Your job contains 1 sequence.
>psy17949
MLMPGALGTAESVLGGADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLR
EHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFYLI
The BLAST search returned 14 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17949
(96 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|E1BZ17 - symbol:RBM24 "RNA-binding protein 24" ... 255 7.0e-22 1
UNIPROTKB|Q5ZMA3 - symbol:RBM24 "RNA-binding protein 24" ... 255 7.0e-22 1
UNIPROTKB|Q6GQD3 - symbol:rbm24-a "RNA-binding protein 24... 255 7.0e-22 1
UNIPROTKB|Q6P8A7 - symbol:rbm24 "RNA-binding protein 24" ... 255 7.0e-22 1
UNIPROTKB|Q9I8B3 - symbol:rbm24-b "RNA-binding protein 24... 255 7.0e-22 1
ZFIN|ZDB-GENE-060312-43 - symbol:rbm24b "RNA binding moti... 255 7.0e-22 1
UNIPROTKB|Q9H0Z9 - symbol:RBM38 "RNA-binding protein 38" ... 254 9.0e-22 1
MGI|MGI:3610364 - symbol:Rbm24 "RNA binding motif protein... 254 9.0e-22 1
MGI|MGI:1889294 - symbol:Rbm38 "RNA binding motif protein... 254 9.0e-22 1
RGD|1308503 - symbol:Rbm38 "RNA binding motif protein 38"... 254 9.0e-22 1
RGD|1584029 - symbol:Rbm24 "RNA binding motif protein 24"... 254 9.0e-22 1
UNIPROTKB|Q5ZJX4 - symbol:RBM38 "RNA-binding protein 38" ... 253 1.1e-21 1
ZFIN|ZDB-GENE-040628-1 - symbol:rbm24a "RNA binding motif... 251 1.9e-21 1
UNIPROTKB|A6QPJ1 - symbol:RBM24 "Uncharacterized protein"... 250 2.4e-21 1
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"... 250 2.4e-21 1
UNIPROTKB|Q9BX46 - symbol:RBM24 "RNA-binding protein 24" ... 250 2.4e-21 1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"... 250 2.4e-21 1
UNIPROTKB|A5GFN8 - symbol:RNPC1 "Uncharacterized protein"... 250 2.4e-21 1
UNIPROTKB|F1RUJ2 - symbol:RBM24 "Uncharacterized protein"... 250 2.4e-21 1
ZFIN|ZDB-GENE-030131-5923 - symbol:rbm38 "RNA binding mot... 250 2.4e-21 1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ... 246 6.3e-21 1
WB|WBGene00006321 - symbol:sup-12 species:6239 "Caenorhab... 222 2.2e-18 1
UNIPROTKB|O45189 - symbol:sup-12 "Protein SUP-12, isoform... 222 2.2e-18 1
UNIPROTKB|E9PSF1 - symbol:RBM38 "RNA-binding protein 38" ... 210 4.1e-17 1
TAIR|locus:2037370 - symbol:AT1G20880 species:3702 "Arabi... 186 1.4e-14 1
UNIPROTKB|E2RM01 - symbol:RBM24 "Uncharacterized protein"... 179 7.9e-14 1
TAIR|locus:2011726 - symbol:AT1G76460 species:3702 "Arabi... 178 1.3e-13 1
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi... 174 2.7e-13 1
TAIR|locus:2032120 - symbol:AT1G78260 species:3702 "Arabi... 171 9.2e-13 1
TAIR|locus:2044370 - symbol:AT2G46780 species:3702 "Arabi... 172 1.3e-12 1
TAIR|locus:2017779 - symbol:AT1G22910 species:3702 "Arabi... 170 2.5e-12 1
TAIR|locus:2196521 - symbol:AT1G22330 species:3702 "Arabi... 166 3.7e-12 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 163 3.9e-12 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 157 1.7e-11 1
TAIR|locus:4515103555 - symbol:AT5G11412 species:3702 "Ar... 157 1.7e-11 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 156 2.2e-11 1
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 150 9.4e-11 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 150 9.4e-11 1
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 154 1.1e-10 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 149 1.2e-10 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 149 1.2e-10 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 149 1.2e-10 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 149 1.2e-10 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 149 1.2e-10 1
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 154 1.4e-10 1
TAIR|locus:2102435 - symbol:ARP1 "ABA-regulated RNA-bindi... 149 2.1e-10 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 152 3.0e-10 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 150 3.3e-10 1
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 150 3.3e-10 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 154 3.7e-10 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 148 4.0e-10 1
UNIPROTKB|D6RAF8 - symbol:HNRNPD "Heterogeneous nuclear r... 128 4.0e-10 2
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 144 4.1e-10 1
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 150 4.3e-10 1
TAIR|locus:2086325 - symbol:AT3G15010 species:3702 "Arabi... 151 4.4e-10 1
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 150 4.9e-10 1
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 150 4.9e-10 1
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 150 4.9e-10 1
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 150 4.9e-10 1
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 150 5.0e-10 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 145 5.8e-10 1
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein... 142 6.6e-10 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 141 8.4e-10 1
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 132 1.0e-09 2
UNIPROTKB|D4A2D2 - symbol:D4A2D2 "Uncharacterized protein... 143 1.1e-09 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 140 1.1e-09 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 140 1.1e-09 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 140 1.1e-09 1
UNIPROTKB|F8W646 - symbol:HNRNPA1 "Heterogeneous nuclear ... 140 1.1e-09 1
UNIPROTKB|J3KQA8 - symbol:HNRNPA1 "Heterogeneous nuclear ... 140 1.1e-09 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 140 1.1e-09 1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi... 140 1.1e-09 1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi... 140 1.1e-09 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 140 1.1e-09 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 140 1.1e-09 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 140 1.1e-09 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 140 1.1e-09 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 140 1.1e-09 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 140 1.1e-09 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 140 1.1e-09 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 140 1.1e-09 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 140 1.1e-09 1
TAIR|locus:2164042 - symbol:AT5G53680 species:3702 "Arabi... 140 1.1e-09 1
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 139 1.4e-09 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 139 1.4e-09 1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi... 139 1.4e-09 1
UNIPROTKB|F1M5L3 - symbol:F1M5L3 "Uncharacterized protein... 145 1.6e-09 1
UNIPROTKB|F1M117 - symbol:F1M117 "Uncharacterized protein... 145 1.6e-09 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 139 1.7e-09 1
UNIPROTKB|F1M2S4 - symbol:F1M2S4 "Uncharacterized protein... 138 1.8e-09 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 138 1.8e-09 1
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 132 2.0e-09 2
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 132 2.0e-09 2
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 139 2.1e-09 1
UNIPROTKB|J3QKT5 - symbol:MSI2 "RNA-binding protein Musas... 137 2.2e-09 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 137 2.2e-09 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 137 2.2e-09 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 137 2.2e-09 1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 140 2.4e-09 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 140 2.5e-09 1
WARNING: Descriptions of 896 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+S QKDTT+TK+FVGGLPYHTTD SLR++F VFG+IEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HSSQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVT 58
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 48/64 (75%), Positives = 54/64 (84%)
Query: 27 LTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
L P + QKDTT+TK+FVGGLPYHTTD SLR++F FGDIEEAVVITDRQTGKSRGY
Sbjct: 18 LAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY 77
Query: 87 GFVS 90
GFV+
Sbjct: 78 GFVT 81
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 48/61 (78%), Positives = 54/61 (88%)
Query: 30 PSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
PS + QKDTT+TK+FVGGLPYHTTD SLR++F FGDIEEAVVITDRQTGKSRGYGFV
Sbjct: 19 PSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 78
Query: 90 S 90
+
Sbjct: 79 T 79
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 48/61 (78%), Positives = 54/61 (88%)
Query: 30 PSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
PS + QKDTT+TK+FVGGLPYHTTD SLR++F FGDIEEAVVITDRQTGKSRGYGFV
Sbjct: 19 PSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 78
Query: 90 S 90
+
Sbjct: 79 T 79
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 47/54 (87%), Positives = 52/54 (96%)
Query: 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
QKDTT+TK+FVGGLPYHTTD SLR++F VFGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVT 58
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 46/57 (80%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFG+IEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVT 58
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 46/57 (80%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFG+IEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVT 58
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 47/61 (77%), Positives = 53/61 (86%)
Query: 30 PSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
P + QKDTT+TK+FVGGLPYHTTD SLR++F FGDIEEAVVITDRQTGKSRGYGFV
Sbjct: 21 PGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 80
Query: 90 S 90
+
Sbjct: 81 T 81
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 46/57 (80%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFG+IEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVT 58
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 47/61 (77%), Positives = 53/61 (86%)
Query: 30 PSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
P + QKDTT+TK+FVGGLPYHTTD SLR++F FGDIEEAVVITDRQTGKSRGYGFV
Sbjct: 21 PGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 80
Query: 90 S 90
+
Sbjct: 81 T 81
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 47/61 (77%), Positives = 53/61 (86%)
Query: 30 PSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
P + QKDTT+TK+FVGGLPYHTTD SLR++F FGDIEEAVVITDRQTGKSRGYGFV
Sbjct: 21 PGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 80
Query: 90 S 90
+
Sbjct: 81 T 81
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 46/57 (80%), Positives = 54/57 (94%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFG+IEEAVVITDRQTGKSRGYGFV+
