Query psy1795
Match_columns 96
No_of_seqs 105 out of 735
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 18:26:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3736|consensus 99.9 3.5E-23 7.7E-28 166.9 5.1 82 1-85 414-500 (578)
2 KOG3737|consensus 99.8 2.1E-20 4.6E-25 146.2 3.5 85 2-86 438-602 (603)
3 KOG3738|consensus 99.8 2.1E-20 4.5E-25 146.2 2.3 78 1-83 393-473 (559)
4 PF00652 Ricin_B_lectin: Ricin 97.5 0.00019 4.2E-09 45.5 4.1 43 40-85 1-46 (124)
5 PF00652 Ricin_B_lectin: Ricin 97.0 0.00081 1.8E-08 42.6 3.1 33 46-79 90-124 (124)
6 cd00161 RICIN Ricin-type beta- 96.9 0.0022 4.7E-08 40.0 4.6 32 52-83 9-42 (124)
7 cd00161 RICIN Ricin-type beta- 96.8 0.0021 4.6E-08 40.0 4.1 35 46-81 87-124 (124)
8 KOG3736|consensus 96.6 0.002 4.3E-08 53.1 3.5 41 45-85 536-576 (578)
9 smart00458 RICIN Ricin-type be 96.6 0.0051 1.1E-07 38.6 4.4 36 46-82 80-117 (117)
10 smart00458 RICIN Ricin-type be 96.5 0.0046 1E-07 38.8 3.8 32 52-83 45-77 (117)
11 PF14200 RicinB_lectin_2: Rici 95.8 0.017 3.7E-07 36.5 4.2 38 45-82 64-105 (105)
12 PF14200 RicinB_lectin_2: Rici 95.2 0.038 8.3E-07 34.9 4.1 47 45-92 17-67 (105)
13 KOG3737|consensus 91.8 0.077 1.7E-06 42.8 1.1 41 45-85 482-524 (603)
14 KOG3738|consensus 84.9 0.65 1.4E-05 37.6 2.0 38 46-83 517-555 (559)
15 PF03498 CDtoxinA: Cytolethal 81.3 2.3 5.1E-05 29.4 3.4 51 41-93 51-101 (150)
16 PF03498 CDtoxinA: Cytolethal 78.9 3.1 6.7E-05 28.8 3.5 41 42-83 95-143 (150)
17 PF03002 Somatostatin: Somatos 67.3 1.3 2.8E-05 20.2 -0.5 10 14-23 3-12 (18)
18 PLN02899 alpha-galactosidase 62.8 4.7 0.0001 34.0 1.6 43 42-85 476-525 (633)
19 PF07598 DUF1561: Protein of u 60.1 8.9 0.00019 32.2 2.8 32 52-83 90-128 (632)
20 cd08321 Pyrin_ASC-like Pyrin D 38.7 8.2 0.00018 23.9 -0.4 13 19-31 17-29 (82)
21 TIGR01319 glmL_fam conserved h 37.9 18 0.0004 29.5 1.3 35 3-37 157-192 (463)
22 PF08854 DUF1824: Domain of un 37.4 46 0.001 22.5 3.0 71 6-76 18-111 (125)
23 PF12166 DUF3595: Protein of u 32.5 90 0.0019 24.4 4.4 75 5-85 219-300 (422)
24 PF10461 Peptidase_S68: Peptid 31.9 13 0.00029 19.8 -0.3 7 20-26 25-31 (35)
25 PF13941 MutL: MutL protein 29.5 24 0.00053 28.7 0.8 34 3-36 161-195 (457)
26 cd08684 C2A_Tac2-N C2 domain f 26.9 20 0.00044 23.4 -0.1 13 16-28 6-18 (103)
27 PF05595 DUF771: Domain of unk 26.6 38 0.00083 21.1 1.2 27 8-35 25-51 (91)
28 cd05896 Ig1_IL1RAPL-1_like Fir 25.0 23 0.0005 23.1 -0.1 17 15-31 19-35 (104)
29 PF15062 ARL6IP6: Haemopoietic 23.3 22 0.00048 22.6 -0.4 22 15-36 33-57 (85)
No 1
>KOG3736|consensus
Probab=99.88 E-value=3.5e-23 Score=166.93 Aligned_cols=82 Identities=39% Similarity=0.754 Sum_probs=71.6
Q ss_pred CCCCCchHHHHHHHHcCCcCchhchhccCcCCCCCCCC-cccceeEEEeecCCCceeeeeC----CCCeEEEEcCCCCCC
Q psy1795 1 GDFGDVTSRKELRRNLGCKSFKWYLDNIYPELFIPGDA-VASGDRRLIFHGTSKKCLAIST----NKLKLTMQDCDEERS 75 (96)
Q Consensus 1 ~~~Gdis~r~~LR~~L~CKsF~WyL~nVyPe~~~p~~~-~~~G~i~~i~~~~~~~CL~~~~----~~~~v~l~~C~~~~~ 75 (96)
.++||||+|++||++|+||||+|||+|||||+++|.+. .++|+| ++..++.|+|... .|..+++++||+.+.
