Query psy17949
Match_columns 96
No_of_seqs 141 out of 1229
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:26:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 3.6E-19 1.2E-23 104.2 7.4 56 39-94 16-71 (99)
2 2khc_A Testis-specific RNP-typ 99.8 5.1E-18 1.7E-22 101.4 11.4 59 36-94 34-92 (118)
3 2m2b_A RNA-binding protein 10; 99.8 8.7E-19 3E-23 106.9 6.7 57 37-93 18-76 (131)
4 3s8s_A Histone-lysine N-methyl 99.8 2.2E-18 7.7E-23 102.6 8.0 55 40-94 4-58 (110)
5 3s7r_A Heterogeneous nuclear r 99.8 3E-18 1E-22 97.4 8.1 58 37-94 6-63 (87)
6 2cqg_A TDP-43, TAR DNA-binding 99.8 5E-18 1.7E-22 99.3 8.9 59 36-94 9-67 (103)
7 2rs2_A Musashi-1, RNA-binding 99.8 1.5E-18 5E-23 103.0 6.7 64 31-94 14-77 (109)
8 2dgs_A DAZ-associated protein 99.8 7.5E-18 2.6E-22 97.9 8.7 58 37-94 5-62 (99)
9 2cpz_A CUG triplet repeat RNA- 99.7 9.6E-18 3.3E-22 99.9 8.9 59 36-94 19-77 (115)
10 2dh8_A DAZ-associated protein 99.7 8.1E-18 2.8E-22 98.7 8.3 59 36-94 10-68 (105)
11 1s79_A Lupus LA protein; RRM, 99.7 6.9E-18 2.3E-22 99.5 7.8 56 37-93 6-61 (103)
12 2cqd_A RNA-binding region cont 99.7 1.6E-17 5.6E-22 99.0 9.5 59 36-94 11-69 (116)
13 1x5u_A Splicing factor 3B subu 99.7 1.1E-17 3.8E-22 98.0 8.3 58 37-94 10-67 (105)
14 2dgo_A Cytotoxic granule-assoc 99.7 1.6E-17 5.4E-22 98.8 9.1 60 35-94 8-67 (115)
15 1x4b_A Heterogeneous nuclear r 99.7 6.3E-18 2.2E-22 100.8 7.3 56 39-94 24-79 (116)
16 2cq4_A RNA binding motif prote 99.7 7.4E-18 2.5E-22 100.2 7.5 57 38-94 21-77 (114)
17 2cqc_A Arginine/serine-rich sp 99.7 1.5E-17 5.2E-22 95.7 8.5 59 36-94 9-67 (95)
18 2lxi_A RNA-binding protein 10; 99.7 8.3E-19 2.9E-23 101.1 3.2 52 42-93 1-53 (91)
19 1x4h_A RNA-binding protein 28; 99.7 1.4E-17 4.7E-22 98.4 8.4 58 37-94 10-67 (111)
20 2dnh_A Bruno-like 5, RNA bindi 99.7 2.2E-17 7.6E-22 96.7 9.3 57 37-94 10-66 (105)
21 2dgp_A Bruno-like 4, RNA bindi 99.7 5.7E-18 2E-22 99.4 6.7 57 37-93 8-64 (106)
22 2cq0_A Eukaryotic translation 99.7 1.7E-17 5.7E-22 97.0 8.5 58 37-94 10-67 (103)
23 2lkz_A RNA-binding protein 5; 99.7 3.9E-18 1.3E-22 99.3 5.5 55 40-94 7-63 (95)
24 2la6_A RNA-binding protein FUS 99.7 2E-17 7E-22 96.1 8.5 59 36-94 7-73 (99)
25 2e5h_A Zinc finger CCHC-type a 99.7 2.3E-17 7.8E-22 94.9 8.5 58 37-94 11-68 (94)
26 1x4e_A RNA binding motif, sing 99.7 1.4E-17 4.9E-22 94.2 7.4 55 40-94 3-57 (85)
27 2cph_A RNA binding motif prote 99.7 2E-17 6.9E-22 97.1 8.1 59 36-94 9-68 (107)
28 2dnm_A SRP46 splicing factor; 99.7 1.9E-17 6.6E-22 96.8 7.9 58 37-94 8-65 (103)
29 2do4_A Squamous cell carcinoma 99.7 4.1E-17 1.4E-21 94.9 9.1 56 37-93 12-67 (100)
30 1wg5_A Heterogeneous nuclear r 99.7 2.5E-17 8.4E-22 96.8 8.2 57 37-94 10-67 (104)
31 1p27_B RNA-binding protein 8A; 99.7 2.3E-17 7.8E-22 96.8 7.9 57 38-94 19-75 (106)
32 1u6f_A Tcubp1, RNA-binding pro 99.7 1E-16 3.4E-21 98.2 11.0 60 35-94 35-94 (139)
33 2dng_A Eukaryotic translation 99.7 5.2E-17 1.8E-21 95.0 9.2 57 37-94 10-66 (103)
34 2jrs_A RNA-binding protein 39; 99.7 3.3E-17 1.1E-21 97.0 8.4 59 36-94 20-78 (108)
35 2div_A TRNA selenocysteine ass 99.7 2.3E-17 7.7E-22 95.8 7.4 56 39-94 6-62 (99)
36 3n9u_C Cleavage and polyadenyl 99.7 1.6E-17 5.5E-22 104.4 7.1 55 40-94 53-109 (156)
37 1wi8_A EIF-4B, eukaryotic tran 99.7 4E-17 1.4E-21 95.6 8.2 56 38-94 11-67 (104)
38 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.9E-17 1E-21 93.1 7.3 55 40-94 4-58 (87)
39 3ns6_A Eukaryotic translation 99.7 5.3E-18 1.8E-22 99.1 4.1 54 40-93 4-63 (100)
40 2cpy_A RNA-binding protein 12; 99.7 2.3E-17 8E-22 98.4 6.9 56 38-94 11-67 (114)
41 2dnz_A Probable RNA-binding pr 99.7 5.1E-17 1.8E-21 93.5 8.2 55 40-94 3-57 (95)
42 1whw_A Hypothetical protein ri 99.7 4E-17 1.4E-21 94.7 7.7 56 39-94 5-60 (99)
43 2kxn_B Transformer-2 protein h 99.7 3.5E-17 1.2E-21 99.8 7.7 58 37-94 41-98 (129)
44 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1E-16 3.6E-21 97.8 9.8 58 36-93 57-114 (140)
45 1x5o_A RNA binding motif, sing 99.7 1.4E-16 4.8E-21 94.6 10.1 57 37-94 20-76 (114)
46 3p5t_L Cleavage and polyadenyl 99.7 8.4E-18 2.9E-22 96.4 4.5 52 43-94 2-55 (90)
47 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3E-17 1E-21 92.7 6.7 56 39-94 4-59 (85)
48 2ywk_A Putative RNA-binding pr 99.7 5E-17 1.7E-21 93.6 7.6 57 37-94 11-67 (95)
49 2xs2_A Deleted in azoospermia- 99.7 3.1E-17 1.1E-21 95.7 6.7 56 38-94 5-60 (102)
50 3md1_A Nuclear and cytoplasmic 99.7 5.3E-17 1.8E-21 91.3 7.4 52 43-94 2-53 (83)
51 1oo0_B CG8781-PA, drosophila Y 99.7 4.2E-17 1.4E-21 96.3 7.3 58 37-94 21-78 (110)
52 2d9p_A Polyadenylate-binding p 99.7 9.6E-17 3.3E-21 93.8 8.7 57 36-94 9-65 (103)
53 1x5s_A Cold-inducible RNA-bind 99.7 4.6E-17 1.6E-21 94.9 7.2 56 38-93 8-63 (102)
54 2dhg_A TRNA selenocysteine ass 99.7 6.4E-17 2.2E-21 94.6 7.8 56 38-94 5-61 (104)
55 1wez_A HnRNP H', FTP-3, hetero 99.7 8.7E-17 3E-21 94.4 8.2 55 38-94 11-65 (102)
56 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-17 5E-22 92.4 4.6 52 43-94 1-52 (77)
57 3ucg_A Polyadenylate-binding p 99.7 7.3E-17 2.5E-21 91.8 7.6 54 41-94 5-58 (89)
58 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.3E-17 1.1E-21 95.5 6.0 56 39-94 9-64 (102)
59 1wel_A RNA-binding protein 12; 99.7 4.8E-17 1.6E-21 98.2 6.9 58 37-94 20-77 (124)
60 2x1f_A MRNA 3'-END-processing 99.7 6E-17 2E-21 93.7 6.9 53 42-94 2-54 (96)
61 2cpe_A RNA-binding protein EWS 99.7 7.8E-17 2.7E-21 95.6 7.6 58 37-94 10-75 (113)
62 4f02_A Polyadenylate-binding p 99.7 5.5E-17 1.9E-21 105.6 7.5 55 40-94 13-67 (213)
63 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.2E-17 7.4E-22 96.4 4.8 58 36-94 13-71 (100)
64 2mss_A Protein (musashi1); RNA 99.7 2.5E-17 8.6E-22 91.2 4.8 51 44-94 1-51 (75)
65 2cqp_A RNA-binding protein 12; 99.7 5.6E-17 1.9E-21 93.9 6.0 57 38-94 11-67 (98)
66 1x5t_A Splicing factor 3B subu 99.7 5.7E-17 1.9E-21 93.5 5.6 55 40-94 3-58 (96)
67 1iqt_A AUF1, heterogeneous nuc 99.7 2.3E-17 7.8E-22 91.3 3.8 51 44-94 1-51 (75)
68 2j8a_A Histone-lysine N-methyl 99.7 6.4E-17 2.2E-21 98.9 6.0 52 42-93 2-57 (136)
69 2jwn_A Embryonic polyadenylate 99.7 2.1E-17 7.1E-22 99.5 3.8 55 40-94 34-88 (124)
70 3d2w_A TAR DNA-binding protein 99.7 9E-17 3.1E-21 92.2 6.2 53 37-94 6-58 (89)
71 2do0_A HnRNP M, heterogeneous 99.7 3.8E-16 1.3E-20 92.6 9.1 57 37-94 10-66 (114)
72 3ex7_B RNA-binding protein 8A; 99.7 1.2E-16 4.3E-21 96.3 7.1 58 37-94 17-74 (126)
73 2fy1_A RNA-binding motif prote 99.7 1.4E-16 4.8E-21 95.4 7.2 55 39-94 4-58 (116)
74 2db1_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 95.8 6.8 57 37-94 12-71 (118)
75 3ulh_A THO complex subunit 4; 99.7 2.6E-16 8.8E-21 92.4 7.7 56 37-93 24-79 (107)
76 2cpf_A RNA binding motif prote 99.7 9.9E-17 3.4E-21 92.9 5.8 55 40-94 3-60 (98)
77 1l3k_A Heterogeneous nuclear r 99.7 1.9E-16 6.4E-21 100.8 7.6 58 37-94 8-65 (196)
78 2kn4_A Immunoglobulin G-bindin 99.7 2.4E-16 8.2E-21 98.2 7.9 57 38-94 66-122 (158)
79 1p1t_A Cleavage stimulation fa 99.7 3.9E-17 1.3E-21 95.4 4.0 56 39-94 5-60 (104)
80 2kt5_A RNA and export factor-b 99.7 1.1E-15 3.7E-20 92.0 10.5 56 38-94 31-86 (124)
81 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.1E-16 1E-20 97.8 8.3 58 37-94 34-91 (156)
82 2ki2_A SS-DNA binding protein 99.7 2.8E-17 9.7E-22 93.9 3.3 52 43-94 2-53 (90)
83 3q2s_C Cleavage and polyadenyl 99.7 1.7E-16 5.7E-21 105.1 7.3 54 41-94 67-122 (229)
84 2dnl_A Cytoplasmic polyadenyla 99.7 8.4E-17 2.9E-21 95.9 5.3 54 40-94 6-62 (114)
85 2dgw_A Probable RNA-binding pr 99.7 3.8E-16 1.3E-20 89.4 7.8 56 37-94 5-60 (91)
86 2hgm_A HNRPF protein, heteroge 99.7 2.6E-16 9E-21 95.9 7.5 55 38-94 38-94 (126)
87 2cq3_A RNA-binding protein 9; 99.7 9E-16 3.1E-20 89.6 9.5 56 37-94 10-65 (103)
88 2dnn_A RNA-binding protein 12; 99.7 2E-16 6.7E-21 94.2 6.6 54 38-93 12-65 (109)
89 2dis_A Unnamed protein product 99.7 1.9E-16 6.3E-21 93.3 6.4 56 39-94 5-62 (109)
90 2ek1_A RNA-binding protein 12; 99.7 6.3E-17 2.1E-21 93.2 4.2 54 41-94 14-67 (95)
91 1sjq_A Polypyrimidine tract-bi 99.7 2.3E-16 8E-21 93.4 6.5 49 39-93 13-61 (105)
92 2hgl_A HNRPF protein, heteroge 99.7 1.7E-16 5.7E-21 97.8 6.1 57 37-94 39-98 (136)
93 4f25_A Polyadenylate-binding p 99.7 2.4E-16 8.1E-21 94.1 6.6 51 42-94 5-55 (115)
94 4a8x_A RNA-binding protein wit 99.7 1.6E-16 5.3E-21 90.1 5.5 55 40-94 2-57 (88)
95 2cq1_A PTB-like protein L; RRM 99.7 7.4E-16 2.5E-20 90.6 8.5 52 37-94 10-61 (101)
96 2cqi_A Nucleolysin TIAR; RNA r 99.7 7.9E-16 2.7E-20 89.8 8.6 56 37-94 10-65 (103)
97 2err_A Ataxin-2-binding protei 99.6 3.4E-16 1.2E-20 92.7 6.7 58 35-94 22-79 (109)
98 1rk8_A CG8781-PA, CG8781-PA pr 99.6 5.3E-16 1.8E-20 97.7 8.0 57 38-94 68-124 (165)
99 2lmi_A GRSF-1, G-rich sequence 99.6 1.5E-16 5E-21 93.9 5.0 57 37-94 6-65 (107)
100 2dgv_A HnRNP M, heterogeneous 99.6 7.3E-16 2.5E-20 88.2 7.8 54 39-94 5-58 (92)
101 2cjk_A Nuclear polyadenylated 99.6 2.8E-16 9.7E-21 97.8 6.5 54 41-94 2-55 (167)
102 2krb_A Eukaryotic translation 99.6 3.3E-16 1.1E-20 88.0 5.5 51 42-94 1-57 (81)
103 1wex_A Hypothetical protein (r 99.6 1.6E-15 5.6E-20 89.5 8.6 49 39-93 12-60 (104)
104 2lea_A Serine/arginine-rich sp 99.6 1.8E-16 6.2E-21 97.2 4.6 57 37-93 42-98 (135)
105 2nlw_A Eukaryotic translation 99.6 7.2E-16 2.5E-20 90.6 6.9 55 38-94 11-71 (105)
106 2dha_A FLJ20171 protein; RRM d 99.6 3E-16 1E-20 95.2 5.3 55 39-94 20-78 (123)
107 1x4a_A Splicing factor, argini 99.6 3.6E-15 1.2E-19 87.9 9.7 54 37-93 17-70 (109)
108 2ad9_A Polypyrimidine tract-bi 99.6 1.4E-15 4.9E-20 91.8 7.3 50 38-93 27-76 (119)
109 1x4d_A Matrin 3; structural ge 99.6 1.5E-15 5.1E-20 89.5 6.9 51 38-94 11-62 (102)
110 2hgn_A Heterogeneous nuclear r 99.6 3.6E-16 1.2E-20 96.7 3.9 55 38-94 42-96 (139)
111 1x4f_A Matrin 3; structural ge 99.6 3.3E-15 1.1E-19 89.4 7.9 51 37-93 20-71 (112)
112 3nmr_A Cugbp ELAV-like family 99.6 1.7E-15 6E-20 94.6 6.7 54 41-94 2-57 (175)
113 1fj7_A Nucleolin RBD1, protein 99.6 1.3E-16 4.4E-21 92.9 1.5 55 39-94 14-68 (101)
114 1wf0_A TDP-43, TAR DNA-binding 99.6 8.8E-16 3E-20 87.4 4.9 50 40-94 3-52 (88)
115 1fxl_A Paraneoplastic encephal 99.6 3.1E-15 1.1E-19 92.7 7.5 53 42-94 2-54 (167)
116 2dgx_A KIAA0430 protein; RRM d 99.6 2.6E-15 9E-20 86.8 6.6 53 39-94 6-62 (96)
117 2cpi_A CCR4-NOT transcription 99.6 2.6E-15 8.9E-20 89.0 6.6 57 38-94 11-73 (111)
118 2fc9_A NCL protein; structure 99.6 4.4E-15 1.5E-19 86.3 7.2 53 38-94 11-63 (101)
119 3r27_A HnRNP L, heterogeneous 99.6 7E-15 2.4E-19 86.3 7.6 50 38-93 17-66 (100)
120 1b7f_A Protein (SXL-lethal pro 99.6 2.9E-15 9.8E-20 93.1 6.2 54 41-94 2-55 (168)
121 2lcw_A RNA-binding protein FUS 99.4 1.4E-16 4.6E-21 95.1 0.0 57 38-94 3-67 (116)
122 2a3j_A U1 small nuclear ribonu 99.6 6E-15 2.1E-19 89.9 6.9 52 39-93 26-81 (127)
123 1x4c_A Splicing factor, argini 99.6 1.8E-14 6.2E-19 84.9 8.6 49 39-94 12-60 (108)
124 2fc8_A NCL protein; structure 99.6 1.1E-14 3.7E-19 84.7 7.5 55 37-94 10-64 (102)
125 2qfj_A FBP-interacting repress 99.6 7.4E-15 2.5E-19 94.6 7.2 55 40-94 26-80 (216)
126 2f3j_A RNA and export factor b 99.6 6.4E-15 2.2E-19 94.1 6.8 54 40-94 86-139 (177)
127 1l3k_A Heterogeneous nuclear r 99.6 1.2E-14 4.3E-19 92.3 8.1 55 40-94 102-156 (196)
128 2cpx_A Hypothetical protein FL 99.6 1.5E-15 5E-20 90.2 3.5 57 38-94 21-77 (115)
129 3md3_A Nuclear and cytoplasmic 99.6 2.3E-14 7.9E-19 88.6 9.0 57 38-94 83-139 (166)
130 2cpj_A Non-POU domain-containi 99.6 2E-14 6.8E-19 83.3 7.9 52 37-94 10-61 (99)
131 2ytc_A PRE-mRNA-splicing facto 99.6 2.1E-14 7.3E-19 80.9 7.8 52 37-94 7-58 (85)
132 3pgw_S U1-70K; protein-RNA com 99.6 1.1E-14 3.6E-19 104.1 7.7 55 40-94 100-154 (437)
133 2g4b_A Splicing factor U2AF 65 99.6 2.1E-14 7.3E-19 89.6 8.2 55 40-94 92-146 (172)
134 1why_A Hypothetical protein ri 99.5 3.2E-14 1.1E-18 82.1 8.1 50 39-94 14-63 (97)
135 3lqv_A PRE-mRNA branch site pr 99.5 2.3E-14 8E-19 85.0 7.5 53 39-94 5-57 (115)
136 2yh0_A Splicing factor U2AF 65 99.5 6.1E-14 2.1E-18 89.2 9.8 56 39-94 111-166 (198)
137 2jvo_A Nucleolar protein 3; nu 99.5 1.6E-14 5.5E-19 85.4 6.5 52 35-94 24-75 (108)
138 1wf1_A RNA-binding protein RAL 99.5 6.6E-14 2.2E-18 82.6 9.1 49 38-94 23-72 (110)
139 2e5j_A Methenyltetrahydrofolat 99.5 3.3E-14 1.1E-18 82.2 7.4 52 38-94 15-66 (97)
140 2voo_A Lupus LA protein; RNA-b 99.5 2.5E-14 8.4E-19 92.4 7.4 53 41-94 108-160 (193)
141 2la4_A Nuclear and cytoplasmic 99.5 2.8E-14 9.5E-19 82.9 6.8 50 39-94 24-73 (101)
142 2i2y_A Fusion protein consists 99.5 2.6E-14 9E-19 88.5 6.9 53 37-94 68-120 (150)
143 2qfj_A FBP-interacting repress 99.5 3.7E-14 1.3E-18 91.3 7.9 55 40-94 123-177 (216)
144 1b7f_A Protein (SXL-lethal pro 99.5 6.8E-14 2.3E-18 86.9 8.7 56 39-94 86-141 (168)
145 2xnq_A Nuclear polyadenylated 99.5 4.1E-14 1.4E-18 82.1 7.1 53 34-94 14-67 (97)
146 2wbr_A GW182, gawky, LD47780P; 99.5 1.6E-14 5.5E-19 82.9 5.2 47 41-93 6-52 (89)
