RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1795
(96 letters)
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 75.2 bits (184), Expect = 1e-17
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 37/117 (31%)
Query: 2 DFGDVTSRKELRRNLGCKSFKWYLDNIYPELFIPGDAVASGDRRLIF------------- 48
D+GD++SR LRR L CK F WYL+NIYP+ IP + G+ R +
Sbjct: 305 DYGDISSRLGLRRKLQCKPFSWYLENIYPDSQIPRHYFSLGEIRNVETNQCLDNMARKEN 364
Query: 49 --------HGTSK----------------KCLAISTNKLKLTMQDCDEERSNQRWDF 81
HG CL +S +TM C + NQ W++
Sbjct: 365 EKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNGPVTMLKCHHLKGNQLWEY 421
Score = 45.9 bits (108), Expect = 2e-07
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 43 DRRLIFHGTSKKCL--AISTNKLKLTMQDCDEERSNQRWDFENYEADKI 89
+ + H S +CL A + +++DC RS Q+W N +I
Sbjct: 424 VKLTLQHVNSNQCLDKATEEDSQVPSIRDCTGSRS-QQWLLRNVTLPEI 471
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 70.2 bits (171), Expect = 6e-16
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 2 DFGDVTSRKELRRNLGCKSFKWYLDNIYPELFIPGDA-VASGDRRLIFHGTSKKCLAIST 60
+G++ SR ELR+ L CK FKWYL+N+YPEL +P +A G + GT+
Sbjct: 337 PYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGA---LQQGTNCLDTLGHF 393
Query: 61 NKLKLTMQDCDEERSNQRWDF 81
+ + +C NQ W
Sbjct: 394 ADGVVGVYECHNAGGNQEWAL 414
Score = 41.3 bits (96), Expect = 8e-06
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 22/92 (23%)
Query: 7 TSRKELRRNLGCKSFKWYLDNIYPEL-------------FIPGDAVASGDRRLIFHGTSK 53
T K ++ C + +L I G+ + H S
Sbjct: 415 TKEKSVKHMDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGN-------SKLRHVGSN 467
Query: 54 KCL-AISTNKLKLTMQDCDEERSNQRWDFENY 84
CL + + L+++ C S Q+W F
Sbjct: 468 LCLDSRTAKSGGLSVEVCGPALS-QQWKFTLN 498
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 54.5 bits (130), Expect = 2e-10
Identities = 29/135 (21%), Positives = 42/135 (31%), Gaps = 54/135 (40%)
Query: 2 DFGDVTSRKELRRNLGCKSFKWYLDNIYPELFIPGDA-----VASGD------------- 43
GDV +K+LR +L CKSFKW++ I +L A G+
Sbjct: 383 SAGDVAVQKKLRSSLNCKSFKWFMTKIAWDLPKFYPPVEPPAAAWGEIRNVGTGLCADTK 442
Query: 44 --------------------------------RRLIFHG----TSKKCLAISTNKLKLTM 67
R I G T K C ++ +T+
Sbjct: 443 HGALGSPLRLEGCVRGRGEAAWNNMQVFTFTWREDIRPGDPQHTKKFCFDAISHTSPVTL 502
Query: 68 QDCDEERSNQRWDFE 82
DC + NQ W +
Sbjct: 503 YDCHSMKGNQLWKYR 517
Score = 53.3 bits (127), Expect = 5e-10
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 45 RLIFHGTSKKCLAISTNKLKLTMQDCDEERSNQRWDFENYEADKI 89
+ ++H S C+ S + ++ M C+ Q+W FE+ + +
Sbjct: 520 KTLYHPVSGSCMDCSESDHRIFMNTCNPSSLTQQWLFEHTNSTVL 564
>1dqg_A Mannose receptor; beta trefoil, multilectin receptor, pituitary
hormones, sulfated carbohydrate, sugar binding protein;
1.70A {Mus musculus} SCOP: b.42.2.2 PDB: 1dqo_A*
1fwu_A* 1fwv_A*
Length = 135
Score = 36.2 bits (83), Expect = 3e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 44 RRLIFHGTSKKCLAI--STNKLKLTMQDCDEERSNQRWDFEN 83
I K CL + T+ +T+ CD + Q+W+ +N
Sbjct: 44 DSQIMSVAFKLCLGVPSKTDWASVTLYACDSKSEYQKWECKN 85
Score = 32.0 bits (72), Expect = 0.011
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 46 LIFHGTSKKCLAISTNKLKLTMQDCDEERSNQRW 79
LI++ K+C+ + + C+ E +Q++
Sbjct: 7 LIYNEDHKRCVDALSAI-SVQTATCNPEAESQKF 39