Sbjct: 20 HTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVT 76
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 50/69 (72%), Positives = 59/69 (85%)
Query: 22 GSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTG 81
G+L T+ PS+ QKDTT+TK+FVGGLPYHTTD SLR++F FGDI+EAVVITDRQTG
Sbjct: 9 GTLETMY-PSI----QKDTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTG 63
Query: 82 KSRGYGFVS 90
KSRGYGFV+
Sbjct: 64 KSRGYGFVT 72
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 46/57 (80%), Positives = 52/57 (91%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+ QKDTT+TK+FVGGLPYHTTD SLR++F FGDIEEAVVITDRQTGKSRGYGFV+
Sbjct: 2 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 58
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 44/66 (66%), Positives = 53/66 (80%)
Query: 25 ATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSR 84
+T P VG+ +DT +TK+FVGGLPYHT+DK+L E+F FGDIEEAVVITDR T KSR
Sbjct: 20 STNAEPVVGS---RDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSR 76
Query: 85 GYGFVS 90
GYGFV+
Sbjct: 77 GYGFVT 82
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 44/66 (66%), Positives = 53/66 (80%)
Query: 25 ATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSR 84
+T P VG+ +DT +TK+FVGGLPYHT+DK+L E+F FGDIEEAVVITDR T KSR
Sbjct: 20 STNAEPVVGS---RDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSR 76
Query: 85 GYGFVS 90
GYGFV+
Sbjct: 77 GYGFVT 82
>UNIPROTKB|E9PSF1 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955 HGNC:HGNC:15818
IPI:IPI00974044 ProteinModelPortal:E9PSF1 SMR:E9PSF1
Ensembl:ENST00000342690 ArrayExpress:E9PSF1 Bgee:E9PSF1
Uniprot:E9PSF1
Length = 77
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 40/55 (72%), Positives = 45/55 (81%)
Query: 27 LTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTG 81
L P + QKDTT+TK+FVGGLPYHTTD SLR++F FGDIEEAVVITDRQTG
Sbjct: 18 LAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG 72
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 24 LATLTTPSVG----NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQ 79
+A + PS G NS DTT+TK+FVGGL + T ++LR HF +GDI EAVVITD+
Sbjct: 1 MAYHSIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKN 60
Query: 80 TGKSRGYGFVS 90
TG+S+GYGFV+
Sbjct: 61 TGRSKGYGFVT 71
>UNIPROTKB|E2RM01 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:AAEX03017572 EMBL:AAEX03017571
Ensembl:ENSCAFT00000015807 Uniprot:E2RM01
Length = 116
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 33/43 (76%), Positives = 40/43 (93%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVIT 76
++ QKDTT+TK+FVGGLPYHTTD SLR++F VFG+IEEAVVIT
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVIT 44
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 178 (67.7 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
NS DTT+TK+FVGGL + T ++LR+HF +G+I EAVVI D+ TG+S+GYGFV+
Sbjct: 15 NSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 33/53 (62%), Positives = 43/53 (81%)
Query: 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+DTT+TK+FVGGL + T SLR +F FGDI EAVVITD+ +G+S+GYGFV+
Sbjct: 2 EDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVT 54
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 171 (65.3 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 31/52 (59%), Positives = 41/52 (78%)
Query: 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
DTT+TK+FVGGL + T +R +F FG+I EAV+ITD+ TGKS+GYGFV+
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVT 64
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 172 (65.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
GN+ DT TK+FVGGL + T ++R +F FG+I EAVVITD+ TG+S+GYGFV+
Sbjct: 12 GNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVT 69
>TAIR|locus:2017779 [details] [associations]
symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
Length = 347
Score = 170 (64.9 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 30/52 (57%), Positives = 44/52 (84%)
Query: 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
DTT+TK+FVGGL + T +++++HF FG+I EAVVITD+ +G+S+GYGFV+
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVT 60
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 166 (63.5 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 31/52 (59%), Positives = 40/52 (76%)
Query: 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
DTT TK+FVGGL + T +R +F FG+I EAV+ITD+ TGKS+GYGFV+
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVT 64
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLF+GGL +HTTD LRE FS +G IEEAVV+ DR T +SRG+GFV
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFV 48
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 29/48 (60%), Positives = 39/48 (81%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+KLFVGGL + T D SL++ F+ FG++ EA VI DR+TG+SRG+GFVS
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVS 82
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 27/56 (48%), Positives = 41/56 (73%)
Query: 35 SQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ DT +TK++VGGLP+ T ++ LR +F FGDI ++ DR+TG+S GYGFV+
Sbjct: 44 NENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVT 99
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 29/48 (60%), Positives = 39/48 (81%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
TKLF+GGL + T D SLR+ F+ FGD+ +A VI DR+TG+SRG+GFV+
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVN 82
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 3 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYS 62
Score = 119 (46.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 101 TVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 150
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL ++T +++L +HFS FG I E VV+ DR+T +SRG+GF++
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFIT 53
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 154 (59.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 30/61 (49%), Positives = 42/61 (68%)
Query: 32 VGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSP 91
VG+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+
Sbjct: 10 VGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 69
Query: 92 S 92
S
Sbjct: 70 S 70
Score = 123 (48.4 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LRE+F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 110 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVT 159
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL ++T +++L +HFS FG I E VV+ DR+T +SRG+GF++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFIT 53
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL ++T +++L +HFS FG I E VV+ DR+T +SRG+GF++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFIT 53
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL ++T +++L +HFS FG I E VV+ DR+T +SRG+GF++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFIT 53
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL ++T +++L +HFS FG I E VV+ DR+T +SRG+GF++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFIT 53
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL ++T +++L +HFS FG I E VV+ DR+T +SRG+GF++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFIT 53
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 154 (59.3 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 34/74 (45%), Positives = 44/74 (59%)
Query: 16 GADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVI 75
G G GS + S Q+D KLFVGGL + TT+K LR+HF +G+IE V
Sbjct: 30 GDAGAAGSTNGSSDNQSAASGQRDDD-RKLFVGGLSWETTEKELRDHFGKYGEIESINVK 88
Query: 76 TDRQTGKSRGYGFV 89
TD QTG+SRG+ F+
Sbjct: 89 TDPQTGRSRGFAFI 102
>TAIR|locus:2102435 [details] [associations]
symbol:ARP1 "ABA-regulated RNA-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0010029
"regulation of seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0005634 EMBL:CP002686 GO:GO:0000166
GO:GO:0009651 GO:GO:0009414 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0010029 EMBL:AL138650 HSSP:P11940 IPI:IPI00531276 PIR:T47636
RefSeq:NP_191037.1 UniGene:At.20812 ProteinModelPortal:Q9M1S3
SMR:Q9M1S3 DNASU:824642 EnsemblPlants:AT3G54770.1 GeneID:824642
KEGG:ath:AT3G54770 TAIR:At3g54770 InParanoid:Q9M1S3 OMA:FYHFHQS
PhylomeDB:Q9M1S3 ProtClustDB:CLSN2685114 Genevestigator:Q9M1S3
Uniprot:Q9M1S3
Length = 261
Score = 149 (57.5 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 27 LTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
+TT + N DT TK+FVGGL + T +++ +HF +GDI EAV+I+D+ T +S+GY
Sbjct: 1 MTTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 60
Query: 87 GFVS 90
GFV+
Sbjct: 61 GFVT 64
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 152 (58.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+
Sbjct: 21 SQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 80
Query: 91 PS 92
S
Sbjct: 81 YS 82
Score = 123 (48.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LRE+F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 122 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVT 171
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 150 (57.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 84
Score = 120 (47.3 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 150 (57.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 3 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 62
Score = 120 (47.3 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 102 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 151
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 154 (59.3 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 30/66 (45%), Positives = 46/66 (69%)
Query: 28 TTPSVGNSQQKDTTWT---KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSR 84
TT VG + + T K+F+GGL + TTD+SL+E+FS FG+++E V+ D TG+SR
Sbjct: 92 TTGPVGEPEPQGTGIKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSR 151
Query: 85 GYGFVS 90
G+GF++
Sbjct: 152 GFGFLT 157
Score = 114 (45.2 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ +Q+ T+ K+FVGG+ T++ ++ F FG + +A ++ D+ TG+ RG+GFV+
Sbjct: 184 AIPRDEQEKTS--KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVT 241
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 148 (57.2 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 58
Score = 123 (48.4 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LRE+F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 98 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVT 147
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 128 (50.1 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
W K+F+GGL + TT K L+++FS FG++ + + D TG+SRG+GFV