147 2cjk_A Nuclear polyadenylated 99.5 1E-14 3.6E-19 90.6 4.7 54 41-94 86-139 (167)
148 1fxl_A Paraneoplastic encephal 99.5 5.7E-14 2E-18 86.9 7.8 55 40-94 86-140 (167)
149 2dnq_A RNA-binding protein 4B; 99.5 6.4E-14 2.2E-18 79.9 7.2 48 39-94 5-52 (90)
150 3md3_A Nuclear and cytoplasmic 99.5 2.5E-14 8.4E-19 88.5 5.8 51 43-94 1-51 (166)
151 2hvz_A Splicing factor, argini 99.5 2.2E-14 7.6E-19 83.3 5.2 47 43-94 1-47 (101)
152 1nu4_A U1A RNA binding domain; 99.5 1E-14 3.4E-19 84.1 3.6 53 39-94 5-61 (97)
153 2e5g_A U6 snRNA-specific termi 99.5 1.2E-13 4.1E-18 79.4 8.1 50 40-94 6-55 (94)
154 1x4g_A Nucleolysin TIAR; struc 99.5 4.8E-14 1.6E-18 83.1 6.4 51 38-94 21-71 (109)
155 3nmr_A Cugbp ELAV-like family 99.5 5.9E-14 2E-18 87.5 7.2 55 39-94 92-146 (175)
156 1fjc_A Nucleolin RBD2, protein 99.5 1.5E-14 5.3E-19 83.2 4.0 53 37-94 11-63 (96)
157 2jvr_A Nucleolar protein 3; RN 99.5 3.6E-14 1.2E-18 84.6 4.6 51 40-94 26-77 (111)
158 2dgt_A RNA-binding protein 30; 99.5 1.4E-13 4.7E-18 78.8 6.9 50 36-93 4-53 (92)
159 1whx_A Hypothetical protein ri 99.5 3.6E-14 1.2E-18 84.2 4.5 49 39-93 7-55 (111)
160 2cpd_A Apobec-1 stimulating pr 99.5 3E-13 1E-17 78.3 8.4 51 36-94 9-61 (99)
161 2e44_A Insulin-like growth fac 99.5 8.3E-14 2.9E-18 80.1 5.7 53 38-94 11-64 (96)
162 3egn_A RNA-binding protein 40; 99.5 9.9E-15 3.4E-19 89.8 1.6 56 39-94 42-102 (143)
163 2kvi_A Nuclear polyadenylated 99.5 1.4E-13 4.9E-18 79.4 6.2 49 38-94 6-55 (96)
164 2cq2_A Hypothetical protein LO 99.5 5.9E-14 2E-18 84.1 4.6 48 40-93 23-72 (114)
165 3beg_B Splicing factor, argini 99.5 6.5E-14 2.2E-18 83.5 4.5 48 40-94 14-61 (115)
166 2dgu_A Heterogeneous nuclear r 99.4 2.3E-13 7.8E-18 79.4 6.4 47 40-94 9-55 (103)
167 1x5p_A Negative elongation fac 99.4 5.8E-13 2E-17 76.9 8.1 50 37-94 10-59 (97)
168 2hzc_A Splicing factor U2AF 65 99.4 2E-13 6.8E-18 77.1 5.7 49 40-94 4-63 (87)
169 2dnp_A RNA-binding protein 14; 99.4 2.9E-13 9.9E-18 77.1 5.9 50 37-94 4-53 (90)
170 3smz_A Protein raver-1, ribonu 99.4 4.8E-13 1.6E-17 89.7 7.9 54 41-94 94-147 (284)
171 3pgw_A U1-A; protein-RNA compl 99.4 4.2E-13 1.4E-17 89.9 7.4 54 38-94 5-62 (282)
172 3sde_A Paraspeckle component 1 99.4 4.4E-13 1.5E-17 89.5 7.2 53 41-94 95-147 (261)
173 1sjr_A Polypyrimidine tract-bi 99.4 5.3E-13 1.8E-17 84.4 6.7 51 39-93 43-93 (164)
174 4f02_A Polyadenylate-binding p 99.4 5.2E-13 1.8E-17 86.7 6.7 52 41-94 102-153 (213)
175 1wg1_A KIAA1579 protein, homol 99.4 3.9E-13 1.3E-17 76.4 4.9 47 41-94 4-50 (88)
176 2cqh_A IGF-II mRNA-binding pro 99.4 2E-13 6.7E-18 78.2 3.6 49 39-94 5-54 (93)
177 3tyt_A Heterogeneous nuclear r 99.4 8.7E-13 3E-17 85.8 6.6 49 41-94 3-52 (205)
178 2e5i_A Heterogeneous nuclear r 99.4 8.5E-12 2.9E-16 75.7 9.8 48 40-93 23-71 (124)
179 3zzy_A Polypyrimidine tract-bi 99.3 2.8E-12 9.6E-17 78.4 7.1 51 38-93 24-75 (130)
180 2adc_A Polypyrimidine tract-bi 99.3 1.4E-12 4.7E-17 85.6 6.1 52 38-94 30-82 (229)
181 2ghp_A U4/U6 snRNA-associated 99.3 1.2E-12 4.1E-17 88.0 6.0 57 38-94 206-264 (292)
182 3smz_A Protein raver-1, ribonu 99.3 2.8E-12 9.5E-17 86.0 7.3 56 38-94 180-236 (284)
183 3tyt_A Heterogeneous nuclear r 99.3 9.2E-13 3.1E-17 85.6 4.7 53 40-94 121-175 (205)
184 2ghp_A U4/U6 snRNA-associated 99.3 1.9E-12 6.6E-17 87.0 6.4 56 37-94 36-91 (292)
185 1fje_B Nucleolin RBD12, protei 99.3 1.1E-13 3.8E-18 86.7 -0.1 57 37-94 8-64 (175)
186 2bz2_A Negative elongation fac 99.3 3.1E-12 1.1E-16 77.0 6.0 49 38-94 35-83 (121)
187 3pgw_A U1-A; protein-RNA compl 99.3 2E-11 6.9E-16 81.7 10.3 51 39-94 204-254 (282)
188 3sde_A Paraspeckle component 1 99.3 6.6E-12 2.2E-16 83.8 7.7 51 37-93 17-67 (261)
189 1fje_B Nucleolin RBD12, protei 99.3 5.3E-12 1.8E-16 79.0 6.8 52 38-94 95-146 (175)
190 1qm9_A Polypyrimidine tract-bi 99.3 2.6E-12 9E-17 82.0 4.3 49 41-94 2-51 (198)
191 2pe8_A Splicing factor 45; RRM 99.3 1.9E-11 6.5E-16 72.0 7.3 54 40-93 6-65 (105)
192 3u1l_A PRE-mRNA-splicing facto 99.3 6.3E-12 2.2E-16 83.8 5.5 49 39-93 131-188 (240)
193 3tht_A Alkylated DNA repair pr 99.2 1.5E-11 5.2E-16 85.7 5.3 50 38-93 14-65 (345)
194 2g4b_A Splicing factor U2AF 65 99.2 5.5E-11 1.9E-15 73.9 5.9 47 41-93 3-60 (172)
195 2yh0_A Splicing factor U2AF 65 99.2 4.7E-11 1.6E-15 75.7 5.6 48 41-94 3-61 (198)
196 1qm9_A Polypyrimidine tract-bi 99.2 1.7E-10 5.8E-15 73.5 8.1 50 40-94 118-168 (198)
197 2d9o_A DNAJ (HSP40) homolog, s 99.2 3.2E-10 1.1E-14 66.3 8.4 37 52-93 27-63 (100)
198 2diu_A KIAA0430 protein; struc 99.1 1.2E-10 4E-15 67.5 6.1 42 42-93 8-55 (96)
199 2adc_A Polypyrimidine tract-bi 99.1 3.9E-10 1.3E-14 73.8 8.1 50 40-94 149-199 (229)
200 2dit_A HIV TAT specific factor 99.0 1.1E-09 3.7E-14 64.7 7.7 53 38-94 11-74 (112)
201 1jmt_A Splicing factor U2AF 35 99.0 5.3E-11 1.8E-15 69.9 0.7 46 47-93 20-77 (104)
202 1owx_A Lupus LA protein, SS-B, 99.0 1.1E-09 3.8E-14 66.0 5.4 50 38-93 14-64 (121)
203 3v4m_A Splicing factor U2AF 65 98.9 2E-09 6.7E-14 63.2 5.0 53 41-93 4-68 (105)
204 3ue2_A Poly(U)-binding-splicin 98.9 3.1E-09 1.1E-13 63.7 5.3 53 41-93 19-80 (118)
205 3s6e_A RNA-binding protein 39; 98.4 2.2E-07 7.7E-12 55.2 3.5 48 42-93 7-64 (114)
206 3dxb_A Thioredoxin N-terminall 98.1 5.3E-06 1.8E-10 53.7 4.8 41 54-94 141-185 (222)
207 2dnr_A Synaptojanin-1; RRM dom 97.8 7.1E-05 2.4E-09 42.8 5.4 46 40-93 5-58 (91)
208 1ufw_A Synaptojanin 2; RNP dom 97.3 0.00026 9E-09 40.7 4.0 47 39-93 12-67 (95)
209 1whv_A Poly(A)-specific ribonu 97.2 0.0023 8E-08 36.9 6.8 45 40-93 14-58 (100)
210 1uw4_A UPF3X; nonsense mediate 96.9 0.005 1.7E-07 35.0 6.4 52 43-94 2-55 (91)
211 2l9w_A U4/U6 snRNA-associated- 96.7 0.0059 2E-07 36.1 5.8 51 38-94 17-72 (117)
212 3ctr_A Poly(A)-specific ribonu 96.4 0.01 3.5E-07 34.3 5.5 43 42-93 6-48 (101)
213 3pq1_A Poly(A) RNA polymerase; 96.1 0.0049 1.7E-07 44.5 3.7 48 40-93 51-98 (464)
214 2dhx_A Poly (ADP-ribose) polym 95.4 0.14 4.8E-06 29.7 7.4 46 41-94 7-57 (104)
215 2l08_A Regulator of nonsense t 94.7 0.023 7.8E-07 32.7 2.6 53 41-93 8-62 (97)
216 3d45_A Poly(A)-specific ribonu 87.5 2.3 8E-05 30.8 7.0 44 41-93 439-482 (507)
217 4f25_A Polyadenylate-binding p 86.9 0.19 6.6E-06 28.8 0.9 20 39-58 94-113 (115)
218 1wwh_A Nucleoporin 35, nucleop 83.2 4.5 0.00015 23.9 5.6 48 39-93 21-68 (119)
219 3ts2_A Protein LIN-28 homolog 72.5 0.8 2.7E-05 27.9 0.1 28 57-92 2-29 (148)
220 2i9x_A Putative septation prot 66.5 10 0.00034 21.1 3.8 27 68-94 5-31 (87)
221 3mfb_A Uncharacterized protein 64.7 13 0.00043 23.0 4.4 36 54-89 3-41 (157)
222 1wey_A Calcipressin 1; structu 64.1 7 0.00024 22.5 3.0 36 41-76 4-44 (104)
223 2ia9_A Putative septation prot 60.8 14 0.00048 21.0 3.8 27 68-94 5-31 (100)
224 2i9z_A Putative septation prot 60.6 14 0.0005 21.2 3.9 27 68-94 5-31 (105)
225 4e8u_A Putative uncharacterize 58.0 29 0.00098 21.7 5.2 48 43-93 13-71 (172)
226 3fut_A Dimethyladenosine trans 51.0 9.7 0.00033 25.2 2.4 35 43-78 111-145 (271)
227 2jsh_A Appetite-regulating hor 45.7 9 0.00031 16.4 1.0 22 49-70 2-23 (26)
228 3uzu_A Ribosomal RNA small sub 44.7 4.5 0.00015 26.9 -0.1 36 43-78 115-150 (279)
229 3a0j_A Cold shock protein; OB- 40.1 12 0.00042 19.7 1.3 10 83-92 12-21 (73)
230 3tqs_A Ribosomal RNA small sub 39.5 4.1 0.00014 26.7 -0.9 34 45-78 99-132 (255)
231 1igq_A Transcriptional repress 39.5 37 0.0013 17.5 3.0 23 70-93 20-42 (62)
232 3ulj_A LIN28B, DNA-binding pro 39.4 13 0.00043 20.7 1.3 9 83-91 19-27 (90)
233 1g6p_A Cold shock protein TMCS 39.1 13 0.00045 19.1 1.3 10 83-92 11-20 (66)
234 2k5n_A Putative cold-shock pro 38.3 16 0.00054 19.4 1.5 11 83-93 13-23 (74)
235 3cam_A Cold-shock domain famil 34.8 20 0.00068 18.5 1.5 11 83-93 12-22 (67)
236 1c9o_A CSPB, cold-shock protei 34.6 20 0.00068 18.4 1.5 10 83-92 12-21 (66)
237 3aqq_A Calcium-regulated heat 34.3 19 0.00063 21.9 1.5 10 84-93 74-83 (147)
238 1h95_A CSD, Y-box binding prot 33.3 22 0.00075 19.0 1.6 11 83-93 19-29 (79)
239 2g2q_A Glutaredoxin-2; thiored 32.5 20 0.00068 21.2 1.4 33 60-95 60-92 (124)
240 1qyr_A KSGA, high level kasuga 31.2 25 0.00084 22.8 1.9 34 44-77 92-125 (252)
241 3i2z_B RNA chaperone, negative 30.8 25 0.00086 18.3 1.5 11 83-93 16-26 (71)
242 2ytv_A Cold shock domain-conta 30.1 15 0.00052 19.7 0.6 9 84-92 18-26 (79)
243 3ftd_A Dimethyladenosine trans 29.5 25 0.00084 22.7 1.6 36 43-78 96-131 (249)
244 2yty_A Cold shock domain-conta 28.5 26 0.00089 19.2 1.4 10 84-93 28-37 (88)
245 1i4w_A Mitochondrial replicati 28.2 20 0.00067 24.8 1.0 23 43-65 143-165 (353)
246 2lss_A Cold shock-like protein 34.1 12 0.00043 19.5 0.0 11 83-93 15-25 (70)
247 1x65_A UNR protein; cell-free 28.0 19 0.00064 19.9 0.7 10 84-93 18-27 (89)
248 2ytx_A Cold shock domain-conta 27.4 28 0.00094 19.4 1.4 11 83-93 27-37 (97)
249 1wfq_A UNR protein; beta-barre 27.3 30 0.001 19.0 1.5 10 84-93 28-37 (89)
250 4aj5_1 SKA3, spindle and kinet 21.7 31 0.0011 19.6 0.9 11 57-67 91-101 (101)
251 1ik9_C DNA ligase IV; DNA END 20.4 64 0.0022 14.6 1.7 17 50-66 18-34 (37)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=104.23 Aligned_cols=56 Identities=39% Similarity=0.536 Sum_probs=52.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+|++.
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~ 71 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCH
Confidence 34578999999999999999999999999999999999999999999999999863
No 2
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=5.1e-18 Score=101.43 Aligned_cols=59 Identities=36% Similarity=0.447 Sum_probs=54.7
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.......++|||+|||+++++++|+++|.+||.|.++++++|+.+|+++|||||+|.+.
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 92 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNP 92 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCH
Confidence 44556789999999999999999999999999999999999999999999999999874
No 3
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=8.7e-19 Score=106.88 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=52.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeE--EEEeecCCCCCcccEEEEEecc
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEE--AVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~--~~~~~d~~tg~~~G~~fV~f~s 93 (96)
..+...++|||+|||+++++++|+++|.+||.|.. |++++|+.||++||||||+|++
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~ 76 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLST 76 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECC
Confidence 44566789999999999999999999999999977 9999999999999999999986
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=102.62 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=51.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+||++++++++|+++|++||.|.++++++|+.||+++|||||+|++.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~ 58 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTST 58 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCH
Confidence 3568999999999999999999999999999999999999999999999999873
No 5
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=3e-18 Score=97.41 Aligned_cols=58 Identities=34% Similarity=0.696 Sum_probs=53.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..+...++|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 63 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDA 63 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESST
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCH
Confidence 3456788999999999999999999999999999999999999999999999999874
No 6
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=99.29 Aligned_cols=59 Identities=39% Similarity=0.653 Sum_probs=54.5
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.......++|||+|||+++++++|+++|.+||.|.+|.+++|+.+|+++|||||+|++.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 67 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY 67 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCH
Confidence 34556788999999999999999999999999999999999999999999999999873
No 7
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=1.5e-18 Score=103.03 Aligned_cols=64 Identities=38% Similarity=0.655 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 31 ~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
............++|||+|||+++++++|+++|++||.|.+|++++|+.+|+++|||||+|++.
T Consensus 14 ~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~ 77 (109)
T 2rs2_A 14 LVPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 77 (109)
T ss_dssp ------------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSH
T ss_pred CCccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCH
Confidence 3344445567789999999999999999999999999999999999999999999999999873
