Query psy17946
Match_columns 223
No_of_seqs 71 out of 73
Neff 1.9
Searched_HMMs 29240
Date Fri Aug 16 18:21:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v8f_C MDIA1, profilin IIA; al 31.1 21 0.00071 22.1 1.4 13 121-133 13-25 (26)
2 1kbe_A Kinase suppressor of RA 17.5 71 0.0024 21.0 2.0 29 10-40 4-32 (49)
3 2lug_A Myelin basic protein; i 17.4 35 0.0012 22.4 0.5 10 116-125 19-28 (36)
4 1wa7_B TIP, hypothetical 28.7 17.1 63 0.0022 19.9 1.6 12 122-133 5-16 (26)
5 2z5k_B Nuclear RNA export fact 16.9 64 0.0022 19.8 1.6 19 103-121 11-29 (30)
6 2zwu_A Camphor 5-monooxygenase 14.3 57 0.0019 27.0 1.1 14 120-133 5-18 (415)
7 1ymm_C MBP peptide, HLA class 14.3 55 0.0019 20.2 0.8 14 112-126 8-21 (26)
8 2lf0_A Uncharacterized protein 13.1 12 0.00041 30.0 -3.1 19 189-207 100-118 (123)
9 2e0g_A Chromosomal replication 12.6 3.3E+02 0.011 18.9 4.7 64 68-134 34-100 (107)
10 1rj8_A Ectodysplasin-A isoform 12.5 49 0.0017 25.8 0.2 28 122-158 3-30 (164)
No 1
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=31.12 E-value=21 Score=22.13 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCC
Q psy17946 121 TQPLPNLPEGPHH 133 (223)
Q Consensus 121 TQPPPnLP~GPsH 133 (223)
-.|||.||++++.
T Consensus 13 iPpPpplPg~~s~ 25 (26)
T 2v8f_C 13 IPPPPPLPGXXXX 25 (26)
T ss_pred CCCCCCCCCcccc
Confidence 4678888888864
No 2
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=17.48 E-value=71 Score=20.99 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=22.2
Q ss_pred cceeEEeeeeccccccccccceeeeeeeecc
Q psy17946 10 LHHFQLFTMVPQHWCSFESSIEYFGLVQCEE 40 (223)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (223)
-|.|..-+..+ -+|..=...-+|| ++|++
T Consensus 4 ~HrF~~~t~~~-t~C~~C~k~i~~G-~kC~~ 32 (49)
T 1kbe_A 4 THRFSTKSWLS-QVCNVCQKSMIFG-VKCKH 32 (49)
T ss_dssp CCCEEEECCSS-CCCSSSCCSSCCE-EEETT
T ss_pred CcccCccCCCC-cCccccCceeECc-CCCCC
Confidence 47888877777 7898877766889 58975
No 3
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=17.44 E-value=35 Score=22.38 Aligned_cols=10 Identities=40% Similarity=0.687 Sum_probs=7.4
Q ss_pred CCCCCCCCCC
Q psy17946 116 NIVPRTQPLP 125 (223)
Q Consensus 116 ~IS~RTQPPP 125 (223)
-+|+||+||-
T Consensus 19 ivsprtppp~ 28 (36)
T 2lug_A 19 IVTPRTPPPS 28 (36)
T ss_dssp HHCSSCCCCC
T ss_pred ccCCCCCCCc
Confidence 3789997764
No 4
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=17.15 E-value=63 Score=19.94 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCC
Q psy17946 122 QPLPNLPEGPHH 133 (223)
Q Consensus 122 QPPPnLP~GPsH 133 (223)
-|+|.||.-|..
T Consensus 5 ~P~P~LPpRPaN 16 (26)
T 1wa7_B 5 MPTPPLPPRPAN 16 (26)
T ss_dssp CCCCCCCCCTTS
T ss_pred CCCCCCCCCccc
Confidence 589999998864
No 5
>2z5k_B Nuclear RNA export factor 1; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, TAP, NLS; 2.60A {Homo sapiens} PDB: 2z5m_B
Probab=16.91 E-value=64 Score=19.85 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=13.9
Q ss_pred ccccCCCccCCCCCCCCCC
Q psy17946 103 KVVVDNPLRFQDYNIVPRT 121 (223)
Q Consensus 103 ka~~kl~LRYaD~~IS~RT 121 (223)
++....+.||.+|.+.++.