>1m2t_B Mistletoe lectin I B chain; ribosome inactivation, ribosome
inhibitor, hydrolase; HET: NAG FUC ADE; 1.89A {Viscum
album} SCOP: b.42.2.1 b.42.2.1 PDB: 2r9k_B* 3d7w_B*
3cef_B* 1sz6_B* 1pum_B* 1puu_B* 2rg9_B* 3o5w_B* 1onk_B*
1oql_B* 1tfm_B* 1pc8_B* 1yf8_B* 1ce7_B* 2mll_B*
Length = 263
Score = 33.2 bits (75), Expect = 0.005
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 43 DRRLIFHGTSKKCLAI--STNKLKLTMQDCDEERSNQRWDFEN 83
D + +CL + + + C S QRW F N
Sbjct: 179 DGSIRPKQLQSQCLTNGRDSISTVINIVSCSAGSSGQRWVFTN 221
>2vlc_A Cinnamomin, type 2 ribosome-inactivating protein cinnamomin III;
ribosome inhibiting proteins, toxin, hydrolase, plant
defense; HET: AS5 BMA XYP XYS; 2.95A {Cinnamomum
camphora}
Length = 570
Score = 32.9 bits (74), Expect = 0.008
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 43 DRRLIFHGTSKKCLAI---STNKLKLTMQDCDEERSNQRWDFEN 83
D + H +CL + + + C QRW F N
Sbjct: 485 DGSIRPHQDRDRCLTSTDNHSQGSIIIISSCSPGSEGQRWVFMN 528
Score = 24.8 bits (53), Expect = 6.0
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 50 GTSKKCLAISTNKLKLTMQDCDEERSNQRWDF 81
G + C+ N + + +C+ ++ Q+W
Sbjct: 453 GFNDLCM--QANGDAMWVVECESSKAEQKWAL 482
>2aai_B Ricin (B chain); glycosidase; HET: GAL BGC NDG NAG BMA MAN; 2.50A
{Ricinus communis} SCOP: b.42.2.1 b.42.2.1 PDB: 3rti_B*
3rtj_B* 1rzo_B*
Length = 262
Score = 31.9 bits (72), Expect = 0.016
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 43 DRRLIFHGTSKKCLAI--STNKLKLTMQDCDEERSNQRWDFEN 83
D + CL + + + + C S QRW F+N
Sbjct: 178 DGSIRPQQNRDNCLTSDSNIRETVVKILSCGPASSGQRWMFKN 220
Score = 24.2 bits (52), Expect = 8.0
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 57 AISTNKLKLTMQDCDEERSNQRWDF 81
+ N ++ ++DC E++ Q+W
Sbjct: 151 CLQANSGQVWIEDCSSEKAEQQWAL 175
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.023
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 21/100 (21%)
Query: 10 KELRRNLGCKSFK--W-----YLDNIYPELFIPGDAVASGDRRLIFHGTSKKCLAISTNK 62
+L + K+ + W + + Y F D V + L H +K I N
Sbjct: 1633 MDLYKT--SKAAQDVWNRADNHFKDTYG--FSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 63 LKLTMQDCDEERSNQRWDFEN---------YEADKISLLS 93
+ + + + F+ + ++K LLS
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-GLLS 1727
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination,
pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria
echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A*
2z49_A*
Length = 432
Score = 31.3 bits (70), Expect = 0.029
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 47 IFHGTSKKCLAI--STNKLKLTMQDCDEERSNQRWDFENYEAD 87
I + S CL + S + + CD+ +Q W N +
Sbjct: 199 IVNAKSGMCLDVEGSDGSGNVGIYRCDD-LRDQMWSRPNAYCN 240
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.22
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 9 RKELRRNLGCKSFKWYLDNIYPELFI 34
++ L++ L S K Y D+ P L I
Sbjct: 19 KQALKK-LQ-ASLKLYADDSAPALAI 42
>1abr_B Abrin-A; glycosidase/carbohydrate complex, lectin, lectin
(agglutinin), glycoprotein, plant SEED protein, plant
toxin; HET: NDG NGZ MAN BMA BGC; 2.14A {Abrus
precatorius} SCOP: b.42.2.1 b.42.2.1 PDB: 2zr1_B*
2q3n_B*
Length = 267
Score = 27.4 bits (60), Expect = 0.67
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 49 HGTSKKCLAI--STNKLKLTMQDCDEERSNQRWDFEN 83
+ CL + + C ++QRW F+N
