RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1795
(96 letters)
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest of
all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity for
glycosylation sites on acceptor proteins.
Length = 299
Score = 58.8 bits (143), Expect = 1e-11
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 2 DFGDVTSRKELRRNLGCKSFKWYLDNIY 29
D+GD++ RK LR L CKSFKWYL+N+Y
Sbjct: 272 DYGDLSERKALRERLKCKSFKWYLENVY 299
>gnl|CDD|216044 pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.
Length = 124
Score = 39.4 bits (92), Expect = 3e-05
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 41 SGDRRLIFHGTSKKCLAISTNK--LKLTMQDCDEERSNQRWDFENY 84
+GD + +G S CL +S K+ + C+ NQRWD++
Sbjct: 43 TGDGTIRSNGNSNLCLDVSGGGNGSKVVLWPCNGGSGNQRWDYDGD 88
>gnl|CDD|214672 smart00458, RICIN, Ricin-type beta-trefoil. Carbohydrate-binding
domain formed from presumed gene triplication.
Length = 118
Score = 36.3 bits (84), Expect = 3e-04
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 47 IFHGTSKKCLAISTNKLKLTMQDCDEERSNQRWDFEN 83
I G + KCL ++ NK + + DC NQ W +
Sbjct: 1 IISGNTGKCLDVNGNKNPVGLFDCHGTGGNQLWKLTS 37
Score = 35.2 bits (81), Expect = 0.001
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 47 IFHGTSKKCLAISTNKL-KLTMQDCDEERSNQRWDFEN 83
I + CL + N +T+ CD NQ W+
Sbjct: 41 IRIKDTDLCLTANGNTGSTVTLYSCDGTNDNQYWEVNK 78
>gnl|CDD|238092 cd00161, RICIN, Ricin-type beta-trefoil; Carbohydrate-binding
domain formed from presumed gene triplication. The
domain is found in a variety of molecules serving
diverse functions such as enzymatic activity,
inhibitory toxicity and signal transduction. Highly
specific ligand binding occurs on exposed surfaces of
the compact domain sturcture.
Length = 124
Score = 36.3 bits (84), Expect = 4e-04
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 43 DRRLIFHGTSKKCLAISTNKL--KLTMQDCDEERSNQRWDFEN 83
I +S CL + + K+ + C NQRW F
Sbjct: 42 SDGTIRIKSSNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNK 84
Score = 33.6 bits (77), Expect = 0.004
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 47 IFHGTSKKCLAI---STNKLKLTMQDCDEERSNQRWDF 81
I + S KCL + +TN L + CD NQ+W F
Sbjct: 88 IRNLKSGKCLDVKGGNTNGTNLILWTCD-GGPNQKWKF 124
Score = 29.4 bits (66), Expect = 0.14
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 45 RLIFHGTSKKCLAISTNKL--KLTMQDCDEERSNQRWDFEN 83
+ + CL ++ + + C +NQ+W +
Sbjct: 2 TIRNVNNTGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTS 42
>gnl|CDD|236005 PRK07376, PRK07376, NAD(P)H-quinone oxidoreductase subunit F;
Validated.
Length = 673
Score = 31.1 bits (71), Expect = 0.057
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 6/25 (24%)
Query: 22 KWYLDNIYPELFIPGDAVASGDRRL 46
KWYLD+IY +LF+ G RRL
Sbjct: 596 KWYLDDIYEKLFV------KGSRRL 614
>gnl|CDD|197746 smart00472, MIR, Domain in ryanodine and inositol trisphosphate
receptors and protein O-mannosyltransferases.
Length = 57
Score = 26.5 bits (59), Expect = 0.83
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 36 GDAVASGDRRLIFHGTSKKCLAISTNKLKL--------TMQDCDEERSNQRWDFE 82
G V GD + H T+ + L KL T +N W E
Sbjct: 1 GGFVRWGDVVRLRHVTTGRYLHSHDEKLPPWGDGQQEVTGYGNPAIDANTLWLIE 55
>gnl|CDD|226012 COG3481, COG3481, Predicted HD-superfamily hydrolase [General
function prediction only].
Length = 287
Score = 26.2 bits (58), Expect = 2.5
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 60 TNKLKLTMQDCDEERSNQRWDFENYEADKI 89
+KLKLT+QD E + WD + +
Sbjct: 20 KDKLKLTLQDKTGEIEAKLWDALKNDEEAF 49
>gnl|CDD|176736 cd08321, Pyrin_ASC-like, Pyrin Death Domain found in ASC. Pyrin
Death Domain found in ASC (Apoptosis-associated
speck-like protein containing a CARD) and similar
proteins. ASC is an adaptor molecule that functions in
the assembly of the 'inflammasome', a multiprotein
platform, which is responsible for caspase-1 activation
and regulation of IL-1beta maturation. ASC contains two
domains from the Death Domain (DD) superfamily, an
N-terminal pyrin-like domain and a C-terminal Caspase
activation and recruitment domain (CARD). Through these
2 domains, ASC serves as an adaptor for inflammasome
integrity and oligomerizes to form supramolecular
assemblies. Other members of this subfamily are
associated with ATPase domains and their function
remains unknown. In general, Pyrin is a subfamily of
the DD superfamily and functions in several signaling
pathways. DDs are protein-protein interaction domains
found in a variety of domain architectures. Their
common feature is that they form homodimers by
self-association or heterodimers by associating with
other members of the DD superfamily including CARD and
Death Effector Domain (DED). They serve as adaptors in
signaling pathways and can recruit other proteins into
signaling complexes.
Length = 82
Score = 24.1 bits (53), Expect = 7.9
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 19 KSFKWYLDNIYPELF--IPGDAVASGDR 44
K FKW L +I E F IP + + DR
Sbjct: 17 KKFKWKLRDIPLEGFPRIPRGELENADR 44
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,783,884
Number of extensions: 379127
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 14
Length of query: 96
Length of database: 10,937,602
Length adjustment: 63
Effective length of query: 33
Effective length of database: 8,143,300
Effective search space: 268728900
Effective search space used: 268728900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)