T Consensus 11 d~~~~~~~RytPY~~~~~~ 29 (30)
T 2z5k_B 11 DAQDGPRVRYNPYTTRPNR 29 (30)
T ss_pred ccccCccccccCccccccC
Confidence 3555788899998877653
No 6
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=14.33 E-value=57 Score=27.02 Aligned_cols=14 Identities=36% Similarity=0.366 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCCC
Q psy17946 120 RTQPLPNLPEGPHH 133 (223)
Q Consensus 120 RTQPPPnLP~GPsH 133 (223)
|.+.+++||+||.|
T Consensus 5 ~~~~~~~~~~~p~~ 18 (415)
T 2zwu_A 5 TIQSNANLAPLPPH 18 (415)
T ss_dssp ------CCCCCCTT
T ss_pred cccCccccCCCCCC
Confidence 56788889998877
No 7
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=14.27 E-value=55 Score=20.24 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCC
Q psy17946 112 FQDYNIVPRTQPLPN 126 (223)
Q Consensus 112 YaD~~IS~RTQPPPn 126 (223)
|.+ -+|+||+|++.
T Consensus 8 FKN-ivspr~pp~~q 21 (26)
T 1ymm_C 8 FKN-IVTPRGGSGGG 21 (26)
T ss_pred hhh-ccCCCCCCCCc
Confidence 455 68999988753
No 8
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=13.07 E-value=12 Score=30.02 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=14.6
Q ss_pred hhheeeccceEEEEEEEee
Q psy17946 189 SHVMTRVGREVKISVVTEV 207 (223)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~ 207 (223)
-|-||.+|||..+.+||-.
T Consensus 100 VHPMTaLGRemgLk~mTGf 118 (123)
T 2lf0_A 100 VHPMTALGREMGLEEMTGF 118 (123)
T ss_dssp ECSSSHHHHHTTCSSCEEE
T ss_pred ecCchHHHHHcCccccccc
Confidence 3778888888888877743
No 9
>2e0g_A Chromosomal replication initiator protein DNAA; domain structure, structural genomics, NPPSFA; NMR {Escherichia coli K12}
Probab=12.62 E-value=3.3e+02 Score=18.88 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=35.5
Q ss_pred ccCcceeeccchhhhhhHHHHHHHHHHHh---ccccccccccCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17946 68 NAGARTVVDNELIGRWYWHRLIARLARLL---GTKRRYKVVVDNPLRFQDYNIVPRTQPLPNLPEGPHHV 134 (223)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~fI~~LRdFL---~GRkh~ka~~kl~LRYaD~~IS~RTQPPPnLP~GPsHK 134 (223)
+.-+.-.|.|+.+..|.-.++...|.+.| .|+.-.++.+.. .=.+ .-.+.+++.|..|.-+.|.
T Consensus 34 ~~~l~l~vPn~F~~~wie~~y~~~I~~~l~~~~g~~~~~i~~~v--~~~~-~~~~~~~~~~~~~~~~~~~ 100 (107)
T 2e0g_A 34 DNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEV--GTKP-VTQTPQAAVTSNVAAPAQV 100 (107)
T ss_dssp SSEEEEEESSHHHHHHHHHTHHHHHHHHHHHHTSSSCCEECCEE--SSCC-CCCCCCCCCCCCCCCCCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhCCCceeEEEEE--CCCC-CCCCCCCCCCCCCCcchhh
Confidence 33356678999999997766666665554 343210111111 0022 2335666677777776665
No 10
>1rj8_A Ectodysplasin-A isoform EDA-A2; TNF domain, jelly roll, splice variant, trimer, hormone-GROW complex; 2.23A {Homo sapiens} SCOP: b.22.1.1 PDB: 1rj7_A
Probab=12.51 E-value=49 Score=25.77 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=4.6
Q ss_pred CCCCCCCCCCCCCcccceeeccCCCCCCCCCeEEEec
Q psy17946 122 QPLPNLPEGPHHVLSANYYVNRDGSHEVKPPATLYLA 158 (223)
Q Consensus 122 QPPPnLP~GPsHKLS~NYYYtRDaRREV~PPI~I~~~ 158 (223)
.|-+.+|.|+.-| |.+||.+||..-..+
T Consensus 3 ~~~~~~~~~~~~~---------~~~~~~~pa~~HL~g 30 (164)
T 1rj8_A 3 HMGLQGPSGAADK---------AGTRENQPAVVHLQG 30 (164)
T ss_dssp -----------------------------CEEEEEEC
T ss_pred CCCCCCCCCCccc---------ccccccCCceEEEeC
Confidence 4667889998888 999999997555543
Done!