Sbjct: 97 W-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143
Score = 85 (35.0 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGK 82
K+FVGGL T ++ +RE+F FG++E + D +T K
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 221
Score = 31 (16.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 5 GALGTAESVLGGADG 19
GA A + +GG+ G
Sbjct: 10 GAAAAATAAVGGSAG 24
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 25/47 (53%), Positives = 37/47 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL ++T +++L +HF FG I E VV+ DR+T +SRG+GF++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFIT 53
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 150 (57.9 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 3 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 62
Score = 120 (47.3 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 102 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 151
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 151 (58.2 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 31/60 (51%), Positives = 41/60 (68%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
SV + D + KLF+ GL TT + LR FS +GD+EEA+VI D+ TGKS+GYGFV+
Sbjct: 63 SVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVT 122
Score = 109 (43.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 32/92 (34%), Positives = 44/92 (47%)
Query: 1 MLMPGALGTAESVLGGADG--LVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKS 58
M + GAL + DG V LA G SQ D + K++V +P+
Sbjct: 124 MHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTG-SQIADISMRKIYVANVPFDMPADR 182
Query: 59 LREHFSVFGDIEEAVVITDRQTGKSRGYG-FV 89
L HF +GD+EE + D+ TGKSRG+ FV
Sbjct: 183 LLNHFMAYGDVEEGPLGFDKVTGKSRGFALFV 214
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 150 (57.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 84
Score = 120 (47.3 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 150 (57.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 84
Score = 120 (47.3 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 150 (57.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 84
Score = 120 (47.3 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 150 (57.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 84
Score = 120 (47.3 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 150 (57.9 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 84
Score = 120 (47.3 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 145 (56.1 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 8 GTAESVLGGADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFG 67
G + LGG +G G+ + SV + KLFVGGL + TT ++LR +FS +G
Sbjct: 23 GGRKERLGGPEGTSGAPSH---SSVSARKAAQAALRKLFVGGLDWSTTQETLRSYFSQYG 79
Query: 68 DIEEAVVITDRQTGKSRGYGFV 89
++ + V++ D+ T +SRG+GFV
Sbjct: 80 EVVDCVIMKDKTTNQSRGFGFV 101
Score = 117 (46.2 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGG+P++ + LRE+F FG + E V+I D + + RG+GF++
Sbjct: 141 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 187
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 27/49 (55%), Positives = 36/49 (73%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KL +GGL + TTD SLREHF +G + + VV+ D QT +SRG+GFV+ S
Sbjct: 9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS 57
Score = 114 (45.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ D Q+GK RG+ FV+
Sbjct: 97 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVT 146
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL Y TT++SL E FS +G I + VI DR+T +SRG+GFV+
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVT 70
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 132 (51.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
W K+F+GGL + TT K L+++FS FGD+ + + D TG+SRG+GFV
Sbjct: 95 W-KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFV 141
Score = 105 (42.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Score = 31 (16.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 5 GALGTAESVLGGADG 19
GA A + +GG+ G
Sbjct: 10 GAAAAATAAVGGSAG 24
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 143 (55.4 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + E VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVT 61
Score = 106 (42.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGG+ T + LR++ +G IE ++TDR +GK RG+ FV+
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVT 147
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+ FVGGL + T D+SL+ FS +GD+ ++ +ITDR+TG+SRG+GFV+
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVT 53
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
Q DTT+TK++VGGLP+ T + L F FG+I V+ DR+T +S+GYGFV+
Sbjct: 6 QNFDTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVT 60
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 57
Score = 107 (42.7 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 31 SVGNSQQKDTTWT-KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
S+ +SQ+ K+FVG + T + LR++F +G E ++TDR +GK RG+ FV
Sbjct: 87 SIEDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFV 146
Query: 90 S 90
+
Sbjct: 147 T 147
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 25/47 (53%), Positives = 37/47 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + TT++SL + FS +G + E VV+ DR++ +SRG+GFV+
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVT 53
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 20 LVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQ 79
+ GS + L++PS+ + T +LFV GL TT++ L++ F+ FG + +A VITDR
Sbjct: 11 VAGSSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRD 70
Query: 80 TGKSRGYGFVS 90
+G+S+G+GFV+
Sbjct: 71 SGRSKGFGFVT 81
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 145 (56.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TTD SLREHF G + + VV+ D QT SRG+GFV+ S
Sbjct: 26 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSS 85
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 145 (56.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TTD SLREHF G + + VV+ D QT SRG+GFV+ S
Sbjct: 26 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSS 85
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 139 (54.0 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 80
Score = 116 (45.9 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 122 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 171
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 54
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVG T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 96 TVKKIFVGE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 142
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVT 52
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 132 (51.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
W K+F+GGL + TT K L+++FS FGD+ + + D TG+SRG+GFV
Sbjct: 95 W-KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFV 141
Score = 105 (42.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Score = 31 (16.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 5 GALGTAESVLGGADG 19
GA A + +GG+ G
Sbjct: 10 GAAAAATAAVGGSAG 24
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 132 (51.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
W K+F+GGL + TT K L+++FS FGD+ + + D TG+SRG+GFV
Sbjct: 95 W-KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFV 141
Score = 105 (42.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Score = 31 (16.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 5 GALGTAESVLGGADG 19
GA A + +GG+ G
Sbjct: 10 GAAAAATAAVGGSAG 24
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 139 (54.0 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 54
Score = 118 (46.6 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 34 NSQQKDTTWT--KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+SQ+ D T K+FVGG+ T + LR++F +G E ++TDR +GK RG+ FV+
Sbjct: 87 DSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVT 145
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 29 TPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGF 88
T N Q D K+F+GGL + T+ SLR++FS FG+I E +V+ D T +SRG+GF
Sbjct: 9 TSGSANDSQHDPG--KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGF 66
Query: 89 VS 90
V+
Sbjct: 67 VT 68
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T +++L + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T +++L + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T +++L + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 140 (54.3 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 140 (54.3 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 142 (55.0 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 35 SQQKDTTWT--KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S Q+ WT KLFVGG+ T + LRE+F +G I+ +ITDRQ+G+ RG+GFV+
Sbjct: 90 SGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVT 147
Score = 124 (48.7 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 24/56 (42%), Positives = 40/56 (71%)
Query: 36 QQKDTTWT-KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
QQK+ KLF+GGL + TT++SLR+++ +G++ + VV+ D + +SRG GFV+
Sbjct: 1 QQKEAEQIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVT 56
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 145 (56.1 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 24/46 (52%), Positives = 38/46 (82%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLF+GG+ + T ++ L+E+FS FG++ EAV++ DR TG++RG+GFV
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFV 52
Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGLP T+ + +F FG + VV+ D T + RG+GF++
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFIT 155
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 128 (50.1 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
W K+F+GGL + TT K L+++FS FG++ + + D TG+SRG+GFV
Sbjct: 97 W-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143
Score = 105 (42.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Score = 31 (16.0 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 5 GALGTAESVLGGADG 19
GA A + +GG+ G
Sbjct: 10 GAAAAATTAVGGSAG 24
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 143 (55.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 32/69 (46%), Positives = 45/69 (65%)
Query: 22 GSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTG 81
GS AT +P N Q D K+F+GGL + T+ SLR++FS FG+I E +V+ D T
Sbjct: 5 GSQATSGSP---NDSQHDPG--KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTK 59
Query: 82 KSRGYGFVS 90
+SRG+GFV+
Sbjct: 60 RSRGFGFVT 68
Score = 120 (47.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 23/57 (40%), Positives = 40/57 (70%)
