RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17952
(804 letters)
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 572 bits (1477), Expect = 0.0
Identities = 242/380 (63%), Positives = 268/380 (70%), Gaps = 74/380 (19%)
Query: 148 DPEIAELFDKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWA 207
DPEIAELF K+DPEK+F DLREIGHGSFGAVY+AR + + E+VAIKKMSY GKQ EKW
Sbjct: 1 DPEIAELFSKDDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQ 60
Query: 208 DILKEIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMG 267
DI+KE+RFL+QL+HPNTIEY+GCYLR+HTAWLVMEYCLGSASDI+EVH
Sbjct: 61 DIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCLGSASDILEVH------------ 108
Query: 268 NRLQQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 327
K+PL+E EIAAIC G L+GL YLHS RIHRD+KAGNIL
Sbjct: 109 ---------------------KKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNIL 147
Query: 328 LTETGTVKLADFGSASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
LTE GTVKLADFGSAS+ PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL
Sbjct: 148 LTEPGTVKLADFGSASLVSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 207
Query: 388 AERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHI 447
AERKPP FNMNAMSALYHI
Sbjct: 208 -----------------------------------------AERKPPLFNMNAMSALYHI 226
Query: 448 AQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRT 507
AQND+P L S+DWSD F +FV SCL K P DRPSS LL H V R R P+V++DLI+RT
Sbjct: 227 AQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHRFVLRERPPTVIIDLIQRT 286
Query: 508 KAAVRDLDNLNYRKMKKILM 527
K AVR+LDNL YRKMKKIL
Sbjct: 287 KDAVRELDNLQYRKMKKILF 306
Score = 295 bits (756), Expect = 1e-93
Identities = 116/137 (84%), Positives = 126/137 (91%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
L+QL+HPNTIEY+GCYLR+HTAWLVMEYCLGSASDI+EVHK+PL+E EIAAIC G L+
Sbjct: 67 RFLQQLRHPNTIEYKGCYLREHTAWLVMEYCLGSASDILEVHKKPLQEVEIAAICHGALQ 126
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPYWMAPEVILAM 125
GL YLHS RIHRD+KAGNILLTE GTVKLADFGSAS+ PANSFVGTPYWMAPEVILAM
Sbjct: 127 GLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPYWMAPEVILAM 186
Query: 126 DEGQYDGKVDVWSLGIT 142
DEGQYDGKVDVWSLGIT
Sbjct: 187 DEGQYDGKVDVWSLGIT 203
Score = 130 bits (329), Expect = 2e-33
Identities = 53/65 (81%), Positives = 58/65 (89%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LVMEYCLGSASDI+EVHK+PL+E EIAAIC G L+GL YLHS RIHRD+KAGNILLTE
Sbjct: 92 LVMEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEP 151
Query: 676 GTVKL 680
GTVKL
Sbjct: 152 GTVKL 156
>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 3.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 3 (TAO3) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO3 is also known as JIK (JNK inhibitory kinase) or KFC
(kinase from chicken). It specifically activates c-Jun
N-terminal kinase (JNK), presumably by phosphorylating
and activating MKK4/MKK7. In Saccharomyces cerevisiae,
TAO3 is a component of the RAM (regulation of Ace2p
activity and cellular morphogenesis) signaling pathway.
TAO3 is upregulated in retinal ganglion cells after
axotomy, and may play a role in apoptosis.
Length = 313
Score = 480 bits (1237), Expect = e-165
Identities = 231/383 (60%), Positives = 262/383 (68%), Gaps = 74/383 (19%)
Query: 144 GSLKDPEIAELFDKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCA 203
G +KDPEIA+LF K+DPE+IF L EIGHGSFGAVY+A + E+VA+KKMSY GKQ
Sbjct: 3 GVVKDPEIADLFYKDDPEEIFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTN 62
Query: 204 EKWADILKEIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHV 263
EKW DI+KE++FL+QLKHPNTIEY+GCYL++HTAWLVMEYCLGSASD++EVH
Sbjct: 63 EKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCLGSASDLLEVH-------- 114
Query: 264 EGMGNRLQQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKA 323
K+PL+E EIAAI G L+GL YLHS IHRD+KA
Sbjct: 115 -------------------------KKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKA 149
Query: 324 GNILLTETGTVKLADFGSASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 383
GNILLTE G VKLADFGSAS PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT
Sbjct: 150 GNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 209
Query: 384 CIELAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSA 443
CIEL AERKPP FNMNAMSA
Sbjct: 210 CIEL-----------------------------------------AERKPPLFNMNAMSA 228
Query: 444 LYHIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDL 503
LYHIAQND+P LQS++W+D+F FV CL K P +RP+S LL HD V R R VL+DL
Sbjct: 229 LYHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELLRHDFVRRDRPARVLIDL 288
Query: 504 IRRTKAAVRDLDNLNYRKMKKIL 526
I+RTK AVR+LDNL YRKMKKIL
Sbjct: 289 IQRTKDAVRELDNLQYRKMKKIL 311
Score = 254 bits (650), Expect = 3e-78
Identities = 112/136 (82%), Positives = 122/136 (89%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
L+QLKHPNTIEY+GCYL++HTAWLVMEYCLGSASD++EVHK+PL+E EIAAI G L+G
Sbjct: 74 FLQQLKHPNTIEYKGCYLKEHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQG 133
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPYWMAPEVILAMD 126
L YLHS IHRD+KAGNILLTE G VKLADFGSAS PANSFVGTPYWMAPEVILAMD
Sbjct: 134 LAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPEVILAMD 193
Query: 127 EGQYDGKVDVWSLGIT 142
EGQYDGKVDVWSLGIT
Sbjct: 194 EGQYDGKVDVWSLGIT 209
Score = 106 bits (266), Expect = 3e-25
Identities = 54/81 (66%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LVMEYCLGSASD++EVHK+PL+E EIAAI G L+GL YLHS IHRD+KAGNILLTE
Sbjct: 98 LVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEP 157
Query: 676 GTVKLDTPDEQAGNDSSKSNS 696
G VKL D + + SS +NS
Sbjct: 158 GQVKL--ADFGSASKSSPANS 176
>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 1.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 1 (TAO1) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO1 is sometimes referred to as prostate-derived
sterile 20-like kinase 2 (PSK2). TAO1 activates the p38
MAPK through direct interaction with and activation of
MEK3. TAO1 is highly expressed in the brain and may play
a role in neuronal apoptosis. TAO1 interacts with the
checkpoint proteins BubR1 and Mad2, and plays an
important role in regulating mitotic progression, which
is required for both chromosome congression and
checkpoint-induced anaphase delay. TAO1 may play a role
in protecting genomic stability.
