uniprot:F1N9X5
Length = 243
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 86/105 (81%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD +GK GPKKPLPD+V+++EPKEE+ PT P S Q KP
Sbjct: 187 KIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTPISEQKGGKP 231
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPKEE+ P P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTP 222
>UNIPROTKB|F1SUM7 [details] [associations]
symbol:RPS3 "40S ribosomal protein S3" species:9823 "Sus
scrofa" [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001351 InterPro:IPR005703
InterPro:IPR009019 InterPro:IPR018280 Pfam:PF00189 PROSITE:PS00548
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF54814
GO:GO:0015935 Gene3D:3.30.1140.32 SUPFAM:SSF54821
TIGRFAMs:TIGR01008 OMA:TIRRIMN GeneTree:ENSGT00390000008610
EMBL:CU655994 Ensembl:ENSSSCT00000016207 Uniprot:F1SUM7
Length = 195
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 85/105 (80%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDG+MIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 79 MESGAKGCEVVVSGKLRGQRAKSMKFVDGVMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 138
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 139 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 183
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 133 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 174
>FB|FBgn0002622 [details] [associations]
symbol:RpS3 "Ribosomal protein S3" species:7227 "Drosophila
melanogaster" [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0006281 "DNA repair" evidence=IGI;NAS] [GO:0008534 "oxidized
purine nucleobase lesion DNA N-glycosylase activity" evidence=IDA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;NAS]
[GO:0003735 "structural constituent of ribosome"
evidence=ISS;IDA;NAS] [GO:0006412 "translation" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0005840 "ribosome"
evidence=IDA;NAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IMP] [GO:0005811 "lipid particle" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005703
InterPro:IPR009019 InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650
PROSITE:PS00548 PROSITE:PS50823 SMART:SM00322 EMBL:AE014297
GO:GO:0005875 GO:GO:0007067 GO:GO:0005811 GO:GO:0006412
GO:GO:0006281 GO:GO:0043524 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 GO:GO:0090305 GO:GO:0004519 GO:GO:0016363
Gene3D:3.30.300.20 InterPro:IPR015946 GO:GO:0008534 SUPFAM:SSF54814
GO:GO:0015935 Gene3D:3.30.1140.32 SUPFAM:SSF54821 eggNOG:COG0092
KO:K02985 TIGRFAMs:TIGR01008 CTD:6188 GeneTree:ENSGT00390000008610
OMA:CNDYVET EMBL:L13690 EMBL:X72921 EMBL:AY118971 PIR:S35620
RefSeq:NP_476632.1 UniGene:Dm.20234 ProteinModelPortal:Q06559
SMR:Q06559 DIP:DIP-17168N IntAct:Q06559 MINT:MINT-812597
STRING:Q06559 PaxDb:Q06559 PRIDE:Q06559 EnsemblMetazoa:FBtr0084410
GeneID:42761 KEGG:dme:Dmel_CG6779 FlyBase:FBgn0002622
InParanoid:Q06559 OrthoDB:EOG4SQVCP PhylomeDB:Q06559 ChiTaRS:RpS3
GenomeRNAi:42761 NextBio:830438 Bgee:Q06559 GermOnline:CG6779
Uniprot:Q06559
Length = 246
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 88/118 (74%), Positives = 97/118 (82%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKV
Sbjct: 129 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKV 188
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAK-LGEIPVASVL 117
K+MLP+D K GPKKPLPDNV+V+EPKEE P ++ P +K L ++ A VL
Sbjct: 189 KVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPPSKPLDDLSEAKVL 246
Score = 151 (58.2 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 28/36 (77%), Positives = 32/36 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEE 151
VLGIKVK+MLP+D K GPKKPLPDNV+V+EPKEE
Sbjct: 183 VLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEE 218
>UNIPROTKB|E2RH47 [details] [associations]
symbol:RPS3 "40S ribosomal protein S3" species:9615 "Canis
lupus familiaris" [GO:0051059 "NF-kappaB binding" evidence=IEA]
[GO:0045738 "negative regulation of DNA repair" evidence=IEA]
[GO:0032587 "ruffle membrane" evidence=IEA] [GO:0032088 "negative
regulation of NF-kappaB transcription factor activity"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006919 "activation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR001351 InterPro:IPR004044 InterPro:IPR004087
InterPro:IPR005703 InterPro:IPR009019 InterPro:IPR018280
Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548 PROSITE:PS50823