Query: 35 SQQKDTTWTK-LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+Q K T TK +FVGGL +T + ++++F FG +E+A+++ D+ T + RG+GFV+
Sbjct: 101 AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVT 157
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 140 (54.3 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + L EHFS FG +E+A +I D+Q+GK RG+GFV
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFV 144
Score = 94 (38.1 bits), Expect = 0.00016, P = 0.00016
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 45 LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
+ +G T++ LR HF FG + + VV+ + QT +SR +GFV+ S
Sbjct: 9 VLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYS 56
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 140 (54.3 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 140 (54.3 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 140 (54.3 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 143 (55.4 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 23/46 (50%), Positives = 38/46 (82%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLF+GG+ + T ++ LR++FS +GD+ EAV++ DR TG++RG+GF+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFI 52
Score = 115 (45.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGLP T++ + +F FG I + VV+ D T + RG+GF++
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 157
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 140 (54.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 140 (54.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 140 (54.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 140 (54.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 140 (54.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 140 (54.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 140 (54.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 140 (54.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 142 (55.0 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 39 DTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
D+ KLFVGG+ + T + LREHF+ +G++ +A+V+ D+ TG+ RG+GFV
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFV 52
Score = 131 (51.2 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 19 GLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDR 78
G G+L T + S G++ K K+FVGGLP TD+ R++F V+G + + ++ D+
Sbjct: 90 GRTGNLNT-SRSSGGDAYNKTK---KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQ 145
Query: 79 QTGKSRGYGFVS 90
T + RG+GFVS
Sbjct: 146 ATNRPRGFGFVS 157
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 140 (54.3 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KL VGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KL VGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KL VGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 24/48 (50%), Positives = 37/48 (77%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+K+F+GGL + T+ SLR++FS FG+I E +V+ D T +SRG+GFV+
Sbjct: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 64
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 139 (54.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
K+FVGGL D+ L+++FS FG IE+A VITD+ TGK RG+GFV
Sbjct: 98 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFV 143
Score = 118 (46.6 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLFVGGL TTD+ LR HF +G + + VV+ ++ +SR +GFV+ S
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYS 55
>RGD|1563684 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=ISO]
[GO:0017091 "AU-rich element binding" evidence=ISO] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0032496 "response to
lipopolysaccharide" evidence=ISO] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
REFSEQ:XM_003752953 Ncbi:XP_003753001
Length = 226
Score = 135 (52.6 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + L EHFS FG +E+A +I D+Q+GK RG+GFV
Sbjct: 18 KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFV 63
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 139 (54.0 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 27/65 (41%), Positives = 48/65 (73%)
Query: 26 TLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
+L++PS+ + + ++ +KLF+GG+ Y + SLRE F+ +G++ + VI DR+TG+SRG
Sbjct: 24 SLSSPSLFQAIRCMSS-SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRG 82
Query: 86 YGFVS 90
+GFV+
Sbjct: 83 FGFVT 87
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 138 (53.6 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 24/48 (50%), Positives = 37/48 (77%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+K+FVGG+ Y T + LRE FS +G++ +A +I DR+TG+SRG+ FV+
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVT 81
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 139 (54.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 140 (54.3 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 28 TTPS-VGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
T P G +Q KD K+FVGG+P T+ L++ F+ +G++ E VI D +T +SRG+
Sbjct: 93 TIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGF 152
Query: 87 GFV 89
GFV
Sbjct: 153 GFV 155
Score = 124 (48.7 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+F+GGL TT+ +HF +G+I ++V++ DR TG+ RG+GF++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFIT 66
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 128 (50.1 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
W K+F+GGL + TT K L+++FS FG++ + + D TG+SRG+GFV
Sbjct: 97 W-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143
Score = 105 (42.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Score = 31 (16.0 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 5 GALGTAESVLGGADG 19
GA A + +GG+ G
Sbjct: 10 GAAAAATTAVGGSAG 24
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 128 (50.1 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
W K+F+GGL + TT K L+++FS FG++ + + D TG+SRG+GFV
Sbjct: 97 W-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143
Score = 105 (42.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Score = 31 (16.0 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 5 GALGTAESVLGGADG 19
GA A + +GG+ G
Sbjct: 10 GAAAAATAAVGGSAG 24
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 128 (50.1 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
W K+F+GGL + TT K L+++FS FG++ + + D TG+SRG+GFV
Sbjct: 97 W-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143
Score = 105 (42.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Score = 31 (16.0 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 5 GALGTAESVLGGADG 19
GA A + +GG+ G
Sbjct: 10 GAAAAATAAVGGSAG 24
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 128 (50.1 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
W K+F+GGL + TT K L+++FS FG++ + + D TG+SRG+GFV
Sbjct: 97 W-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143
Score = 105 (42.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Score = 31 (16.0 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 5 GALGTAESVLGGADG 19
GA A + +GG+ G
Sbjct: 10 GAAAAATAAVGGSAG 24
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 140 (54.3 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL Y TTD++L+ HF +G+I + VV+ D +T +SRG+GF++ S
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYS 80
Score = 113 (44.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+S T KLFVG L ++S+R++F FG+I + ++ D++TGK RG+ FV
Sbjct: 113 DSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFV 168
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 140 (54.3 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 140 (54.3 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 140 (54.3 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 116 (45.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
G+ ++ KLF+GGL + TTD SLREHF + + + VV+ D QT +SRG+GFV
Sbjct: 3 GHDPKEPEQRRKLFIGGLSFETTDDSLREHFK-WDTLTDCVVMRDPQTERSRGFGFV 58
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGG+ T + +LR++F +G+I+ V+ DRQ+GK RG+ F++
Sbjct: 103 KIFVGGIKEDTEEYNLRDYFE-YGNIKTIEVVEDRQSGKKRGFAFLT 148
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TD SLREHF +G + + VV+ D QT +SR + FV+ S
Sbjct: 3 GHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYS 62
Score = 89 (36.4 bits), Expect = 0.00061, P = 0.00061
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSR 84
T K+FVGG+ T + +LR++F +G I+ V+ DR +GK R
Sbjct: 102 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLSGKER 145
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 45 LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
LF+GGL ++T +++L +HFS FG I E VV+ DR+T +SRG+ F++
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFIT 53
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 45 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 101
Query: 87 GFVSPSFY 94
GFVS FY
Sbjct: 102 GFVS--FY 107
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 24/47 (51%), Positives = 37/47 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL ++T +++L +HFS FG I E VV+ D +T +S+G+GF++
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFIT 53
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + T ++ L FS +G I+E VV+ DR+T +SRG+GFV+
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVT 53
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 134 (52.2 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + TT ++LR +FS +G++ + V++ D+ T +SRG+GFV
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56
Score = 117 (46.2 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGG+P++ + LRE+F FG + E V+I D + + RG+GF++
Sbjct: 92 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 138
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 45 LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
L +GGL + TTD SLREH +G + + VV+TD QT SRG+GFV+ S
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYS 48
Score = 120 (47.3 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 88 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 137
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 17 ADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVIT 76
A L+ L+T T S ++ +T L+VG LPY + ++E F+ FG++ ++
Sbjct: 38 ATALICKLSTHPTLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMK 97
Query: 77 DRQTGKSRGYGFV 89
D++TGK RG+GFV
Sbjct: 98 DKRTGKRRGFGFV 110
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 17 ADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVIT 76
A L+ L+T T S ++ +T L+VG LPY + ++E F+ FG++ ++
Sbjct: 38 ATALICKLSTHPTLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMK 97