Length = 317
Score = 473 bits (1219), Expect = e-162
Identities = 238/383 (62%), Positives = 269/383 (70%), Gaps = 74/383 (19%)
Query: 144 GSLKDPEIAELFDKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCA 203
GSLKDPEIAELF KEDPEK+F DLREIGHGSFGAVY+AR + + E+VAIKKMSY GKQ
Sbjct: 7 GSLKDPEIAELFFKEDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSN 66
Query: 204 EKWADILKEIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHV 263
EKW DI+KE++FL+++KHPN+IEY+GCYLR+HTAWLVMEYCLGSASD++EVH
Sbjct: 67 EKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCLGSASDLLEVH-------- 118
Query: 264 EGMGNRLQQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKA 323
K+PL+E EIAAI G L+GL YLHS IHRD+KA
Sbjct: 119 -------------------------KKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKA 153
Query: 324 GNILLTETGTVKLADFGSASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 383
GNILLTE G VKLADFGSASI PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT
Sbjct: 154 GNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 213
Query: 384 CIELAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSA 443
CIEL AERKPP FNMNAMSA
Sbjct: 214 CIEL-----------------------------------------AERKPPLFNMNAMSA 232
Query: 444 LYHIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDL 503
LYHIAQN++P LQS++WSD F +FV SCL K P DRP+S LL H V R R +VL+DL
Sbjct: 233 LYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRERPETVLIDL 292
Query: 504 IRRTKAAVRDLDNLNYRKMKKIL 526
I+RTK AVR+LDNL YRKMKK+L
Sbjct: 293 IQRTKDAVRELDNLQYRKMKKLL 315
Score = 244 bits (624), Expect = 2e-74
Identities = 111/136 (81%), Positives = 123/136 (90%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
L+++KHPN+IEY+GCYLR+HTAWLVMEYCLGSASD++EVHK+PL+E EIAAI G L+G
Sbjct: 78 FLQRIKHPNSIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQG 137
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPYWMAPEVILAMD 126
L YLHS IHRD+KAGNILLTE G VKLADFGSASI PANSFVGTPYWMAPEVILAMD
Sbjct: 138 LAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEVILAMD 197
Query: 127 EGQYDGKVDVWSLGIT 142
EGQYDGKVDVWSLGIT
Sbjct: 198 EGQYDGKVDVWSLGIT 213
Score = 102 bits (256), Expect = 7e-24
Identities = 53/81 (65%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LVMEYCLGSASD++EVHK+PL+E EIAAI G L+GL YLHS IHRD+KAGNILLTE
Sbjct: 102 LVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEP 161
Query: 676 GTVKLDTPDEQAGNDSSKSNS 696
G VKL D + + +S +NS
Sbjct: 162 GQVKL--ADFGSASIASPANS 180
>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 2.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 2 (TAO2) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Human TAO2 is also known as prostate-derived Ste20-like
kinase (PSK) and was identified in a screen for
overexpressed RNAs in prostate cancer. TAO2 activates
both p38 and c-Jun N-terminal kinase (JNK), by
phosphorylating and activating the respective MAP/ERK
kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6
and MKK4/MKK7. TAO2 contains a long C-terminal extension
with autoinhibitory segments. It is activated by the
release of this inhibition and the phosphorylation of
its activation loop serine. TAO2 functions as a
regulator of actin cytoskeletal and microtubule
organization. In addition, it regulates the transforming
growth factor-activated kinase 1 (TAK1), which is a
MAPKKK that plays an essential role in the signaling
pathways of tumor necrosis factor (TNF), interleukin 1
(IL-1), and Toll-like receptor (TLR).