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.5e-18 Score=97.90 Aligned_cols=58 Identities=34% Similarity=0.641 Sum_probs=53.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.++.+++|+.+++++|||||+|++.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 62 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 62 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCH
Confidence 3455779999999999999999999999999999999999999999999999999873
No 9
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=9.6e-18 Score=99.90 Aligned_cols=59 Identities=34% Similarity=0.466 Sum_probs=54.1
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.......++|||+|||+++++++|+++|.+||.|.++++++|+.+++++|||||+|.+.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 77 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSH
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCH
Confidence 34455678999999999999999999999999999999999999999999999999863
No 10
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=98.68 Aligned_cols=59 Identities=39% Similarity=0.687 Sum_probs=54.8
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.......++|||+|||+++++++|+++|.+||.|.+|.+++|+.+|+++|||||+|++.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 68 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 68 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESST
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCH
Confidence 34556789999999999999999999999999999999999999999999999999874
No 11
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.9e-18 Score=99.49 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=52.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
..+...++|||+|||+++++++|+++|++||.|.+|.+++|+. |+++|||||+|++
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~ 61 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDS 61 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESS
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECC
Confidence 4456779999999999999999999999999999999999987 9999999999986
No 12
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=99.01 Aligned_cols=59 Identities=78% Similarity=1.139 Sum_probs=54.6
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...+...++|||+|||+++++++|+++|.+||.|.+|++++|+.+++++|||||+|.+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 69 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 69 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSH
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCH
Confidence 34556789999999999999999999999999999999999999999999999999873
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=98.04 Aligned_cols=58 Identities=29% Similarity=0.428 Sum_probs=53.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.++.+++|+.+++++|||||+|++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 67 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCH
Confidence 4456779999999999999999999999999999999999999999999999999873
No 14
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=1.6e-17 Score=98.85 Aligned_cols=60 Identities=37% Similarity=0.598 Sum_probs=55.0
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 35 SQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 35 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
........++|||+|||+++++++|+++|.+||.|.+|++++|+.+|+++|||||+|.+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 67 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 344556789999999999999999999999999999999999999999999999999863
No 15
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=100.82 Aligned_cols=56 Identities=39% Similarity=0.782 Sum_probs=52.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|.+||.|.+|.+++|+.+|+++|||||+|.+.
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 79 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 79 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCH
Confidence 44578999999999999999999999999999999999999999999999999873
No 16
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.4e-18 Score=100.24 Aligned_cols=57 Identities=21% Similarity=0.411 Sum_probs=53.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.+...++|||+|||+++++++|+++|.+||.|.+|.+++|+.+|+++|||||+|.+.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI 77 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCG
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcH
Confidence 345678999999999999999999999999999999999999999999999999874
No 17
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=95.69 Aligned_cols=59 Identities=34% Similarity=0.465 Sum_probs=54.3
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.......++|||+|||+++++++|+++|.+||.|.++.+++|+.+++++|||||+|++.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 67 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 67 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSH
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCH
Confidence 34456788999999999999999999999999999999999999999999999999873
No 18
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=8.3e-19 Score=101.13 Aligned_cols=52 Identities=25% Similarity=0.490 Sum_probs=49.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 42 WTKLFVGGLPYHTTDKSLREHFSVFG-DIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 42 ~~~l~v~~l~~~~~~~~l~~~F~~~G-~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
+.+|||+|||+++++++|+++|++|| .|.+|++++|+.||+++|||||+|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~ 53 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH 53 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecC
Confidence 36899999999999999999999999 89999999999999999999999987
No 19
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=98.41 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=53.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.+|++++|+.+|+++|||||+|.+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 67 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQ 67 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSH
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCH
Confidence 3445678999999999999999999999999999999999999999999999999863
No 20
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=2.2e-17 Score=96.72 Aligned_cols=57 Identities=32% Similarity=0.454 Sum_probs=52.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.++.+++|+ +|+++|||||+|.+.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 66 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSH 66 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCH
Confidence 344568999999999999999999999999999999999997 899999999999863
No 21
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=5.7e-18 Score=99.41 Aligned_cols=57 Identities=37% Similarity=0.591 Sum_probs=53.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
..+...++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+|.+
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 64 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCE 64 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECC
Confidence 455678999999999999999999999999999999999999999999999999986
No 22
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=97.05 Aligned_cols=58 Identities=28% Similarity=0.458 Sum_probs=54.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.+|.+++|+.+|+++|||||+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 67 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCH
Confidence 4456789999999999999999999999999999999999999999999999999873
No 23
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-18 Score=99.33 Aligned_cols=55 Identities=24% Similarity=0.395 Sum_probs=50.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGD--IEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~--i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..-.+|||+|||+++|+++|+++|++||. +.+|++++|+.||++||||||+|.+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~ 63 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSA 63 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSS
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCH
Confidence 34568999999999999999999999995 67999999999999999999999874
No 24
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=96.12 Aligned_cols=59 Identities=31% Similarity=0.345 Sum_probs=54.2
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeecCCCCCcccEEEEEeccC
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEE--------AVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~--------~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.......++|||+|||+++++++|+++|++||.|.+ +++++|+.+|+++|||||+|++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~ 73 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDP 73 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCH
Confidence 345566799999999999999999999999999999 99999999999999999999873
No 25
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=94.86 Aligned_cols=58 Identities=24% Similarity=0.440 Sum_probs=53.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.++.+++|+.+++++|||||+|++.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 68 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 68 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 3445678999999999999999999999999999999999999999999999999873
No 26
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=94.18 Aligned_cols=55 Identities=33% Similarity=0.488 Sum_probs=52.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 57 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP 57 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCH
Confidence 4578999999999999999999999999999999999999999999999999873
No 27
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=97.10 Aligned_cols=59 Identities=31% Similarity=0.581 Sum_probs=54.1
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeec-CCCCCcccEEEEEeccC
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITD-RQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d-~~tg~~~G~~fV~f~s~ 94 (96)
.......++|||+|||+++++++|+++|.+||.|.+|+++++ +.+|+++|||||+|.+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~ 68 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITK 68 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSH
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCH
Confidence 345567899999999999999999999999999999999999 78999999999999873
No 28
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=96.76 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=54.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+.....++|||+|||+++++++|+++|.+||.|.++.+++|+.+++++|||||+|.+.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 65 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDR 65 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSS
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCH
Confidence 4455679999999999999999999999999999999999999999999999999874
No 29
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.1e-17 Score=94.91 Aligned_cols=56 Identities=29% Similarity=0.557 Sum_probs=52.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
......++|||+|||+++++++|+++|.+||.|.+++++.|+ +|+++|||||+|.+
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~ 67 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYEN 67 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECC
Confidence 345667899999999999999999999999999999999997 99999999999986
No 30
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=96.83 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=51.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEE-AVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~-~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+.....++|||+|||+++++++|+++|.+||.|.+ +.+++| .+|+++|||||+|++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~ 67 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQ 67 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCH
Confidence 34456789999999999999999999999999988 889998 7999999999999874
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=96.83 Aligned_cols=57 Identities=28% Similarity=0.514 Sum_probs=53.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|.+||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 75 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 75 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCH
Confidence 345678999999999999999999999999999999999999999999999999873
No 32
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=1e-16 Score=98.18 Aligned_cols=60 Identities=32% Similarity=0.517 Sum_probs=55.0
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 35 SQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 35 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
........++|||+|||+++++++|+++|+.||.|.+|.+++|+.+|+++|||||+|.+.
