BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17946
         (223 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Z1P6|NDUA7_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 OS=Mus
           musculus GN=Ndufa7 PE=1 SV=3
          Length = 113

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 110 LRFQDYNIVPRTQPLPNLPEGPHHVLSANYYVNRDGSHEVKPPATLYLANAA 161
           LR+Q+  I  RTQP P LP GP H LS NYY  RDG  EV PP+ +  +  A
Sbjct: 26  LRYQE--IAKRTQPPPKLPVGPSHKLSNNYYCTRDGRREVVPPSIIMSSQKA 75


>sp|Q05752|NDUA7_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 OS=Bos
           taurus GN=NDUFA7 PE=1 SV=2
          Length = 113

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 110 LRFQDYNIVPRTQPLPNLPEGPHHVLSANYYVNRDGSHEVKPPA 153
           LR+Q+  I  RTQP P LP GP H LS NYY  RDG  E  PP+
Sbjct: 26  LRYQE--ISKRTQPPPKLPVGPSHKLSNNYYCTRDGRREAMPPS 67


>sp|Q0MQA6|NDUA7_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7
           OS=Pongo pygmaeus GN=NDUFA7 PE=3 SV=3
          Length = 113

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 110 LRFQDYNIVPRTQPLPNLPEGPHHVLSANYYVNRDGSHEVKPPATLYLANAA 161
           LR+Q+  I  RTQP P LP GP H LS NYY  RDG  E  PP+ +  +  A
Sbjct: 26  LRYQE--ISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKA 75


>sp|Q0MQA7|NDUA7_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7
           OS=Gorilla gorilla gorilla GN=NDUFA7 PE=3 SV=3
          Length = 113

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 110 LRFQDYNIVPRTQPLPNLPEGPHHVLSANYYVNRDGSHEVKPPATLYLANAA 161
           LR+Q+  I  RTQP P LP GP H LS NYY  RDG  E  PP+ +  +  A
Sbjct: 26  LRYQE--ISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKA 75


>sp|Q0MQA8|NDUA7_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 OS=Pan
           troglodytes GN=NDUFA7 PE=3 SV=3
          Length = 113

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 110 LRFQDYNIVPRTQPLPNLPEGPHHVLSANYYVNRDGSHEVKPPATLYLANAA 161
           LR+Q+  I  RTQP P LP GP H LS NYY  RDG  E  PP+ +  +  A
Sbjct: 26  LRYQE--ISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKA 75


>sp|O95182|NDUA7_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7
           OS=Homo sapiens GN=NDUFA7 PE=1 SV=3
          Length = 113

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 110 LRFQDYNIVPRTQPLPNLPEGPHHVLSANYYVNRDGSHEVKPPATLYLANAA 161
           LR+Q+  I  RTQP P LP GP H LS NYY  RDG  E  PP+ +  +  A
Sbjct: 26  LRYQE--ISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKA 75


>sp|A5GIW5|CAPP_SYNPW Phosphoenolpyruvate carboxylase OS=Synechococcus sp. (strain
           WH7803) GN=ppc PE=3 SV=1
          Length = 1003

 Score = 31.6 bits (70), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 47  DLLKTKRGISKTKIERIDTLQNAGAR-TVVDNELIGRWYWHRLIARLARLLGTKRRYKVV 105
           ++L +K  + +  +  ++T+  A  + ++V N+L     W+ L+ARLAR   ++R Y+ +
Sbjct: 715 EVLASKYSLPELALYNLETVSTAVVQNSLVTNQLDATPSWNDLMARLARC--SRRHYRAL 772

Query: 106 V-DNP 109
           V DNP
Sbjct: 773 VHDNP 777


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,875,447
Number of Sequences: 539616
Number of extensions: 3260858
Number of successful extensions: 6167
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6161
Number of HSP's gapped (non-prelim): 11
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)