T Consensus 414 ~d~GDvseR~~LR~~L~CKsFkWyL~nVyPel~~~~~~~~~~G~i---~~~~~~~cld~~~~~~~~~~~~~~~~Ch~~~~ 490 (578)
T KOG3736|consen 414 IDEGDLTERKALRERLNCKSFKWYLENVYPELYLPTPHVYASGEI---RNGNPNLCLDTERAPAGQGMAVGLYPCHGPGG 490 (578)
T ss_pred cCCCCchhHHHHHHhcCCccccchHhhcCccccCCCCccccccee---ccCCcchhhhhhchhccCCCcceEecCCCccc
Confidence 47999999999999999999999999999999999766 678887 3367899999753 246899999999999
Q ss_pred CcceEeeecC
Q psy1795 76 NQRWDFENYE 85 (96)
Q Consensus 76 ~Q~W~~~~~~ 85 (96)
+|.|.++..+
T Consensus 491 ~Q~~~yT~~~ 500 (578)
T KOG3736|consen 491 NQYFPYTKQG 500 (578)
T ss_pred cccccccCCc
Confidence 9999988754
No 2
>KOG3737|consensus
Probab=99.80 E-value=2.1e-20 Score=146.20 Aligned_cols=85 Identities=28% Similarity=0.641 Sum_probs=68.8
Q ss_pred CCCCchHHHHHHHHcCCcCchhchhccCcCCC----CCCCCccccee---------------------------------
Q psy1795 2 DFGDVTSRKELRRNLGCKSFKWYLDNIYPELF----IPGDAVASGDR--------------------------------- 44 (96)
Q Consensus 2 ~~Gdis~r~~LR~~L~CKsF~WyL~nVyPe~~----~p~~~~~~G~i--------------------------------- 44 (96)
++||||++++||++|+||||+|||++|+.|.+ .++.+.-||++
T Consensus 438 ~~GDISeqlalr~~lnCkSFkWfMe~iAYDv~~~yP~lP~N~~WGE~R~~at~~ClDsMG~~p~g~mglt~CHg~GgNQL 517 (603)
T KOG3737|consen 438 PYGDISEQLALREDLNCKSFKWFMEEIAYDVTSHYPLLPKNVDWGEIRGFATAYCLDSMGKTPGGFMGLTPCHGMGGNQL 517 (603)
T ss_pred CcccHHHHHHhHhhcCCchhHHHHHHHHHHHHhcCCCCCCCCcchhccCcccchhHHhcCCCCCCccccccccCCCCceE
Confidence 68999999999999999999999999987752 23344556665
Q ss_pred -------------------------------------------EEEeecCCCceeeeeCCCCeEEEEcCCCCCCCcceEe
Q psy1795 45 -------------------------------------------RLIFHGTSKKCLAISTNKLKLTMQDCDEERSNQRWDF 81 (96)
Q Consensus 45 -------------------------------------------~~i~~~~~~~CL~~~~~~~~v~l~~C~~~~~~Q~W~~ 81 (96)
+++.|..++.|++.++.+..|.+..|+.++..|+|.+
T Consensus 518 ~RlN~agQl~qge~CltAdg~~i~~~hC~lgtv~g~WqY~~~tk~~~H~~~~kC~~~se~~~qv~l~~Cd~~~~~Qkw~~ 597 (603)
T KOG3737|consen 518 FRLNEAGQLMQGEQCLTADGSKIMITHCNLGTVKGEWQYFKNTKRFTHIPSGKCLDRSEVLHQVFLSNCDSSKTTQKWEM 597 (603)
T ss_pred EEeccccchhccceeeecCCceEEEEEeecccccCceehhhcchheeeccccccccccchhheeeecccCCCchhheeeh
Confidence 4556667788888888888889999988888888888
Q ss_pred eecCc
Q psy1795 82 ENYEA 86 (96)
Q Consensus 82 ~~~~~ 86 (96)
++++.