T Consensus 35 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 94 (139)
T 1u6f_A 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSG 94 (139)
T ss_dssp SSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSH
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 344566789999999999999999999999999999999999999999999999999863
No 33
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=5.2e-17 Score=94.98 Aligned_cols=57 Identities=21% Similarity=0.378 Sum_probs=52.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+|| |.+|++++|+.+|+++|||||+|++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~ 66 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEV 66 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCH
Confidence 3445678999999999999999999999997 99999999999999999999999873
No 34
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=97.03 Aligned_cols=59 Identities=37% Similarity=0.643 Sum_probs=54.4
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.......++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 78 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 78 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCH
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 44556779999999999999999999999999999999999999999999999999863
No 35
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=95.77 Aligned_cols=56 Identities=23% Similarity=0.371 Sum_probs=52.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCee-EEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIE-EAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~-~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|.+||.|. ++++++|+.+|+++|||||+|.+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~ 62 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADL 62 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCH
Confidence 44679999999999999999999999999999 999999999999999999999863
No 36
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=104.35 Aligned_cols=55 Identities=27% Similarity=0.457 Sum_probs=50.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFG--DIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G--~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|.+|| .|.++++++|+.+|+++|||||+|.+.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~ 109 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASE 109 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCH
Confidence 3568999999999999999999999999 999999999999999999999999873
No 37
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=95.64 Aligned_cols=56 Identities=21% Similarity=0.444 Sum_probs=51.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC-CCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQT-GKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~t-g~~~G~~fV~f~s~ 94 (96)
+....++|||+|||+++++++|+++|.+|| |.+|.+++|+.+ |+++|||||+|++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~ 67 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDL 67 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSH
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCH
Confidence 445679999999999999999999999999 999999999988 99999999999873
No 38
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=93.09 Aligned_cols=55 Identities=40% Similarity=0.594 Sum_probs=50.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 58 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCH
Confidence 4568999999999999999999999999999999999999999999999999863
No 39
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=5.3e-18 Score=99.13 Aligned_cols=54 Identities=28% Similarity=0.364 Sum_probs=51.5
Q ss_pred CCccEEEEcCCCC------CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 40 TTWTKLFVGGLPY------HTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 40 ~~~~~l~v~~l~~------~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
...++|||+|||+ ++++++|+++|++||.|.++++++|+.||+++|||||+|++
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~ 63 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGS 63 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECC
Confidence 4578999999999 99999999999999999999999999999999999999986
No 40
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=98.35 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=51.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDI-EEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i-~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|.+||.| .+|++++|+ +|+++|||||+|++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~ 67 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNE 67 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSH
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCH
Confidence 44567899999999999999999999999999 899999998 999999999999874
No 41
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-17 Score=93.52 Aligned_cols=55 Identities=38% Similarity=0.706 Sum_probs=51.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.|.++.+++|+.+++++|||||+|++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 57 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 57 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCH
Confidence 4568999999999999999999999999999999999999999999999999863
No 42
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=94.73 Aligned_cols=56 Identities=30% Similarity=0.529 Sum_probs=52.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|.+||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 60 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP 60 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCH
Confidence 45678999999999999999999999999999999999998999999999999873
No 43
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=3.5e-17 Score=99.84 Aligned_cols=58 Identities=34% Similarity=0.464 Sum_probs=53.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.+|++++|+.+|+++|||||+|.+.
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~ 98 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 98 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH
Confidence 3455678999999999999999999999999999999999999999999999999873
No 44
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=97.84 Aligned_cols=58 Identities=38% Similarity=0.554 Sum_probs=54.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.......++|||+|||+++++++|+++|.+||.|.++++++|+.+|+++|||||+|++
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 114 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL 114 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESC
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECC
Confidence 3455678999999999999999999999999999999999999999999999999986
No 45
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-16 Score=94.60 Aligned_cols=57 Identities=26% Similarity=0.520 Sum_probs=52.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..+...++|||+|||+++++++|+++|.+||.|.++++++|+ +|+++|||||+|.+.
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~ 76 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMEST 76 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCH
Confidence 445677899999999999999999999999999999999998 999999999999874
No 46
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=8.4e-18 Score=96.38 Aligned_cols=52 Identities=33% Similarity=0.580 Sum_probs=47.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 43 TKLFVGGLPYHTTDKSLREHFSVFG--DIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 43 ~~l~v~~l~~~~~~~~l~~~F~~~G--~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.+|||+|||+++++++|+++|++|| .|.++++++|+.+|+++|||||+|++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~ 55 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSE 55 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCH
Confidence 4799999999999999999999999 999999999999999999999999873
No 47
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=3e-17 Score=92.69 Aligned_cols=56 Identities=39% Similarity=0.571 Sum_probs=52.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 59 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA 59 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCH
Confidence 34678999999999999999999999999999999999999999999999999863
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=93.59 Aligned_cols=57 Identities=26% Similarity=0.462 Sum_probs=51.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|++||.|.++++++|+. |+++|||||+|.+.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~ 67 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHP 67 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESST
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCH
Confidence 4456779999999999999999999999999999999999975 99999999999874
No 49
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=3.1e-17 Score=95.73 Aligned_cols=56 Identities=38% Similarity=0.647 Sum_probs=52.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|++||.|.++++++|+ +|+++|||||+|++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 60 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYND 60 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCH
Confidence 34467899999999999999999999999999999999998 999999999999875
No 50
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=5.3e-17 Score=91.29 Aligned_cols=52 Identities=44% Similarity=0.612 Sum_probs=49.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 43 ~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.+|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 53 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 53 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCH
Confidence 6899999999999999999999999999999999999999999999999873
No 51
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=4.2e-17 Score=96.31 Aligned_cols=58 Identities=28% Similarity=0.439 Sum_probs=53.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.++.++.|+.+|+++|||||+|.+.
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 78 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH 78 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 3455678999999999999999999999999999999999999999999999999873
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.6e-17 Score=93.77 Aligned_cols=57 Identities=35% Similarity=0.521 Sum_probs=52.3
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.......++|||+|||+++++++|+++|.+||.|.++.++++ +|+++|||||+|.+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~ 65 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSP 65 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSH
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCH
Confidence 345567899999999999999999999999999999999998 899999999999873
No 53
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=94.92 Aligned_cols=56 Identities=46% Similarity=0.787 Sum_probs=52.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.....++|||+|||+++++++|+++|.+||.|.++.+++|+.+++++|||||+|.+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 63 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 63 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC
Confidence 34567899999999999999999999999999999999999999999999999986
No 54
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-17 Score=94.59 Aligned_cols=56 Identities=34% Similarity=0.449 Sum_probs=52.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSV-FGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~-~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|.+ ||.|.++++++|+ +|+++|||||+|.+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~ 61 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDE 61 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCH
Confidence 4456789999999999999999999999 9999999999998 999999999999874
No 55
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.7e-17 Score=94.45 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=50.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|.+||.+ +|++++|+ +|+++|||||+|++.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~ 65 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATH 65 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCH
Confidence 34567899999999999999999999999955 99999997 999999999999875
No 56
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-17 Score=92.39 Aligned_cols=52 Identities=44% Similarity=0.809 Sum_probs=49.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 43 ~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
++|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 52 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 52 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCH
Confidence 4799999999999999999999999999999999999999999999999874
No 57
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=7.3e-17 Score=91.79 Aligned_cols=54 Identities=22% Similarity=0.528 Sum_probs=51.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+|.+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 58 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESST
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 468999999999999999999999999999999999999999999999999874
No 58
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-17 Score=95.51 Aligned_cols=56 Identities=39% Similarity=0.571 Sum_probs=52.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|.+||.|.++.+++|+.+++++|||||+|.+.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA 64 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 44678999999999999999999999999999999999999999999999999863
No 59
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.8e-17 Score=98.20 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=52.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.++.++.+..+|+++|||||+|++.
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~ 77 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNE 77 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSS
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCH
Confidence 3455678999999999999999999999999999877777778999999999999875
No 60
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=6e-17 Score=93.65 Aligned_cols=53 Identities=26% Similarity=0.520 Sum_probs=50.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 42 ~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+|.+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 54 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDL 54 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCH
Confidence 57999999999999999999999999999999999999999999999999873
No 61
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.8e-17 Score=95.55 Aligned_cols=58 Identities=26% Similarity=0.341 Sum_probs=53.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIE--------EAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~--------~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|. .+++++|+.+|+++|||||+|.+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~ 75 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 75 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSH
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCH
Confidence 4556789999999999999999999999999999 699999999999999999999873
No 62
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=5.5e-17 Score=105.61 Aligned_cols=55 Identities=33% Similarity=0.359 Sum_probs=50.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~ 67 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 67 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCH
Confidence 3457999999999999999999999999999999999999999999999999873
No 63
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=96.39 Aligned_cols=58 Identities=21% Similarity=0.429 Sum_probs=48.8
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecC-CCCCcccEEEEEeccC
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDR-QTGKSRGYGFVSPSFY 94 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~-~tg~~~G~~fV~f~s~ 94 (96)
.......++|||+|||+++++++|+++|++|| |.++++++|+ .+|+++|||||+|.+.
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~ 71 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDL 71 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCH
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCH
Confidence 34556789999999999999999999999999 9999999998 6999999999999873
No 64
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=2.5e-17 Score=91.18 Aligned_cols=51 Identities=37% Similarity=0.742 Sum_probs=48.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 44 ~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|++.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 51 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE 51 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCH
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 589999999999999999999999999999999999999999999999873
No 65
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.6e-17 Score=93.92 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=52.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~ 67 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCH
Confidence 344678999999999999999999999999999999999999999999999999873
No 66
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.7e-17 Score=93.50 Aligned_cols=55 Identities=31% Similarity=0.594 Sum_probs=51.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEA-VVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~-~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.|.++ ++++|+.+|+++|||||+|++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~ 58 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 58 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCH
Confidence 356899999999999999999999999999999 9999999999999999999863
No 67
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.3e-17 Score=91.27 Aligned_cols=51 Identities=37% Similarity=0.642 Sum_probs=49.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 44 ~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 51 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEE 51 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCH
Confidence 589999999999999999999999999999999999999999999999874
No 68
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.4e-17 Score=98.89 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=49.6
Q ss_pred ccEEEEcCC----CCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 42 WTKLFVGGL----PYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 42 ~~~l~v~~l----~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
+.+|||+|| |+.+++.+|+++|..||+|.++.++.|+.||+++|||||+|.+
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 368999999 9999999999999999999999999999999999999999985
No 69
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=2.1e-17 Score=99.51 Aligned_cols=55 Identities=25% Similarity=0.562 Sum_probs=52.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|.+||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 88 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAER 88 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCH
Confidence 4578999999999999999999999999999999999999999999999999863
No 70
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=9e-17 Score=92.23 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=45.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.......+|||+|||+++++++|+++|++||.|.+++++++ +||||||+|++.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~ 58 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADD 58 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCH
Confidence 34557889999999999999999999999999999999875 799999999873
No 71
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-16 Score=92.64 Aligned_cols=57 Identities=35% Similarity=0.462 Sum_probs=51.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.++.+++|+ +|+++|||||+|++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~ 66 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQS 66 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCH
Confidence 344567899999999999999999999999999999999997 699999999999873
No 72
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=1.2e-16 Score=96.30 Aligned_cols=58 Identities=29% Similarity=0.520 Sum_probs=53.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.+|.++.|+.+|+++|||||+|.+.
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 74 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 74 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH
Confidence 3455678999999999999999999999999999999999999999999999999873
No 73
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=95.38 Aligned_cols=55 Identities=40% Similarity=0.614 Sum_probs=51.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|++||.|.++.++.|+ +|+++|||||+|++.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~ 58 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENP 58 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCH
Confidence 4567899999999999999999999999999999999997 999999999999873
No 74
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=1.3e-16 Score=95.76 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=51.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGD---IEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~---i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||. |.+|++++|+. |+++|||||+|++.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~ 71 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESE 71 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCH
Confidence 33456789999999999999999999999999 89999999976 99999999999874
No 75
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=2.6e-16 Score=92.42 Aligned_cols=56 Identities=32% Similarity=0.417 Sum_probs=52.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
......++|||+|||+++++++|+++|.+||.|.++.+++++ +|+++|||||+|.+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~ 79 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFER 79 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECC
Confidence 344567899999999999999999999999999999999998 99999999999986
No 76
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=9.9e-17 Score=92.86 Aligned_cols=55 Identities=27% Similarity=0.436 Sum_probs=50.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCC---CCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQ---TGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~---tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.|.++.+++++. |++++|||||+|.+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~ 60 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKP 60 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCH
Confidence 4568999999999999999999999999999999999876 679999999999863
No 77
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=1.9e-16 Score=100.84 Aligned_cols=58 Identities=43% Similarity=0.808 Sum_probs=53.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|++||.|.+|.+++|+.+|+++|||||+|.+.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 65 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCH
Confidence 3456788999999999999999999999999999999999999999999999999873
No 78
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.67 E-value=2.4e-16 Score=98.24 Aligned_cols=57 Identities=32% Similarity=0.455 Sum_probs=53.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+|.+.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~ 122 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 122 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCH
Confidence 345678999999999999999999999999999999999999999999999999873
No 79
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.9e-17 Score=95.43 Aligned_cols=56 Identities=36% Similarity=0.693 Sum_probs=52.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+...++|||+|||+++++++|+++|.+||.|.++.+++++.+|+++|||||+|.+.
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 60 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 60 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCH
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCH
Confidence 34568999999999999999999999999999999999999999999999999863
No 80
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=1.1e-15 Score=92.04 Aligned_cols=56 Identities=32% Similarity=0.408 Sum_probs=52.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|.+||.|.++.+++|+ +|+++|||||+|++.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~ 86 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERR 86 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCH
Confidence 44567899999999999999999999999999999999998 999999999999874
No 81
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=3.1e-16 Score=97.81 Aligned_cols=58 Identities=28% Similarity=0.381 Sum_probs=53.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.+|.|++|+.+++++|||||+|.+.