Query: 77 DRQTGKSRGYGFV 89
D++TGK RG+GFV
Sbjct: 98 DKRTGKRRGFGFV 110
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+ FVGGL + T D+ L+ FS FGD+ ++ +I DR++G+SRG+GFV+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVT 53
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 139 (54.0 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 82
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 124 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 173
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 139 (54.0 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS-FYLI 96
KLF+GGL Y TTD L+ HF +G+I + VV+ D +T +SRG+GF++ S Y+I
Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMI 78
Score = 115 (45.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+S T KLFVGGL ++ LRE+F FG I +++D+ TGK RG+ F+
Sbjct: 106 DSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 135 (52.6 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 22 KLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 68
Score = 102 (41.0 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++ +G IE ++TDR +GK G+ FV+
Sbjct: 106 TVKKIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVT 155
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 139 (54.0 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 26/49 (53%), Positives = 36/49 (73%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV+ S
Sbjct: 39 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYS 87
Score = 115 (45.5 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+T K+FVGG+ T ++ LRE+F FG I+E ++T++ + K RG+ F++
Sbjct: 126 STVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFIT 176
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 137 (53.3 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 29 TPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGF 88
T N Q D K+F+GGL + T+ SLR++FS FG+I E +V+ D T +SRG+GF
Sbjct: 9 TSGSANDSQHDPG--KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGF 66
Query: 89 VS 90
V+
Sbjct: 67 VT 68
Score = 120 (47.3 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 23/57 (40%), Positives = 40/57 (70%)
Query: 35 SQQKDTTWTK-LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+Q K T TK +FVGGL +T + ++++F FG +E+A+++ D+ T + RG+GFV+
Sbjct: 101 AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVT 157
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 8 GTAESVLGGADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFG 67
GTA GG +G GS + + ++D K+F+GGL + TT K L+++FS FG
Sbjct: 50 GTAS---GGTEG--GSAESEGAKIDASKNEEDEG--KMFIGGLSWDTTKKDLKDYFSKFG 102
Query: 68 DIEEAVVITDRQTGKSRGYGFV 89
++ + + D TG+SRG+GFV
Sbjct: 103 EVVDCTLKLDPITGRSRGFGFV 124
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 136 (52.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + L EHFS FG +E+A +I D+Q+GK RG+GFV
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 144
Score = 121 (47.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL T++ LR HF FG + + VV+ + QT +SR +GFV+ S
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYS 56
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + L EHFS FG +E+A +I D+Q+GK RG+GFV
Sbjct: 104 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 149
Score = 122 (48.0 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
+ +++ KLF+GGL T++ LR HF FG + + VV+ + QT +SR +GFV+ S
Sbjct: 5 EMENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYS 61
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + L EHFS FG +E+A +I D+Q+GK RG+GFV
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 144
Score = 121 (47.7 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL T++ LR HF FG + + VV+ + QT +SR +GFV+ S
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYS 56
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 29 TPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGF 88
T N Q D K+F+GGL + T+ SLR++FS FG+I E +V+ D T +SRG+GF
Sbjct: 9 TSGSANDSQHDPG--KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGF 66
Query: 89 VS 90
V+
Sbjct: 67 VT 68
Score = 120 (47.3 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 23/57 (40%), Positives = 40/57 (70%)
Query: 35 SQQKDTTWTK-LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+Q K T TK +FVGGL +T + ++++F FG +E+A+++ D+ T + RG+GFV+
Sbjct: 101 AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVT 157
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + L EHFS FG +E+A +I D+Q+GK RG+GFV
Sbjct: 104 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 149
Score = 122 (48.0 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
+ +++ KLF+GGL T++ LR HF FG + + VV+ + QT +SR +GFV+ S
Sbjct: 5 EMENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYS 61
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 11 ESVLGGADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIE 70
++ +GG++ GS +TPS+ D KLFVGGL + T+ L+E+F++FG +
Sbjct: 173 QAAMGGSNKS-GSSGR-STPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVT 230
Query: 71 EAVVITDRQTGKSRGYGFVS 90
+ +++ D T +SRG+GF++
Sbjct: 231 DVLIMKDPVTQRSRGFGFIT 250
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 29 TPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGF 88
TP +Q + T K+FVGG+ T+ + ++ +FS FG +EE V++ D+QT + RG+GF
Sbjct: 279 TPK-NRPRQANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGF 336
Query: 89 VS 90
V+
Sbjct: 337 VT 338
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 29/71 (40%), Positives = 39/71 (54%)
Query: 20 LVGSLATLTTPSVG-NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDR 78
L GS +T T S N+ D L+VG LPY + S+RE FS G + ++ D+
Sbjct: 47 LTGSPSTNTASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDK 106
Query: 79 QTGKSRGYGFV 89
TGK RG+GFV
Sbjct: 107 HTGKRRGFGFV 117
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 29/71 (40%), Positives = 39/71 (54%)
Query: 20 LVGSLATLTTPSVG-NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDR 78
L GS +T T S N+ D L+VG LPY + S+RE FS G + ++ D+
Sbjct: 47 LTGSPSTNTASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDK 106
Query: 79 QTGKSRGYGFV 89
TGK RG+GFV
Sbjct: 107 HTGKRRGFGFV 117
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 22/47 (46%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+F+GGL + TT + L+E+F FG+++E +V+ D T +SRG+GFV+
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVT 69
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 135 (52.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + L EHFS FG +E+A +I D+Q+GK RG+GFV
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFV 144
Score = 121 (47.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL T++ LR HF FG + + VV+ + QT +SR +GFV+ S
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYS 56
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 136 (52.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+V + +D T K+FV GLP+ TT ++L F +G+IEE V+ D+ TGK++G+GFV
Sbjct: 92 AVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFV 150
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 138 (53.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 22/46 (47%), Positives = 37/46 (80%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLF+GG+ + T ++ L+E+F +GD+ EAV++ DR TG++RG+GF+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFI 61
Score = 118 (46.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 27 LTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
L +PS G + T K+FVGGLP T+ + +F FG I + VV+ D T + RG+
Sbjct: 107 LISPSHGGNGGGART-KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGF 165
Query: 87 GFVS 90
GF++
Sbjct: 166 GFIT 169
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 134 (52.2 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 8 GTAESVLGGADGLVGSLATLTTPSVG------NSQQKDTTWTKLFVGGLPYHTTDKSLRE 61
GT V GA G GS A G N+ + + K+FVGGL + T+ K L++
Sbjct: 31 GTGTGVAAGAGG--GSAAPQAGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKD 88
Query: 62 HFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+F+ FG++ + + D TG+SRG+GF+
Sbjct: 89 YFTKFGEVVDCTIKMDPNTGRSRGFGFI 116
Score = 106 (42.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 30 PSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
P + +KD K+FVGGL T++ +RE+F FG+IE + D ++ K RG+ F+
Sbjct: 142 PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFI 200
Query: 90 S 90
+
Sbjct: 201 T 201
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 74 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 130
Query: 87 GFVS 90
GFVS
Sbjct: 131 GFVS 134
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 22/47 (46%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+ FVGGL + T D++L F+ +GD+ ++ +I DR+TG+SRG+GFV+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVT 55
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 137 (53.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL + TTD SLR HF +G + + VV+ D T +SRG+GFV+ S
Sbjct: 34 KLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYS 82
Score = 117 (46.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
TT K+FVGG+ T + LR++F FG IE ++ D +TG RG+ FV+
Sbjct: 121 TTVKKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVT 171
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 5 GALGTAESVLGGAD---GLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLRE 61
GA A S GG G G + S+ ++ K+F+GGL + TT K L++
Sbjct: 36 GAAAAAGSGSGGGSAPGGTEGGSTEAEGAKIDASKNEEDEG-KMFIGGLSWDTTKKDLKD 94
Query: 62 HFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+FS FGD+ + + D TG+SRG+GFV
Sbjct: 95 YFSKFGDVVDCTLKLDPITGRSRGFGFV 122
Score = 105 (42.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F++
Sbjct: 162 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 208
Score = 31 (16.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 5 GALGTAESVLGGADG 19
GA A + +GG+ G
Sbjct: 10 GAAAAATAAVGGSAG 24
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 129 (50.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
TKL++GGL T + SL++ FS F + EA V+T++ TG+SRGYGFV+
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVN 78
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 134 (52.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
S S ++ KLF+G L + TTD+SLR HF +G + + VV+ D T +SRG+GFV+
Sbjct: 2 SKSESPKEPEQLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Score = 103 (41.3 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T+ LR++F +G E ++TDR GK RG+ FV+
Sbjct: 103 TVKKIFVGGIK-EDTEHHLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVT 151
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 137 (53.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+F+GGL + TTD SLR++F FG++ + V+ D TG+SRG+GF++
