RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17946
         (223 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 25/190 (13%), Positives = 64/190 (33%), Gaps = 29/190 (15%)

Query: 10  LHHFQLFTMVPQHWCSFESSIEYFGLVQCEEKQNWFFDLLKTKRGISKTKIERIDTLQNA 69
           ++    +++V +     ES+I    +   E K       L+ +  + ++ ++  +  +  
Sbjct: 408 VNKLHKYSLVEKQPK--ESTISIPSI-YLELKVK-----LENEYALHRSIVDHYNIPKTF 459

Query: 70  GARTVVDNELIGRWYWHRLIARLARLLGTKRRYKVVVDNPLRFQDYNIVPR----TQPLP 125
            +  ++   L   +Y H     +   L      + +    + F D+  + +         
Sbjct: 460 DSDDLIPPYLDQYFYSH-----IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 126 NLPEGPHHVLS-----ANYYVNRDGSHEVKPPATL-YLANAAQKQIGESHTHINIIQNML 179
           N      + L        Y  + D  +E    A L +L    +  I     + ++++   
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI--CSKYTDLLR--- 569

Query: 180 LICLEQAHES 189
            I L    E+
Sbjct: 570 -IALMAEDEA 578



 Score = 29.8 bits (66), Expect = 0.80
 Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 16/88 (18%)

Query: 24  CSFESSIEYFGLVQCEEKQNWFFDLLKTKRGISKTKIERIDTLQNAGARTVVDNELIGRW 83
           C  +  I +  L  C   +     L K    I      R D   N   R           
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI---------- 227

Query: 84  YWHRLIARLARLLGTKRRYK---VVVDN 108
             H + A L RLL   + Y+   +V+ N
Sbjct: 228 --HSIQAELRRLL-KSKPYENCLLVLLN 252


>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
           synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
           3tdc_A*
          Length = 793

 Score = 30.6 bits (69), Expect = 0.41
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 57  KTKIERIDTLQNAGARTVVDNELIGR 82
              I R+    N+GAR  +  E+   
Sbjct: 154 AEGIPRVYLAANSGARIGLAEEIKHM 179


>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
           cyanogenesis; 2.50A {Arabidopsis thaliana}
          Length = 258

 Score = 27.3 bits (60), Expect = 4.2
 Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 6/32 (18%)

Query: 81  GRWYWHRLIARLARLLGTKRRYKVV-VDNPLR 111
           G W W++L   L         ++V  V+    
Sbjct: 16  GAWIWYKLKPLLES-----AGHRVTAVELAAS 42


>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate
           synthase; menaquinone biosynthesis, sephchc synthase,
           structural genomics; 2.60A {Listeria monocytogenes}
          Length = 578

 Score = 27.5 bits (61), Expect = 4.8
 Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 3/85 (3%)

Query: 74  VVDNELIGRWYWHRLIARLARLLGTKRRYKVVVDNPLRFQDYNIVPRTQPLPNLPEGPHH 133
           + +N      Y     +R   +     R  V ++ PL      +VP  +P P    G  H
Sbjct: 141 LPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL---REPLVPILEPSPFTATGKKH 197

Query: 134 VLSANYYVNRDGSHEVKPPATLYLA 158
                YY +                
Sbjct: 198 HHVHIYYTHEVLDDSSIQKMVTECT 222


>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate
           esterase family 2, hydrolase; 2.00A {Cellvibrio
           japonicus}
          Length = 366

 Score = 27.1 bits (59), Expect = 5.8
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 93  ARLLGTKRRYKVVVDNPLRFQDYNIVPRTQPLPNLPEGPHHV 134
            +    +  ++++VD+              P+ +L  G H V
Sbjct: 68  LKFDDDQNIFRLIVDDKAPVVINKPGKVDYPVESLAPGKHRV 109


>2rqx_A PMRD, polymyxin B resistance protein; signaling protein; NMR
           {Klebsiella pneumoniae}
          Length = 89

 Score = 25.5 bits (55), Expect = 7.4
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 137 ANYYVNRDGSHEVKP-PATLYLAN--AAQKQIGESHTH 171
           A Y +N + +  +K   AT Y +       ++   H H
Sbjct: 51  ARYCLNNNPTQTLKIRNATHYSSERWTNADKLEHHHHH 88


>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP;
           2.9A {Pyrococcus abyssi GE5}
          Length = 389

 Score = 26.4 bits (58), Expect = 7.8
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 39  EEKQNWFFDLLKTKRGISKTKIERIDTLQNAGARTVVDNELIGRWYWHRLIARLARLLGT 98
           +E  +  +  +  K G+++ +IE ++              +I   +      R     G 
Sbjct: 9   KEVVSSVYKEILVKLGLTEDRIETLEM----------KGGIIEDEFDGIRYVRFKDSAGK 58

Query: 99  KRRYKVVVDNPLRFQDYNIVPRTQPLPNLPEGPHHVLSANYYV 141
            RR  VV+D       +  + R   L              +YV
Sbjct: 59  LRRGTVVIDEEYVIPGFPHIKRIINL--RSGIRRIFKRGEFYV 99


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0740    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,486,210
Number of extensions: 200826
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 19
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)