Length = 308
Score = 468 bits (1205), Expect = e-160
Identities = 230/382 (60%), Positives = 263/382 (68%), Gaps = 74/382 (19%)
Query: 148 DPEIAELFDKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWA 207
DP++AELF K+DPEK+F DLREIGHGSFGAVY+AR + + E+VAIKKMSY GKQ EKW
Sbjct: 1 DPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQ 60
Query: 208 DILKEIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMG 267
DI+KE+RFL++L+HPNTI+YRGCYLR+HTAWLVMEYCLGSASD++EVH
Sbjct: 61 DIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVH------------ 108
Query: 268 NRLQQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 327
K+PL+E EIAA+ G L+GL YLHS IHRDVKAGNIL
Sbjct: 109 ---------------------KKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNIL 147
Query: 328 LTETGTVKLADFGSASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
L+E G VKL DFGSASI PAN FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL
Sbjct: 148 LSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 207
Query: 388 AERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHI 447
AERKPP FNMNAMSALYHI
Sbjct: 208 -----------------------------------------AERKPPLFNMNAMSALYHI 226
Query: 448 AQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRT 507
AQN++P LQS WS+ F +FV SCL K P DRP+S LL H V R R P+V++DLI+RT
Sbjct: 227 AQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRERPPTVIMDLIQRT 286
Query: 508 KAAVRDLDNLNYRKMKKILMAD 529
K AVR+LDNL YRKMKKIL +
Sbjct: 287 KDAVRELDNLQYRKMKKILFQE 308
Score = 248 bits (633), Expect = 8e-76
Identities = 109/136 (80%), Positives = 121/136 (88%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
L++L+HPNTI+YRGCYLR+HTAWLVMEYCLGSASD++EVHK+PL+E EIAA+ G L+G
Sbjct: 68 FLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQG 127
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPYWMAPEVILAMD 126
L YLHS IHRDVKAGNILL+E G VKL DFGSASI PAN FVGTPYWMAPEVILAMD
Sbjct: 128 LAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVILAMD 187
Query: 127 EGQYDGKVDVWSLGIT 142
EGQYDGKVDVWSLGIT
Sbjct: 188 EGQYDGKVDVWSLGIT 203
Score = 103 bits (259), Expect = 2e-24
Identities = 48/65 (73%), Positives = 55/65 (84%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LVMEYCLGSASD++EVHK+PL+E EIAA+ G L+GL YLHS IHRDVKAGNILL+E
Sbjct: 92 LVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEP 151
Query: 676 GTVKL 680
G VKL
Sbjct: 152 GLVKL 156
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 312 bits (803), Expect = e-101
Identities = 125/330 (37%), Positives = 162/330 (49%), Gaps = 83/330 (25%)
Query: 163 IFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHP 222
+FE L +IG G FG VY AR + + VAIK + K EK I+ EI+ L++ KHP
Sbjct: 1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK---EKKEKIINEIQILKKCKHP 57
Query: 223 NTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
N ++Y G YL+ W+VME+C GS D+++
Sbjct: 58 NIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTN------------------------- 92
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
+ L E +IA +C +L+GL YLHS G IHRD+KA NILLT G VKL DFG
Sbjct: 93 --------QTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGL 144
Query: 342 ASIK---CPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMN 398
++ N+ VGTPYWMAPEVI + YD K D+WSLGIT IELAE KPPY +
Sbjct: 145 SAQLSDTKARNTMVGTPYWMAPEVI---NGKPYDYKADIWSLGITAIELAEGKPPYSELP 201
Query: 399 AMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSS 458
M AL+ IA N P L++ +
Sbjct: 202 PMKALFKIATNGPPGLRNPEK--------------------------------------- 222
Query: 459 DWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
WSD F F+ CL KNP RP++ +LL H
Sbjct: 223 -WSDEFKDFLKKCLQKNPEKRPTAEQLLKH 251
Score = 205 bits (525), Expect = 7e-61
Identities = 74/158 (46%), Positives = 98/158 (62%), Gaps = 15/158 (9%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLR 65
+L++ KHPN ++Y G YL+ W+VME+C GS D+++ + L E +IA +C +L+
Sbjct: 50 ILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLK 109
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK---CPANSFVGTPYWMAPEVI 122
GL YLHS G IHRD+KA NILLT G VKL DFG ++ N+ VGTPYWMAPEVI
Sbjct: 110 GLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVI 169
Query: 123 LAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDP 160
+ YD K D+WSLGIT EL + + P
Sbjct: 170 ---NGKPYDYKADIWSLGIT--------AIELAEGKPP 196
Score = 101 bits (254), Expect = 6e-24
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 10/94 (10%)
Query: 588 HHHHPVTHLSQHSYNNNNSNYSSLFSPQLVMEYC-LGSASDIIEVHKRPLKEEEIAAICS 646
H + V + + + +VME+C GS D+++ + L E +IA +C
Sbjct: 55 KHPNIVKYYGSYLKKDE---------LWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCK 105
Query: 647 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+L+GL YLHS G IHRD+KA NILLT G VKL
Sbjct: 106 ELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKL 139
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily includes MAP4K3, MAP4K1,
MAP4K2, MAP4K5, and related proteins. Vertebrate members
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
MAP4K4/6. MAP4Ks are involved in some MAPK signaling
pathways that are important in mediating cellular
responses to extracellular signals by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K1, also called haematopoietic
progenitor kinase 1 (HPK1), is a hematopoietic-specific
STK involved in many cellular signaling cascades
including MAPK, antigen receptor, apoptosis, growth
factor, and cytokine signaling. It participates in the
regulation of T cell receptor signaling and T
cell-mediated immune responses. MAP4K2 was referred to
as germinal center (GC) kinase because of its preferred
location in GC B cells. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. It is required in the activation
of S6 kinase by amino acids and for the phosphorylation
of the mTOR-regulated inhibitor of eukaryotic initiation
factor 4E. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 286 bits (733), Expect = 6e-91
Identities = 123/334 (36%), Positives = 170/334 (50%), Gaps = 79/334 (23%)
Query: 160 PEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQL 219
P++ +E ++ IG G++G VY AR + + E+VAIK + + + + I +EI L++
Sbjct: 1 PQEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKL---EPGDDFEIIQQEISMLKEC 57
Query: 220 KHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
+HPN + Y G YLR W+VMEYC G S DI
Sbjct: 58 RHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDI--------------------------- 90
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
++V + PL E +IA +C L+GL YLH G+IHRD+K NILLTE G VKLAD
Sbjct: 91 ------YQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLAD 144
Query: 339 FG-SASIK---CPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
FG SA + SF+GTPYWMAPEV +G YDGK D+W+LGIT IELAE +PP
Sbjct: 145 FGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPM 204
Query: 395 FNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPC 454
F+++ M AL+ I++++ P PP
Sbjct: 205 FDLHPMRALFLISKSNFP--------------------PPKLK----------------- 227
Query: 455 LQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
WS F F+ CL K+P RP++ +LL H
Sbjct: 228 -DKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQH 260
Score = 200 bits (511), Expect = 7e-59
Identities = 82/154 (53%), Positives = 101/154 (65%), Gaps = 10/154 (6%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVL 64
S+L++ +HPN + Y G YLR W+VMEYC G S DI +V + PL E +IA +C L
Sbjct: 52 SMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETL 111
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIK---CPANSFVGTPYWMAPE 120
+GL YLH G+IHRD+K NILLTE G VKLADFG SA + SF+GTPYWMAPE
Sbjct: 112 KGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPE 171
Query: 121 VILAMDEGQYDGKVDVWSLGITPGSLKDPEIAEL 154
V +G YDGK D+W+LGIT E+AEL
Sbjct: 172 VAAVERKGGYDGKCDIWALGITA-----IELAEL 200
Score = 99.3 bits (248), Expect = 4e-23
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 616 LVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
+VMEYC G S DI +V + PL E +IA +C L+GL YLH G+IHRD+K NILLTE
Sbjct: 77 IVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTE 136
Query: 675 TGTVKL 680
G VKL
Sbjct: 137 DGDVKL 142
>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein
Serine/Threonine Kinases, Mammalian Ste20-like protein
kinase 1 and 2. Serine/threonine kinases (STKs),
mammalian Ste20-like protein kinase 1 (MST1) and MST2
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MST1/2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST1, MST2, and
related proteins including Drosophila Hippo and
Dictyostelium discoideum Krs1 (kinase responsive to
stress 1). MST1/2 and Hippo are involved in a conserved
pathway that governs cell contact inhibition, organ size
control, and tumor development. MST1 activates the
mitogen-activated protein kinases (MAPKs) p38 and c-Jun
N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and
MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase
kinase kinase (MAPKKKK). Activation of JNK by MST1 leads
to caspase activation and apoptosis. MST1 has also been
implicated in cell proliferation and differentiation.
