RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17949
(96 letters)
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 64.6 bits (157), Expect = 7e-16
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDR-QTGKSRGYGFV 89
K T +K+ V +P+ + +RE FS FG+++ + TG RG+GFV
Sbjct: 4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFV 56
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 60.0 bits (145), Expect = 2e-14
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
K+F+GGL + TT + LRE+F FG+++E +V+ D T +SRG+GFV
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFV 47
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 60.9 bits (147), Expect = 2e-14
Identities = 46/56 (82%), Positives = 51/56 (91%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+ QKDTT+TK+FVGGLPYHTTD SLR++F FGDIEEAVVITDRQTGKSRGYGFV
Sbjct: 2 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 57
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 60.8 bits (147), Expect = 3e-14
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 26 TLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRG 85
TL T + +++ + KLF+GGL + TT++SLR ++ +G + + VV+ D + +SRG
Sbjct: 4 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 63
Query: 86 YGFV 89
+GFV
Sbjct: 64 FGFV 67
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 59.6 bits (144), Expect = 6e-14
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+ L V GLP+ TT++ L+E+FS FG++ V D +TG S+G+GFV
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFV 55
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 58.5 bits (141), Expect = 1e-13
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GFV
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 53
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 60.8 bits (146), Expect = 1e-13
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGF 88
KLF+GGL + TTD+SLR HF +G + + VV+ D T +SRG+GF
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 52
Score = 48.5 bits (114), Expect = 6e-09
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
T K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV
Sbjct: 91 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 144
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 57.3 bits (138), Expect = 3e-13
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
K+F+GGL + TT K L+++FS FG++ + + D TG+SRG+GFV
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 46
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 57.7 bits (139), Expect = 4e-13
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 32 VGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
V N ++ +F L + L + FS G + + +I+DR + +S+G +V
Sbjct: 8 VDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYV 65
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 57.1 bits (137), Expect = 5e-13
Identities = 8/51 (15%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVV-----ITDRQTGKSRGYGFV 89
+L+VG +P+ T++++ + F+ + + Q + + + F+
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFL 53
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 56.5 bits (136), Expect = 7e-13
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
L+VG L T+ L E FS G I V D T +S GY +V
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 47
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 56.1 bits (135), Expect = 8e-13
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
K+FVGGL T ++ +RE+F FG++E + D +T K RG+ F+
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 46
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 55.7 bits (134), Expect = 2e-12
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
T L+V LP TD L F +G I + ++ D+ TG+ RG FV
Sbjct: 7 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 53
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 54.3 bits (130), Expect = 5e-12
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
L+V GLP T K L + FS +G I + ++ D+ TG SRG GF+
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 53
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 53.1 bits (127), Expect = 2e-11
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 31 SVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYG-FV 89
S GNS+ K T +L V +P+ D LR+ F FG I + +I + + K G+ F
Sbjct: 1 SSGNSESKSTP-KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 59
Query: 90 SPS 92
+ +
Sbjct: 60 NSA 62
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 53.0 bits (127), Expect = 2e-11
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
L+VG L ++TT++ + E FS GDI++ ++ D+ + G+ FV
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 54
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 52.0 bits (124), Expect = 4e-11
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
T + V +P+ + + + F + I +V + + G G V
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMV 56
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 52.0 bits (124), Expect = 5e-11
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAV--VITDRQTGKSRGYGFV 89
+LF+GG+P + + E + + V + K+RG+ FV