SMART:SM00322 GO:GO:0005634 GO:GO:0006917 GO:GO:0003684
GO:GO:0006412 GO:GO:0003729 GO:GO:0006974 GO:GO:0006919
GO:GO:0003735 GO:GO:0032587 GO:GO:0004519 GO:GO:0032088
GO:GO:0003906 Gene3D:3.30.300.20 InterPro:IPR015946 GO:GO:0022627
SUPFAM:SSF54814 Gene3D:3.30.1140.32 SUPFAM:SSF54821 PDB:2ZKQ
PDBsum:2ZKQ KO:K02985 TIGRFAMs:TIGR01008 CTD:6188
GeneTree:ENSGT00390000008610 OMA:CNDYVET GO:GO:0045738
RefSeq:XP_534008.1 ProteinModelPortal:E2RH47 SMR:E2RH47
PRIDE:E2RH47 Ensembl:ENSCAFT00000008686 GeneID:476804
KEGG:cfa:476804 EvolutionaryTrace:E2RH47 NextBio:20852408
Uniprot:E2RH47
Length = 243
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 85/105 (80%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD +GK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 187 KIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 231
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>MGI|MGI:1350917 [details] [associations]
symbol:Rps3 "ribosomal protein S3" species:10090 "Mus
musculus" [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISO] [GO:0004519 "endonuclease activity"
evidence=ISO] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0006917
"induction of apoptosis" evidence=ISO] [GO:0006919 "activation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=ISO] [GO:0012505 "endomembrane system" evidence=ISO]
[GO:0015935 "small ribosomal subunit" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=ISO] [GO:0030425 "dendrite"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0032088 "negative regulation of NF-kappaB transcription factor
activity" evidence=ISO] [GO:0032587 "ruffle membrane" evidence=ISO]
[GO:0045738 "negative regulation of DNA repair" evidence=ISO]
[GO:0051059 "NF-kappaB binding" evidence=ISO] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005703
InterPro:IPR009019 InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650
PROSITE:PS00548 PROSITE:PS50823 SMART:SM00322 MGI:MGI:1350917
GO:GO:0005634 GO:GO:0005737 GO:GO:0006917 GO:GO:0003684
GO:GO:0006412 GO:GO:0003729 GO:GO:0006974 GO:GO:0006919
GO:GO:0003735 GO:GO:0030529 GO:GO:0032587 GO:GO:0004519
GO:GO:0032088 GO:GO:0003906 Gene3D:3.30.300.20 InterPro:IPR015946
GO:GO:0022627 SUPFAM:SSF54814 Gene3D:3.30.1140.32 SUPFAM:SSF54821
eggNOG:COG0092 HOGENOM:HOG000210611 KO:K02985 TIGRFAMs:TIGR01008
CTD:6188 HOVERGEN:HBG002195 OMA:CNDYVET OrthoDB:EOG4GXFNJ
GO:GO:0045738 ChiTaRS:RpS3 EMBL:X76772 EMBL:BC010721
IPI:IPI00134599 PIR:S41170 RefSeq:NP_036182.1 UniGene:Mm.236868
ProteinModelPortal:P62908 SMR:P62908 IntAct:P62908 STRING:P62908
PhosphoSite:P62908 PaxDb:P62908 PRIDE:P62908
Ensembl:ENSMUST00000032998 GeneID:27050 KEGG:mmu:27050
InParanoid:P62908 NextBio:304983 Bgee:P62908 CleanEx:MM_RPS3
Genevestigator:P62908 GermOnline:ENSMUSG00000030744 Uniprot:P62908
Length = 243
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 85/105 (80%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD +GK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 187 KIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 231
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>RGD|619888 [details] [associations]
symbol:Rps3 "ribosomal protein S3" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0003735 "structural constituent of ribosome"
evidence=IC;ISO] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISO] [GO:0004519 "endonuclease activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=ISO]
[GO:0006412 "translation" evidence=IC] [GO:0006917 "induction of
apoptosis" evidence=ISO] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0012505 "endomembrane system" evidence=IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=ISO;IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO;ISS] [GO:0032088 "negative regulation of NF-kappaB
transcription factor activity" evidence=ISO] [GO:0032587 "ruffle
membrane" evidence=ISO] [GO:0045738 "negative regulation of DNA
repair" evidence=ISO] [GO:0051059 "NF-kappaB binding" evidence=ISO]
InterPro:IPR001351 InterPro:IPR004044 InterPro:IPR004087
InterPro:IPR005703 InterPro:IPR009019 InterPro:IPR018280
Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548 PROSITE:PS50823
SMART:SM00322 RGD:619888 GO:GO:0006412 GO:GO:0030425 GO:GO:0012505
GO:GO:0003723 GO:GO:0003735 Gene3D:3.30.300.20 InterPro:IPR015946
GO:GO:0022627 SUPFAM:SSF54814 Gene3D:3.30.1140.32 SUPFAM:SSF54821
eggNOG:COG0092 HOGENOM:HOG000210611 KO:K02985 TIGRFAMs:TIGR01008