Krs1 may regulate cell growth arrest and apoptosis in
response to cellular stress.
Length = 256
Score = 280 bits (719), Expect = 6e-89
Identities = 121/337 (35%), Positives = 164/337 (48%), Gaps = 86/337 (25%)
Query: 160 PEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQL 219
PE++F+ L ++G GS+G+VY A + ++VAIK + E +I+KEI L+Q
Sbjct: 1 PEEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVP-----VEEDLQEIIKEISILKQC 55
Query: 220 KHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
P ++Y G Y ++ W+VMEYC GS SDI+++
Sbjct: 56 DSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKIT----------------------- 92
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
+ L EEEIAAI L+GL YLHS +IHRD+KAGNILL E G KLAD
Sbjct: 93 ----------NKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLAD 142
Query: 339 FGSASI----KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
FG + N+ +GTP+WMAPEVI E Y+ K D+WSLGIT IE+AE KPPY
Sbjct: 143 FGVSGQLTDTMAKRNTVIGTPFWMAPEVIQ---EIGYNNKADIWSLGITAIEMAEGKPPY 199
Query: 395 FNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPC 454
+++ M A++ I P L P
Sbjct: 200 SDIHPMRAIFMIPNKPPPTL----------------SDP--------------------- 222
Query: 455 LQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
WS F FV CL K+P +RPS+ +LL H +
Sbjct: 223 ---EKWSPEFNDFVKKCLVKDPEERPSAIQLLQHPFI 256
Score = 194 bits (495), Expect = 1e-56
Identities = 73/142 (51%), Positives = 93/142 (65%), Gaps = 8/142 (5%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVL 64
S+L+Q P ++Y G Y ++ W+VMEYC GS SDI+++ + L EEEIAAI L
Sbjct: 50 SILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTL 109
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI----KCPANSFVGTPYWMAPE 120
+GL YLHS +IHRD+KAGNILL E G KLADFG + N+ +GTP+WMAPE
Sbjct: 110 KGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPE 169
Query: 121 VILAMDEGQYDGKVDVWSLGIT 142
VI E Y+ K D+WSLGIT
Sbjct: 170 VIQ---EIGYNNKADIWSLGIT 188
Score = 106 bits (267), Expect = 1e-25
Identities = 43/77 (55%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 608 YSSLFSPQ---LVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHR 663
Y S F +VMEYC GS SDI+++ + L EEEIAAI L+GL YLHS +IHR
Sbjct: 64 YGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHR 123
Query: 664 DVKAGNILLTETGTVKL 680
D+KAGNILL E G KL
Sbjct: 124 DIKAGNILLNEEGQAKL 140
>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like
protein kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST3, MST4,
STK25, Schizosaccharomyces pombe Nak1 and Sid1,
Saccharomyces cerevisiae sporulation-specific protein 1
(SPS1), and related proteins. Nak1 is required by
fission yeast for polarizing the tips of actin
cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Sid1 is a component in the septation initiation network
(SIN) signaling pathway, and plays a role in
cytokinesis. SPS1 plays a role in regulating proteins
required for spore wall formation. MST4 plays a role in
mitogen-activated protein kinase (MAPK) signaling during
cytoskeletal rearrangement, morphogenesis, and
apoptosis. MST3 phosphorylates the STK NDR and may play
a role in cell cycle progression and cell morphology.
STK25 may play a role in the regulation of cell
migration and polarization.