T Consensus 598 kei~~ 602 (603)
T KOG3737|consen 598 KEIHS 602 (603)
T ss_pred hhccc
Confidence 87653
No 3
>KOG3738|consensus
Probab=99.79 E-value=2.1e-20 Score=146.17 Aligned_cols=78 Identities=41% Similarity=0.802 Sum_probs=66.0
Q ss_pred CCCCCchHHHHHHHHcCCcCchhchhccCcCCCCCCC-CcccceeEEEeecCCCceeeeeCCCC--eEEEEcCCCCCCCc
Q psy1795 1 GDFGDVTSRKELRRNLGCKSFKWYLDNIYPELFIPGD-AVASGDRRLIFHGTSKKCLAISTNKL--KLTMQDCDEERSNQ 77 (96)
Q Consensus 1 ~~~Gdis~r~~LR~~L~CKsF~WyL~nVyPe~~~p~~-~~~~G~i~~i~~~~~~~CL~~~~~~~--~v~l~~C~~~~~~Q 77 (96)
+.||+|.+|+++|++|+||||+|||+|||||+.+|.+ ..+.|.+ + ..+.||++...+. .+.|..|+..+++|
T Consensus 393 vpfg~i~~rL~~Rk~l~CksFkWYLenVyPeL~ip~~~~~~~g~l---r--qg~~Cl~s~~~~~~~~~gl~~C~~s~~nq 467 (559)
T KOG3738|consen 393 VPFGNIYDRLELRKKLRCKSFKWYLENVYPELRIPFKELIATGTL---R--QGDNCLDSQGQNSQEALGLASCHGSGGNQ 467 (559)
T ss_pred CCCccHHHHHHHHhhcCCcchhhhhhhcCcceeccccccccccch---h--ccchhhhhhhcccccCcceeecccCCCCc
Confidence 3689999999999999999999999999999999964 5577866 3 2479999875332 47799999999999
Q ss_pred ceEeee
Q psy1795 78 RWDFEN 83 (96)
Q Consensus 78 ~W~~~~ 83 (96)
+|.+..
T Consensus 468 qwa~~~ 473 (559)
T KOG3738|consen 468 QWAFLR 473 (559)
T ss_pred chhhhh
Confidence 999854
No 4
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=97.48 E-value=0.00019 Score=45.49 Aligned_cols=43 Identities=33% Similarity=0.520 Sum_probs=31.3
Q ss_pred ccceeEEEeecCCCceeeee---CCCCeEEEEcCCCCCCCcceEeeecC
Q psy1795 40 ASGDRRLIFHGTSKKCLAIS---TNKLKLTMQDCDEERSNQRWDFENYE 85 (96)
Q Consensus 40 ~~G~i~~i~~~~~~~CL~~~---~~~~~v~l~~C~~~~~~Q~W~~~~~~ 85 (96)
|+|.|+ +... +++||++. ..+.+|+|.+|+. ..+|.|.|....
T Consensus 1 ~~g~i~-~~~~-~~~cl~~~~~~~~~~~v~l~~c~~-~~~Q~w~~~~~~ 46 (124)
T PF00652_consen 1 ASGYIR-NVNK-SGLCLDVQGSTKNGSPVVLYPCDG-SDNQLWRFDPDG 46 (124)
T ss_dssp EEEEEE-EEEG-GGEEEEEGGSSSTTTBEEEEE--S-SGGGEEEEETTS
T ss_pred CceEEE-EeeC-CCCeEEEcCCCCCCCEEEEEECCC-CCceeEEEcCCC
Confidence 466663 3333 89999998 5688999999999 678999887754
No 5
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=96.98 E-value=0.00081 Score=42.57 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=27.2
Q ss_pred EEeecCCCceeeeeC--CCCeEEEEcCCCCCCCcce
Q psy1795 46 LIFHGTSKKCLAIST--NKLKLTMQDCDEERSNQRW 79 (96)
Q Consensus 46 ~i~~~~~~~CL~~~~--~~~~v~l~~C~~~~~~Q~W 79 (96)
.|.+..+++||++.. .+.+|++.+| ..+++|+|
T Consensus 90 ~i~n~~s~~cL~~~~~~~~~~l~~~~c-~~~~~Q~W 124 (124)
T PF00652_consen 90 RIRNKNSGLCLDVKGGSDGNPLVLWPC-NGSPNQQW 124 (124)
T ss_dssp BEEETTTTEEEEEGGGSTTEBEEEEE--TSSGGGBE
T ss_pred eEEeCCCCEEEEecCCCCCCEEEEEEC-CCCccccC
Confidence 457777899999976 7889999999 66789999
No 6
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=96.90 E-value=0.0022 Score=39.96 Aligned_cols=32 Identities=19% Similarity=0.551 Sum_probs=27.9
Q ss_pred CCceeeeeC--CCCeEEEEcCCCCCCCcceEeee
Q psy1795 52 SKKCLAIST--NKLKLTMQDCDEERSNQRWDFEN 83 (96)
Q Consensus 52 ~~~CL~~~~--~~~~v~l~~C~~~~~~Q~W~~~~ 83 (96)
+++||++.. .+..|.+.+|++...+|.|.+..