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLT 210
Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
++ +Q+ T K+FVGG+P T++ R F+ FG + +A ++ D+ TG+ RG+GFV+
Sbjct: 237 AIPREEQEKTA--KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVT 294
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 135 (52.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
N+Q D KLFVGGL + TT ++LR +FS +G++ + V++ D+ T +SRG+GFV
Sbjct: 2 NNQGGDEIG-KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56
Score = 114 (45.2 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 19/47 (40%), Positives = 34/47 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGG+P++ + L+E+F+ FG + E V+I D + + RG+GF++
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFIT 161
>UNIPROTKB|E2REM2 [details] [associations]
symbol:E2REM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027720 Uniprot:E2REM2
Length = 207
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + VV+ D T +SRG+GFV+
Sbjct: 15 KLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVT 60
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + T + L + F+ +G I E VV+ DR+T +SRG+GFV+
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVT 52
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 33 GNSQQKDTTWT-----KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYG 87
G + D++W +++VG LPYH + L ++FS FG IE ++ + +TG+S+GY
Sbjct: 29 GKDRLDDSSWKSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYA 88
Query: 88 FVS 90
FV+
Sbjct: 89 FVT 91
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 33 GNSQQKDTTWT-----KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYG 87
G + D++W +++VG LPYH + L ++FS FG IE ++ + +TG+S+GY
Sbjct: 29 GKDRLDDSSWKSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYA 88
Query: 88 FVS 90
FV+
Sbjct: 89 FVT 91
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
T+++VG L TTD LRE FS +G++ +A+V+ DR T +SRG+GFV+ S
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYS 52
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 135 (52.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 24/47 (51%), Positives = 37/47 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+F+GGL + T+ +SLR++F +GDI EA+V+ D T +SRG+GFV+
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVT 76
Score = 122 (48.0 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGGL TT + ++ +F FG IE+A+++ D+QT + RG+GFV+
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVT 165
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 134 (52.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+F+GGL + TT + LRE+F FG+++E +V+ D T +SRG+GFV+
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 47
Score = 123 (48.4 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 23/57 (40%), Positives = 41/57 (71%)
Query: 35 SQQKDTTWTK-LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+Q K T TK +FVGGL +TT + ++++F FG +++A+++ D+ T + RG+GFV+
Sbjct: 80 AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 136
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 37/69 (53%), Positives = 45/69 (65%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGL-PYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
TTPS SQ+KDT+ +FVG L P TTD +R F+ FG I +A V+ D TGKS+G
Sbjct: 102 TTPS---SQKKDTSNHFHVFVGDLSPEITTD-DIRAAFAPFGKISDARVVKDMTTGKSKG 157
Query: 86 YGFVSPSFY 94
YGFVS FY
Sbjct: 158 YGFVS--FY 164
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 133 (51.9 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
K+FVGGL +K L E FS FG IE++ VITD+ TGK RG+GFV
Sbjct: 100 KIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFV 145
Score = 113 (44.8 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLFVGGL TT+ LR +F FG++ + VV+ + Q +SR +GFV+ S
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYS 57
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 134 (52.2 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGG+ T + LRE+F +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 113 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVT 159
Score = 118 (46.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 26 TLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
T+ + V ++++ KLF+GGL TT++SL+ ++ +G++ + VVI + KSRG
Sbjct: 4 TVKSVPVKREKKENEQIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRG 63
Query: 86 YGFVS 90
+GFV+
Sbjct: 64 FGFVT 68
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 135 (52.6 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + TT ++LR +FS +G++ + V++ D+ T +SRG+GFV
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFV 57
Score = 114 (45.2 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 19/47 (40%), Positives = 34/47 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGG+P++ + LR++F+ FG + E V+I D + + RG+GF++
Sbjct: 114 KIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFIT 160
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 133 (51.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 30 PSVGNSQQKDTTWT-KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGF 88
PS N K+ KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GF
Sbjct: 9 PSCLNQSPKELEQLRKLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGF 67
Query: 89 VS 90
V+
Sbjct: 68 VT 69
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 111 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 160
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 134 (52.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL + T D SLREHF G + + VV+ D QT SRG+GFV+ S
Sbjct: 33 KLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYS 81
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 134 (52.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+F+GGL + TT + LRE+F FG+++E +V+ D T +SRG+GFV+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
Score = 123 (48.4 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 23/57 (40%), Positives = 41/57 (71%)
Query: 35 SQQKDTTWTK-LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+Q K T TK +FVGGL +TT + ++++F FG +++A+++ D+ T + RG+GFV+
Sbjct: 100 AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 156
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 134 (52.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+F+GGL + TT + LRE+F FG+++E +V+ D T +SRG+GFV+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
Score = 121 (47.7 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 23/57 (40%), Positives = 40/57 (70%)
Query: 35 SQQKDTTWTK-LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+Q K T TK +FVGGL +TT + ++ +F FG +++A+++ D+ T + RG+GFV+
Sbjct: 100 AQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 156
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 134 (52.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+F+GGL + TT + LRE+F FG+++E +V+ D T +SRG+GFV+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
Score = 121 (47.7 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 23/57 (40%), Positives = 40/57 (70%)
Query: 35 SQQKDTTWTK-LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+Q K T TK +FVGGL +TT + ++ +F FG +++A+++ D+ T + RG+GFV+
Sbjct: 100 AQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 156
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 134 (52.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+F+GGL + TT + LRE+F FG+++E +V+ D T +SRG+GFV+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
Score = 121 (47.7 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 23/57 (40%), Positives = 40/57 (70%)
Query: 35 SQQKDTTWTK-LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+Q K T TK +FVGGL +TT + ++ +F FG +++A+++ D+ T + RG+GFV+
Sbjct: 100 AQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 156
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 134 (52.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+F+GGL + TT + LRE+F FG+++E +V+ D T +SRG+GFV+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
Score = 115 (45.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 35 SQQKDTTWTK-LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+Q K T TK +FVGGL +TT + ++++F F +++A+++ D+ T + RG+GFV+
Sbjct: 100 AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVT 156
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL +++ ++L +H S F I E V++ DR+T +SRG+GF++
Sbjct: 7 KLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFIT 53
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 132 (51.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
G+ ++ KLF+GGL + TTD SLREHF +G + + VV+ D Q SRG+ FV+ S
Sbjct: 27 GHDPKEPEQLRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYS 86
Score = 119 (46.9 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGG+ T + +LR++F +G IE V+ DRQ+GK RG+ FV+
Sbjct: 129 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 175
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 132 (51.5 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 8 GTAESVLGGADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFG 67
GTA G +G G T PS ++D K+FVGGL + T+ K L+++F+ FG
Sbjct: 55 GTAAPPAGNQNGAEGDQIT---PS---KNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFG 106
Query: 68 DIEEAVVITDRQTGKSRGYGFV 89
++ + + D TG+SRG+GF+
Sbjct: 107 EVVDCTIKMDPNTGRSRGFGFI 128
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 132 (51.5 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T KLFVGG+ T + LR++F +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 58 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 107
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 132 (51.5 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 5 GALGTAESVLGGADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFS 64
GA A + G G G A + S+ ++ K+F+GGL + TT K L+++FS
Sbjct: 10 GAAAAATAAASG--GTEGGSAESEGAKIDASKNEEDEG-KMFIGGLSWDTTKKDLKDYFS 66
Query: 65 VFGDIEEAVVITDRQTGKSRGYGFV 89
FG++ + + D TG+SRG+GFV
Sbjct: 67 KFGEVVDCTLKLDPITGRSRGFGFV 91
Score = 105 (42.0 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F++
Sbjct: 131 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 177
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 133 (51.9 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T KLFVGG+ T + LR++F+ +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVT 147
Score = 122 (48.0 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 21/55 (38%), Positives = 39/55 (70%)
Query: 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+++ + KLF+GGL + TT++SLR ++ +G + + VV+ D + +SRG+GFV+
Sbjct: 2 EREKEQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 56
