BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1795
         (96 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
           Acetylgalactosaminyltransferase-T1
          Length = 472

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 37/118 (31%)

Query: 2   DFGDVTSRKELRRNLGCKSFKWYLDNIYPELFIPGDAVASGDRR---------------- 45
           D+GD++SR  LRR L CK F WYL+NIYP+  IP    + G+ R                
Sbjct: 305 DYGDISSRLGLRRKLQCKPFSWYLENIYPDSQIPRHYFSLGEIRNVETNQCLDNMARKEN 364

Query: 46  --------------LIFHGTSKK-------CLAISTNKLKLTMQDCDEERSNQRWDFE 82
                          +F  T+ K       CL +S     +TM  C   + NQ W+++
Sbjct: 365 EKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNGPVTMLKCHHLKGNQLWEYD 422


>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
           And Ea2
 pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
 pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
          Length = 501

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 27/33 (81%)

Query: 3   FGDVTSRKELRRNLGCKSFKWYLDNIYPELFIP 35
           +G++ SR ELR+ L CK FKWYL+N+YPEL +P
Sbjct: 338 YGNIQSRLELRKKLSCKPFKWYLENVYPELRVP 370


>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
           Mn2+
 pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
           Galnac-ser On Lectin Domain
          Length = 570

 Score = 37.7 bits (86), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 4   GDVTSRKELRRNLGCKSFKWYLDNI---YPELFIPGD--AVASGDRRLIFHGTSKKCLAI 58
           GDV  +K+LR +L CKSFKW++  I    P+ + P +  A A G+ R +  G    C   
Sbjct: 385 GDVAVQKKLRSSLNCKSFKWFMTKIAWDLPKFYPPVEPPAAAWGEIRNVGTGL---CADT 441

Query: 59  STNKL--KLTMQDCDEERSNQRWD 80
               L   L ++ C   R    W+
Sbjct: 442 KHGALGSPLRLEGCVRGRGEAAWN 465



 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 45  RLIFHGTSKKCLAISTNKLKLTMQDCDEERSNQRWDFEN 83
           + ++H  S  C+  S +  ++ M  C+     Q+W FE+
Sbjct: 520 KTLYHPVSGSCMDCSESDHRIFMNTCNPSSLTQQWLFEH 558


>pdb|2C7J|B Chain B, Phycoerythrocyanin From Mastigocladus Laminosus, 295 K,
           3.0 A
 pdb|2C7K|B Chain B, Laue Structure Of Phycoerythrocyanin From Mastigocladus
           Laminosus
 pdb|2C7L|B Chain B, Low Temperature Structure Of Phycoerythrocyanin From
           Mastigocladus Laminosus
          Length = 172

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 25  LDNIYPELFIPGDAVASGDRRLIFHGTSKKCLAISTNKLKLTMQDCDE 72
           L   Y  L  PGDAVASG +++      +  L I+ +   +T  DC +
Sbjct: 113 LRETYQALGTPGDAVASGIKKM-----KEAALKIANDPNGITKGDCSQ 155


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,911,560
Number of Sequences: 62578
Number of extensions: 102573
Number of successful extensions: 222
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 10
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)