CTD:6188 GeneTree:ENSGT00390000008610 HOVERGEN:HBG002195
OMA:CNDYVET OrthoDB:EOG4GXFNJ EMBL:X51536 EMBL:BC088450
IPI:IPI00212776 PIR:S13882 RefSeq:NP_001009239.1 UniGene:Rn.127805
ProteinModelPortal:P62909 SMR:P62909 IntAct:P62909 STRING:P62909
PhosphoSite:P62909 PRIDE:P62909 Ensembl:ENSRNOT00000023935
GeneID:140654 KEGG:rno:140654 UCSC:RGD:619888 InParanoid:P62909
NextBio:620608 Genevestigator:P62909 GermOnline:ENSRNOG00000017418
Uniprot:P62909
Length = 243
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 85/105 (80%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD +GK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 187 KIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 231
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>ZFIN|ZDB-GENE-030131-8494 [details] [associations]
symbol:rps3 "ribosomal protein S3" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0015935 "small
ribosomal subunit" evidence=IEA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001351 InterPro:IPR004044 InterPro:IPR004087
InterPro:IPR005703 InterPro:IPR009019 InterPro:IPR018280
Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548 PROSITE:PS50823
SMART:SM00322 ZFIN:ZDB-GENE-030131-8494 GO:GO:0006412 GO:GO:0003723
GO:GO:0009790 GO:GO:0003735 Gene3D:3.30.300.20 InterPro:IPR015946
SUPFAM:SSF54814 GO:GO:0015935 Gene3D:3.30.1140.32 SUPFAM:SSF54821
KO:K02985 TIGRFAMs:TIGR01008 CTD:6188 HOVERGEN:HBG002195
EMBL:BC045902 IPI:IPI00507986 RefSeq:NP_957447.1 UniGene:Dr.65656
ProteinModelPortal:Q7ZVD9 SMR:Q7ZVD9 STRING:Q7ZVD9 GeneID:336550
KEGG:dre:336550 InParanoid:Q7ZVD9 NextBio:20811799
ArrayExpress:Q7ZVD9 Uniprot:Q7ZVD9
Length = 245
Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
Identities = 89/114 (78%), Positives = 96/114 (84%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKPLAKLGEIPV 113
KIMLPWD +GK GPKKPLPD+V+++EPKEEV T P S Q KP E+PV
Sbjct: 187 KIMLPWDPSGKIGPKKPLPDHVSIVEPKEEVLSTTPVSEQKGAKP-----EVPV 235
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPKEEV P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEVLSTTP 222
>RGD|1560831 [details] [associations]
symbol:RGD1560831 "similar to 40S ribosomal protein S3"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015935
"small ribosomal subunit" evidence=IEA] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005703
InterPro:IPR009019 InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650
PROSITE:PS00548 PROSITE:PS50823 SMART:SM00322 RGD:1560831
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 Gene3D:3.30.300.20
InterPro:IPR015946 SUPFAM:SSF54814 GO:GO:0015935
Gene3D:3.30.1140.32 SUPFAM:SSF54821 TIGRFAMs:TIGR01008
GeneTree:ENSGT00390000008610 OrthoDB:EOG4GXFNJ IPI:IPI00195999
RefSeq:XP_001057158.1 RefSeq:XP_575143.1 PRIDE:D3ZVH2
Ensembl:ENSRNOT00000009988 GeneID:499803 KEGG:rno:499803
UCSC:RGD:1560831 CTD:499803 OMA:RITENTT NextBio:704057
Uniprot:D3ZVH2
Length = 243
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 83/105 (79%), Positives = 93/105 (88%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGA+GCEVVVSGKLRGQRAKS+KFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAEGCEVVVSGKLRGQRAKSVKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
KIMLPWD +GK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 187 KIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 231
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTP 222
>UNIPROTKB|F1NPA9 [details] [associations]
symbol:RPS3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006917
"induction of apoptosis" evidence=IEA] [GO:0006919 "activation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0032088 "negative regulation of NF-kappaB transcription factor
activity" evidence=IEA] [GO:0032587 "ruffle membrane" evidence=IEA]
[GO:0045738 "negative regulation of DNA repair" evidence=IEA]
[GO:0051059 "NF-kappaB binding" evidence=IEA] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005703
InterPro:IPR009019 InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650
PROSITE:PS00548 PROSITE:PS50823 SMART:SM00322 GO:GO:0005634
GO:GO:0006917 GO:GO:0003684 GO:GO:0006412 GO:GO:0003729
GO:GO:0006974 GO:GO:0006919 GO:GO:0003735 GO:GO:0032587
GO:GO:0004519 GO:GO:0032088 GO:GO:0003906 Gene3D:3.30.300.20
InterPro:IPR015946 GO:GO:0022627 SUPFAM:SSF54814
Gene3D:3.30.1140.32 SUPFAM:SSF54821 TIGRFAMs:TIGR01008
GeneTree:ENSGT00390000008610 GO:GO:0045738 EMBL:AADN02055154