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 134 (52.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + TT ++LR +FS +G++ + V++ D+ T +SRG+GFV
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 46
Score = 117 (46.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGG+P++ + LRE+F FG + E V+I D + + RG+GF++
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 150
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 134 (52.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + TT ++LR +FS +G++ + V++ D+ T +SRG+GFV
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 46
Score = 120 (47.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 28 TTPSVG---NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSR 84
T P G S+ + K+FVGG+P++ + LRE+F FG + E V+I D + + R
Sbjct: 85 TRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPR 144
Query: 85 GYGFVS 90
G+GF++
Sbjct: 145 GFGFIT 150
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 132 (51.5 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T KLFVGG+ T + LR++F +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 109 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 158
Score = 130 (50.8 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 26 TLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
TL T + +++ + KLF+GGL + TT++SLR ++ +G + + VV+ D + +SRG
Sbjct: 3 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 62
Query: 86 YGFVS 90
+GFV+
Sbjct: 63 FGFVT 67
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 134 (52.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + TT ++LR +FS +G++ + V++ D+ T +SRG+GFV
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56
Score = 120 (47.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 28 TTPSVG-NSQQKDTTWT-KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
T P G + D++ + K+FVGG+P++ + LRE+F FG + E V+I D + + RG
Sbjct: 95 TRPKEGWKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRG 154
Query: 86 YGFVS 90
+GF++
Sbjct: 155 FGFIT 159
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 134 (52.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + TT ++LR +FS +G++ + V++ D+ T +SRG+GFV
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56
Score = 118 (46.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 28 TTPSVG--NSQQKDTTWT-KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSR 84
T P G + D++ + K+FVGG+P++ + LRE+F FG + E V+I D + + R
Sbjct: 95 TRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPR 154
Query: 85 GYGFVS 90
G+GF++
Sbjct: 155 GFGFIT 160
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 134 (52.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + TT ++LR +FS +G++ + V++ D+ T +SRG+GFV
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56
Score = 118 (46.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 28 TTPSVG--NSQQKDTTWT-KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSR 84
T P G + D++ + K+FVGG+P++ + LRE+F FG + E V+I D + + R
Sbjct: 95 TRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPR 154
Query: 85 GYGFVS 90
G+GF++
Sbjct: 155 GFGFIT 160
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 134 (52.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + TT ++LR +FS +G++ + V++ D+ T +SRG+GFV
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56
Score = 117 (46.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGG+P++ + LRE+F FG + E V+I D + + RG+GF++
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 160
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 134 (52.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + TT ++LR +FS +G++ + V++ D+ T +SRG+GFV
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56
Score = 117 (46.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGG+P++ + LRE+F FG + E V+I D + + RG+GF++
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 160
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 134 (52.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + TT ++LR +FS +G++ + V++ D+ T +SRG+GFV
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56
Score = 117 (46.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGG+P++ + LRE+F FG + E V+I D + + RG+GF++
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 160
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 133 (51.9 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 5 GALGTAESVLGGADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFS 64
GA G A GADG G + ++D K+FVGGL + T+ K L+++FS
Sbjct: 64 GAQGNA-----GADGTAGDDGADGGQIDASKGEEDAG--KMFVGGLSWDTSKKDLKDYFS 116
Query: 65 VFGDIEEAVVITDRQTGKSRGYGFV 89
FG++ + + D TG+SRG+GF+
Sbjct: 117 KFGEVTDCTIKMDPNTGRSRGFGFI 141
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 30 PSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
P + +K+ K+FVGGL TT++ +RE+F FG+IE + D ++ K RG+ F+
Sbjct: 167 PKKAMAMKKEPV-KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFI 225
Query: 90 S 90
+
Sbjct: 226 T 226
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 133 (51.9 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 101 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 87 GFVSPSFY 94
GFVS FY
Sbjct: 158 GFVS--FY 163
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 133 (51.9 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 101 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 87 GFVSPSFY 94
GFVS FY
Sbjct: 158 GFVS--FY 163
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 133 (51.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 84 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 87 GFVSPSFY 94
GFVS FY
Sbjct: 141 GFVS--FY 146
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 133 (51.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 84 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 87 GFVSPSFY 94
GFVS FY
Sbjct: 141 GFVS--FY 146
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 132 (51.5 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T KLFVGG+ T + LR++F +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 147
Score = 122 (48.0 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 21/55 (38%), Positives = 39/55 (70%)
Query: 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+++ + KLF+GGL + TT++SLR ++ +G + + VV+ D + +SRG+GFV+
Sbjct: 2 EREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 56
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 131 (51.2 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
K+F+GGL + LR+ FS FG +E+A VITD++TGK RG+GFV
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFV 147
Score = 124 (48.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
Q + KLFVGGL TTD LR HF +G + + VV+ ++Q +SR +GFV+ S
Sbjct: 4 QMENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYS 59
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 133 (51.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 100 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 156
Query: 87 GFVSPSFY 94
GFVS FY
Sbjct: 157 GFVS--FY 162
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 133 (51.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 101 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 87 GFVSPSFY 94
GFVS FY
Sbjct: 158 GFVS--FY 163
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 101 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 87 GFVSPSFY 94
GFVS FY
Sbjct: 158 GFVS--FY 163
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 101 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 87 GFVSPSFY 94
GFVS FY
Sbjct: 158 GFVS--FY 163
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 101 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 87 GFVSPSFY 94
GFVS FY
Sbjct: 158 GFVS--FY 163
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 101 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 87 GFVSPSFY 94
GFVS FY
Sbjct: 158 GFVS--FY 163
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 126 (49.4 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
K+F+GGL + TT K L+++FS FG++ + + D TG+SRG+GFV
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 47
Score = 105 (42.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F++
Sbjct: 87 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 133
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 132 (51.5 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T KLFVGG+ T + LR++F +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 106 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 155
Score = 121 (47.7 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 21/47 (44%), Positives = 35/47 (74%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TT++SLR ++ +G + + VV+ D + +SRG+GFV+
Sbjct: 18 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 64
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 132 (51.5 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T KLFVGG+ T + LR++F +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 109 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 158
Score = 130 (50.8 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 26 TLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
TL T + +++ + KLF+GGL + TT++SLR ++ +G + + VV+ D + +SRG
Sbjct: 3 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 62
Query: 86 YGFVS 90
+GFV+
Sbjct: 63 FGFVT 67
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 132 (51.5 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T KLFVGG+ T + LR++F +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159
Score = 130 (50.8 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 26 TLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
TL T + +++ + KLF+GGL + TT++SLR ++ +G + + VV+ D + +SRG
Sbjct: 4 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 63
Query: 86 YGFVS 90
+GFV+
Sbjct: 64 FGFVT 68
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 132 (51.5 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T KLFVGG+ T + LR++F +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159
Score = 130 (50.8 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 26 TLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
TL T + +++ + KLF+GGL + TT++SLR ++ +G + + VV+ D + +SRG
Sbjct: 4 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 63
Query: 86 YGFVS 90
+GFV+
Sbjct: 64 FGFVT 68
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 132 (51.5 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T KLFVGG+ T + LR++F +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159