Length = 274
Score = 280 bits (719), Expect = 1e-88
Identities = 127/352 (36%), Positives = 170/352 (48%), Gaps = 86/352 (24%)
Query: 162 KIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKH 221
++F L IG GSFG VY A + ++VAIK + ++ ++ DI +EI+FL Q +
Sbjct: 1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDL--EEAEDEIEDIQQEIQFLSQCRS 58
Query: 222 PNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHF 280
P +Y G +L+ W++MEYC GS D+ LK
Sbjct: 59 PYITKYYGSFLKGSKLWIIMEYCGGGSCLDL---------------------LKP----- 92
Query: 281 ALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
L E IA I VL GL YLH G+IHRD+KA NILL+E G VKLADFG
Sbjct: 93 ---------GKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFG 143
Query: 341 -SASIK---CPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
S + N+FVGTP+WMAPEVI + YD K D+WSLGIT IELA+ +PP
Sbjct: 144 VSGQLTSTMSKRNTFVGTPFWMAPEVI---KQSGYDEKADIWSLGITAIELAKGEPPL-- 198
Query: 397 MNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQ 456
SD ++ M L+ I +N+ P L+
Sbjct: 199 --------------------SD-------------------LHPMRVLFLIPKNNPPSLE 219
Query: 457 SSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRTK 508
+ +S F FVS CL K+P +RPS+ LL H + + + S L LI R K
Sbjct: 220 GNKFSKPFKDFVSLCLNKDPKERPSAKELLKHKFIKKAKKTSYLTLLIERIK 271
Score = 185 bits (473), Expect = 2e-53
Identities = 70/140 (50%), Positives = 87/140 (62%), Gaps = 10/140 (7%)
Query: 8 LRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGVLRG 66
L Q + P +Y G +L+ W++MEYC GS D+++ L E IA I VL G
Sbjct: 53 LSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLK--PGKLDETYIAFILREVLLG 110
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIK---CPANSFVGTPYWMAPEVI 122
L YLH G+IHRD+KA NILL+E G VKLADFG S + N+FVGTP+WMAPEVI
Sbjct: 111 LEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVI 170
Query: 123 LAMDEGQYDGKVDVWSLGIT 142
+ YD K D+WSLGIT
Sbjct: 171 ---KQSGYDEKADIWSLGIT 187
Score = 90.8 bits (226), Expect = 4e-20
Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 617 VMEYCL-GSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
+MEYC GS D+++ L E IA I VL GL YLH G+IHRD+KA NILL+E
Sbjct: 77 IMEYCGGGSCLDLLK--PGKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEE 134
Query: 676 GTVKL 680
G VKL
Sbjct: 135 GDVKL 139
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 272 bits (699), Expect = 2e-85
Identities = 123/357 (34%), Positives = 167/357 (46%), Gaps = 85/357 (23%)
Query: 153 ELFDKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKE 212
++ + DP +++++L +IG G+ G VY A + + VAIKKM L KQ E I+ E
Sbjct: 10 DIVSEGDPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMR-LRKQNKEL---IINE 65
Query: 213 IRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQ 271
I ++ KHPN ++Y YL W+VMEY GS +DII +
Sbjct: 66 ILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQN---------------- 109
Query: 272 QLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 331
+ E +IA +C VL+GL YLHS IHRD+K+ NILL++
Sbjct: 110 -----------------FVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKD 152
Query: 332 GTVKLADFGSASIKCPA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
G+VKLADFG A+ NS VGTPYWMAPEVI D Y KVD+WSLGI CIE+
Sbjct: 153 GSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKD---YGPKVDIWSLGIMCIEM 209
Query: 388 AERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHI 447
AE +PPY + AL+ I P L++ +
Sbjct: 210 AEGEPPYLREPPLRALFLITTKGIPPLKNPE----------------------------- 240
Query: 448 AQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLI 504
WS F F++ CL K+P RPS+ LL H + + LI
Sbjct: 241 -----------KWSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLKKACPKEEFAPLI 286
Score = 184 bits (469), Expect = 1e-52
Identities = 71/141 (50%), Positives = 90/141 (63%), Gaps = 8/141 (5%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVL 64
+++ KHPN ++Y YL W+VMEY GS +DII + + E +IA +C VL
Sbjct: 67 LIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVL 126
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPA----NSFVGTPYWMAPE 120
+GL YLHS IHRD+K+ NILL++ G+VKLADFG A+ NS VGTPYWMAPE
Sbjct: 127 QGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPE 186
Query: 121 VILAMDEGQYDGKVDVWSLGI 141
VI D Y KVD+WSLGI
Sbjct: 187 VIKRKD---YGPKVDIWSLGI 204
Score = 92.7 bits (231), Expect = 1e-20
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Query: 584 HNRHHHHHPVTHLSQHSYNNNNSNYSSLFSPQLVMEYC-LGSASDIIEVHKRPLKEEEIA 642
H + V + + + L+ +VMEY GS +DII + + E +IA
Sbjct: 69 MKDCKHPNIVDYYDSYLVGD------ELW---VVMEYMDGGSLTDIITQNFVRMNEPQIA 119
Query: 643 AICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+C VL+GL YLHS IHRD+K+ NILL++ G+VKL
Sbjct: 120 YVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKL 157
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 244 bits (626), Expect = 2e-75
Identities = 97/328 (29%), Positives = 135/328 (41%), Gaps = 80/328 (24%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+E L ++G GSFG VY AR + ++VAIK + K+ + IL+EI+ L++LKHPN
Sbjct: 1 YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKK--KKIKKDRERILREIKILKKLKHPN 58
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ + + +LVMEYC G+ LF
Sbjct: 59 IVRLYDVFEDEDKLYLVMEYC--------------------EGGD-------------LF 85
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
+ + L E+E +L L YLHS G +HRD+K NILL E G VKLADFG A
Sbjct: 86 DLLKKRGRLSEDEARFYLRQILSALEYLHSKGIVHRDLKPENILLDEDGHVKLADFGLAR 145
Query: 344 I---KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAM 400
+FVGTP +MAPEV+L Y VD+WSLG+ EL KPP+ + +
Sbjct: 146 QLDPGEKLTTFVGTPEYMAPEVLL---GKGYGKAVDIWSLGVILYELLTGKPPFPGDDQL 202
Query: 401 SALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSDW 460
L+ P +W D
Sbjct: 203 LELFKKIGKPKPPFPPPEW---------------------------------------DI 223
Query: 461 SDTFAHFVSSCLAKNPADRPSSGRLLTH 488
S + L K+P R ++ L H
Sbjct: 224 SPEAKDLIRKLLVKDPEKRLTAEEALQH 251
Score = 172 bits (438), Expect = 1e-48
Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 23/175 (13%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVL 64
+L++LKHPN + + + +LVMEYC G D+++ + L E+E +L
Sbjct: 49 KILKKLKHPNIVRLYDVFEDEDKLYLVMEYCEGGDLFDLLK-KRGRLSEDEARFYLRQIL 107
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI---KCPANSFVGTPYWMAPEV 121
L YLHS G +HRD+K NILL E G VKLADFG A +FVGTP +MAPEV
Sbjct: 108 SALEYLHSKGIVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEV 167
Query: 122 ILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELF-------DKEDPEKIFEDLRE 169
+L Y VD+WSLG+ + EL + ++F+ + +
Sbjct: 168 LL---GKGYGKAVDIWSLGVI--------LYELLTGKPPFPGDDQLLELFKKIGK 211
Score = 83.0 bits (206), Expect = 1e-17
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 590 HHP-VTHLSQHSYNNNNSNYSSLFSPQLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSG 647
HP + L + + + Y LVMEYC G D+++ + L E+E
Sbjct: 55 KHPNIVRL-YDVFEDEDKLY-------LVMEYCEGGDLFDLLK-KRGRLSEDEARFYLRQ 105
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+L L YLHS G +HRD+K NILL E G VKL
Sbjct: 106 ILSALEYLHSKGIVHRDLKPENILLDEDGHVKL 138
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 241 bits (616), Expect = 1e-73
Identities = 121/347 (34%), Positives = 157/347 (45%), Gaps = 88/347 (25%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DP IFE + IG G++G VY AR + ++VAIK M + ++ +I +E LR+
Sbjct: 3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE----DEEEEIKEEYNILRK 58
Query: 219 L-KHPNTIEYRGCYL------RDHTAWLVMEYCL-GSASDIIEVHWIEREFHVEGMGNRL 270
HPN + G ++ D WLVME C GS +D+++
Sbjct: 59 YSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVK----------------- 101
Query: 271 QQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 330
+ LKEE IA I LRGL YLH IHRD+K NILLT+
Sbjct: 102 -------------GLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTK 148
Query: 331 TGTVKLADFG-SASIKCPA---NSFVGTPYWMAPEVILAM--DEGQYDGKVDVWSLGITC 384
VKL DFG SA + N+F+GTPYWMAPEVI + YD + DVWSLGIT
Sbjct: 149 NAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITA 208
Query: 385 IELAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSAL 444
IELA+ KPP +M+ M AL+ I +N P L+S
Sbjct: 209 IELADGKPPLCDMHPMRALFKIPRNPPPTLKS---------------------------- 240
Query: 445 YHIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
+WS F F+S CL KN RP LL H +
Sbjct: 241 ------------PENWSKKFNDFISECLIKNYEQRPFMEELLEHPFI 275
Score = 159 bits (405), Expect = 5e-44
Identities = 71/153 (46%), Positives = 88/153 (57%), Gaps = 17/153 (11%)
Query: 7 LLRQL-KHPNTIEYRGCYL------RDHTAWLVMEYCL-GSASDIIE---VHKRPLKEEE 55
+LR+ HPN + G ++ D WLVME C GS +D+++ + LKEE
Sbjct: 55 ILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEW 114
Query: 56 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPA---NSFV 111
IA I LRGL YLH IHRD+K NILLT+ VKL DFG SA + N+F+
Sbjct: 115 IAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFI 174
Query: 112 GTPYWMAPEVILAM--DEGQYDGKVDVWSLGIT 142
GTPYWMAPEVI + YD + DVWSLGIT
Sbjct: 175 GTPYWMAPEVIACDEQPDASYDARSDVWSLGIT 207
Score = 78.9 bits (195), Expect = 4e-16
Identities = 35/69 (50%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 616 LVMEYCL-GSASDIIE---VHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
LVME C GS +D+++ + LKEE IA I LRGL YLH IHRD+K NIL
Sbjct: 86 LVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNIL 145
Query: 672 LTETGTVKL 680
LT+ VKL
Sbjct: 146 LTKNAEVKL 154
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 218 bits (557), Expect = 2e-65
Identities = 107/328 (32%), Positives = 142/328 (43%), Gaps = 91/328 (27%)
Query: 169 EIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYR 228
IG G+FG VY L + + VAIK++S + E I++EI L+ LKHPN ++Y
Sbjct: 7 LIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK-EEALKSIMQEIDLLKNLKHPNIVKYI 65
Query: 229 GCYLRDHTAWLVMEYCL-GSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEV 287
G + ++++EY GS II+ F F
Sbjct: 66 GSIETSDSLYIILEYAENGSLRQIIK-------------------------KFGPFP--- 97
Query: 288 HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI--- 344
E +A VL+GL YLH G IHRD+KA NIL T+ G VKLADFG A+
Sbjct: 98 ------ESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLND 151
Query: 345 -KCPANSFVGTPYWMAPEVILAMDEGQYDG---KVDVWSLGITCIELAERKPPYFNMNAM 400
S VGTPYWMAPEVI + G D+WSLG T IEL PPY+++N M
Sbjct: 152 VSKDDASVVGTPYWMAPEVI------EMSGASTASDIWSLGCTVIELLTGNPPYYDLNPM 205
Query: 401 SALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSDW 460
+AL+ I Q+D P L
Sbjct: 206 AALFRIVQDDHPPLPEGI------------------------------------------ 223
Query: 461 SDTFAHFVSSCLAKNPADRPSSGRLLTH 488
S F+ C K+P RP++ +LL H
Sbjct: 224 SPELKDFLMQCFQKDPNLRPTAKQLLKH 251
Score = 148 bits (376), Expect = 3e-40
Identities = 68/163 (41%), Positives = 85/163 (52%), Gaps = 23/163 (14%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGVL 64
LL+ LKHPN ++Y G + ++++EY GS II+ P E +A VL
Sbjct: 51 DLLKNLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKFG-PFPESLVAVYVYQVL 109
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI----KCPANSFVGTPYWMAPE 120
+GL YLH G IHRD+KA NIL T+ G VKLADFG A+ S VGTPYWMAPE
Sbjct: 110 QGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPE 169
Query: 121 VILAMDEGQYDG---KVDVWSLGITPGSLKDPEIAELFDKEDP 160
VI + G D+WSLG T + EL P
Sbjct: 170 VI------EMSGASTASDIWSLGCT--------VIELLTGNPP 198
Score = 72.3 bits (178), Expect = 5e-14
Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 617 VMEYCL-GSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
++EY GS II+ P E +A VL+GL YLH G IHRD+KA NIL T+
Sbjct: 77 ILEYAENGSLRQIIKKFG-PFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKD 135
Query: 676 GTVKL 680
G VKL
Sbjct: 136 GVVKL 140
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in
cytoskeletal rearrangement, cell differentiation,
transformation and proliferation. OSR1 and SPAK contain
a conserved C-terminal (CCT) domain, which recognizes a
unique motif ([RK]FX[VI]) present in their activating
kinases (WNK1/WNK4) and their substrates.