T Consensus 9 ~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~ 42 (124)
T cd00161 9 TGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTS 42 (124)
T ss_pred CCeEEECCCCCCCCEEEEEECCCCCccCCEEEeC
Confidence 799999875 36799999999887899999986
No 7
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=96.84 E-value=0.0021 Score=40.04 Aligned_cols=35 Identities=34% Similarity=0.631 Sum_probs=28.4
Q ss_pred EEeecCCCceeeeeCC---CCeEEEEcCCCCCCCcceEe
Q psy1795 46 LIFHGTSKKCLAISTN---KLKLTMQDCDEERSNQRWDF 81 (96)
Q Consensus 46 ~i~~~~~~~CL~~~~~---~~~v~l~~C~~~~~~Q~W~~ 81 (96)
.|.+..+++||++... +..|.+.+|+.. .+|+|.|
T Consensus 87 ~i~~~~~~~cl~~~~~~~~~~~v~~~~c~~~-~~Q~W~~ 124 (124)
T cd00161 87 TIRNLKSGKCLDVKGGNTNGTNLILWTCDGG-PNQKWKF 124 (124)
T ss_pred EEEECCCCeEEeCCCCCCCCCEEEEEeCCCC-ccceEeC
Confidence 4566678999998653 578999999886 8999975
No 8
>KOG3736|consensus
Probab=96.63 E-value=0.002 Score=53.15 Aligned_cols=41 Identities=32% Similarity=0.646 Sum_probs=34.5
Q ss_pred EEEeecCCCceeeeeCCCCeEEEEcCCCCCCCcceEeeecC
Q psy1795 45 RLIFHGTSKKCLAISTNKLKLTMQDCDEERSNQRWDFENYE 85 (96)
Q Consensus 45 ~~i~~~~~~~CL~~~~~~~~v~l~~C~~~~~~Q~W~~~~~~ 85 (96)
++|.|..+++||++......+.|..|+..+..|+|.|.+++
T Consensus 536 ~~i~~~~sg~CL~~~~~~~~~~l~~c~~~~~~Q~W~~~~~~ 576 (578)
T KOG3736|consen 536 GTLYHRNSGKCLEAAVDKNGLILVACDPSDPTQQWLFEHVN 576 (578)
T ss_pred CceEcCCCCccccccCCCCCceEeecCCCCCcceEEEEecC
Confidence 45688889999998765445999999999999999998865
No 9
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=96.56 E-value=0.0051 Score=38.61 Aligned_cols=36 Identities=31% Similarity=0.605 Sum_probs=27.9
Q ss_pred EEeecCCCceeeeeCCCC--eEEEEcCCCCCCCcceEee
Q psy1795 46 LIFHGTSKKCLAISTNKL--KLTMQDCDEERSNQRWDFE 82 (96)
Q Consensus 46 ~i~~~~~~~CL~~~~~~~--~v~l~~C~~~~~~Q~W~~~ 82 (96)
.|.+..+++||++..... ++.+.+|+.. .+|+|.+.
T Consensus 80 ~i~~~~~~~cl~~~~~~~~~~~~~~~c~~~-~~Q~W~~~ 117 (117)
T smart00458 80 TIRNPDSGLCLDVKDGNTGTKVILWTCNGN-PNQKWIFE 117 (117)
T ss_pred eEEeCCCCEEEecCCCCCCceEEEEeCCCC-ccccEEeC
Confidence 456667899999864333 7999999876 79999863
No 10
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=96.47 E-value=0.0046 Score=38.81 Aligned_cols=32 Identities=28% Similarity=0.641 Sum_probs=22.6
Q ss_pred CCceeeeeCCC-CeEEEEcCCCCCCCcceEeee
Q psy1795 52 SKKCLAISTNK-LKLTMQDCDEERSNQRWDFEN 83 (96)
Q Consensus 52 ~~~CL~~~~~~-~~v~l~~C~~~~~~Q~W~~~~ 83 (96)
.++||++.... ..+.+..|++...+|+|.+..
T Consensus 45 ~~~Cl~~~~~~~~~v~l~~c~~~~~~Q~W~~~~ 77 (117)
T smart00458 45 TDLCLTANGNTGSTVTLYSCDGDADNQYWTVNK 77 (117)
T ss_pred CCccCccCCCCCCEEEEEECCCCCcCCEEEECC
Confidence 46777776543 467788887777778887766
No 11
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=95.85 E-value=0.017 Score=36.54 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=29.3
Q ss_pred EEEeecCCCceeeee----CCCCeEEEEcCCCCCCCcceEee
Q psy1795 45 RLIFHGTSKKCLAIS----TNKLKLTMQDCDEERSNQRWDFE 82 (96)
Q Consensus 45 ~~i~~~~~~~CL~~~----~~~~~v~l~~C~~~~~~Q~W~~~ 82 (96)
..|....+++|||+. ..|..|.+.+|+....+|+|.|+
T Consensus 64 y~I~n~~s~~~Ldv~~~~~~~g~~v~~~~~~~~~~~Q~W~l~ 105 (105)
T PF14200_consen 64 YRIRNKNSGKVLDVAGGSTANGTNVQQWEYDNGSDNQQWKLE 105 (105)
T ss_dssp EEEEETSTTEEEEEGGGSSSTTEBEEEEE-STSSGGGEEEEE
T ss_pred EEEEECCCCcEEEECCCCCCCCCEEEEEeCCCCCccCEEEeC
Confidence 356677789999985 24678999999666789999875
No 12
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=95.23 E-value=0.038 Score=34.92 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=36.7
Q ss_pred EEEeecCCCceeeeeC----CCCeEEEEcCCCCCCCcceEeeecCcchhhhc
Q psy1795 45 RLIFHGTSKKCLAIST----NKLKLTMQDCDEERSNQRWDFENYEADKISLL 92 (96)
Q Consensus 45 ~~i~~~~~~~CL~~~~----~~~~v~l~~C~~~~~~Q~W~~~~~~~~~~~~~ 92 (96)
..|.+..+++||++.. .|..|...+|+. ..+|+|.+.........+.