Sbjct: 189 VQNTNNCLTSKDHKQGSTILLMGCSNGWASQRWVFKN 225
>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble
monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A
{Vibrio cholerae} PDB: 3o44_A
Length = 721
Score = 26.7 bits (58), Expect = 1.5
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 31 ELFIPGDAVASGDRRLIFHGTSKKCLAISTNKLKLTMQDCDEERSNQRWDFENYE 85
+F G V L + +C+ + +LT CD ++S Q + ++
Sbjct: 458 PVFTGGRPVN-----LQLASFNNRCIQVDAQG-RLTANMCDSQQSAQSFIYDQLG 506
>3rko_L NADH-quinone oxidoreductase subunit L; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 613
Score = 26.5 bits (59), Expect = 1.5
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 22 KWYLDNIYPELFI-PGDAVASG-DRRLI 47
W D +Y ++F+ P +A R +
Sbjct: 538 AWGFDWLYDKVFVKPFLGIAWLLKRDPL 565
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 25.4 bits (56), Expect = 2.4
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 35 PGDAVASGDRRLIFHGTSKKCLAISTNKLKLTMQDCDEE 73
D V+ G R + K L+ + K L+M+D D+E
Sbjct: 57 VADVVSKGQRVKV------KVLSFTGTKTSLSMKDVDQE 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 5.5
Identities = 9/89 (10%), Positives = 27/89 (30%), Gaps = 24/89 (26%)
Query: 19 KSFKWYLDNIYPELFIPGDAVASGDRRLIFHGTSKKCLAISTNKLKLTMQDCDEERSNQR 78
K + +IY EL + + + R ++ + + ++
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIV-------------DHYNIPKTFDSDDLIPPY 468
Query: 79 WD--FENY---------EADKISLLSDLL 96
D F ++ ++++L +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Score = 24.4 bits (52), Expect = 8.3
Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 32/99 (32%)
Query: 9 RKELR-RNLGCKSFKWYLDNIY--PELFIPGD-----------AVASGDRR---LIFHG- 50
+ E R ++ + + D +Y ++F + R ++ G
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 51 --TSKKCLAIST---NKLK---------LTMQDCDEERS 75
+ K +A+ K++ L +++C+ +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
>3c9z_A Agglutinin II, SNA-II; beta-trefoil, ricin-B domain, glycosylation,
glycoprotein, L sugar binding protein, plant protein;
HET: NAG FUC SO4; 1.35A {Sambucus nigra} PDB: 3ca0_A*
3ca1_A* 3ca3_A* 3ca4_A* 3ca5_A* 3ca6_A* 3cah_A* 1hwm_B*
1hwn_B* 1hwo_B* 1hwp_B*
Length = 258
Score = 24.2 bits (52), Expect = 8.2
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 51 TSKKCLAISTNKLKLTMQDCDEERSNQRWDFENYE 85
+ CL + + M+DC+ Q+W
Sbjct: 139 YKEMCLQSNGENNGVWMEDCEATSLQQQWALYGDR 173
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP:
b.42.6.1
Length = 187
Score = 24.1 bits (52), Expect = 8.3
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 8/68 (11%)
Query: 23 WYLDNIYPELFIPGDAVASGDRRLIFHGTSKKCLAISTNKLKLTMQ--------DCDEER 74
W + GDA+ GD+ + H T+ L L+ Q E
Sbjct: 53 WQIFPALNAKCNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESD 112
Query: 75 SNQRWDFE 82
+ W
Sbjct: 113 TGDDWTVI 120
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Length = 308
Score = 24.3 bits (52), Expect = 9.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 30 PELFIPGDAVASGDRRLIFHGT 51
L +PGD + + + HGT
Sbjct: 39 KHLVVPGDTITTDTGFMRGHGT 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,459,553
Number of extensions: 70356
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 30
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)