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFV 50
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 51.2 bits (122), Expect = 9e-11
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLF+GGLP + D ++E + FG ++ ++ D TG S+GY F
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 48
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 49.7 bits (118), Expect = 3e-10
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
GN D L V GL +TT++ LRE FS +G I + ++ D+Q+ +SRG+ FV
Sbjct: 1 GNRANPDPN-CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 56
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 49.3 bits (117), Expect = 5e-10
Identities = 19/46 (41%), Positives = 34/46 (73%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
K+FVGGL +TT + ++ +F FG +++A+++ D+ T + RG+GFV
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFV 46
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 49.2 bits (117), Expect = 5e-10
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
T L V LP TD+ L F G I ++ D +TG S GY FV
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFV 49
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 50.0 bits (119), Expect = 5e-10
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
L++ LPY T + + + F +G I + I T ++RG +V
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYV 51
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 49.0 bits (116), Expect = 7e-10
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 45 LFVGGLPYHTTDKSLREHFSVFGDIEEAVVI-TDRQTGKSRGYGFV 89
+F+G L +K L + FS FG I + I D TG S+GY F+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFI 46
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 48.9 bits (116), Expect = 9e-10
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 27 LTTPSVG--NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSR 84
LT S+G SQ++ LF+ LP D+ L + F FG++ A V D+QT S+
Sbjct: 1 LTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 60
Query: 85 GYGFV 89
+GFV
Sbjct: 61 CFGFV 65
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 48.8 bits (116), Expect = 1e-09
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTG 81
Q ++ GG+ TD+ +R+ FS FG I E V ++
Sbjct: 13 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYS 57
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 48.5 bits (115), Expect = 1e-09
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 40 TTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
TT L+VGGL DK L F FGDI + + D +T K RG+ FV
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 52
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 47.8 bits (113), Expect = 2e-09
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
K+FVGG+ T + LR++F +G IE ++TDR +GK RG+ FV
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 49
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 47.7 bits (113), Expect = 2e-09
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 45 LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDR---QTGKSRGYGFV 89
LF+ L + TT+++L+ FS G I+ + + S G+GFV
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFV 48
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 46.6 bits (110), Expect = 6e-09
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
++VGGL ++ L E F G + + DR TG+ +GYGFV
Sbjct: 10 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV 56
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 46.5 bits (110), Expect = 6e-09
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KL V L + +D ++E F+ FG +++A V ++G+S G V
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY-DRSGRSLGTADV 46
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 46.2 bits (109), Expect = 9e-09
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYG-FVSPS 92
+F+ L +K+L + FS FG+I V+ D K G+ F +
Sbjct: 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 59
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 45.5 bits (107), Expect = 1e-08
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
T L V LP + T + R F G+IE ++ D+ TG+S GYGFV
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 49
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 45.4 bits (107), Expect = 2e-08
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 35 SQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+++ D + V L T + L+E F FG I + D+ TG+S+G+ F+
Sbjct: 2 NRRADDN-ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 55
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 44.7 bits (105), Expect = 2e-08
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KL++G L T LR+ F Q GY FV
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKL------PLAGQVLLKSGYAFV 42
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 44.7 bits (105), Expect = 4e-08
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSF 93
+++VG LP K + + F +G I + + R F P
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD 65
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 44.8 bits (105), Expect = 5e-08
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVI--------TDRQTGKSRGYGFV 89