T Consensus 17 Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~-~~~Q~W~i~~~~~g~y~I~ 67 (105)
T PF14200_consen 17 YKIRNVNSGKYLDVAGGSTANGTNVQQWTCNG-NDNQQWKIEPVGDGYYRIR 67 (105)
T ss_dssp EEEEETTTTEEEEEGCTTCSTTEBEEEEESSS-SGGGEEEEEESTTSEEEEE
T ss_pred EEEEECCCCCEEEeCCCCcCCCcEEEEecCCC-CcCcEEEEEEecCCeEEEE
Confidence 3567778999999863 456899999998 7899999998776544443
No 13
>KOG3737|consensus
Probab=91.79 E-value=0.077 Score=42.83 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=35.1
Q ss_pred EEEeecCCCceeeeeC--CCCeEEEEcCCCCCCCcceEeeecC
Q psy1795 45 RLIFHGTSKKCLAIST--NKLKLTMQDCDEERSNQRWDFENYE 85 (96)
Q Consensus 45 ~~i~~~~~~~CL~~~~--~~~~v~l~~C~~~~~~Q~W~~~~~~ 85 (96)
..++...++.|||... +++.+.+.+||+.++||..+++..+
T Consensus 482 GE~R~~at~~ClDsMG~~p~g~mglt~CHg~GgNQL~RlN~ag 524 (603)
T KOG3737|consen 482 GEIRGFATAYCLDSMGKTPGGFMGLTPCHGMGGNQLFRLNEAG 524 (603)
T ss_pred hhccCcccchhHHhcCCCCCCccccccccCCCCceEEEecccc
Confidence 5677778899999874 5688999999999999999998754
No 14
>KOG3738|consensus
Probab=84.87 E-value=0.65 Score=37.65 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=31.2
Q ss_pred EEeecCCCceeeeeCCCC-eEEEEcCCCCCCCcceEeee
Q psy1795 46 LIFHGTSKKCLAISTNKL-KLTMQDCDEERSNQRWDFEN 83 (96)
Q Consensus 46 ~i~~~~~~~CL~~~~~~~-~v~l~~C~~~~~~Q~W~~~~ 83 (96)
.+.|..+.+||+....|+ -+.+.+|......|.|.|..
T Consensus 517 ~l~h~~s~KOGd~~~~g~~~l~~~~C~~~~~sQ~w~f~~ 555 (559)
T KOG3738|consen 517 HLLHAGSHLCLDNPLKGRWLLEVSTCESHLVSQSWQFAL 555 (559)
T ss_pred chhcccccceeccccCCCcceeecccccccccceeeeeh
Confidence 346777899999876555 58999999999999999865
No 15
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=81.25 E-value=2.3 Score=29.45 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=34.3
Q ss_pred cceeEEEeecCCCceeeeeCCCCeEEEEcCCCCCCCcceEeeecCcchhhhcc
Q psy1795 41 SGDRRLIFHGTSKKCLAISTNKLKLTMQDCDEERSNQRWDFENYEADKISLLS 93 (96)
Q Consensus 41 ~G~i~~i~~~~~~~CL~~~~~~~~v~l~~C~~~~~~Q~W~~~~~~~~~~~~~~ 93 (96)
.|.| ++.+..++.||.+-.. +.+....|+..+..|.|++--.....+-+.|
T Consensus 51 ~g~V-qf~n~~~~~CL~~~~~-G~~~~~~C~~~~~~q~F~iiPtttgAVQIks 101 (150)
T PF03498_consen 51 FGYV-QFVNPKTGTCLAAYGN-GVFHYKSCDQDNLEQVFSIIPTTTGAVQIKS 101 (150)
T ss_dssp TCEE-EEEETTTSEEEEEETT-CEEEE--TTTCHGHH-EEEEEBTTS-EEEEE
T ss_pred CCEE-EEEcCCCCcceeecCC-CeEeecccCCCChhceEEEEEcCCCcEEEEe
Confidence 4666 7888888889998543 3344444999888899999887766655443
No 16
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=78.92 E-value=3.1 Score=28.83 Aligned_cols=41 Identities=22% Similarity=0.410 Sum_probs=23.8
Q ss_pred ceeEEEeecCCCceeeeeCCC-----CeEEEEcCCCC---CCCcceEeee
Q psy1795 42 GDRRLIFHGTSKKCLAISTNK-----LKLTMQDCDEE---RSNQRWDFEN 83 (96)
Q Consensus 42 G~i~~i~~~~~~~CL~~~~~~-----~~v~l~~C~~~---~~~Q~W~~~~ 83 (96)
|.+ ||++..++.|+.+.... ..+.+.+|+.. +..|+|.++-