IPI:IPI00822610 Ensembl:ENSGALT00000028006 ArrayExpress:F1NPA9
Uniprot:F1NPA9
Length = 211
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 81/94 (86%), Positives = 88/94 (93%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 117 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 176
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPT 94
KIMLPWD +GK GPKKPLPD+V+++EPKEE+ PT
Sbjct: 177 KIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILPT 210
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 30/39 (76%), Positives = 36/39 (92%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNP 154
VLGIKVKIMLPWD +GK GPKKPLPD+V+++EPKEE+ P
Sbjct: 171 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILP 209
>WB|WBGene00004472 [details] [associations]
symbol:rps-3 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0019915 "lipid
storage" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001351 InterPro:IPR004044
InterPro:IPR004087 InterPro:IPR005703 InterPro:IPR009019
InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548
PROSITE:PS50823 SMART:SM00322 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0006412
GO:GO:0018996 GO:GO:0000003 GO:GO:0003723 GO:GO:0019915
GO:GO:0003735 Gene3D:3.30.300.20 InterPro:IPR015946 SUPFAM:SSF54814
GO:GO:0015935 EMBL:FO080630 Gene3D:3.30.1140.32 SUPFAM:SSF54821
eggNOG:COG0092 HOGENOM:HOG000210611 KO:K02985 TIGRFAMs:TIGR01008
GeneTree:ENSGT00390000008610 OMA:CNDYVET PIR:T15579
RefSeq:NP_498349.1 ProteinModelPortal:P48152 SMR:P48152
DIP:DIP-25651N IntAct:P48152 MINT:MINT-1039773 STRING:P48152
PaxDb:P48152 PRIDE:P48152 EnsemblMetazoa:C23G10.3.1
EnsemblMetazoa:C23G10.3.2 EnsemblMetazoa:C23G10.3.3 GeneID:175879
KEGG:cel:CELE_C23G10.3 UCSC:C23G10.3.1 CTD:175879 WormBase:C23G10.3
InParanoid:P48152 NextBio:890122 Uniprot:P48152
Length = 247
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 74/114 (64%), Positives = 88/114 (77%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ A RHV LRQGV+GIKV
Sbjct: 129 MESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKV 188
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGEIPVA 114
KIMLP+D G+ GP+ LPD+V ++EP+EEV P P SQ K K ++P A
Sbjct: 189 KIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQ--HKEEKKDVQVPAA 240
Score = 138 (53.6 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFPQKK 160
V+GIKVKIMLP+D G+ GP+ LPD+V ++EP+EEV P P +
Sbjct: 183 VIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQ 227
>UNIPROTKB|G4MP11 [details] [associations]
symbol:MGG_05673 "40S ribosomal protein S3" species:242507
"Magnaporthe oryzae 70-15" [GO:0043581 "mycelium development"
evidence=IEP] InterPro:IPR001351 InterPro:IPR004044
InterPro:IPR004087 InterPro:IPR005703 InterPro:IPR009019
InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548
PROSITE:PS50823 SMART:SM00322 GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 EMBL:CM001231 GO:GO:0043581 SUPFAM:SSF54814
GO:GO:0015935 Gene3D:3.30.1140.32 SUPFAM:SSF54821 KO:K02985
TIGRFAMs:TIGR01008 RefSeq:XP_003710572.1 ProteinModelPortal:G4MP11
SMR:G4MP11 EnsemblFungi:MGG_05673T0 GeneID:2675978
KEGG:mgr:MGG_05673 Uniprot:G4MP11
Length = 262
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 72/100 (72%), Positives = 79/100 (79%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLR RAKSMKF DG MIHSG P D++++ATRHVLLRQGVLGIKV
Sbjct: 131 MESGAKGCEVVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATRHVLLRQGVLGIKV 190
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTI-PSSQ 99
KIM D GK GP+K LPD V +LEPKEE P + P SQ
Sbjct: 191 KIMRGSDPEGKAGPQKSLPDAVTILEPKEE-QPVVQPVSQ 229
Score = 120 (47.3 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 25/36 (69%), Positives = 27/36 (75%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEE 151
VLGIKVKIM D GK GP+K LPD V +LEPKEE
Sbjct: 185 VLGIKVKIMRGSDPEGKAGPQKSLPDAVTILEPKEE 220
>TAIR|locus:2065863 [details] [associations]
symbol:AT2G31610 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS;IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005773 "vacuole" evidence=IDA] [GO:0022626 "cytosolic
ribosome" evidence=IDA] [GO:0005774 "vacuolar membrane"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005703
InterPro:IPR009019 Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548
PROSITE:PS50823 SMART:SM00322 GO:GO:0009506 GO:GO:0005774
GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006412
GO:GO:0009651 GO:GO:0003723 GO:GO:0003735 UniGene:At.22510