Score = 130 (50.8 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 26 TLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
TL T + +++ + KLF+GGL + TT++SLR ++ +G + + VV+ D + +SRG
Sbjct: 4 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 63
Query: 86 YGFVS 90
+GFV+
Sbjct: 64 FGFVT 68
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 132 (51.5 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T KLFVGG+ T + LR++F +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159
Score = 130 (50.8 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 26 TLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
TL T + +++ + KLF+GGL + TT++SLR ++ +G + + VV+ D + +SRG
Sbjct: 4 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 63
Query: 86 YGFVS 90
+GFV+
Sbjct: 64 FGFVT 68
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 132 (51.5 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T KLFVGG+ T + LR++F +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159
Score = 130 (50.8 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 26 TLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
TL T + +++ + KLF+GGL + TT++SLR ++ +G + + VV+ D + +SRG
Sbjct: 4 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 63
Query: 86 YGFVS 90
+GFV+
Sbjct: 64 FGFVT 68
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 131 (51.2 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 27 LTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
L++P + ++ + W KLF+GGL + TT++SLR HF +G + VV+ D T +SRG
Sbjct: 1 LSSPK--SPKEPEQLW-KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGV 57
Query: 87 GFV 89
GF+
Sbjct: 58 GFL 60
Score = 104 (41.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK +G+ FV+
Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-KGFAFVT 150
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T +K+FVGGL T + L+E F FG I +AVV+ DR++G SRG+GFV+
Sbjct: 34 TPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVT 83
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
T LFV GL TT + LR F+ FG++ +A V+TDR +G S+G+GFV
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFV 102
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 130 (50.8 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TT++SLR HF +G + + VV+ D T SRG+GFV+
Sbjct: 15 KLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVT 61
Score = 108 (43.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ V+
Sbjct: 100 TVRKIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVT 149
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 131 (51.2 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + L +HFS FG +E+A +I D+Q+GK RG+GFV
Sbjct: 120 KLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFV 165
Score = 128 (50.1 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
KLF+GGL TT+ LREHF+ +G + + VV+ + QT +SR +GFV+ S
Sbjct: 29 KLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYS 77
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 128 (50.1 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
W KLF+ GL + TTD+SLR HF +G + + VV+ D T + RG+GFV+
Sbjct: 7 W-KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVT 54
Score = 106 (42.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
T K+FVG + T + LRE+F +G IE ++TDR +G+ RG+ FV+
Sbjct: 96 TVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVT 145
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 131 (51.2 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGG+ T + LR++F +G I+ +ITDRQ+GK RG+GFV+
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVT 159
Score = 121 (47.7 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 26 TLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
TL + + ++ + + KLF+GGL TT+KSLR ++ +G + + VV+ D +SRG
Sbjct: 4 TLKSVPLKRKKRINEQFHKLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRG 63
Query: 86 YGFVS 90
+GFV+
Sbjct: 64 FGFVT 68
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 129 (50.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 78 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 134
Query: 87 GFVS 90
GFVS
Sbjct: 135 GFVS 138
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 130 (50.8 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
++ + W KLF+ GL + TTD+SLR HF +G + VV+ D T +SRG+GFV
Sbjct: 8 KEPEQLW-KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFV 60
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 129 (50.5 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 28 TTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGY 86
TTPS SQ+KDT+ +FVG L T + ++ F+ FG I +A V+ D TGKS+GY
Sbjct: 82 TTPS---SQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 138
Query: 87 GFVS 90
GFVS
Sbjct: 139 GFVS 142
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 128 (50.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 42 WTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
W K+F+GGL + TT K L+++FS FG++ + + D TG+SRG+GFV
Sbjct: 30 W-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 76
Score = 105 (42.0 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F++
Sbjct: 116 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 162
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 125 (49.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
K+FVGGL + T+ K L+++F+ FG++ + + D TG+SRG+GF+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFI 46
Score = 113 (44.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 8 GTAESVLGGADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFG 67
G+ E VL + + L P + +KD K+FVGGL T++ +RE+F FG
Sbjct: 52 GSVEKVLEQKEHRLDG--RLIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFG 108
Query: 68 DIEEAVVITDRQTGKSRGYGFVS 90
+IE + D +T K RG+ F++
Sbjct: 109 EIEAIELPMDPKTNKRRGFVFIT 131
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 130 (50.8 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 6 ALGTAESVLGGADGLVGSLATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSV 65
A+ A + GGA+ A + + +QQ D K+F+GGL + T+ K L E+ S
Sbjct: 36 AMEDATEMSGGAE----EFAEGSKINASKNQQDDG---KMFIGGLSWDTSKKDLTEYLSR 88
Query: 66 FGDIEEAVVITDRQTGKSRGYGFV 89
FG++ + + TD TG+SRG+GFV
Sbjct: 89 FGEVVDCTIKTDPVTGRSRGFGFV 112
Score = 102 (41.0 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+FVGGL T+++ ++E+F FG+IE + D +T + RG+ F++
Sbjct: 152 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 198
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 130 (50.8 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
G++ + K+FVGGL +TTD +RE +S FG+I + +V+ D T +SRG+GFV+
Sbjct: 13 GDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVT 70
Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
N + + + +L+V G+ T+ L E+F+ +G + ++ +I D+ T K RG+GFV+
Sbjct: 105 NRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 161
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 130 (50.8 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 26 TLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
TL T + +++ + KLF+GGL + TT++SLR ++ +G + + VV+ D + +SRG
Sbjct: 4 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 63
Query: 86 YGFVS 90
+GFV+
Sbjct: 64 FGFVT 68
Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGF 88
T KLFVGG+ T + LR++F +G ++ +ITDRQ+GK RG+GF
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGF 157
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 128 (50.1 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 4 PGALGTAESVLGGADGLVGSLATLTTPSVG---NSQQKDTTWTKLFVGGLPYHTTDKSLR 60
PGA A G G + + + G N+ + + K+FVGGL + T+ K L+
Sbjct: 34 PGAAAPATPA-GSGGGTTAAPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLK 92
Query: 61 EHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
++F+ FG++ + + D TG+SRG+GF+
Sbjct: 93 DYFTKFGEVVDCTIKMDPNTGRSRGFGFI 121
Score = 104 (41.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 30 PSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
P + +KD K+FVGGL T++ +RE+F FG+IE + D + K RG+ F+
Sbjct: 147 PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFI 205
Query: 90 S 90
+
Sbjct: 206 T 206
>TAIR|locus:2077577 [details] [associations]
symbol:AT3G06970 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:DQ446643 IPI:IPI00542567
RefSeq:NP_187353.2 UniGene:At.53209 ProteinModelPortal:Q1PES4
SMR:Q1PES4 EnsemblPlants:AT3G06970.1 GeneID:819882
KEGG:ath:AT3G06970 TAIR:At3g06970 eggNOG:NOG252859
HOGENOM:HOG000124795 InParanoid:Q1PES4 OMA:TNCNLAS
ProtClustDB:CLSN2920257 Genevestigator:Q1PES4 Uniprot:Q1PES4
Length = 317
Score = 129 (50.5 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 32 VGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+ + DT TK+FVG L + TT LR +F FG + +A V+++ G+S+GYGF++
Sbjct: 1 MSQTNNHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFIT 59
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 131 (51.2 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 24/47 (51%), Positives = 36/47 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLFVGGL + TT ++L +F FGDI + VV+ + ++G+SRG+GFV+
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVT 54
Score = 119 (46.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
K+F+GGLP + T+ LR F+ +G + E V++ D++ KSRG+GF+S
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLS 143
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 130 (50.8 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 10 AESVLGGADG--LVGSLATLTTPSVGNSQQKDTT-WTKLFVGGLPYHTTDKSLREHFSVF 66
A S L +G ++G + + +SQ+KDT+ +FVG L T + ++ F+ F
Sbjct: 59 AASALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPF 118
Query: 67 GDIEEAVVITDRQTGKSRGYGFVS 90
G I +A V+ D TGKS+GYGFVS
Sbjct: 119 GRISDARVVKDMATGKSKGYGFVS 142
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 128 (50.1 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
KLF+GGL + TTD+SLR HF +G + VV+ D T +SRG+GFV+
Sbjct: 15 KLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVT 60
Score = 107 (42.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 34 NSQQKDTTWT--KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+SQ D T K+FVGG+ +T D LR++F +G IE ++TDR +GK RG+ FV+
Sbjct: 93 DSQTLDAHLTVKKIFVGGIKENTEDH-LRDYFE-YGKIEVIEIMTDRGSGKKRGFTFVT 149
WARNING: HSPs involving 746 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 96 96 0.00091 102 3 11 22 0.41 30
29 0.43 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 996
No. of states in DFA: 523 (56 KB)
Total size of DFA: 101 KB (2071 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 10.55u 0.08s 10.63t Elapsed: 00:00:46
Total cpu time: 10.56u 0.08s 10.64t Elapsed: 00:00:50
Start: Thu Aug 15 13:07:27 2013 End: Thu Aug 15 13:08:17 2013
WARNINGS ISSUED: 2