RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17945
         (214 letters)



>d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal
          domain {Thermus thermophilus [TaxId: 274]}
          Length = 101

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 1  MESGAKGCEVVVSGKLRGQRAKSMKFV-DGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 59
          MESGAKG +V+VSG++ G      ++   G +          ++          GVLG+K
Sbjct: 36 MESGAKGAKVIVSGRIGGAEQARTEWAAQGRV--PLHTLRANIDYGFALARTTYGVLGVK 93

Query: 60 VKIMLP 65
            I L 
Sbjct: 94 AYIFLG 99


>d2qalc2 d.53.1.1 (C:106-206) Ribosomal protein S3 C-terminal
          domain {Escherichia coli [TaxId: 562]}
          Length = 101

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 1  MESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 59
          M  GAKG +V VSG+L G + A++  + +G +       +  ++  T       GV+G+K
Sbjct: 36 MRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRAD--IDYNTSEAHTTYGVIGVK 93

Query: 60 VKIMLP 65
          V I   
Sbjct: 94 VWIFKG 99


>d1zv9a1 b.2.2.2 (A:3-173) Cellulosomal scaffoldin adaptor protein
           B, ScaB {Acetivibrio cellulolyticus [TaxId: 35830]}
          Length = 171

 Score = 26.3 bits (58), Expect = 2.3
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 17/71 (23%)

Query: 96  PSSQV---LDKPLAKLGEIPVASV------------LGIKV--KIMLPWDSTGKTGPKKP 138
           P+S +   LDK  A +GEI  AS+            L +K    ++ P  S+G    K  
Sbjct: 1   PTSSIEIVLDKTTASVGEIVTASINIKNITNFSGCQLNMKYDPAVLQPVTSSGVAYTKST 60

Query: 139 LPDNVNVLEPK 149
           +P    +L   
Sbjct: 61  MPGAGTILNSD 71


>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score = 25.3 bits (55), Expect = 6.2
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 3/59 (5%)

Query: 145 VLEPKEEVNPA--FPQKKLPFKTASLYLAGMLIA-IWMSVQSLMGANKNPEDKPYLFRI 200
            L P  E  P    P K++ FK    +   +L+    M    +  A          ++ 
Sbjct: 2   KLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEFWQT 60


>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
           subunit I {Thermus thermophilus [TaxId: 274]}
          Length = 549

 Score = 25.0 bits (54), Expect = 9.0
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 166 ASLYLAGMLIAIWMSVQSLMGANKNPED 193
             + L  +L+ I+     L+   + PE 
Sbjct: 461 GIVLLVALLLFIYGLFSVLLSRERKPEL 488


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 781,719
Number of extensions: 34375
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 7
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)