+ ++V GL T L + F G ++ D++TGK +G V
Sbjct: 9 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 44.0 bits (103), Expect = 5e-08
Identities = 6/47 (12%), Positives = 20/47 (42%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
L++ P T +++R+ + ++ + + SR + ++
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYI 48
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 44.3 bits (104), Expect = 6e-08
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYG-FVSPS 92
L+VG L T+ + + FS G + +IT+ + + F
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHR 59
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 44.0 bits (103), Expect = 7e-08
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 30 PSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
P + + L++ L T++ L F+ F + + + TG+ RG F+
Sbjct: 7 PMFSSYNPGEPN-KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFI 65
Query: 90 SPSF 93
+
Sbjct: 66 TFPN 69
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 44.0 bits (103), Expect = 9e-08
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSR 84
F G L T + L FS G+I+ + + G
Sbjct: 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL 53
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 42.4 bits (99), Expect = 2e-07
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
KLFVGGL + T ++SL + FS +G I E VV+ DR+T +SRG+GFV
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 52
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 42.5 bits (99), Expect = 3e-07
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+ +P+ T + + E AV + G+ G V
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALV 55
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 42.5 bits (99), Expect = 3e-07
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 44 KLFVGGLPYHTTDKSLREHF---SVFGDIEEAVVITDRQTGKSRGYGFV 89
+FV GL D + + FG I + V+ S+G
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSAS 58
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 41.9 bits (98), Expect = 3e-07
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 36 QQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGD 68
++ T ++LFVG LP T++ +R+ F +G
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGK 34
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 42.5 bits (99), Expect = 3e-07
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 35 SQQKDTTWTKLFVGGLPYHTTDKSLREHF 63
++Q++ T L++ LP ++ L
Sbjct: 11 AKQQEQDPTNLYISNLPLSMDEQELENML 39
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 42.2 bits (99), Expect = 4e-07
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 31 SVGNSQQKD--TTWTKLFVGGLPYHTTDKS-LREHFSVFGDIEEAVVITDRQTGKSRGYG 87
S G+S + D + +++F+G L KS + FS +G I V +G+
Sbjct: 2 SSGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFA 53
Query: 88 FV 89
FV
Sbjct: 54 FV 55
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 41.0 bits (95), Expect = 8e-07
Identities = 8/47 (17%), Positives = 13/47 (27%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
T + V LP + ++F G I V +
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEF 47
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 41.2 bits (96), Expect = 1e-06
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPS 92
++ V L Y T L + FS FG + + + T ++ + +
Sbjct: 8 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYA 53
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 40.9 bits (95), Expect = 2e-06
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
F+G LPY T++S++E F + + +G+G+
Sbjct: 17 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYA 62
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 40.5 bits (94), Expect = 2e-06
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
Q+ LFV + + ++E F +G+I+ + DR+TG S+GY V
Sbjct: 2 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALV 54
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 40.5 bits (94), Expect = 2e-06
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+LFV L Y ++++ L + FS +G + E D T K +G+ FV
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFV 55
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 40.2 bits (93), Expect = 2e-06
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+F+ L + + +++L E FGD++ V+ T S+G F
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFA 55
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 40.0 bits (93), Expect = 2e-06
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 35 SQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+ +K L L ++ T+ L+E F +I Q GKS+G ++
Sbjct: 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEI-----RLVSQDGKSKGIAYI 58
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 39.3 bits (91), Expect = 4e-06
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+ D +++ G P T ++E G + + + +G FV
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFV 52
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 39.2 bits (91), Expect = 4e-06
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
L+V L T+++ + + F + K R Y FV
Sbjct: 10 ILYVRNLMLSTSEEMIEKEF------NNIKPGAVERVKKIRDYAFV 49