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 91 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSR 91 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH
Confidence 3445679999999999999999999999999999999999999999999999999873
No 82
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.8e-17 Score=93.86 Aligned_cols=52 Identities=37% Similarity=0.660 Sum_probs=49.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 43 ~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
++|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 53 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEE 53 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTT
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 5899999999999999999999999999999999999999999999999874
No 83
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=1.7e-16 Score=105.06 Aligned_cols=54 Identities=31% Similarity=0.550 Sum_probs=50.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFG--DIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G--~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+||++++++++|+++|.+|| .|.+|+|++|+.||++||||||+|++.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~ 122 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSE 122 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCH
Confidence 677999999999999999999999999 999999999999999999999999874
No 84
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=8.4e-17 Score=95.92 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=49.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC---CCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQT---GKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~t---g~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|++.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~ 62 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEE 62 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCH
Confidence 4578999999999999999999999999999 888888877 79999999999873
No 85
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=89.37 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=51.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+| .|.+++++++ .+|+++|||||+|++.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~ 60 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNE 60 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSH
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCH
Confidence 445677999999999999999999999999 9999999999 7999999999999874
No 86
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=2.6e-16 Score=95.88 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=49.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCee--EEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIE--EAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~--~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|++| .|. +|+|++|+. |+++|||||+|++.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~ 94 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQ 94 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESST
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCH
Confidence 44567899999999999999999999999 677 999999986 99999999999874
No 87
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9e-16 Score=89.59 Aligned_cols=56 Identities=30% Similarity=0.573 Sum_probs=50.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.++++++|+. .++|||||+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~ 65 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENS 65 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCH
Confidence 4556789999999999999999999999999999999999863 4999999999873
No 88
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=94.19 Aligned_cols=54 Identities=19% Similarity=0.398 Sum_probs=49.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.....++|||+|||+++++++|+++|++| .|.+|+|++|+. |+++|||||+|++
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~ 65 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLS 65 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECC
Confidence 34456899999999999999999999999 899999999975 9999999999986
No 89
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=93.30 Aligned_cols=56 Identities=21% Similarity=0.433 Sum_probs=51.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEe-ecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGD-IEEAVVI-TDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~-i~~~~~~-~d~~tg~~~G~~fV~f~s~ 94 (96)
+...++|||+|||+++++++|+++|.+||. |.++.++ .|+.+|+++|||||+|.+.
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~ 62 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESH 62 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSH
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCH
Confidence 345789999999999999999999999998 9999998 8989999999999999873
No 90
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=6.3e-17 Score=93.16 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=50.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+|||+++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~ 67 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCH
Confidence 458999999999999999999999999999999999999999999999999863
No 91
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=93.42 Aligned_cols=49 Identities=12% Similarity=0.237 Sum_probs=45.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
....++|||+|||+++++++|+++|++||.|.++.++++ ||||||+|++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~ 61 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNT 61 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECC
Confidence 456789999999999999999999999999999999875 7999999986
No 92
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=1.7e-16 Score=97.83 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=52.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGD---IEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~---i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+.....++|||+|||+++++++|+++|++||. |.+|++++|+. |+++|||||+|++.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~ 98 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSE 98 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCH
Confidence 34556789999999999999999999999999 89999999986 99999999999873
No 93
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.66 E-value=2.4e-16 Score=94.14 Aligned_cols=51 Identities=33% Similarity=0.552 Sum_probs=46.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 42 ~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..+|||+|||+++++++|+++|.+||.|.+|++++|+ +.+||||||+|++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~ 55 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 55 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCH
Confidence 4689999999999999999999999999999999995 55899999999873
No 94
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=90.15 Aligned_cols=55 Identities=27% Similarity=0.387 Sum_probs=50.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCC-cccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGK-SRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~-~~G~~fV~f~s~ 94 (96)
..+++|||+|||+++++++|+++|++||.|.++.+++++.++. ++|||||+|.+.
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~ 57 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP 57 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecH
Confidence 3578999999999999999999999999999999999988776 999999999873
No 95
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.4e-16 Score=90.55 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=46.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|++||.|.++.++++ ||||||+|++.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~ 61 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATE 61 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCH
Confidence 34456789999999999999999999999999999998765 79999999873
No 96
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.9e-16 Score=89.84 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=49.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.+|++++|+. .++|||||+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~ 65 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEH 65 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSH
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCH
Confidence 4456789999999999999999999999999999999999854 3799999999863
No 97
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=92.69 Aligned_cols=58 Identities=28% Similarity=0.533 Sum_probs=51.6
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 35 SQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 35 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
........++|||+|||.++++++|+++|++||.|.++++++|+ ++++|||||+|++.
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~ 79 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENS 79 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCS
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCH
Confidence 34456678999999999999999999999999999999999985 45999999999874
No 98
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=5.3e-16 Score=97.71 Aligned_cols=57 Identities=26% Similarity=0.431 Sum_probs=52.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|.+||.|..|.++.++.+|+++|||||+|.+.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 124 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH 124 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCH
Confidence 345678999999999999999999999999999999999999999999999999873
No 99
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=93.90 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=51.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGD---IEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~---i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|..||. |.++++++|+. |+++|||||+|++.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~ 65 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESE 65 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSH
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCH
Confidence 34567889999999999999999999999988 89999999986 99999999999874
No 100
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=7.3e-16 Score=88.16 Aligned_cols=54 Identities=30% Similarity=0.429 Sum_probs=49.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|.+||.|.++.++++ +|+++|||||+|.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~ 58 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESP 58 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCH
Confidence 456789999999999999999999999999999999985 799999999999873
No 101
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=2.8e-16 Score=97.78 Aligned_cols=54 Identities=39% Similarity=0.739 Sum_probs=51.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+.++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+|.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 55 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKP 55 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESST
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccH
Confidence 568999999999999999999999999999999999999999999999999864
No 102
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=88.00 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=46.3
Q ss_pred ccEEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 42 WTKLFVGGLPYHT------TDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 42 ~~~l~v~~l~~~~------~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.++|||+|||+++ ++++|+++|++||.|.++.++ +.+|+++|||||+|++.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~ 57 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASP 57 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCH
Confidence 3689999999999 779999999999999999987 46899999999999873
No 103
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.6e-15 Score=89.46 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=44.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
....++|||+|||+++++++|+++|++||.|.++.++++ ||||||+|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~ 60 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFEN 60 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECC
Confidence 345689999999999999999999999999999998764 7999999986
No 104
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=1.8e-16 Score=97.25 Aligned_cols=57 Identities=32% Similarity=0.466 Sum_probs=53.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
......++|||+|||+++++++|+++|++||.|.++.+++|+.+++++|||||+|++
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~ 98 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 98 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECC
Confidence 445567899999999999999999999999999999999999999999999999987
No 105
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=7.2e-16 Score=90.63 Aligned_cols=55 Identities=24% Similarity=0.363 Sum_probs=49.1
Q ss_pred CCCCccEEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHT------TDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~------~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++ ++++|+++|++||.|.++.++ +.+|+++|||||+|.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~ 71 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASP 71 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSS
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCH
Confidence 34457899999999999 789999999999999999988 36899999999999875
No 106
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=95.23 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=49.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCe----eEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDI----EEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i----~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|++||.| .+|+|++| .+|+++|||||+|++.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~ 78 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACE 78 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCH
Confidence 3567899999999999999999999999975 68999999 5999999999999873
No 107
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.6e-15 Score=87.85 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=48.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
......++|||+|||+++++++|+++|.+||.|.++.+.. +++++|||||+|++
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~ 70 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFED 70 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECC
Confidence 4455678999999999999999999999999999999955 46689999999986
No 108
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=91.82 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=45.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.....++|||+|||+++++++|+++|++||.|.++.++++ ||||||+|++
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~ 76 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNT 76 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECC
Confidence 3445789999999999999999999999999999999876 7999999986
No 109
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=89.47 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=45.6
Q ss_pred CCCCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPY-HTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~-~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+ ++++++|+++|++||.|.++.++++ +|||||+|++.
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~ 62 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATT 62 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSH
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCH
Confidence 344678999999999 9999999999999999999999875 48999999863
No 110
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=3.6e-16 Score=96.68 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=48.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|++|| |.+|+|++|+. |+++|||||+|++.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~ 96 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATH 96 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCH
Confidence 445678999999999999999999999999 77999999975 99999999999863
No 111
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.3e-15 Score=89.35 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=45.5
Q ss_pred CCCCCccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 37 QKDTTWTKLFVGGLPYH-TTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~-~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
......++|||+|||++ +++++|+++|++||.|.++.+++ +||||||+|++
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~ 71 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMET 71 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSS
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECC
Confidence 34556889999999998 99999999999999999999874 47999999986
No 112
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.60 E-value=1.7e-15 Score=94.57 Aligned_cols=54 Identities=35% Similarity=0.536 Sum_probs=50.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCC--CcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTG--KSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg--~~~G~~fV~f~s~ 94 (96)
+.++|||+|||+++++++|+++|++||.|.++++++++.+| +++|||||+|.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~ 57 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR 57 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCH
Confidence 46899999999999999999999999999999999998887 8999999999863
No 113
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-16 Score=92.91 Aligned_cols=55 Identities=25% Similarity=0.354 Sum_probs=49.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|.+||.|.. .+++|+.+|+++|||||+|++.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~ 68 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESA 68 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCH
Confidence 345789999999999999999999999999988 7788888999999999999873
No 114
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.8e-16 Score=87.39 Aligned_cols=50 Identities=28% Similarity=0.439 Sum_probs=45.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.|.+++++++ ++|||||+|++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~ 52 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADD 52 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCH
Confidence 35689999999999999999999999999999998765 799999999873
No 115
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=3.1e-15 Score=92.66 Aligned_cols=53 Identities=38% Similarity=0.559 Sum_probs=50.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 42 ~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~ 54 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 54 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCH
Confidence 57999999999999999999999999999999999998999999999999863
No 116
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=86.85 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=48.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLR----EHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~----~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+ ++|.+||.|.++++++|+.+ +|||||+|++.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~ 62 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENL 62 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCH
Confidence 3456899999999999999999 99999999999999999765 89999999863
No 117
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.6e-15 Score=89.03 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=50.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHH---HHhccCCCeeEEEEeecCCCC---CcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLR---EHFSVFGDIEEAVVITDRQTG---KSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~---~~F~~~G~i~~~~~~~d~~tg---~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+ ++|.+||.|.++.+++|+.++ +++|||||+|++.
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~ 73 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS 73 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSH
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcH
Confidence 34467899999999999999999 999999999999999998754 5669999999873
No 118
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.4e-15 Score=86.35 Aligned_cols=53 Identities=30% Similarity=0.458 Sum_probs=46.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.+...++|||+|||+++++++|+++|.+||.| +++++ .+++++|||||+|++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~ 63 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASF 63 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCH
Confidence 45568999999999999999999999999977 56677 6899999999999873
No 119
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=7e-15 Score=86.33 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=44.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.....++|||+|||+++++++|+++|++||.|.++.+++ .||||||+|++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~ 66 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFED 66 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECC
Confidence 334678999999999999999999999999999999875 47899999986
No 120
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=2.9e-15 Score=93.14 Aligned_cols=54 Identities=35% Similarity=0.485 Sum_probs=51.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+|||+++++++|+++|++||.|.++++++++.+|+++|||||+|.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 55 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSE 55 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCH
Confidence 458999999999999999999999999999999999999999999999999863
No 121
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.4e-16 Score=95.07 Aligned_cols=57 Identities=32% Similarity=0.356 Sum_probs=52.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEE--------AVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~--------~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|.+||.|.+ +.+++|+.+|+++|||||+|.+.
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~ 67 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDP 67 (116)
Confidence 3456789999999999999999999999999999 99999999999999999999874
No 122
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=6e-15 Score=89.87 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=45.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLR----EHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~----~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
....++|||+|||+++++++|+ ++|++||.|.+|.+. .+++++|||||+|++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~ 81 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFAT 81 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECC
Confidence 3457899999999999999876 699999999998774 378999999999986
No 123
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=84.90 Aligned_cols=49 Identities=29% Similarity=0.346 Sum_probs=45.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|.+||.|.++.+++| |||||+|++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~ 60 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRK 60 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCH
Confidence 456789999999999999999999999999999999887 8999999874
No 124
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=84.72 Aligned_cols=55 Identities=38% Similarity=0.583 Sum_probs=48.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|..|+ .+.+++++.+++++|||||+|++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~ 64 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSE 64 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSH
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCH
Confidence 4456779999999999999999999999773 778889989999999999999863
No 125
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.56 E-value=7.4e-15 Score=94.61 Aligned_cols=55 Identities=25% Similarity=0.491 Sum_probs=49.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+|.+.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 80 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP 80 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSH
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCH
Confidence 4568999999999999999999999999999999999999999999999999863
No 126
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=6.4e-15 Score=94.07 Aligned_cols=54 Identities=33% Similarity=0.448 Sum_probs=50.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|.+||.|.+|.++.|+ +|+++|||||+|.+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~ 139 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERR 139 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCH
Confidence 456899999999999999999999999999999999998 999999999999873
No 127
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.56 E-value=1.2e-14 Score=92.33 Aligned_cols=55 Identities=40% Similarity=0.670 Sum_probs=51.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 4568999999999999999999999999999999999999999999999999873
No 128
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-15 Score=90.20 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=47.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|.+||.|..+.+..+..+|+++|||||+|.+.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNK 77 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCH
Confidence 344678999999999999999999999999995443333334899999999999873
No 129
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.3e-14 Score=88.63 Aligned_cols=57 Identities=40% Similarity=0.542 Sum_probs=53.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCH
Confidence 445678999999999999999999999999999999999999999999999999873
No 130
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2e-14 Score=83.33 Aligned_cols=52 Identities=31% Similarity=0.614 Sum_probs=46.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.++.+.++ +|||||+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~ 61 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETR 61 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCH
Confidence 34456789999999999999999999999999999999754 78999999874
No 131
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.1e-14 Score=80.87 Aligned_cols=52 Identities=35% Similarity=0.563 Sum_probs=46.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+.+...++|||+|||+++++++|+++|.+||.|.++.++++ +|||||+|++.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~ 58 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATR 58 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSH
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCH
Confidence 34456789999999999999999999999999999999864 79999999873
No 132
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.55 E-value=1.1e-14 Score=104.14 Aligned_cols=55 Identities=33% Similarity=0.683 Sum_probs=51.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|.+||.|..|.|+.|+.+|+++|||||+|.+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~ 154 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHE 154 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccH
Confidence 3457999999999999999999999999999999999999999999999999874
No 133
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.55 E-value=2.1e-14 Score=89.57 Aligned_cols=55 Identities=33% Similarity=0.566 Sum_probs=52.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 3478999999999999999999999999999999999998999999999999874
No 134
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3.2e-14 Score=82.14 Aligned_cols=50 Identities=24% Similarity=0.411 Sum_probs=44.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|++||.|.++.+..+ +|||||+|++.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~ 63 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESL 63 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCH
Confidence 345689999999999999999999999999999998754 78999999863
No 135
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.54 E-value=2.3e-14 Score=85.00 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=47.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|++||.|.++.++++ ++++|||||+|.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~ 57 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDI 57 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCH
Confidence 345689999999999999999999999999999999876 55699999999873
No 136
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.54 E-value=6.1e-14 Score=89.23 Aligned_cols=56 Identities=32% Similarity=0.567 Sum_probs=52.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|.+||.|.++.+.+|+.+|+++|||||+|.+.