T Consensus 95 gAV-QIks~~~~~Cl~~~~~~~~~~~~~i~l~~Cd~~~~~~l~~lw~itP 143 (150)
T PF03498_consen 95 GAV-QIKSLSTGECLQTFNNSRTPIYYSIGLTPCDKSKEINLDQLWFITP 143 (150)
T ss_dssp S-E-EEEETTT--EEEE-STTSS-SSEEEEEE---S-EEETGGGEEEEE-
T ss_pred CcE-EEEecCCCceEEecCCCceeEEeeEEeeeCCCcCCCCHHHcEEEcC
Confidence 444 78888889999986543 38999999432 2478898764
No 17
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=67.31 E-value=1.3 Score=20.25 Aligned_cols=10 Identities=60% Similarity=1.477 Sum_probs=8.3
Q ss_pred HHcCCcCchh
Q psy1795 14 RNLGCKSFKW 23 (96)
Q Consensus 14 ~~L~CKsF~W 23 (96)
++..||.|-|
T Consensus 3 ~k~~CknffW 12 (18)
T PF03002_consen 3 RKAGCKNFFW 12 (18)
T ss_pred ccccccceee
Confidence 5678999987
No 18
>PLN02899 alpha-galactosidase
Probab=62.79 E-value=4.7 Score=34.03 Aligned_cols=43 Identities=23% Similarity=0.452 Sum_probs=29.0
Q ss_pred ceeEEEeecCCCceeeeeCCC-------CeEEEEcCCCCCCCcceEeeecC
Q psy1795 42 GDRRLIFHGTSKKCLAISTNK-------LKLTMQDCDEERSNQRWDFENYE 85 (96)
Q Consensus 42 G~i~~i~~~~~~~CL~~~~~~-------~~v~l~~C~~~~~~Q~W~~~~~~ 85 (96)
|.++.........|||++++. +.-.+.+| ....+|.|+++.-.
T Consensus 476 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~fs~c-~~~~~q~w~l~~~g 525 (633)
T PLN02899 476 GKLHLLTSDGGELCLDASPKQKRTSKDFRSGSFSPC-RWDANQMWELNNNG 525 (633)
T ss_pred ceEEeeeccccChhhccCCCCCcCHhHhhccccCCC-CCChhhceeeCCCC
Confidence 444444444568999987532 23468899 45789999998743
No 19
>PF07598 DUF1561: Protein of unknown function (DUF1561); InterPro: IPR011455 This is a family of paralogous proteins in Leptospira interrogans.
Probab=60.09 E-value=8.9 Score=32.20 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=25.7
Q ss_pred CCceeeeeC-------CCCeEEEEcCCCCCCCcceEeee
Q psy1795 52 SKKCLAIST-------NKLKLTMQDCDEERSNQRWDFEN 83 (96)
Q Consensus 52 ~~~CL~~~~-------~~~~v~l~~C~~~~~~Q~W~~~~ 83 (96)
.=+|+++.+ .-.-|.+.||--++++|+|.+..
T Consensus 90 tWLCmTAP~sVtk~~~~WdYl~LRPCvINDpnQrWIIKd 128 (632)
T PF07598_consen 90 TWLCMTAPESVTKSTANWDYLLLRPCVINDPNQRWIIKD 128 (632)
T ss_pred EEEEEecCchhcccccccceEEEeeeeECCCCceEEEeC
Confidence 358998743 34579999999999999999865
No 20
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=38.68 E-value=8.2 Score=23.91 Aligned_cols=13 Identities=54% Similarity=0.864 Sum_probs=11.0
Q ss_pred cCchhchhccCcC
Q psy1795 19 KSFKWYLDNIYPE 31 (96)
Q Consensus 19 KsF~WyL~nVyPe 31 (96)
+.|+|||.++.++
T Consensus 17 kkFK~~L~~~~~~ 29 (82)
T cd08321 17 KKFKWKLRDIPLE 29 (82)
T ss_pred HHHHHHHhhhhhc
Confidence 5799999998766
No 21
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=37.92 E-value=18 Score=29.50 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCCchHHHHHHHHcCCcCchhch-hccCcCCCCCCC
Q psy1795 3 FGDVTSRKELRRNLGCKSFKWYL-DNIYPELFIPGD 37 (96)
Q Consensus 3 ~Gdis~r~~LR~~L~CKsF~WyL-~nVyPe~~~p~~ 37 (96)
.|+.+.+-++++-|.-+.=.-|+ +||+|++..+..
