RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17946
         (223 letters)



>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 307

 Score = 28.8 bits (64), Expect = 0.54
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 10/91 (10%)

Query: 77  NELIGRWYWHRLIARLARLLGTKRRYKVVVDNPL------RFQDYNI----VPRTQPLPN 126
           NEL G +     +   A +       K  + NP       R+ D ++             
Sbjct: 19  NELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCTRYIDCDLNRVFDLENLSKEM 78

Query: 127 LPEGPHHVLSANYYVNRDGSHEVKPPATLYL 157
             + P+ V  A    +  G         +  
Sbjct: 79  SEDLPYEVRRAQEINHLFGPKNSDDAYDVVF 109


>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537
           {Pyrococcus furiosus [TaxId: 2261]}
          Length = 447

 Score = 28.7 bits (64), Expect = 0.55
 Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 11/126 (8%)

Query: 57  KTKIERIDTLQNAGARTVVDNELIGR-WYWHRLIARLARL-LGTKRRYKVVVDNPLRFQD 114
             ++  +D ++N   R   + ++         LI    +   GT    K+     ++   
Sbjct: 324 DIEVVTMDVIKNHPVRAFANMKMYFNLGGAIYLIPHKLKQAKGTPIPIKLAKKRIIKNGK 383

Query: 115 YNIVPRTQPLPNLPEGPHHVLSANYYVNRDGSHEVKPPATLYLANAAQKQIGESHTHINI 174
                  Q +         +L+   Y +      ++ PA ++ A+     I        I
Sbjct: 384 VEK----QSITRQDVLDIFILTRLNYGSISAD--MRLPAPVHYAHKFANAIRNE---WKI 434

Query: 175 IQNMLL 180
            +  L 
Sbjct: 435 KEEFLA 440


>d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 145

 Score = 24.5 bits (53), Expect = 8.8
 Identities = 4/53 (7%), Positives = 16/53 (30%)

Query: 147 HEVKPPATLYLANAAQKQIGESHTHINIIQNMLLICLEQAHESHVMTRVGREV 199
            E +      L      +  +            +    + + +H + ++G ++
Sbjct: 86  AESRAAMRNALKRIQDGEYAKMFITEGAANYPSMTAYRRNNAAHPIEQIGEKL 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 856,548
Number of extensions: 38355
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 8
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)