EMBL:AC007071 GO:GO:0022627 UniGene:At.24124 SUPFAM:SSF54814
Gene3D:3.30.1140.32 SUPFAM:SSF54821 eggNOG:COG0092 EMBL:AF378887
EMBL:AY046041 EMBL:AY052749 EMBL:AY054622 EMBL:AY081517
EMBL:AY091208 IPI:IPI00542059 PIR:H84722 RefSeq:NP_180719.1
HSSP:P23396 ProteinModelPortal:Q9SIP7 SMR:Q9SIP7 IntAct:Q9SIP7
STRING:Q9SIP7 PaxDb:Q9SIP7 PRIDE:Q9SIP7 EnsemblPlants:AT2G31610.1
GeneID:817719 KEGG:ath:AT2G31610 TAIR:At2g31610
HOGENOM:HOG000210611 InParanoid:Q9SIP7 KO:K02985 OMA:PEGSVEX
PhylomeDB:Q9SIP7 ProtClustDB:CLSN2683263 Genevestigator:Q9SIP7
GermOnline:AT2G31610 TIGRFAMs:TIGR01008 Uniprot:Q9SIP7
Length = 250
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 70/116 (60%), Positives = 85/116 (73%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEV+VSGKLR RAKSMKF DG M+ SG P +Y++ A RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGEIPVASV 116
KIML WD TGK+GPK PLPD V + PK++V + P+ P+ + E P+ +V
Sbjct: 187 KIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAA--PVTLVQEAPLTTV 240
Score = 135 (52.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/37 (70%), Positives = 30/37 (81%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEV 152
VLGIKVKIML WD TGK+GPK PLPD V + PK++V
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDV 217
>ASPGD|ASPL0000016707 [details] [associations]
symbol:AN4087 species:162425 "Emericella nidulans"
[GO:0006407 "rRNA export from nucleus" evidence=IEA] [GO:0000056
"ribosomal small subunit export from nucleus" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005576 "extracellular region" evidence=IDA]
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0030688
"preribosome, small subunit precursor" evidence=IEA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR001351 InterPro:IPR004044 InterPro:IPR005703
InterPro:IPR009019 InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650
PROSITE:PS00548 GO:GO:0006412 GO:GO:0003723 EMBL:BN001302
GO:GO:0003735 SUPFAM:SSF54814 GO:GO:0015935 EMBL:AACD01000066
Gene3D:3.30.1140.32 SUPFAM:SSF54821 eggNOG:COG0092
HOGENOM:HOG000210611 KO:K02985 TIGRFAMs:TIGR01008 OMA:YRIANAM
OrthoDB:EOG4GTPP2 RefSeq:XP_661691.1 ProteinModelPortal:Q5B5U3
SMR:Q5B5U3 STRING:Q5B5U3 EnsemblFungi:CADANIAT00004594
GeneID:2873506 KEGG:ani:AN4087.2 Uniprot:Q5B5U3
Length = 264
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 70/100 (70%), Positives = 80/100 (80%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLR RAKSMKF DG MIHSG P +++++ATRHVLLRQGVLGIKV
Sbjct: 128 MESGAKGCEVVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDSATRHVLLRQGVLGIKV 187
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTI-PSSQ 99
KIM D GK GP+K LPD+V ++EPKEE P + P SQ
Sbjct: 188 KIMRGSDPEGKAGPQKTLPDSVTIIEPKEE-QPVLQPISQ 226
Score = 121 (47.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEE 151
VLGIKVKIM D GK GP+K LPD+V ++EPKEE
Sbjct: 182 VLGIKVKIMRGSDPEGKAGPQKTLPDSVTIIEPKEE 217
>TAIR|locus:2084490 [details] [associations]
symbol:AT3G53870 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS;IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005703
InterPro:IPR009019 Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548
PROSITE:PS50823 SMART:SM00322 GO:GO:0009506 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0016020 GO:GO:0006412 GO:GO:0009651
GO:GO:0003723 GO:GO:0003735 EMBL:AL132960 GO:GO:0022627
UniGene:At.24124 SUPFAM:SSF54814 Gene3D:3.30.1140.32
SUPFAM:SSF54821 eggNOG:COG0092 HSSP:P23396 HOGENOM:HOG000210611
KO:K02985 ProtClustDB:CLSN2683263 TIGRFAMs:TIGR01008 EMBL:AF428405
EMBL:AY035022 EMBL:AY059090 EMBL:AY088808 IPI:IPI00527953
PIR:T45927 RefSeq:NP_190955.1 ProteinModelPortal:Q9M339 SMR:Q9M339
IntAct:Q9M339 STRING:Q9M339 PaxDb:Q9M339 PRIDE:Q9M339
EnsemblPlants:AT3G53870.1 GeneID:824554 KEGG:ath:AT3G53870
TAIR:At3g53870 InParanoid:Q9M339 OMA:TIRRIMN PhylomeDB:Q9M339
Genevestigator:Q9M339 GermOnline:AT3G53870 Uniprot:Q9M339
Length = 249
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 70/116 (60%), Positives = 84/116 (72%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEV+VSGKLR RAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGEIPVASV 116
K+ML WD G +GPK PLPD V + PKEE P+ QV P A + + P+ +V
Sbjct: 187 KVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPA-QVA-APAALVADAPLTAV 240
Score = 123 (48.4 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 24/36 (66%), Positives = 27/36 (75%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEE 151