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.2 bits (91), Expect = 5e-06
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+ +FVG T+ LRE FS +GD+ + R + FV
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDV-----FIPKPFRAFAFV 47
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 38.4 bits (88), Expect = 9e-06
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 38 KDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+ TT LF+G L + + L+ S + V+ R TG +R +G+V
Sbjct: 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYV 59
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 38.3 bits (88), Expect = 1e-05
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 28 TTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYG 87
++ S GNS + + GLP+ + + + + FS + + + G+S G
Sbjct: 2 SSGSSGNSPDTAND-GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEA 60
Query: 88 FV 89
FV
Sbjct: 61 FV 62
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 37.7 bits (87), Expect = 1e-05
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 43 TKLFVGGLPYHTTDKSLREH-FSVFGDIEEAVVITDRQTGKSRGYGFV 89
+++ L L++ ++F + + I ++ K RG FV
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFV 51
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.7 bits (87), Expect = 2e-05
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 28 TTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYG 87
++ S + + + + ++ E +G++EE V + G
Sbjct: 16 SSQSADGLRSA---VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNV 71
Query: 88 FV 89
+V
Sbjct: 72 YV 73
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 37.6 bits (86), Expect = 4e-05
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVF 66
L V +P + LR+ F +
Sbjct: 43 RNLMVNYIPTTVDEVQLRQLFERY 66
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 36.1 bits (83), Expect = 5e-05
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 37 QKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
D TW + V G P + L F+ +G+I + V+ + + +
Sbjct: 1 HLDDTW--VTVFGFPQASASYILL-QFAQYGNILKHVMS------NTGNWMHI 44
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 35.5 bits (81), Expect = 9e-05
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 45 LFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
L++ GL TTD+ L + +G I I D+ T K +GYGFV
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFV 45
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.1 bits (80), Expect = 2e-04
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 38 KDTTWTKLFVGGLPYHTTDKSLREHF 63
D + +FVG +PY T++ L++ F
Sbjct: 4 VDRSLRSVFVGNIPYEATEEQLKDIF 29
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 35.0 bits (80), Expect = 2e-04
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 43 TKLFVGGLPYHTTDKSLREHF 63
T+L+VGGL +T+ +L F
Sbjct: 18 TRLWVGGLGPNTSLAALAREF 38
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 34.9 bits (79), Expect = 2e-04
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 44 KLFVGGLPYHTTDKSLREHF 63
++ V GLP + + L++H
Sbjct: 2 RVVVSGLPPSGSWQDLKDHM 21
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 34.2 bits (78), Expect = 3e-04
Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 8/47 (17%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
L+V G T LR FS FG+ I D R FV
Sbjct: 6 NTLYVYGED--MTPTLLRGAFSPFGN------IIDLSMDPPRNCAFV 44
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 34.0 bits (77), Expect = 5e-04
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTG 81
S K + + V GL + L E FG I +++ ++
Sbjct: 6 SGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQA 54
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 33.6 bits (76), Expect = 7e-04
Identities = 11/55 (20%), Positives = 18/55 (32%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYG 87
S + TT + + GLPY T+ + FS + + I
Sbjct: 6 SGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADV 60
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 33.6 bits (76), Expect = 8e-04
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFS 64
+ ++ V GLP + + L++H
Sbjct: 14 SDFRVLVSGLPPSGSWQDLKDHMR 37
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 33.4 bits (75), Expect = 0.001
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 33 GNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAV 73
G+S + T + LP T ++E FS FG + +
Sbjct: 1 GSSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL 41
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 32.8 bits (74), Expect = 0.002
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 34 NSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFV 89
+ T + GGL + L G ++ ++ ++ Y F
Sbjct: 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFA 61
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 31.6 bits (71), Expect = 0.003
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 43 TKLFVGGLPYHTTDKS-LREHFSVFGDI-EEAVVITDRQTGKSRGYGFV 89
++ + L D++ LRE F FG I + + ++ + F+
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFM 53
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 31.7 bits (71), Expect = 0.003
