RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1795
(96 letters)
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 61.9 bits (149), Expect = 2e-13
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 2 DFGDVTSRKELRRNLGCKSFKWYLDNIYPE 31
D+GD++SR LRR L CK F WYL+NIYP+
Sbjct: 298 DYGDISSRLGLRRKLQCKPFSWYLENIYPD 327
>d1xhba1 b.42.2.1 (A:423-553) Polypeptide
N-acetylgalactosaminyltransferase 1, C-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 131
Score = 35.6 bits (81), Expect = 2e-04
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 42 GDRRLIFHGTSKKCLAI--STNKLKLTMQDCDEERSNQRWDFEN 83
+ + H S +CL + +++DC +Q+W N
Sbjct: 88 PVKLTLQHVNSNQCLDKATEEDSQVPSIRDCTG-SRSQQWLLRN 130
>d1ggpb2 b.42.2.1 (B:141-267) Plant cytotoxin B-chain (lectin)
{Mongolian snake-gourd (Trichosanthes kirilowii),
Lectin 1 [TaxId: 3677]}
Length = 128
Score = 29.8 bits (66), Expect = 0.028
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 50 GTSKKCLAISTNKLKLTMQDCDEERSNQRWDFEN 83
G+++ C+ L M +C ++ Q+W
Sbjct: 11 GSAQLCMQAGNGPANLWMSECRAGKAEQQWALLT 44
>d1hwmb2 b.42.2.1 (B:136-266) Plant cytotoxin B-chain (lectin)
{Sambucus ebulus, ebulin [TaxId: 28503]}
Length = 131
Score = 26.4 bits (57), Expect = 0.49
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 50 GTSKKCLAISTNKLKLTMQDCDEERSNQRWDFEN 83
G ++ CL + + M+DCD Q+W +
Sbjct: 11 GYNEMCLQANGENNNVWMEDCDVTSVQQQWALFD 44
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 26.5 bits (58), Expect = 0.50
Identities = 1/31 (3%), Positives = 6/31 (19%), Gaps = 1/31 (3%)
Query: 2 DFGDVTSRKELRRNLGCKSFKWYLDNIYPEL 32
+ + + + + L
Sbjct: 296 VREGLRTCQRRPA-FNFMDEMAWAATYHVLL 325
>d1qxma1 b.42.2.1 (A:4-148) Hemagglutinin component Ha1 {Clostridium
botulinum D phage [TaxId: 29342]}
Length = 145
Score = 25.8 bits (56), Expect = 0.79
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 23 WYLDNIYPELFIPGDAVASGDRRLIFHGTSKKCLAISTNKLKLTMQDCDEERSNQRWDFE 82
N + + S + + + L + L + SNQ + F
Sbjct: 80 KTDTNGDNQYWYLLQNYISRNVIIRNYMNPNLVLQYN-IDDTLMVSTQTSS-SNQFFKFS 137
Query: 83 NY 84
N
Sbjct: 138 NC 139
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10)
{Caenorhabditis elegans [TaxId: 6239]}
Length = 178
Score = 25.7 bits (56), Expect = 0.87
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 23 WYLDNIYPELFIPGDAVASGDRRLIFHGTSKKCLAISTNKLKLTMQD 69
W + GDA+ GD+ + H T+ L L+ Q
Sbjct: 53 WQIFPALNAKCNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQH 99
>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 366
Score = 25.2 bits (54), Expect = 1.3
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 17 GCKSFKWYLDNIYPELFIPGDAVASGDRRLIFHGTSKKCLAISTNKLK 64
+ L Y + I + + L TS+ I N +
Sbjct: 306 KLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYII 353
>d2aaib2 b.42.2.1 (B:136-262) Plant cytotoxin B-chain (lectin)
{Castor bean (Ricinus communis), Ricin [TaxId: 3988]}
Length = 127
Score = 24.9 bits (53), Expect = 1.6
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 50 GTSKKCLAISTNKLKLTMQDCDEERSNQRW 79
G CL N ++ ++DC E++ Q+W
Sbjct: 11 GLYGLCL--QANSGQVWIEDCSSEKAEQQW 38
>d1dqga_ b.42.2.2 (A:) Mannose receptor {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 134
Score = 24.5 bits (52), Expect = 1.9
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 43 DRRLIFHGTSKKCLAISTNKL--KLTMQDCDEERSNQRWDFEN 83
I K CL + + +T+ CD + Q+W+ +N
Sbjct: 42 SDSQIMSVAFKLCLGVPSKTDWASVTLYACDSKSEYQKWECKN 84
>d1m2tb2 b.42.2.1 (B:385-510) Plant cytotoxin B-chain (lectin)
{European mistletoe (Viscum album) [TaxId: 3972]}
Length = 126
Score = 24.4 bits (52), Expect = 2.5
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 50 GTSKKCLAISTNKLKLTMQDCDEERSNQRWDF 81
G C+ + + ++ C + NQRW
Sbjct: 10 GFRDLCM--ESAGGSVYVETCTAGQENQRWAL 39
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 217
Score = 24.3 bits (52), Expect = 2.8
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 42 GDRRLIFHGTSKKCLAISTNKLKLTMQDCDEERSNQRWDFENYEADKIS 90
+R L++HG+ L + + + + Y AD S
Sbjct: 57 PNRMLLWHGSRLSNWV-GILSHGLRVAPPEAPITGYMFGKGIYFADMSS 104
>d1abrb2 b.42.2.1 (B:141-267) Plant cytotoxin B-chain (lectin)
{Abrus precatorius [TaxId: 3816]}
Length = 127
Score = 24.1 bits (51), Expect = 3.0
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 50 GTSKKCLAISTNKLKLTMQDCDEERSNQRW 79
G S C+ + M DCD + Q+W
Sbjct: 11 GYSDLCM--QAQGSNVWMADCDSNKKEQQW 38
>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 189
Score = 23.8 bits (51), Expect = 3.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 42 GDRRLIFHGTSKK 54
G RR FHGTS +
Sbjct: 165 GVRRYGFHGTSHR 177
>d1g99a1 c.55.1.2 (A:1-197) Acetate kinase {Archaeon Methanosarcina
thermophila [TaxId: 2210]}
Length = 197
Score = 23.8 bits (51), Expect = 3.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 42 GDRRLIFHGTSKK 54
G R+ FHGTS K
Sbjct: 173 GVRKYGFHGTSHK 185
>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima
[TaxId: 2336]}
Length = 172
Score = 23.9 bits (52), Expect = 3.7
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 44 RRLIFHGTSKK 54
R+ IFH ++K
Sbjct: 149 RKSIFHALNQK 159
>d1s2xa_ a.47.3.1 (A:) Cag-Z {Helicobacter pylori [TaxId: 210]}
Length = 180
Score = 23.1 bits (49), Expect = 7.1
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 53 KKCLAISTNKLKLTMQDCDEERSNQRWDFENYEADKISLLSDLL 96
+K A ST K +LT+ + E S+ +F N+ D+++ +SDL+
Sbjct: 88 EKTFAESTIKNELTLGEFVAEISD---NFNNFTCDEVARISDLV 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 363,893
Number of extensions: 13983
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 18
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)