VLGIKVK+ML WD G +GPK PLPD V + PKEE
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEE 216
>TAIR|locus:2169518 [details] [associations]
symbol:AT5G35530 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0009651 "response to salt stress" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005703
InterPro:IPR009019 Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548
PROSITE:PS50823 SMART:SM00322 GO:GO:0009506 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0016020 GO:GO:0006412
GO:GO:0009651 GO:GO:0003723 GO:GO:0003735 Gene3D:3.30.300.20
InterPro:IPR015946 GO:GO:0022627 SUPFAM:SSF54814 EMBL:AB015477
Gene3D:3.30.1140.32 SUPFAM:SSF54821 HSSP:P23396
HOGENOM:HOG000210611 KO:K02985 ProtClustDB:CLSN2683263
TIGRFAMs:TIGR01008 EMBL:AY058057 EMBL:AY098949 IPI:IPI00539202
RefSeq:NP_198403.1 UniGene:At.23305 ProteinModelPortal:Q9FJA6
SMR:Q9FJA6 STRING:Q9FJA6 PRIDE:Q9FJA6 EnsemblPlants:AT5G35530.1
GeneID:833518 KEGG:ath:AT5G35530 TAIR:At5g35530 InParanoid:Q9FJA6
OMA:YRIANAM PhylomeDB:Q9FJA6 Genevestigator:Q9FJA6
GermOnline:AT5G35530 Uniprot:Q9FJA6
Length = 248
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 68/115 (59%), Positives = 83/115 (72%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEV+VSGKLR RAKSMKF DG M+ SG P +Y++ A RHVLLRQGVLG+KV
Sbjct: 127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLAKLGEIPVAS 115
KIML WD GK GP PLPD V + PKE+ + I +QV+ + A + E P+ +
Sbjct: 187 KIMLDWDPKGKQGPMTPLPDVVIIHTPKED-DVYIAPAQVVTQA-AFVPEAPLTT 239
Score = 118 (46.6 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 23/36 (63%), Positives = 26/36 (72%)
Query: 116 VLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEE 151
VLG+KVKIML WD GK GP PLPD V + PKE+
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKED 216
>POMBASE|SPBC16G5.14c [details] [associations]
symbol:rps3 "40S ribosomal protein S3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISO] InterPro:IPR001351 InterPro:IPR004044
InterPro:IPR004087 InterPro:IPR005703 InterPro:IPR009019
InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548
PROSITE:PS50823 SMART:SM00322 PomBase:SPBC16G5.14c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0003735 GO:GO:0002181
GO:GO:0022627 SUPFAM:SSF54814 Gene3D:3.30.1140.32 SUPFAM:SSF54821
eggNOG:COG0092 HOGENOM:HOG000210611 KO:K02985 TIGRFAMs:TIGR01008
OMA:YRIANAM EMBL:AB264328 PIR:T39606 RefSeq:NP_596763.1
ProteinModelPortal:O60128 SMR:O60128 IntAct:O60128 STRING:O60128
PRIDE:O60128 EnsemblFungi:SPBC16G5.14c.1 GeneID:2539797
KEGG:spo:SPBC16G5.14c OrthoDB:EOG4GTPP2 NextBio:20800946
Uniprot:O60128
Length = 249
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 69/105 (65%), Positives = 82/105 (78%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
ME+GAKGCEVV+SGKLR RAKSMKF DG MIHSG P D++++ATRHVLLRQGVLG+KV
Sbjct: 129 MEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKV 188
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPL 105
KIMLP KT KK LPD V VL+PKEE T P + V+++P+
Sbjct: 189 KIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKPYT-VINQPV 229
>SGD|S000005122 [details] [associations]
symbol:RPS3 "Protein component of the small (40S) ribosomal
subunit, has apurinic/" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030688 "preribosome,
small subunit precursor" evidence=IDA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000056 "ribosomal small subunit export from nucleus"
evidence=IGI] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015935 "small
ribosomal subunit" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030686 "90S preribosome" evidence=IDA]
[GO:0002181 "cytoplasmic translation" evidence=IC] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0006407 "rRNA
export from nucleus" evidence=IMP] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IDA] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005703
InterPro:IPR009019 InterPro:IPR018280 Pfam:PF00189 Pfam:PF07650
PROSITE:PS00548 PROSITE:PS50823 SMART:SM00322 SGD:S000005122
EMBL:BK006947 GO:GO:0003723 GO:GO:0003735 GO:GO:0002181
GO:GO:0003906 KO:K03348 RefSeq:NP_014227.4 GeneID:855549
KEGG:sce:YNL172W GO:GO:0000056 GO:GO:0030686 PDB:1S1H PDBsum:1S1H
GO:GO:0022627 GO:GO:0030688 SUPFAM:SSF54814 PDB:3IZB PDB:3O2Z
PDB:3O30 PDB:3U5C PDB:3U5G PDBsum:3IZB PDBsum:3O2Z PDBsum:3O30
PDBsum:3U5C PDBsum:3U5G GO:GO:0006407 Gene3D:3.30.1140.32
SUPFAM:SSF54821 eggNOG:COG0092 PDB:1K5X PDBsum:1K5X
