Query psy17946
Match_columns 223
No_of_seqs 71 out of 73
Neff 1.9
Searched_HMMs 13730
Date Fri Aug 16 18:21:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17946.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17946hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1faqa_ g.49.1.1 (A:) RAF-1 {H 29.4 12 0.00084 22.7 1.6 30 10-40 3-32 (52)
2 d3b7sa1 a.118.1.7 (A:461-610) 21.8 14 0.001 27.1 1.2 52 45-98 42-100 (150)
3 d2cg4a1 a.4.5.32 (A:4-66) Regu 20.3 15 0.0011 22.7 0.9 35 47-81 23-62 (63)
4 d1kbea_ g.49.1.1 (A:) Kinase s 19.6 32 0.0023 21.0 2.3 31 8-40 2-32 (49)
5 d3b5ea1 c.69.1.14 (A:7-215) Un 11.6 38 0.0027 23.2 1.1 37 62-98 172-208 (209)
6 d1rihh1 b.1.1.1 (H:1-113) Immu 11.1 29 0.0021 24.9 0.4 12 136-147 91-102 (125)
7 d2hepa1 a.2.21.1 (A:1-42) Hypo 9.9 33 0.0024 21.5 0.3 14 55-68 2-15 (42)
8 d1n0xh1 b.1.1.1 (H:1-113) Immu 9.5 53 0.0039 23.8 1.4 14 136-149 91-104 (127)
9 d1jzua_ b.60.1.1 (A:) Lipocali 9.3 22 0.0016 23.1 -0.8 12 74-85 3-15 (157)
10 d1k1va_ a.37.1.1 (A:) Mafg {Mo 8.7 51 0.0037 20.5 0.9 24 47-70 13-40 (41)
No 1
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.39 E-value=12 Score=22.71 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=24.4
Q ss_pred cceeEEeeeeccccccccccceeeeeeeecc
Q psy17946 10 LHHFQLFTMVPQHWCSFESSIEYFGLVQCEE 40 (223)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (223)
-|.|+..+.....+|++=..+-++| ++|++
T Consensus 3 ~H~F~~~~f~~~~~C~~C~~~i~~g-~~C~~ 32 (52)
T d1faqa_ 3 THNFARKTFLKLAFCDICQKFLLNG-FRCQT 32 (52)
T ss_dssp CCCCEEECCSSCEECTTSSSEECSE-EECTT
T ss_pred ceEEEEeeCCCCcCCccCCCccccC-CCcCC
Confidence 4889999988889999877777777 57764
No 2
>d3b7sa1 a.118.1.7 (A:461-610) Leukotriene A4 hydrolase C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.79 E-value=14 Score=27.05 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=39.9
Q ss_pred hhhhhhhccCCcccchhhhhhhhccCcceeeccchhhhhh-------HHHHHHHHHHHhcc
Q psy17946 45 FFDLLKTKRGISKTKIERIDTLQNAGARTVVDNELIGRWY-------WHRLIARLARLLGT 98 (223)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~fI~~LRdFL~G 98 (223)
|.+.|-.+..++...++.+|..-+ ....-+.|+.-||| |-+.+..+.+||..
T Consensus 42 FL~~L~~~~~l~~~~l~~Ld~~Y~--ls~s~N~EI~~rW~~l~i~~~~~~~~~~v~~fL~~ 100 (150)
T d3b7sa1 42 FLAQTLQRAPLPLGHIKRMQEVYN--FNAINNSEIRFRWLRLCIQSKWEDAIPLALKMATE 100 (150)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHC--GGGCCCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 667665566788889999998774 44556899999998 45677889999973
No 3
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=20.33 E-value=15 Score=22.68 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=26.6
Q ss_pred hhhhhccCCcccch-hhhhhhhccCc----ceeeccchhh
Q psy17946 47 DLLKTKRGISKTKI-ERIDTLQNAGA----RTVVDNELIG 81 (223)
Q Consensus 47 ~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~ 81 (223)
.-|..+-|+|.+.+ .||+.|++.|. ..++|.+-+|
T Consensus 23 ~eiA~~l~ls~~~v~~Ri~rL~~~GiI~~~~~~id~~~lG 62 (63)
T d2cg4a1 23 AELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQLG 62 (63)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTTTTT
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEeEEEEECHHHcC
Confidence 34566778888776 68999999984 5678887776
No 4
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.57 E-value=32 Score=20.98 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=23.1
Q ss_pred CccceeEEeeeeccccccccccceeeeeeeecc