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 35 SQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIE 70
+Q + LF+ LP T + L F+ F +
Sbjct: 1 AQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFK 36
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 31.6 bits (71), Expect = 0.003
Identities = 4/38 (10%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 45 LFVGGLPY-HTTDKSLREHFSVFGDIEEAVVITDRQTG 81
+ + L + FG I +++
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEA 48
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.6 bits (71), Expect = 0.003
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVI 75
L + +P +++ L+ FS G + +
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 43
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.5 bits (71), Expect = 0.005
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 50 LPYHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVSPSFY 94
Y + +R+ S +G ++ + + G G + F
Sbjct: 22 EEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFT 66
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 31.5 bits (70), Expect = 0.008
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 41 TWTKLFVGGLPYHTTDKSLREHFSVFGDI---EEAVVITDRQTGKSRGYGFVSPSFYLI 96
++ G P++ + F +I E+ +R KS G + YL+
Sbjct: 170 SYDPTKHPGPPFYVPHAEIERLFGKICNIRCLEKVDAFEERH--KSWGIDCLFEKLYLL 226
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.5 bits (68), Expect = 0.008
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 43 TKLFVGGLPYHTTDKSLREHFSVFG 67
+ + V LP + + + + +
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYD 30
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 29.9 bits (66), Expect = 0.013
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 45 LFVGGLPYHTTDKSLREHFS 64
+ + GLP T++ + + S
Sbjct: 1 ILIRGLPGDVTNQEVHDLLS 20
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 27.1 bits (59), Expect = 0.18
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 44 KLFVGGLPYHTTDKSLREHFSVF 66
L + LP T+ + F
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPF 32
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 26.8 bits (59), Expect = 0.21
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 52 YHTTDKSLREHFSVFGDIEEAVVITDRQTGKSRGYGFVS 90
+ + LR S FG I + ++ G VS
Sbjct: 29 LNEIREDLRVECSKFGQIRKLLLFDRHP----DGVASVS 63
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 26.3 bits (57), Expect = 0.43
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 43 TKLFVGGL-PYHTTDKSLREHFSVFGDIEEAVV 74
+ L V L P T +SL F V+GD++ +
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI 35
>d1gpja3 d.58.39.1 (A:1-143) Glutamyl tRNA-reductase catalytic,
N-terminal domain {Archaeon Methanopyrus kandleri
[TaxId: 2320]}
Length = 143
Score = 26.1 bits (57), Expect = 0.56
Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 11/43 (25%)
Query: 45 LFVGGLPYHTTDKSLREHFSVFGD-----------IEEAVVIT 76
L G+ + + E D + +V++
Sbjct: 4 LVSVGITHKEAEVEELEKARFESDEAVRDIVESFGLSGSVLLQ 46
>d1aiea_ a.53.1.1 (A:) p53 tetramerization domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 23.7 bits (51), Expect = 1.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 60 REHFSVFGDIEEAVVITDRQTG 81
RE F +F ++ EA+ + D Q G
Sbjct: 10 RERFEMFRELNEALELKDAQAG 31
>d1yaro1 a.24.8.1 (O:4-231) Proteasome activator protein PA26
{Trypanosoma brucei [TaxId: 5691]}
Length = 228
Score = 25.0 bits (54), Expect = 1.5
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 48 GGLPYHTTDKSLREHFSVFGDIEEAVV-ITDRQTGKSRGYGFVSPSFYL 95
GG P +LRE+ S +E+ ++ D ++GK++G G SPS L
Sbjct: 131 GGAPTPIGMYALREYLSARSTVEDKLLGSVDAESGKTKG-GSQSPSLLL 178
>d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3
(RRP40) {Saccharomyces cerevisiae [TaxId: 4932]}
Length = 90
Score = 24.4 bits (53), Expect = 1.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 64 SVFGDIEEAVVITDRQTGKSRGYG 87
+ ++E + D TG+ G+G
Sbjct: 64 TAEKELEAEIECFDSTTGRDAGFG 87
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 24.0 bits (51), Expect = 3.9
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 25 ATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLR 60
+ ++ L VGG+P+H D
Sbjct: 141 MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQP 176
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 23.8 bits (51), Expect = 4.2
Identities = 8/55 (14%), Positives = 14/55 (25%)
Query: 24 LATLTTPSVGNSQQKDTTWTKLFVGGLPYHTTDKSLREHFSVFGDIEEAVVITDR 78
LA +V ++ D G E +EE + +
Sbjct: 89 LAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGEN 143
>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase
{Nostoc sp. pcc 7120 [TaxId: 103690]}
Length = 210
Score = 23.7 bits (51), Expect = 4.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 71 EAVVITDRQTGKSRGYGFVS 90
+A+ D + K+RG+ FVS
Sbjct: 191 KAMNTVDSVSQKTRGFVFVS 210
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.395
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 337,229
Number of extensions: 12657
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 95
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)