HOGENOM:HOG000210611 KO:K02985 TIGRFAMs:TIGR01008 OMA:YRIANAM
GeneTree:ENSGT00390000008610 OrthoDB:EOG4GTPP2 EMBL:U34347
EMBL:D25285 EMBL:L31405 EMBL:Z71454 PIR:S48510 RefSeq:NP_014221.3
ProteinModelPortal:P05750 SMR:P05750 DIP:DIP-4328N IntAct:P05750
MINT:MINT-512497 STRING:P05750 UCD-2DPAGE:P05750 PaxDb:P05750
PeptideAtlas:P05750 PRIDE:P05750 EnsemblFungi:YNL178W GeneID:855543
KEGG:sce:YNL178W EvolutionaryTrace:P05750 NextBio:979610
Genevestigator:P05750 GermOnline:YNL178W Uniprot:P05750
Length = 240
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 66/97 (68%), Positives = 76/97 (78%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEVVVSGKLR RAK+MKF DG +IHSG P ND+++TATRHVL+RQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKV 186
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPS 97
KIM + +TGPK LPD V ++EPKEE PS
Sbjct: 187 KIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPILAPS 221
>GENEDB_PFALCIPARUM|PF14_0627 [details] [associations]
symbol:PF14_0627 "ribosomal protein S3,
putative" species:5833 "Plasmodium falciparum" [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISS]
InterPro:IPR001351 InterPro:IPR004044 InterPro:IPR004087
InterPro:IPR005703 InterPro:IPR009019 Pfam:PF00189 Pfam:PF07650
PROSITE:PS50823 SMART:SM00322 GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 EMBL:AE014187 GO:GO:0022627 SUPFAM:SSF54814
Gene3D:3.30.1140.32 SUPFAM:SSF54821 HOGENOM:HOG000210611 KO:K02985
TIGRFAMs:TIGR01008 OMA:CNDYVET ProtClustDB:PTZ00084
RefSeq:XP_001348801.1 ProteinModelPortal:Q8IKH8 SMR:Q8IKH8
PRIDE:Q8IKH8 EnsemblProtists:PF14_0627:mRNA GeneID:812209
KEGG:pfa:PF14_0627 EuPathDB:PlasmoDB:PF3D7_1465900 Uniprot:Q8IKH8
Length = 221
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 60/90 (66%), Positives = 70/90 (77%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEV+VSGKLR QRAKSMKF DG +I +G+P +VNTATR L+QGVLGIKV
Sbjct: 128 MESGAKGCEVIVSGKLRAQRAKSMKFRDGYLISTGEPSKRFVNTATRSAQLKQGVLGIKV 187
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEE 90
KIMLP +TG LPDN++VLEPK +
Sbjct: 188 KIMLPTAIDTRTGLTSILPDNISVLEPKTD 217
>UNIPROTKB|Q8IKH8 [details] [associations]
symbol:PF14_0627 "40S ribosomal protein S3, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005703
InterPro:IPR009019 Pfam:PF00189 Pfam:PF07650 PROSITE:PS50823
SMART:SM00322 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
EMBL:AE014187 GO:GO:0022627 SUPFAM:SSF54814 Gene3D:3.30.1140.32
SUPFAM:SSF54821 HOGENOM:HOG000210611 KO:K02985 TIGRFAMs:TIGR01008
OMA:CNDYVET ProtClustDB:PTZ00084 RefSeq:XP_001348801.1
ProteinModelPortal:Q8IKH8 SMR:Q8IKH8 PRIDE:Q8IKH8
EnsemblProtists:PF14_0627:mRNA GeneID:812209 KEGG:pfa:PF14_0627
EuPathDB:PlasmoDB:PF3D7_1465900 Uniprot:Q8IKH8
Length = 221
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 60/90 (66%), Positives = 70/90 (77%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
MESGAKGCEV+VSGKLR QRAKSMKF DG +I +G+P +VNTATR L+QGVLGIKV
Sbjct: 128 MESGAKGCEVIVSGKLRAQRAKSMKFRDGYLISTGEPSKRFVNTATRSAQLKQGVLGIKV 187
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEE 90
KIMLP +TG LPDN++VLEPK +
Sbjct: 188 KIMLPTAIDTRTGLTSILPDNISVLEPKTD 217
>CGD|CAL0001259 [details] [associations]
symbol:RPS3 species:5476 "Candida albicans" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0030688
"preribosome, small subunit precursor" evidence=IEA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IEA] [GO:0006407 "rRNA
export from nucleus" evidence=IEA] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR005703 InterPro:IPR009019
Pfam:PF00189 Pfam:PF07650 PROSITE:PS50823 CGD:CAL0001259
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF54814
GO:GO:0015935 EMBL:AACQ01000214 EMBL:AACQ01000213
Gene3D:3.30.1140.32 SUPFAM:SSF54821 eggNOG:COG0092
HOGENOM:HOG000210611 KO:K02985 TIGRFAMs:TIGR01008
RefSeq:XP_711097.1 RefSeq:XP_711114.1 ProteinModelPortal:Q59N00
SMR:Q59N00 STRING:Q59N00 GeneID:3647287 GeneID:3647299
KEGG:cal:CaO19.13689 KEGG:cal:CaO19.6312 Uniprot:Q59N00
Length = 251
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 56/100 (56%), Positives = 70/100 (70%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M +GAKG EVV+SGKLR RAKS K+ DG MIHSG P D+++ A RHVL+RQGVLGIKV
Sbjct: 128 MGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGIKV 187
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQV 100
KIM + + GP+ LPD V + E K+E + IP+ V
Sbjct: 188 KIMKD-PAANRFGPRA-LPDAVKIAEAKDE-DEVIPAPTV 224
>DICTYBASE|DDB_G0293000 [details] [associations]