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~ 166 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 166 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCH
Confidence 35678999999999999999999999999999999999998999999999999874
No 137
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=1.6e-14 Score=85.42 Aligned_cols=52 Identities=29% Similarity=0.524 Sum_probs=44.7
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 35 SQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 35 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....+...++|||+|||+++++++|+++|.+||.|.++.++ +|||||+|.+.
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~ 75 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEA 75 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSH
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCH
Confidence 34456678999999999999999999999999999999987 79999999863
No 138
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.54 E-value=6.6e-14 Score=82.59 Aligned_cols=49 Identities=24% Similarity=0.458 Sum_probs=43.9
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYH-TTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~-~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||++ +++++|+++|.+||.|.+|.+ ++|||||+|++.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~ 72 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNE 72 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSS
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCH
Confidence 3345689999999999 999999999999999999988 589999999874
No 139
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.3e-14 Score=82.20 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=45.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|.+||.|. +.++. ++++|||||+|.+.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~ 66 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDS 66 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSH
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCH
Confidence 345678999999999999999999999999997 66664 47899999999863
No 140
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=2.5e-14 Score=92.42 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=49.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+|||+++++++|+++|++||.|.+|+++++. +|+++|||||+|++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~ 160 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSI 160 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSH
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCH
Confidence 46899999999999999999999999999999999986 699999999999863
No 141
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.8e-14 Score=82.91 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=44.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|.+||.|.++++. +++|||||+|.+.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~ 73 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTH 73 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSH
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCH
Confidence 3456899999999999999999999999999999987 4689999999863
No 142
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.52 E-value=2.6e-14 Score=88.46 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=47.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|.++++++| ++|||||+|.+.
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~ 120 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDP 120 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSH
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCH
Confidence 44566789999999999999999999999999999999887 589999999873
No 143
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.52 E-value=3.7e-14 Score=91.32 Aligned_cols=55 Identities=27% Similarity=0.606 Sum_probs=51.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+|.+.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 177 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH
Confidence 4568999999999999999999999999999999999999999999999999873
No 144
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.52 E-value=6.8e-14 Score=86.86 Aligned_cols=56 Identities=32% Similarity=0.504 Sum_probs=52.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||.++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 34568999999999999999999999999999999999998999999999999873
No 145
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=4.1e-14 Score=82.08 Aligned_cols=53 Identities=23% Similarity=0.426 Sum_probs=43.9
Q ss_pred CCCCCCCCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 34 NSQQKDTTWTKLFVGGLPY-HTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 34 ~~~~~~~~~~~l~v~~l~~-~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.........++|||+|||+ ++++++|+++|.+||.|.++.+. +|||||+|++.
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~ 67 (97)
T 2xnq_A 14 LVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNP 67 (97)
T ss_dssp -----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSH
T ss_pred cccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCH
Confidence 3344556789999999998 99999999999999999999882 79999999863
No 146
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.6e-14 Score=82.93 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=43.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
....|||+||++.++|++|+++|.+||+|.++++.. +||||||+|.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~ 52 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTT 52 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESS
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECC
Confidence 356899999999999999999999999999999865 69999999986
No 147
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.52 E-value=1e-14 Score=90.62 Aligned_cols=54 Identities=39% Similarity=0.656 Sum_probs=51.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 466999999999999999999999999999999999999999999999999873
No 148
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.51 E-value=5.7e-14 Score=86.90 Aligned_cols=55 Identities=36% Similarity=0.561 Sum_probs=51.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||.++++++|+++|++||.|.++++++++.+|+++|||||+|.+.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 4567899999999999999999999999999999999998999999999999874
No 149
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.4e-14 Score=79.86 Aligned_cols=48 Identities=33% Similarity=0.645 Sum_probs=43.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|.+||.|.++.++ +|||||+|.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~ 52 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDK 52 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCH
Confidence 4567899999999999999999999999999999987 68999999873
No 150
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.5e-14 Score=88.50 Aligned_cols=51 Identities=29% Similarity=0.446 Sum_probs=47.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 43 ~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
++|||+|||+++++++|+++|++||.|.++.+++++ +++++|||||+|.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~ 51 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQS 51 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSH
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCH
Confidence 589999999999999999999999999999999996 588999999999863
No 151
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-14 Score=83.33 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=44.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 43 ~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
++|||+|||+++++++|+++|++||.|.++.++++ ++|||||+|.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~ 47 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDP 47 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCH
Confidence 58999999999999999999999999999999887 799999999873
No 152
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=1e-14 Score=84.10 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=47.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLR----EHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~----~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+ ++|.+||.|.++.+.+ +|+++|||||+|.+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~ 61 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEV 61 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCH
Confidence 4467899999999999999999 9999999999998863 688999999999873
No 153
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=79.36 Aligned_cols=50 Identities=24% Similarity=0.470 Sum_probs=44.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|.+||.|.+| +.|+.+|+ ||||+|.+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~ 55 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDV 55 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCH
Confidence 356799999999999999999999999999987 67777777 999999873
No 154
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.8e-14 Score=83.07 Aligned_cols=51 Identities=33% Similarity=0.553 Sum_probs=46.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|.+||.|.++.++++ +|||||+|.+.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~ 71 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTH 71 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCH
Confidence 3456789999999999999999999999999999999876 79999999873
No 155
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=5.9e-14 Score=87.53 Aligned_cols=55 Identities=35% Similarity=0.531 Sum_probs=50.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|++||.|.++++++++ +|+++|||||+|.+.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~ 146 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTR 146 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSH
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCH
Confidence 3467899999999999999999999999999999999995 699999999999873
No 156
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=1.5e-14 Score=83.22 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=46.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|.+||.|..+ ..+++++|||||+|.+.
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~ 63 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSE 63 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCH
Confidence 345578999999999999999999999999988766 35799999999999873
No 157
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.48 E-value=3.6e-14 Score=84.61 Aligned_cols=51 Identities=14% Similarity=0.048 Sum_probs=45.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFG-DIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G-~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++|| .|..+.+.. ++++|||||+|++.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~ 77 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSE 77 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCH
Confidence 4568999999999999999999999999 899998753 35899999999874
No 158
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=78.78 Aligned_cols=50 Identities=30% Similarity=0.493 Sum_probs=44.8
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.......++|||+|||+++++++|+++|++||.|.++.++++ ||||+|++
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~ 53 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMER 53 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECC
Confidence 345667899999999999999999999999999999998743 99999987
No 159
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=3.6e-14 Score=84.22 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=43.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
....++|||+|||+++++++|+++|.+||.|.+|.++. ++|||||+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~ 55 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLE 55 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCC
Confidence 33568999999999999999999999999999998863 57899999986
No 160
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3e-13 Score=78.29 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=44.2
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVF--GDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 36 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~--G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.......++|||+|||+++++++|+++|.+| |.|.++.+. +|||||+|.+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~ 61 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNR 61 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSH
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCH
Confidence 3444567899999999999999999999999 999998764 67999999873
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=8.3e-14 Score=80.11 Aligned_cols=53 Identities=26% Similarity=0.218 Sum_probs=46.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEA-VVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~-~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|.+||.|.++ .+++|+.+|+ |||+|.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~ 64 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSK 64 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSH
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCH
Confidence 34457899999999999999999999999999999 5888876655 99999874
No 162
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=9.9e-15 Score=89.75 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=45.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEE--E---eecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAV--V---ITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~--~---~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|.+||.|..+. + ++...+|+++|||||+|.+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~ 102 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNE 102 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCH
Confidence 44668999999999999999999999999998741 1 11135799999999999863
No 163
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.4e-13 Score=79.37 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=42.6
Q ss_pred CCCCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPY-HTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~-~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+ ++++++|+++|.+||.|.++.+. +|||||+|.+.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~ 55 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNP 55 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCH
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCH
Confidence 345688999999998 99999999999999999999883 78999999863
No 164
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.9e-14 Score=84.14 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=42.6
Q ss_pred CCccEEEE--cCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 40 TTWTKLFV--GGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 40 ~~~~~l~v--~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
...++||| |||++++++++|+++|++||.|.++.++. .||||||+|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~ 72 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRT 72 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESS
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECC
Confidence 44678999 88999999999999999999999998753 27999999986
No 165
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.45 E-value=6.5e-14 Score=83.50 Aligned_cols=48 Identities=29% Similarity=0.355 Sum_probs=42.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|.+||.|.+|.++.| |||||+|++.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~ 61 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRK 61 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCH
Confidence 45689999999999999999999999999999999876 8999999874
No 166
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.45 E-value=2.3e-13 Score=79.38 Aligned_cols=47 Identities=28% Similarity=0.444 Sum_probs=42.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|.+||.|.++.++ +|||||+|.+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~ 55 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDER 55 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCH
Confidence 456899999999999999999999999999999986 45999999863
No 167
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.8e-13 Score=76.89 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=43.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|+ ++++++|+++|.+||.|.+|.+. +++|||||+|.+.
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~ 59 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKM 59 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSH
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCH
Confidence 34456789999995 89999999999999999999883 6789999999863
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.44 E-value=2e-13 Score=77.06 Aligned_cols=49 Identities=18% Similarity=0.467 Sum_probs=44.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVF----G-------DIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~----G-------~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|.+| | .|.++.+.++ +|||||+|++.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~ 63 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSV 63 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCH
Confidence 467899999999999999999999999 8 8999988754 79999999873
No 169
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.9e-13 Score=77.12 Aligned_cols=50 Identities=28% Similarity=0.353 Sum_probs=44.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|++||.|.++.+++ +||||+|.+.
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~ 53 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKE 53 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCH
Confidence 3455678999999999999999999999999999999874 3999999873
No 170
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.43 E-value=4.8e-13 Score=89.70 Aligned_cols=54 Identities=31% Similarity=0.485 Sum_probs=51.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+|||+++++++|+++|.+||.|.++.+++|+.+|+++|||||+|.+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 147 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKK 147 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCH
Confidence 457999999999999999999999999999999999999999999999999863
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.42 E-value=4.2e-13 Score=89.89 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=48.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLR----EHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~----~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+....++|||+|||+++++++|+ ++|.+||.|.+|++++ +|+++|||||+|.+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~ 62 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEV 62 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCH
Confidence 44568899999999999999977 8999999999998875 789999999999873
No 172
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.42 E-value=4.4e-13 Score=89.51 Aligned_cols=53 Identities=34% Similarity=0.496 Sum_probs=49.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+|||+++++++|+++|.+||.|.++.+++| .+|+++|||||+|.+.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~ 147 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAK 147 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCH
Confidence 3578999999999999999999999999999999999 5999999999999873
No 173
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=5.3e-13 Score=84.45 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=45.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.....+|||+||++.+++++|+++|++||.|++|.+..+ +++|||||+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d 93 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYAD 93 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESC
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECC
Confidence 445678999999999999999999999999999998643 368999999986
No 174
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.40 E-value=5.2e-13 Score=86.70 Aligned_cols=52 Identities=33% Similarity=0.539 Sum_probs=47.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+|||+++++++|+++|.+||.|.++++++|+ +.++|||||+|.+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~ 153 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 153 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCH
Confidence 45689999999999999999999999999999999985 55899999999873
No 175
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.39 E-value=3.9e-13 Score=76.41 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=42.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+|||+++++++|+++|.+| .|.++++. +++|||||+|.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~ 50 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNG 50 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCH
Confidence 56889999999999999999999999 99999884 6799999999874
No 176
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=2e-13 Score=78.18 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=41.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGD-IEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~-i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||+++++++|+++|.+||. |..+.+ .++|||||+|++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~~ 54 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQ 54 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-------cCCCEEEEEECCH
Confidence 345689999999999999999999999999 666655 2589999999873
No 177
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.38 E-value=8.7e-13 Score=85.75 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=44.6
Q ss_pred CccEEEEcCCC-CCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLP-YHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~-~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+||+ +++++++|+++|.+||.|.+|+++++ ++|||||+|++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~ 52 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADG 52 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCH
Confidence 56899999999 89999999999999999999999876 379999999873
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=8.5e-12 Score=75.67 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=41.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccE-EEEEecc
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY-GFVSPSF 93 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~-~fV~f~s 93 (96)
.....|||+||++.+++++|+++|++||.|.+|.+.. + .|| |||+|++
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~ 71 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFES 71 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESS
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECC
Confidence 3455789999999999999999999999999999864 2 286 9999986
No 179
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.35 E-value=2.8e-12 Score=78.39 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=44.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccE-EEEEecc
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY-GFVSPSF 93 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~-~fV~f~s 93 (96)
......+|||+||++.+++++|+++|++||.|.+|.+..+ .+|| |||+|++
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~ 75 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYAD 75 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESC
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECC
Confidence 3456678999999999999999999999999999988764 2688 9999986
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.35 E-value=1.4e-12 Score=85.56 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=47.0
Q ss_pred CCCCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPY-HTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~-~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+ ++++++|+++|++||.|.++++++|+ +|||||+|.+.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~ 82 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADG 82 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCH
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCH
Confidence 345678999999999 99999999999999999999999875 88999999863
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.35 E-value=1.2e-12 Score=88.03 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=50.0
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCC-CCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYH-TTDKSLREHFSVFGDIEEAVVITDRQ-TGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~-~~~~~l~~~F~~~G~i~~~~~~~d~~-tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||++ +++++|+++|.+||.|.++++++|+. ||+++|||||+|.+.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 3456789999999999 99999999999999999999999876 699999999999873
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.34 E-value=2.8e-12 Score=85.97 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=50.8
Q ss_pred CCCCccEEEEcCCCCCC-CHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHT-TDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~-~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++ ++++|+++|++||.|.++.+++|+ +|+++|||||+|.+.