T Consensus 157 AGN~~a~~~V~~il~~~~~~~~i~eNV~P~i~~ln~ 192 (463)
T TIGR01319 157 AGNKDIQDEVQEIFDHADIFYRITDNVLPDLDHLNP 192 (463)
T ss_pred eCCHHHHHHHHHHHhcCCceEEecCCcCCCCCCcCc
Confidence 59999999999999977655555 999999876543
No 22
>PF08854 DUF1824: Domain of unknown function (DUF1824); InterPro: IPR014953 This uncharacterised group of proteins are principally found in cyanobacteria. ; PDB: 2Q22_B.
Probab=37.38 E-value=46 Score=22.47 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=37.8
Q ss_pred chHHHHHHHHc--CCcCchhchhccC--------------------cCCCCCCCCcccceeEEEeecCCCceeeeeCCCC
Q psy1795 6 VTSRKELRRNL--GCKSFKWYLDNIY--------------------PELFIPGDAVASGDRRLIFHGTSKKCLAISTNKL 63 (96)
Q Consensus 6 is~r~~LR~~L--~CKsF~WyL~nVy--------------------Pe~~~p~~~~~~G~i~~i~~~~~~~CL~~~~~~~ 63 (96)
.++|+.||+.| -+..++|++--|. |.+.+.+....-|.|..-.+..++.|.-....|.
T Consensus 18 ~~~~~~Lr~~L~~~~~~sd~~~lGIcA~s~~~ai~ALr~~~~alg~~~~~~~~~~~~~GpVfLK~N~~tg~~yv~~y~G~ 97 (125)
T PF08854_consen 18 PSQRKKLRQALRLLASNSDWFTLGICAPSAEEAIAALRSYEQALGYPPLEPLDSPPIEGPVFLKANQKTGSCYVRSYTGL 97 (125)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEEEESSHHHHHHHHHHHHHHTT------------SSSEEEEEETTT--EEEEE--S-
T ss_pred HHHHHHHHHHHHHHHhccCceEEEeecCCHHHHHHHHHHHHHHcCCCccCCCCCCCCCCCEEEEecCCCCcEEEeecCCc
Confidence 56788888865 4777889887773 2221112223346664445666788877665443
Q ss_pred -eEEEEcCCCCCCC
Q psy1795 64 -KLTMQDCDEERSN 76 (96)
Q Consensus 64 -~v~l~~C~~~~~~ 76 (96)
+=++..|+..+..
T Consensus 98 ~rGVLiScqs~~~~ 111 (125)
T PF08854_consen 98 GRGVLISCQSDDDE 111 (125)
T ss_dssp -BEEEEEEE-SSTT
T ss_pred cceEEEEeccCCcc
Confidence 6688999876543
No 23
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=32.46 E-value=90 Score=24.42 Aligned_cols=75 Identities=21% Similarity=0.328 Sum_probs=43.9
Q ss_pred CchHHHHHHHHcCC-----cCchhchhccCcCC-CCCCCCcccceeEEEeecCCCceeeeeCCCCeEEEEcCCCCC-CCc
Q psy1795 5 DVTSRKELRRNLGC-----KSFKWYLDNIYPEL-FIPGDAVASGDRRLIFHGTSKKCLAISTNKLKLTMQDCDEER-SNQ 77 (96)
Q Consensus 5 dis~r~~LR~~L~C-----KsF~WyL~nVyPe~-~~p~~~~~~G~i~~i~~~~~~~CL~~~~~~~~v~l~~C~~~~-~~Q 77 (96)
+-..|++|.+-|++ .+-.=.|.|+||.. .+|. .|+...+.....+ ....-.+-.+.+..|+... ..+
T Consensus 219 ~~~~r~~L~~~Lng~~~~~~~~~v~l~~l~P~~l~v~~----~g~a~~~~~l~~~--~~~~~~nv~l~l~~~~~~~~~~~ 292 (422)
T PF12166_consen 219 DNEQRKQLAQMLNGTSSSNSNNSVTLPNLYPKFLRVPN----SGEARPVSQLYPN--DENSYRNVSLILNRSNNCSSNQE 292 (422)
T ss_pred CHHHHHHHHHHHhccccCCCCceEEecccccceEEcCC----CCccccccccccc--cccceeeeEEEEeccCCCCCcce
Confidence 45789999999999 66666889999995 4665 2333222211111 1111123356677777654 456
Q ss_pred ceEeeecC
Q psy1795 78 RWDFENYE 85 (96)
Q Consensus 78 ~W~~~~~~ 85 (96)
.|.++...