symbol:rps3 "40S ribosomal protein S3" species:44689
"Dictyostelium discoideum" [GO:0005615 "extracellular space"
evidence=IDA] [GO:0045335 "phagocytic vesicle" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0015935 "small
ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001351
InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005703
InterPro:IPR009019 Pfam:PF00189 Pfam:PF07650 PROSITE:PS00548
PROSITE:PS50823 SMART:SM00322 dictyBase:DDB_G0293000 GO:GO:0005615
GO:GO:0045335 GenomeReviews:CM000155_GR GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 EMBL:AAFI02000199 SUPFAM:SSF54814 GO:GO:0015935
Gene3D:3.30.1140.32 SUPFAM:SSF54821 eggNOG:COG0092 HSSP:P23396
KO:K02985 TIGRFAMs:TIGR01008 OMA:CNDYVET EMBL:U78756
RefSeq:XP_629347.1 ProteinModelPortal:P90526 SMR:P90526
STRING:P90526 PRIDE:P90526 EnsemblProtists:DDB0201667
GeneID:8629071 KEGG:ddi:DDB_G0293000 InParanoid:P90526
ProtClustDB:PTZ00084 Uniprot:P90526
Length = 218
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 55/84 (65%), Positives = 61/84 (72%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
M GAKGCEV+VSGKLR QRAKSMKF DG MI SG P D+++ A RHVLLRQG LG+KV
Sbjct: 130 MTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRHVLLRQGTLGVKV 189
Query: 61 KIMLPWDSTGKT-GPKK-PLPDNV 82
IMLP+D T K G P PD V
Sbjct: 190 AIMLPYDETRKIHGACNIPQPDVV 213
>UNIPROTKB|E9PPU1 [details] [associations]
symbol:RPS3 "40S ribosomal protein S3" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004044
InterPro:IPR004087 InterPro:IPR009019 Pfam:PF07650 PROSITE:PS50823
SMART:SM00322 GO:GO:0003723 Gene3D:3.30.300.20 InterPro:IPR015946
SUPFAM:SSF54814 ChiTaRS:RpS3 HGNC:HGNC:10420 EMBL:AP000744
IPI:IPI00984887 ProteinModelPortal:E9PPU1 SMR:E9PPU1 PRIDE:E9PPU1
Ensembl:ENST00000534440 ArrayExpress:E9PPU1 Bgee:E9PPU1
Uniprot:E9PPU1
Length = 158
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 37/53 (69%), Positives = 44/53 (83%)
Query: 53 QGVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP 104
+GVLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ PT P S Q KP
Sbjct: 94 RGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKP 146
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 31/48 (64%), Positives = 39/48 (81%)
Query: 110 EIPVASVLGIKVKIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPAFP 157
++ VLGIKVKIMLPWD TGK GPKKPLPD+V+++EPK+E+ P P
Sbjct: 90 KVATRGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 137
>UNIPROTKB|D4AAX0 [details] [associations]
symbol:D4AAX0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR001351 InterPro:IPR009019 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 SUPFAM:SSF54814
Gene3D:3.30.1140.32 SUPFAM:SSF54821 GeneTree:ENSGT00390000008610
EMBL:AC111678 IPI:IPI00391156 Ensembl:ENSRNOT00000038678
Uniprot:D4AAX0
Length = 222
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 54/117 (46%), Positives = 70/117 (59%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 60
ME GAKGCEVVV+GKL+ K D N YV+T HVLLRQG+L IKV
Sbjct: 125 MERGAKGCEVVVTGKLQ-----DCKRAD---------VNYYVDTCVCHVLLRQGMLSIKV 170
Query: 61 KIMLPWDSTGKTGPKKPLPDNVNVLEPKEEVNPTIP-SSQVLDKP-LAKLGE-IPVA 114
K+MLPWD +GK PL D+++ +E E+ PT P S Q KP L+ + + +P+A
Sbjct: 171 KLMLPWDPSGK-----PLLDSMSTMELNVEILPTTPISKQQGGKPELSVMPQPLPIA 222
>UNIPROTKB|E9PJN9 [details] [associations]
symbol:RPS3 "40S ribosomal protein S3" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR001351 Pfam:PF00189
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.1140.32
SUPFAM:SSF54821 ChiTaRS:RpS3 HGNC:HGNC:10420 EMBL:AP000744
IPI:IPI00855830 ProteinModelPortal:E9PJN9 SMR:E9PJN9
Ensembl:ENST00000528847 ArrayExpress:E9PJN9 Bgee:E9PJN9
Uniprot:E9PJN9
Length = 36
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 36/36 (100%), Positives = 36/36 (100%)
Query: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGD 36
MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGD
Sbjct: 1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGD 36
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.134 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 214 214 0.00085 112 3 11 23 0.43 33
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 593 (63 KB)
Total size of DFA: 167 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.15u 0.09s 20.24t Elapsed: 00:00:12
Total cpu time: 20.15u 0.09s 20.24t Elapsed: 00:00:12
Start: Thu Aug 15 12:54:27 2013 End: Thu Aug 15 12:54:39 2013