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETA 236 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSH
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCH
Confidence 34567899999999995 999999999999999999999996 899999999999873
No 183
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.34 E-value=9.2e-13 Score=85.63 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=47.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCe--eEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDI--EEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i--~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|++||.| .+++++.++ ++.+|||||+|++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~ 175 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSK 175 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSH
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCH
Confidence 346789999999999999999999999999 899998875 66779999999873
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.34 E-value=1.9e-12 Score=87.04 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=46.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|..||.|.+|++++|+.+ ++|||||+|.+.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~ 91 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARY 91 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCH
Confidence 34567899999999999999999999999999999999998633 589999999863
No 185
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=1.1e-13 Score=86.70 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=48.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
......++|||+|||+++++++|+++|..||.+.. .++++..+|+++|||||+|.+.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~ 64 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESA 64 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCH
Confidence 34567899999999999999999999999998766 4456667899999999999863
No 186
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.32 E-value=3.1e-12 Score=76.98 Aligned_cols=49 Identities=29% Similarity=0.325 Sum_probs=42.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|+ ++++++|+++|++||.|.+|.+. +++|||||+|++.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKM 83 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSH
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCH
Confidence 3456789999995 79999999999999999999885 6789999999863
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.31 E-value=2e-11 Score=81.67 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=45.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
....++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~ 254 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNE 254 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCH
Confidence 4457899999999999999999999999999999998664 68999999873
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.31 E-value=6.6e-12 Score=83.77 Aligned_cols=51 Identities=29% Similarity=0.605 Sum_probs=45.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 37 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
......++|||+|||+++++++|+++|.+||.|.++.+.+ ++|||||+|.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~ 67 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLES 67 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSS
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECC
Confidence 4456678999999999999999999999999999999864 37999999986
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.31 E-value=5.3e-12 Score=78.98 Aligned_cols=52 Identities=25% Similarity=0.332 Sum_probs=45.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....++|||+|||+++++++|+++|++||.|..+ ..+|+++|||||+|.+.
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSH
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCH
Confidence 34567899999999999999999999999988766 46899999999999873
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.28 E-value=2.6e-12 Score=81.97 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=45.0
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPY-HTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~-~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+|||+ ++++++|+++|++||.|.++++++++ +|||||+|.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~ 51 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADG 51 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTT
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCH
Confidence 358999999999 99999999999999999999998875 88999999874
No 191
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.27 E-value=1.9e-11 Score=72.01 Aligned_cols=54 Identities=7% Similarity=0.071 Sum_probs=45.7
Q ss_pred CCccEEEEcCCCC-----CCCHHHHHHHhccCCCeeEEEEeecCCC-CCcccEEEEEecc
Q psy17949 40 TTWTKLFVGGLPY-----HTTDKSLREHFSVFGDIEEAVVITDRQT-GKSRGYGFVSPSF 93 (96)
Q Consensus 40 ~~~~~l~v~~l~~-----~~~~~~l~~~F~~~G~i~~~~~~~d~~t-g~~~G~~fV~f~s 93 (96)
...+.|++.|+.. +-++++|++.|++||.|.++.+++|+.+ ++++|||||+|++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~ 65 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFER 65 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESS
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECC
Confidence 3567899999962 2378999999999999999999998764 6899999999986
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.26 E-value=6.3e-12 Score=83.78 Aligned_cols=49 Identities=29% Similarity=0.489 Sum_probs=44.6
Q ss_pred CCCccEEEEcCCCCCC---------CHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 39 DTTWTKLFVGGLPYHT---------TDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~---------~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
....++||||||+.++ ++++|+++|++||.|.+|+++. +||||||+|.+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~ 188 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKY 188 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCC
Confidence 4568899999999998 7999999999999999999985 48999999986
No 193
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.21 E-value=1.5e-11 Score=85.66 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=43.0
Q ss_pred CCCCccEEEEcC--CCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 38 KDTTWTKLFVGG--LPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 38 ~~~~~~~l~v~~--l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.+....+||||| |++.+++++|+++|++||.|.++.+.. +||||||+|++
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~ 65 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRT 65 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESS
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECC
Confidence 345678999999 588999999999999999999987643 47999999976
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.16 E-value=5.5e-11 Score=73.92 Aligned_cols=47 Identities=17% Similarity=0.506 Sum_probs=41.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVF----G-------DIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~----G-------~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
+.++|||+|||+++++++|+++|++| | .|.++.+ ++++|||||+|.+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~ 60 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRS 60 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESS
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCC
Confidence 56899999999999999999999999 6 6777765 3458999999986
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.16 E-value=4.7e-11 Score=75.74 Aligned_cols=48 Identities=17% Similarity=0.473 Sum_probs=40.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVF----G-------DIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~----G-------~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
..++|||+|||+++++++|+++|.+| | .|.++.+ ++++|||||+|.+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~ 61 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSV 61 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCS
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCH
Confidence 46899999999999999999999999 4 5555544 56789999999874
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.16 E-value=1.7e-10 Score=73.49 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=44.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFG-DIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G-~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||.++++++|+++|.+|| .|.+++++.+. +|||||+|++.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~ 168 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSV 168 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCH
Confidence 4578999999999999999999999999 99999987642 79999999873
No 197
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.2e-10 Score=66.29 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 52 YHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 52 ~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.++++++|+++|++||.|.+|.++ ++++|||||+|++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~ 63 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFAT 63 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECC
Confidence 468999999999999999999987 4789999999986
No 198
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=67.54 Aligned_cols=42 Identities=26% Similarity=0.257 Sum_probs=36.1
Q ss_pred ccE-EEEcCCCCCCCHHH----HHHHhccC-CCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 42 WTK-LFVGGLPYHTTDKS----LREHFSVF-GDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 42 ~~~-l~v~~l~~~~~~~~----l~~~F~~~-G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
..+ |||+|||+++++++ |+++|.+| |+|.+| || |+|||.|.+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~ 55 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFIN 55 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECC
Confidence 344 99999999999988 55899999 599998 44 999999986
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.10 E-value=3.9e-10 Score=73.77 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=44.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFG-DIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G-~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
...++|||+|||+++++++|+++|.+|| .|.+++++.+ .+|||||+|++.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~ 199 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSV 199 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSH
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCH
Confidence 3468999999999999999999999999 9999998653 378999999874
No 200
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=1.1e-09 Score=64.68 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=42.0
Q ss_pred CCCCccEEEEcCCCCCCC-----------HHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTT-----------DKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~-----------~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
.....+.|+|.||..... +++|+++|.+||.|.++.+ .|+ .++|||||+|.+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~ 74 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDP 74 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCH
Confidence 345678999999944332 5899999999999999965 554 3899999999863
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.00 E-value=5.3e-11 Score=69.89 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=38.7
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 47 VGGLPYHTTDKSLREHF------------SVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 47 v~~l~~~~~~~~l~~~F------------~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
+.+|++.+++++|++.| ++||.|.++.+++++ +++++|||||+|++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~ 77 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRR 77 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECC
Confidence 45677777887777666 999999999999986 58999999999986
No 202
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.1e-09 Score=66.05 Aligned_cols=50 Identities=18% Similarity=0.102 Sum_probs=45.4
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 38 KDTTWTKLFVGGLPYH-TTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~-~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.-..++.|||+||+.+ +++++|+++|.+||.|..|.++++.. .|||.|.+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~ 64 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKE 64 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECC
Confidence 3457899999999999 99999999999999999999988865 49999987
No 203
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.91 E-value=2e-09 Score=63.25 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=43.2
Q ss_pred CccEEEEcCC--CCCCC--------HHHHHHHhccCCCeeEEEEeecCCC--CCcccEEEEEecc
Q psy17949 41 TWTKLFVGGL--PYHTT--------DKSLREHFSVFGDIEEAVVITDRQT--GKSRGYGFVSPSF 93 (96)
Q Consensus 41 ~~~~l~v~~l--~~~~~--------~~~l~~~F~~~G~i~~~~~~~d~~t--g~~~G~~fV~f~s 93 (96)
..+.|.+.|+ +.++. +++|++.|++||.|.++.+++++.+ ++++||+||+|++
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTS 68 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESS
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECC
Confidence 4567888887 33333 3789999999999999999998765 4789999999986
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.88 E-value=3.1e-09 Score=63.73 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=43.9
Q ss_pred CccEEEEcCCCC--C---CCHHHHHHHhccCCCeeEEEEeecCC----CCCcccEEEEEecc
Q psy17949 41 TWTKLFVGGLPY--H---TTDKSLREHFSVFGDIEEAVVITDRQ----TGKSRGYGFVSPSF 93 (96)
Q Consensus 41 ~~~~l~v~~l~~--~---~~~~~l~~~F~~~G~i~~~~~~~d~~----tg~~~G~~fV~f~s 93 (96)
..+.|++.|+-. + --+++|++.|++||.|.++.+++|+. +++++||+||+|++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~ 80 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSI 80 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECC
Confidence 467899999832 2 23689999999999999999999865 46789999999986
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.40 E-value=2.2e-07 Score=55.24 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=36.4
Q ss_pred ccEEEEcCCCCCC----------CHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 42 WTKLFVGGLPYHT----------TDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 42 ~~~l~v~~l~~~~----------~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.+.|.+.|+=..- -+++|++.|++||.|.++.+.++. ++||+||+|++
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~ 64 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPS 64 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSS
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECC
Confidence 4566777663211 236889999999999999987653 59999999986
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.06 E-value=5.3e-06 Score=53.75 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=34.7
Q ss_pred CCHHHHHHHhccCCCeeEEEEeecC----CCCCcccEEEEEeccC
Q psy17949 54 TTDKSLREHFSVFGDIEEAVVITDR----QTGKSRGYGFVSPSFY 94 (96)
Q Consensus 54 ~~~~~l~~~F~~~G~i~~~~~~~d~----~tg~~~G~~fV~f~s~ 94 (96)
-.+++|++.|.+||.|.++.++++. .+++++|++||+|++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~ 185 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA 185 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCH
Confidence 3568999999999999999998654 4559999999999863
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.76 E-value=7.1e-05 Score=42.78 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=35.9
Q ss_pred CCccEEEEcCCC----CCCCH----HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 40 TTWTKLFVGGLP----YHTTD----KSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 40 ~~~~~l~v~~l~----~~~~~----~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
....+|+|.-++ ..... .+|.+.|.+||.|..++++.|+ +||+|.+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d 58 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLE 58 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESS
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECC
Confidence 355678888766 23333 7789999999999999999874 8999976
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.34 E-value=0.00026 Score=40.69 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=37.3
Q ss_pred CCCccEEEEcCCCCC------CCH---HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 39 DTTWTKLFVGGLPYH------TTD---KSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~------~~~---~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.....+|+|.-++.+ ..+ .+|.+.|.+||.|..++++.|+ +||+|.+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d 67 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFAD 67 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSC
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcC
Confidence 345678999987643 221 5689999999999999999985 9999976
No 209
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.18 E-value=0.0023 Score=36.93 Aligned_cols=45 Identities=33% Similarity=0.367 Sum_probs=36.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
...+-+++ +.|..+...||.++|.+||.| .|+++-|- -|||.|.+
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~ 58 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQ 58 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSC
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecC
Confidence 34566777 899999999999999999955 78888775 68888764
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.90 E-value=0.005 Score=35.01 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=40.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCc--ccEEEEEeccC
Q psy17949 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKS--RGYGFVSPSFY 94 (96)
Q Consensus 43 ~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~--~G~~fV~f~s~ 94 (96)
++|-|++||+.+||+++.+.+.....+.....+..+.+.+. .+-|||.|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~ 55 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQ 55 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSS
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCH
Confidence 57889999999999999999999988877777655544332 34588888763
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0059 Score=36.08 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=44.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccC-----CCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVF-----GDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 38 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~-----G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+.+..++|-+-|||..++++.++.+.+++ |.+..+.+.-|. |-|+|+|+|.
T Consensus 17 ~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~ 72 (117)
T 2l9w_A 17 SKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDS 72 (117)
T ss_dssp TTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCH
T ss_pred CccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccc
Confidence 34567889999999999999999999999 999999998874 4799999874
No 212
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.43 E-value=0.01 Score=34.33 Aligned_cols=43 Identities=33% Similarity=0.333 Sum_probs=35.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 42 ~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.+-+++ +.|..+...||.++|.+||. -.|+++-|- -|||.|.+
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~ 48 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQ 48 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEE
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecC
Confidence 345666 89999999999999999994 488888875 68888764
No 213
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.11 E-value=0.0049 Score=44.47 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=36.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 40 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
+..++|+|. ++...++.+|.+.|.+||.|.++.+-.+ .| -|+.|+|++
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~ 98 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQ 98 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC-
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCC
Confidence 346799998 8999999999999999999999876443 23 599999986
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.42 E-value=0.14 Score=29.69 Aligned_cols=46 Identities=20% Similarity=0.043 Sum_probs=36.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcc-----CCCeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSV-----FGDIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~-----~G~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
-.++|.|.|||.++.++.|+-.|+. -|.|.+++... +-|+|+|.+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~ 57 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREP 57 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcCh
Confidence 4678999999999999999999976 36788876522 4689999864
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.67 E-value=0.023 Score=32.67 Aligned_cols=53 Identities=9% Similarity=0.034 Sum_probs=34.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCc--ccEEEEEecc
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKS--RGYGFVSPSF 93 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~--~G~~fV~f~s 93 (96)
..-+|-|+.||+.+||+++.+.+.+.-.+.....+..+.+-+. -.-|||.|.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~ 62 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRN 62 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCC
Confidence 4568999999999999999999887655433222222222211 1346777765
No 216
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.46 E-value=2.3 Score=30.83 Aligned_cols=44 Identities=34% Similarity=0.375 Sum_probs=34.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 41 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
.+..++|+ .+..+...+|.++|+.||.+ +|+++.|. .|||.|.+
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~ 482 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQ 482 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSC
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECC
Confidence 45677777 88888899999999999965 77776664 68888764
No 217
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=86.89 E-value=0.19 Score=28.79 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=0.0
Q ss_pred CCCccEEEEcCCCCCCCHHH
Q psy17949 39 DTTWTKLFVGGLPYHTTDKS 58 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~ 58 (96)
.....+|||+|||+++|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 34556899999999999864
No 218
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=83.17 E-value=4.5 Score=23.85 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=35.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 39 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
....+.|-|-+.|+.. ...+...|.+||.|.+.... ....+-.|.|++
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s 68 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQS 68 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESS
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCC
Confidence 4457788899999985 67788899999999987751 123467777765
No 219
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=72.46 E-value=0.8 Score=27.94 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=16.3
Q ss_pred HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEec
Q psy17949 57 KSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92 (96)
Q Consensus 57 ~~l~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~ 92 (96)
+++.++|...|.|+... ..||||||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn--------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--------TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--------CCCCeeEEeeC
Confidence 45667777777665442 23889999865
No 220
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=66.46 E-value=10 Score=21.07 Aligned_cols=27 Identities=4% Similarity=0.042 Sum_probs=21.2
Q ss_pred CeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 68 DIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 68 ~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+|+++++-.-...|+-++||-|+|++.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd~ 31 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA 31 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE
Confidence 577887765555789999999999874
No 221
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=64.67 E-value=13 Score=22.97 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=28.0
Q ss_pred CCHHHHHHHhccCCCe---eEEEEeecCCCCCcccEEEE
Q psy17949 54 TTDKSLREHFSVFGDI---EEAVVITDRQTGKSRGYGFV 89 (96)
Q Consensus 54 ~~~~~l~~~F~~~G~i---~~~~~~~d~~tg~~~G~~fV 89 (96)
.++++|+++=.+.|.+ .+..+..|..+|+.+.|||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 5889999999999977 34556666448999988874
No 222
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.14 E-value=7 Score=22.46 Aligned_cols=36 Identities=6% Similarity=-0.020 Sum_probs=27.4
Q ss_pred CccEEEEcCCCCCC-C----HHHHHHHhccCCCeeEEEEee
Q psy17949 41 TWTKLFVGGLPYHT-T----DKSLREHFSVFGDIEEAVVIT 76 (96)
Q Consensus 41 ~~~~l~v~~l~~~~-~----~~~l~~~F~~~G~i~~~~~~~ 76 (96)
-+.+|++-||+.++ . .+.++++|..|+.+....+.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk 44 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK 44 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC
Confidence 46789999998866 2 257789999999887765544
No 223
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=60.79 E-value=14 Score=21.02 Aligned_cols=27 Identities=7% Similarity=0.165 Sum_probs=20.9
Q ss_pred CeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 68 DIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 68 ~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+|+++++-.-...|+-++||-|+|++.