Q psy17946 8 GRLHHFQLFTMVPQHWCSFESSIEYFGLVQCEE 40 (223)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (223)
+.-|.|+.-+..+. +|++=..+-++| ++|++
T Consensus 2 ~i~H~F~~~~~~~~-tC~~C~~~l~qg-~~C~~ 32 (49)
T d1kbea_ 2 SVTHRFSTKSWLSQ-VCNVCQKSMIFG-VKCKH 32 (49)
T ss_dssp CCCCCEEEECCSSC-CCSSSCCSSCCE-EEETT
T ss_pred CCccEEeecCcCCC-CchhhchhhhCc-CCcCC
Confidence 45699988777676 599988777887 46764
No 5
>d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]}
Probab=11.59 E-value=38 Score=23.22 Aligned_cols=37 Identities=16% Similarity=-0.021 Sum_probs=22.0
Q ss_pred hhhhhhccCcceeeccchhhhhhHHHHHHHHHHHhcc
Q psy17946 62 RIDTLQNAGARTVVDNELIGRWYWHRLIARLARLLGT 98 (223)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~fI~~LRdFL~G 98 (223)
-++.|+.+|+....-..--|....-.-++.+++||.|
T Consensus 172 ~~~~l~~~G~~v~~~~~~ggH~i~~~~~~~~~~wl~~ 208 (209)
T d3b5ea1 172 LVTLLSRHGAEVDARIIPSGHDIGDPDAAIVRQWLAG 208 (209)
T ss_dssp HHHHHHHTTCEEEEEEESCCSCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCeEEEEECCCCCCCHHHHHHHHHHhCC
Confidence 3567888888632221111333344567888999976
No 6
>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}
Probab=11.11 E-value=29 Score=24.92 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.2
Q ss_pred ccceeeccCCCC
Q psy17946 136 SANYYVNRDGSH 147 (223)
Q Consensus 136 S~NYYYtRDaRR 147 (223)
++.|||.|++.+
T Consensus 91 tAvYYCAR~~~~ 102 (125)
T d1rihh1 91 SAVYYCARESPR 102 (125)
T ss_dssp CEEEEEEEECCC
T ss_pred ceEEEEeeeCCc
Confidence 999999998644
No 7
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=9.94 E-value=33 Score=21.46 Aligned_cols=14 Identities=50% Similarity=0.693 Sum_probs=11.6
Q ss_pred Ccccchhhhhhhhc
Q psy17946 55 ISKTKIERIDTLQN 68 (223)
Q Consensus 55 ~~~~~~~~~~~~~~ 68 (223)
+++.||+||..|.+
T Consensus 2 m~~~~i~RINeLak 15 (42)
T d2hepa1 2 ISNAKIARINELAA 15 (42)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 68899999998854
No 8
>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}
Probab=9.51 E-value=53 Score=23.82 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=11.7
Q ss_pred ccceeeccCCCCCC
Q psy17946 136 SANYYVNRDGSHEV 149 (223)
Q Consensus 136 S~NYYYtRDaRREV 149 (223)
++-|||.|+++...
T Consensus 91 tAvYYCAR~~~~~~ 104 (127)
T d1n0xh1 91 TAVYYCARVGPYSW 104 (127)
T ss_dssp CEEEEEEECCCCCT
T ss_pred ceEEEEEeccCccc
Confidence 89999999877654
No 9
>d1jzua_ b.60.1.1 (A:) Lipocalin q83 {Common quail (Coturnix coturnix) [TaxId: 9091]}
Probab=9.29 E-value=22 Score=23.14 Aligned_cols=12 Identities=50% Similarity=1.151 Sum_probs=7.7
Q ss_pred eec-cchhhhhhH
Q psy17946 74 VVD-NELIGRWYW 85 (223)
Q Consensus 74 ~~~-~~~~~~~~~ 85 (223)
|+| +.+.|+||-
T Consensus 3 ~~D~~k~~G~Wy~ 15 (157)
T d1jzua_ 3 VPDRSEIAGKWYV 15 (157)
T ss_dssp SCCGGGTSEEEEE
T ss_pred cCChhHcCEEEEE
Confidence 344 467788884
No 10
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.71 E-value=51 Score=20.53 Aligned_cols=24 Identities=42% Similarity=0.657 Sum_probs=17.8
Q ss_pred hhhhhccCCcccchhhhh----hhhccC
Q psy17946 47 DLLKTKRGISKTKIERID----TLQNAG 70 (223)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~----~~~~~~ 70 (223)
||=+.-+|.||..+.++. ||.|-|
T Consensus 13 eLN~~Lrgl~keev~~lKqrRRTLKNRG 40 (41)
T d1k1va_ 13 ELNQHLRGLSKEEIIQLKQRRRTLKNRG 40 (41)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhhcCC
Confidence 444556899999998774 777766
Done!