BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17949
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 54/64 (84%)
Query: 27 LTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
L P + QKDTT+TK+FVGGLPYHTTD SLR++F FGDIEEAVVITDRQTGKSRGY
Sbjct: 18 LAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY 77
Query: 87 GFVS 90
GFV+
Sbjct: 78 GFVT 81
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 54/61 (88%)
Query: 30 PSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
PS + QKDTT+TK+FVGGLPYHTTD SLR++F FGDIEEAVVITDRQTGKSRGYGFV
Sbjct: 19 PSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 78
Query: 90 S 90
+
Sbjct: 79 T 79
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/54 (87%), Positives = 52/54 (96%)
Query: 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/54 (85%), Positives = 52/54 (96%)
Query: 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
QKDTT+TK+FVGGLPYHTTD SLR++F VFGDI+EAVVITDRQTGKSRGYGFV+
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVT 58
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/57 (80%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFG+IEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVT 58
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/57 (80%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFG+IEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVT 58
>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2
Length = 214
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/54 (83%), Positives = 51/54 (94%)
Query: 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
QKDTT+TK+FVGGLPYHTTD SLR++F VFGDI+EAVVITDRQT KSRGYGFV+
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVT 58
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
+KLFVGGL + T D SL++ F+ FG++ EA VI DR+TG+SRG+GFVS S
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 39/48 (81%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
TKLF+GGL + T D SLR+ F+ FGD+ +A VI DR+TG+SRG+GFV+
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVN 82
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 84
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 84
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 84
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 37/47 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+ FVGGL + T D+SL + FS FGDI ++ +I DR+TG+SRG+GFV+
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVT 53
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 16 GADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVI 75
G G GS + S Q+D KLFVGGL + TT+K LR+HF +G+IE V
Sbjct: 30 GDAGAAGSTNGSSDNQSAASGQRDDD-RKLFVGGLSWETTEKELRDHFGKYGEIESINVK 88
Query: 76 TDRQTGKSRGYGFV 89
TD QTG+SRG+ F+
Sbjct: 89 TDPQTGRSRGFAFI 102
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL +D+ ++ +F FG+I E + D+Q + +G+ F++
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFIT 183
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 28 TTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYG 87
++ G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+G
Sbjct: 12 SSDDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFG 71
Query: 88 FVSPS 92
FV+ S
Sbjct: 72 FVTYS 76
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVT 165
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 39/49 (79%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL Y TTD+SL++HF +G+I + VV+ D +T +SRG+GF++ S
Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYS 66
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
T KLFVGG+ + LR++F +G + A ++ D++T K RG+ FV
Sbjct: 106 TVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFV 154
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL ++T +++L +HFS FG I E VV+ DR+T +SRG+GF++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFIT 53
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL ++T +++L +HFS FG I E VV+ DR+T +SRG+GF++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFIT 53
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 28 TTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYG 87
++ G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+G
Sbjct: 12 SSDDQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFG 71
Query: 88 FVSPS 92
FV+ S
Sbjct: 72 FVTYS 76
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++ +G IE V+ DRQ+GK RG+ FV+
Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVT 165
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL ++T +++L +HFS FG I E VV+ DR+T +SRG+GF++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFIT 53
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+ FVGGL + T D+SL+ FS +GD+ ++ +ITDR+TG+SRG+GFV+
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVT 53
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL Y TTD++L+ HF +G+I + VV+ D +T +SRG+GF++ S
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYS 80
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+S T KLFVG L ++S+R++F FG+I + ++ D++TGK RG+ FV
Sbjct: 113 DSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFV 168
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
D+ KLFVGG+ + T + LREHF+ +G++ +A+V+ D+ TG+ RG+GFV
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFV 52
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGLP TD+ R++F V+G + + ++ D+ T + RG+GFVS
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVS 157
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 39/49 (79%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
+ FVGGL + T+++SL F+ +G+I ++ VITDR+TG+SRG+GFV+ S
Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFS 57
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL Y TTD L+ HF +G+I + VV+ D +T +SRG+GF++ S
Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYS 73
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+S T KLFVGGL ++ LRE+F FG I +++D+ TGK RG+ F+
Sbjct: 106 DSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+ +KLF+GG+ Y + SLRE F+ +G++ + VI DR+TG+SRG+GFV+
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 52
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 52
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLREHF +G + + VV+ D + +SRG+GFV+
Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVT 61
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LRE+F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T KLFVGG+ T + LRE+F +G IE +ITD+Q+GK RG+GFV+
Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVT 147
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 39/57 (68%)
Query: 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
+++ + KLF+GGL + TT++SLR + +G + + VV+ D + +SRG+GFV+ S
Sbjct: 2 EREKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFS 58
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 37/47 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + TT++SL + FS +G + E VV+ DR++ +SRG+GFV+
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVT 53
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 38/49 (77%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
+ FVGGL + T +++L + F+ FG + ++ VITDR+TG+SRG+GFV+ S
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFS 57
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+ FVGGL + T D+ L+ FS FGD+ ++ +I DR++G+SRG+GFV+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVT 53
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVT 52
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila
melanogaster GN=Rbp6 PE=2 SV=3
Length = 369
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 37/47 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+F+GGL + T+ +SLR++F +GDI EA+V+ D T +SRG+GFV+
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVT 76
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGGL TT + ++ +F FG IE+A+++ D+QT + RG+GFV+
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVT 165
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+ +K+FVGG+ Y T + LRE FS +G++ +A +I DR+TG+SRG+ FV+
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVT 81
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2
PE=1 SV=1
Length = 346
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
N Q D K+F+GGL + T+ SLR++FS FG+I E +V+ D T +SRG+GFV+
Sbjct: 14 NDSQHDPG--KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 35 SQQKDTTWTK-LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+Q K T TK +FVGGL +T + ++++F FG +E+A+++ D+ T + RG+GFV+
Sbjct: 101 AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVT 157
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + T +++L + FS +G I E VV+ DR+T +SRG+GFV
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFV 52
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + T +++L + FS +G I E VV+ DR+T +SRG+GFV
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFV 52
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + T +++L + FS +G I E VV+ DR+T +SRG+GFV
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFV 52
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,909,408
Number of Sequences: 539616
Number of extensions: 1369297
Number of successful extensions: 4833
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 3543
Number of HSP's gapped (non-prelim): 1295
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)