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd~ 31 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDHE 31 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE
Confidence 577777755545689999999999874
No 224
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=60.56 E-value=14 Score=21.17 Aligned_cols=27 Identities=4% Similarity=0.042 Sum_probs=20.8
Q ss_pred CeeEEEEeecCCCCCcccEEEEEeccC
Q psy17949 68 DIEEAVVITDRQTGKSRGYGFVSPSFY 94 (96)
Q Consensus 68 ~i~~~~~~~d~~tg~~~G~~fV~f~s~ 94 (96)
+|+++++-.-...|+-++||-|+|++.
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd~ 31 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA 31 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETTT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECCE
Confidence 477777755555789999999999873
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=57.99 E-value=29 Score=21.71 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=32.3
Q ss_pred cEEEEcCCCC-C--------CCHHHHHHHh--ccCCCeeEEEEeecCCCCCcccEEEEEecc
Q psy17949 43 TKLFVGGLPY-H--------TTDKSLREHF--SVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 43 ~~l~v~~l~~-~--------~~~~~l~~~F--~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
...-|.|++. . .....|++.| ..|..++ ++...++ .-+.|++.|.|++
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecC
Confidence 3445556665 1 2447889877 8898875 5555553 3589999999985
No 226
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=50.95 E-value=9.7 Score=25.18 Aligned_cols=35 Identities=23% Similarity=0.483 Sum_probs=29.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecC
Q psy17949 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDR 78 (96)
Q Consensus 43 ~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~ 78 (96)
.-+.|+|+|+.++..-|..++.. ..+....++..+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Qk 145 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQK 145 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEEH
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEeee
Confidence 45789999999999999999977 778888777654
No 227
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=45.71 E-value=9 Score=16.39 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHhccCCCee
Q psy17949 49 GLPYHTTDKSLREHFSVFGDIE 70 (96)
Q Consensus 49 ~l~~~~~~~~l~~~F~~~G~i~ 70 (96)
|.|+++.-..-.+.|.+||.+.
T Consensus 2 naPFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC
T ss_pred CCceeEeeEecHHHHHHHhHHh
Confidence 5677777777778888998763
No 228
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=44.71 E-value=4.5 Score=26.90 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecC
Q psy17949 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDR 78 (96)
Q Consensus 43 ~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~ 78 (96)
.-..|+|||+.++..-|..++.....+....++.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Qk 150 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQN 150 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEH
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEeeH
Confidence 457899999999999999999876678888777654
No 229
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=40.08 E-value=12 Score=19.67 Aligned_cols=10 Identities=40% Similarity=1.115 Sum_probs=7.8
Q ss_pred cccEEEEEec
Q psy17949 83 SRGYGFVSPS 92 (96)
Q Consensus 83 ~~G~~fV~f~ 92 (96)
.||||||+-+
T Consensus 12 ~kGfGFI~~~ 21 (73)
T 3a0j_A 12 EKGYGFIERE 21 (73)
T ss_dssp TTTEEEEECT
T ss_pred CCCEEEEecC
Confidence 3899999754
No 230
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=39.52 E-value=4.1 Score=26.69 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=28.6
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecC
Q psy17949 45 LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDR 78 (96)
Q Consensus 45 l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~ 78 (96)
..|+|+|+.++.+.|..++.....+....++.++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Qk 132 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQK 132 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEEH
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEeH
Confidence 3799999999999999999877778888777654
No 231
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=39.45 E-value=37 Score=17.55 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=17.1
Q ss_pred eEEEEeecCCCCCcccEEEEEecc
Q psy17949 70 EEAVVITDRQTGKSRGYGFVSPSF 93 (96)
Q Consensus 70 ~~~~~~~d~~tg~~~G~~fV~f~s 93 (96)
+.++++.++ ...+.|++.|.|+|
T Consensus 20 R~arlllnr-Rps~~G~~wiKyED 42 (62)
T 1igq_A 20 RPARLILNR-RPPAEGYAWLKYED 42 (62)
T ss_dssp EEEEECTTB-CCSSTTEEEEEETT
T ss_pred hhhhhhhcc-CCCcCceEEEEEec
Confidence 356677764 35578999999987
No 232
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=39.39 E-value=13 Score=20.69 Aligned_cols=9 Identities=44% Similarity=0.973 Sum_probs=7.2
Q ss_pred cccEEEEEe
Q psy17949 83 SRGYGFVSP 91 (96)
Q Consensus 83 ~~G~~fV~f 91 (96)
.|||+||+-
T Consensus 19 ~KGfGFI~~ 27 (90)
T 3ulj_A 19 RMGFGFISM 27 (90)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEeEe
Confidence 489999973
No 233
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=39.13 E-value=13 Score=19.11 Aligned_cols=10 Identities=40% Similarity=1.175 Sum_probs=7.9
Q ss_pred cccEEEEEec
Q psy17949 83 SRGYGFVSPS 92 (96)
Q Consensus 83 ~~G~~fV~f~ 92 (96)
.||||||+-+
T Consensus 11 ~kGfGFI~~~ 20 (66)
T 1g6p_A 11 KKGYGFITKD 20 (66)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEecC
Confidence 3899999854
No 234
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=38.33 E-value=16 Score=19.39 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=8.2
Q ss_pred cccEEEEEecc
Q psy17949 83 SRGYGFVSPSF 93 (96)
Q Consensus 83 ~~G~~fV~f~s 93 (96)
.||||||+=++
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 38999998543
No 235
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=34.76 E-value=20 Score=18.52 Aligned_cols=11 Identities=36% Similarity=1.147 Sum_probs=8.3
Q ss_pred cccEEEEEecc
Q psy17949 83 SRGYGFVSPSF 93 (96)
Q Consensus 83 ~~G~~fV~f~s 93 (96)
.||||||+=++
T Consensus 12 ~kGfGFI~~~~ 22 (67)
T 3cam_A 12 AKGFGFITPDE 22 (67)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 38999998543
No 236
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=34.63 E-value=20 Score=18.36 Aligned_cols=10 Identities=40% Similarity=1.086 Sum_probs=7.7
Q ss_pred cccEEEEEec
Q psy17949 83 SRGYGFVSPS 92 (96)
Q Consensus 83 ~~G~~fV~f~ 92 (96)
.||||||+=+
T Consensus 12 ~kGfGFI~~~ 21 (66)
T 1c9o_A 12 EKGYGFIEVE 21 (66)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEecC
Confidence 3899999754
No 237
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=34.32 E-value=19 Score=21.92 Aligned_cols=10 Identities=40% Similarity=0.982 Sum_probs=8.4
Q ss_pred ccEEEEEecc
Q psy17949 84 RGYGFVSPSF 93 (96)
Q Consensus 84 ~G~~fV~f~s 93 (96)
||||||+-++
T Consensus 74 KGfGFI~~dd 83 (147)
T 3aqq_A 74 KGHGFITPAD 83 (147)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEeccCC
Confidence 8999998764
No 238
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=33.28 E-value=22 Score=18.99 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=8.3
Q ss_pred cccEEEEEecc
Q psy17949 83 SRGYGFVSPSF 93 (96)
Q Consensus 83 ~~G~~fV~f~s 93 (96)
.||||||+=++
T Consensus 19 ~kGfGFI~~~~ 29 (79)
T 1h95_A 19 RNGYGFINRND 29 (79)
T ss_dssp TTTEEEEEEGG
T ss_pred CCCcEEEecCC
Confidence 48999998543
No 239
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}
Probab=32.45 E-value=20 Score=21.15 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=20.6
Q ss_pred HHHhccCCCeeEEEEeecCCCCCcccEEEEEeccCC
Q psy17949 60 REHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFYL 95 (96)
Q Consensus 60 ~~~F~~~G~i~~~~~~~d~~tg~~~G~~fV~f~s~~ 95 (96)
-.+|..+|.---.-+-.|+.||+ .|||.|..|+
T Consensus 60 nn~~~~l~ne~v~lfKydp~s~q---mA~V~i~k~~ 92 (124)
T 2g2q_A 60 GNFAAHLSNYIVSIFKYNPQTKQ---MAFVDINKSL 92 (124)
T ss_dssp HHHHHHGGGGCEEEEEEETTTTE---EEECCCGGGB
T ss_pred HHHHHhhcccEEEEEEEcCCCCc---EEEEehhHee
Confidence 34445555333334566777776 9999998775
No 240
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=31.20 E-value=25 Score=22.83 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=25.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeec
Q psy17949 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITD 77 (96)
Q Consensus 44 ~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d 77 (96)
-+.|+|+|+.++...+..++.....+....++..
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~Q 125 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQ 125 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEEEEe
Confidence 5789999999999988888865445666665544
No 241
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=30.77 E-value=25 Score=18.31 Aligned_cols=11 Identities=45% Similarity=1.153 Sum_probs=8.1
Q ss_pred cccEEEEEecc
Q psy17949 83 SRGYGFVSPSF 93 (96)
Q Consensus 83 ~~G~~fV~f~s 93 (96)
.||||||+-++
T Consensus 16 ~kGfGFI~~~~ 26 (71)
T 3i2z_B 16 SKGFGFITPED 26 (71)
T ss_dssp TTTEEEEEETT
T ss_pred CCCcEEEecCC
Confidence 38899997543
No 242
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=30.06 E-value=15 Score=19.72 Aligned_cols=9 Identities=22% Similarity=0.685 Sum_probs=7.5
Q ss_pred ccEEEEEec
Q psy17949 84 RGYGFVSPS 92 (96)
Q Consensus 84 ~G~~fV~f~ 92 (96)
|||+||+-+
T Consensus 18 KGfGFI~~d 26 (79)
T 2ytv_A 18 DQFGFINYE 26 (79)
T ss_dssp SSEEEESCC
T ss_pred ccceeEeCC
Confidence 899999765
No 243
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=29.47 E-value=25 Score=22.73 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=27.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecC
Q psy17949 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDR 78 (96)
Q Consensus 43 ~~l~v~~l~~~~~~~~l~~~F~~~G~i~~~~~~~d~ 78 (96)
.-+.|+|+|+.++..-|..++.....+....++..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Qk 131 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQK 131 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEEH
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEEEeH
Confidence 347899999999999999998765556666665543
No 244
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=28.49 E-value=26 Score=19.18 Aligned_cols=10 Identities=20% Similarity=0.674 Sum_probs=7.8
Q ss_pred ccEEEEEecc
Q psy17949 84 RGYGFVSPSF 93 (96)
Q Consensus 84 ~G~~fV~f~s 93 (96)
+|||||+-++
T Consensus 28 kGfGFI~~dd 37 (88)
T 2yty_A 28 DNFGFIETAN 37 (88)
T ss_dssp SSEEEEECSS
T ss_pred CCccEEecCC
Confidence 6999998653
No 245
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=28.17 E-value=20 Score=24.81 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=18.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcc
Q psy17949 43 TKLFVGGLPYHTTDKSLREHFSV 65 (96)
Q Consensus 43 ~~l~v~~l~~~~~~~~l~~~F~~ 65 (96)
.-..|+|||++++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 34789999999999888877763
No 246
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=34.12 E-value=12 Score=19.48 Aligned_cols=11 Identities=18% Similarity=0.721 Sum_probs=8.1
Q ss_pred cccEEEEEecc
Q psy17949 83 SRGYGFVSPSF 93 (96)
Q Consensus 83 ~~G~~fV~f~s 93 (96)
.||||||+=++
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T 2lss_A 15 TKNFGFIEQDN 25 (70)
Confidence 48999997543
No 247
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=28.01 E-value=19 Score=19.89 Aligned_cols=10 Identities=30% Similarity=0.653 Sum_probs=8.2
Q ss_pred ccEEEEEecc
Q psy17949 84 RGYGFVSPSF 93 (96)
Q Consensus 84 ~G~~fV~f~s 93 (96)
||||||+-.+
T Consensus 18 KGfGFI~~~~ 27 (89)
T 1x65_A 18 DGFGFIKCVD 27 (89)
T ss_dssp TTBCEEEESS
T ss_pred CCcceeecCC
Confidence 8999998653
No 248
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=27.39 E-value=28 Score=19.42 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=8.3
Q ss_pred cccEEEEEecc
Q psy17949 83 SRGYGFVSPSF 93 (96)
Q Consensus 83 ~~G~~fV~f~s 93 (96)
.||||||+-++
T Consensus 27 ~KGfGFI~~dd 37 (97)
T 2ytx_A 27 KEAFGFIERGD 37 (97)
T ss_dssp CSSEEEEECSS
T ss_pred eCCceEEecCC
Confidence 47999998543
No 249
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=27.32 E-value=30 Score=18.95 Aligned_cols=10 Identities=40% Similarity=0.670 Sum_probs=7.9
Q ss_pred ccEEEEEecc
Q psy17949 84 RGYGFVSPSF 93 (96)
Q Consensus 84 ~G~~fV~f~s 93 (96)
|||+||+-++
T Consensus 28 KGfGFI~~dd 37 (89)
T 1wfq_A 28 TSYGFIQCSE 37 (89)
T ss_dssp SSEEEEEETT
T ss_pred CCeeEEecCC
Confidence 8999998653
No 250
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=21.72 E-value=31 Score=19.63 Aligned_cols=11 Identities=36% Similarity=0.751 Sum_probs=7.8
Q ss_pred HHHHHHhccCC
Q psy17949 57 KSLREHFSVFG 67 (96)
Q Consensus 57 ~~l~~~F~~~G 67 (96)
..|+++|++||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 45788888887
No 251
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=20.44 E-value=64 Score=14.63 Aligned_cols=17 Identities=29% Similarity=0.210 Sum_probs=13.1
Q ss_pred CCCCCCHHHHHHHhccC
Q psy17949 50 LPYHTTDKSLREHFSVF 66 (96)
Q Consensus 50 l~~~~~~~~l~~~F~~~ 66 (96)
.-.+++.++|+.+|...
T Consensus 18 Y~rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 18 YFIDTDLNQLKEVFSGI 34 (37)
T ss_dssp SSSCCCHHHHHHHHHTC
T ss_pred ccCcCCHHHHHHHHHHc
Confidence 34577899999999763
Done!