T Consensus 293 wW~v~~~~ 300 (422)
T PF12166_consen 293 WWSVNETC 300 (422)
T ss_pred EEEEECCC
Confidence 68777544
No 24
>PF10461 Peptidase_S68: Peptidase S68; InterPro: IPR019502 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains serine peptidases belonging to MEROPS peptidase family S68 (PIDD auto-processing protein, clan S-). These proteins are known as Pidd (short for p53-induced protein with a death domain) proteins. Pidd forms a complex with Raidd and procaspase-2 that is known as the 'Piddosome'. The Piddosome forms when DNA damage occurs and either activates NF-kappaB, leading to cell survival, or caspase-2, which leads to apoptosis.
Probab=31.86 E-value=13 Score=19.75 Aligned_cols=7 Identities=43% Similarity=1.298 Sum_probs=5.5
Q ss_pred Cchhchh
Q psy1795 20 SFKWYLD 26 (96)
Q Consensus 20 sF~WyL~ 26 (96)
-|+|||-
T Consensus 25 hFSWFlv 31 (35)
T PF10461_consen 25 HFSWFLV 31 (35)
T ss_pred ccEEEEE
Confidence 3999984
No 25
>PF13941 MutL: MutL protein
Probab=29.53 E-value=24 Score=28.65 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=27.9
Q ss_pred CCCchHHHHHHHHcCCcCchhch-hccCcCCCCCC
Q psy1795 3 FGDVTSRKELRRNLGCKSFKWYL-DNIYPELFIPG 36 (96)
Q Consensus 3 ~Gdis~r~~LR~~L~CKsF~WyL-~nVyPe~~~p~ 36 (96)
.|+...+-++++-|....-..|+ +||+|++....
T Consensus 161 AGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln 195 (457)
T PF13941_consen 161 AGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLN 195 (457)
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcC
Confidence 58999999999999966666666 99999986544
No 26
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=26.88 E-value=20 Score=23.38 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=11.2
Q ss_pred cCCcCchhchhcc
Q psy1795 16 LGCKSFKWYLDNI 28 (96)
Q Consensus 16 L~CKsF~WyL~nV 28 (96)
++||.|.||-..+
T Consensus 6 ~~c~d~s~~~~~~ 18 (103)
T cd08684 6 LKCKDLSWPSSCG 18 (103)
T ss_pred EEecccccccccC
Confidence 6899999998766
No 27
>PF05595 DUF771: Domain of unknown function (DUF771) ; InterPro: IPR008489 This entry is represented by Bacteriophage bIL285, Orf7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of uncharacterised ORFs found in Bacteriophage and Lactococcus lactis.
Probab=26.59 E-value=38 Score=21.14 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCcCchhchhccCcCCCCC
Q psy1795 8 SRKELRRNLGCKSFKWYLDNIYPELFIP 35 (96)
Q Consensus 8 ~r~~LR~~L~CKsF~WyL~nVyPe~~~p 35 (96)
...+|++++ |+|=.|..+||.-.-..|
T Consensus 25 ~~~dl~k~~-~~s~~wi~~~il~~P~f~ 51 (91)
T PF05595_consen 25 DMKDLRKRT-GKSREWIKENILYNPRFR 51 (91)
T ss_pred eHHHHHHHH-CCCHHHHHHHcccCcchh
Confidence 567899999 699999999996543333
No 28
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=25.01 E-value=23 Score=23.09 Aligned_cols=17 Identities=24% Similarity=0.512 Sum_probs=14.5
Q ss_pred HcCCcCchhchhccCcC
Q psy1795 15 NLGCKSFKWYLDNIYPE 31 (96)
Q Consensus 15 ~L~CKsF~WyL~nVyPe 31 (96)
+|+|--|.||+..-|+.
T Consensus 19 ~l~C~~~~~~~~~~~~~ 35 (104)
T cd05896 19 RIKCALFYGYIRTNYSM 35 (104)
T ss_pred EEECCCccccccccccc
Confidence 57899999999888874
No 29
>PF15062 ARL6IP6: Haemopoietic lineage transmembrane helix
Probab=23.33 E-value=22 Score=22.56 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=13.6
Q ss_pred HcCCcCchhch---hccCcCCCCCC
Q psy1795 15 NLGCKSFKWYL---DNIYPELFIPG 36 (96)
Q Consensus 15 ~L~CKsF~WyL---~nVyPe~~~p~ 36 (96)
-+-|-+|.|++ +..-|-+++|.
T Consensus 33 Gllv~~Ft~~ivYlDS~~PGv~Ppt 57 (85)
T PF15062_consen 33 GLLVCSFTWTIVYLDSSEPGVNPPT 57 (85)
T ss_pred HHHHHHhhheeEEecccCCCCCCCC
Confidence 35689999987 33334444444
Done!