Length = 267
Score = 218 bits (557), Expect = 2e-65
Identities = 114/335 (34%), Positives = 155/335 (46%), Gaps = 83/335 (24%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+E + IG G+ VY A CL + E VAIK++ ++C ++ KE++ + Q HPN
Sbjct: 3 YELIEVIGVGATAVVYAAICLPNNEKVAIKRIDL--EKCQTSVDELRKEVQAMSQCNHPN 60
Query: 224 TIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
++Y ++ WLVM Y GS DI++
Sbjct: 61 VVKYYTSFVVGDELWLVMPYLSGGSLLDIMK----------------------------- 91
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-S 341
+ L E IA + VL+GL YLHS G+IHRD+KAGNILL E G+VK+ADFG S
Sbjct: 92 --SSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVS 149
Query: 342 ASIKCPA-------NSFVGTPYWMAPEVILAMDEGQ-YDGKVDVWSLGITCIELAERKPP 393
AS+ +FVGTP WMAPEV M++ YD K D+WS GIT IELA P
Sbjct: 150 ASLADGGDRTRKVRKTFVGTPCWMAPEV---MEQVHGYDFKADIWSFGITAIELATGAAP 206
Query: 394 YFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTP 453
Y M L QND P L+ + A+ K
Sbjct: 207 YSKYPPMKVLMLTLQNDPPSLE-----------TGADYKK-------------------- 235
Query: 454 CLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
+S +F +S CL K+P+ RP++ LL H
Sbjct: 236 ------YSKSFRKMISLCLQKDPSKRPTAEELLKH 264
Score = 154 bits (391), Expect = 3e-42
Identities = 71/146 (48%), Positives = 88/146 (60%), Gaps = 17/146 (11%)
Query: 10 QLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRP---LKEEEIAAICSGVLR 65
Q HPN ++Y ++ WLVM Y GS DI++ P L E IA + VL+
Sbjct: 55 QCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMK-SSYPRGGLDEAIIATVLKEVLK 113
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPA-------NSFVGTPYWM 117
GL YLHS G+IHRD+KAGNILL E G+VK+ADFG SAS+ +FVGTP WM
Sbjct: 114 GLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWM 173
Query: 118 APEVILAMDEGQ-YDGKVDVWSLGIT 142
APEV M++ YD K D+WS GIT
Sbjct: 174 APEV---MEQVHGYDFKADIWSFGIT 196
Score = 77.8 bits (192), Expect = 1e-15
Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 616 LVMEYCL-GSASDIIEVHKRP---LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
LVM Y GS DI++ P L E IA + VL+GL YLHS G+IHRD+KAGNIL
Sbjct: 76 LVMPYLSGGSLLDIMK-SSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNIL 134
Query: 672 LTETGTVKL 680
L E G+VK+
Sbjct: 135 LGEDGSVKI 143
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 216 bits (553), Expect = 1e-64
Identities = 120/355 (33%), Positives = 168/355 (47%), Gaps = 85/355 (23%)
Query: 158 EDPEKIFEDLREIGHGSFGAVYYARCLVSRE--IVAIKKMSYLGKQCAEKWADILKEIRF 215
+P I+E + E+G G+FG VY A+ +E + A K+ + + E+ D + EI
Sbjct: 1 VNPNDIWEIIGELGDGAFGKVYKAQ---HKETGLFAAAKIIQIESE--EELEDFMVEIDI 55
Query: 216 LRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKC 275
L + KHPN + Y ++ W+++E+C G A D I + E E
Sbjct: 56 LSECKHPNIVGLYEAYFYENKLWILIEFCDGGALDSIML---ELE--------------- 97
Query: 276 FTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVK 335
R L E +I +C +L LN+LHS IHRD+KAGNILLT G VK
Sbjct: 98 --------------RGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVK 143
Query: 336 LADFG-SASIKCPA---NSFVGTPYWMAPEVIL--AMDEGQYDGKVDVWSLGITCIELAE 389
LADFG SA K ++F+GTPYWMAPEV+ + YD K D+WSLGIT IELA+
Sbjct: 144 LADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQ 203
Query: 390 RKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQ 449
+PP+ +N M L I +++ P L
Sbjct: 204 MEPPHHELNPMRVLLKILKSEPPTL----------------------------------- 228
Query: 450 NDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLI 504
Q S WS +F F+ SCL K+P DRP++ LL H V+ + DL+
Sbjct: 229 -----DQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSDQSDNKAIKDLL 278
Score = 151 bits (383), Expect = 5e-41
Identities = 68/143 (47%), Positives = 90/143 (62%), Gaps = 7/143 (4%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASD-IIEVHKRPLKEEEIAAICSGVLR 65
+L + KHPN + Y ++ W+++E+C G A D I+ +R L E +I +C +L
Sbjct: 55 ILSECKHPNIVGLYEAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLE 114
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPA---NSFVGTPYWMAPEV 121
LN+LHS IHRD+KAGNILLT G VKLADFG SA K ++F+GTPYWMAPEV
Sbjct: 115 ALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEV 174
Query: 122 IL--AMDEGQYDGKVDVWSLGIT 142
+ + YD K D+WSLGIT
Sbjct: 175 VACETFKDNPYDYKADIWSLGIT 197
Score = 76.7 bits (189), Expect = 3e-15
Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 611 LFSPQLVM--EYCLGSASD-IIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKA 667
+ +L + E+C G A D I+ +R L E +I +C +L LN+LHS IHRD+KA
Sbjct: 72 FYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKA 131
Query: 668 GNILLTETGTVKL 680
GNILLT G VKL
Sbjct: 132 GNILLTLDGDVKL 144
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 213 bits (544), Expect = 1e-63
Identities = 106/332 (31%), Positives = 145/332 (43%), Gaps = 76/332 (22%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+E LR++G GSFG VY A+ + +IVA+K + ++ +K +EIR LR+L HPN
Sbjct: 1 YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKS-KKDQTARREIRILRRLSHPN 59
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ + +LVMEYC E LF
Sbjct: 60 IVRLIDAFEDKDHLYLVMEYC---------------------------------EGGDLF 86
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
++ PL E+E I +LRGL YLHS G IHRD+K NILL E G VK+ADFG A
Sbjct: 87 DYLSRGGPLSEDEAKKIALQILRGLEYLHSNGIIHRDLKPENILLDENGVVKIADFGLAK 146
Query: 344 IKC----PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNA 399
+FVGTP++MAPEV+L Y KVDVWSLG+ EL KPP+ N
Sbjct: 147 KLLKSSSSLTTFVGTPWYMAPEVLL--GGNGYGPKVDVWSLGVILYELLTGKPPFSGENI 204
Query: 400 MSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSD 459
+ L I + PP + + S
Sbjct: 205 LDQLQLIRRI---------------------LGPPL---------------EFDEPKWSS 228
Query: 460 WSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
S+ + CL K+P+ RP++ +L H
Sbjct: 229 GSEEAKDLIKKCLNKDPSKRPTAEEILQHPWF 260
Score = 155 bits (393), Expect = 2e-42
Identities = 81/228 (35%), Positives = 104/228 (45%), Gaps = 30/228 (13%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVL 64
+LR+L HPN + + +LVMEYC G D + PL E+E I +L
Sbjct: 50 RILRRLSHPNIVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRGG-PLSEDEAKKIALQIL 108
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKC----PANSFVGTPYWMAPE 120
RGL YLHS G IHRD+K NILL E G VK+ADFG A +FVGTP++MAPE
Sbjct: 109 RGLEYLHSNGIIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPE 168
Query: 121 VILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDP--EKIFED----LREIGHGS 174
V+L Y KVDVWSLG+ + EL + P + D +R I
Sbjct: 169 VLL--GGNGYGPKVDVWSLGVI--------LYELLTGKPPFSGENILDQLQLIRRILGPP 218
Query: 175 FGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHP 222
S E A + + K +EI L+HP
Sbjct: 219 LEFDEPKWSSGSEE--AKDLIKKCLNKDPSKRPTA-EEI-----LQHP 258
Score = 77.7 bits (192), Expect = 9e-16
Identities = 35/66 (53%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 616 LVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
LVMEYC G D + PL E+E I +LRGL YLHS G IHRD+K NILL E
Sbjct: 75 LVMEYCEGGDLFDYLSRGG-PLSEDEAKKIALQILRGLEYLHSNGIIHRDLKPENILLDE 133
Query: 675 TGTVKL 680
G VK+
Sbjct: 134 NGVVKI 139
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 211 bits (539), Expect = 9e-63
Identities = 101/331 (30%), Positives = 137/331 (41%), Gaps = 89/331 (26%)
Query: 168 REIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEY 227
+G GSFG+VY A + E++A+K + L E+ + +EIR L L+HPN + Y
Sbjct: 6 ELLGRGSFGSVYLALDKDTGELMAVKSV-ELSGDSEEELEALEREIRILSSLQHPNIVRY 64
Query: 228 RGCYL-RDHTAW-LVMEYCL-GSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
G + + +EY GS S +++
Sbjct: 65 YGSERDEEKNTLNIFLEYVSGGSLSSLLK------------------------------K 94
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI 344
F L E I +L GL YLHS G +HRD+K NIL+ G VKLADFG A
Sbjct: 95 F----GKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKR 150
Query: 345 K------CPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNM- 397
S GTPYWMAPEVI +Y D+WSLG T IE+A KPP+ +
Sbjct: 151 LGDIETGEGTGSVRGTPYWMAPEVI---RGEEYGRAADIWSLGCTVIEMATGKPPWSELG 207
Query: 398 NAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQS 457
N M+ALY I + +PP P S
Sbjct: 208 NPMAALYKIGSSG---------------------EPPEI----------------PEHLS 230
Query: 458 SDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
+ D F+ CL ++P RP++ LL H
Sbjct: 231 EEAKD----FLRKCLRRDPKKRPTADELLQH 257
Score = 144 bits (365), Expect = 1e-38
Identities = 58/146 (39%), Positives = 73/146 (50%), Gaps = 13/146 (8%)
Query: 6 SLLRQLKHPNTIEYRGCYL-RDHTAW-LVMEYCL-GSASDIIEVHKRPLKEEEIAAICSG 62
+L L+HPN + Y G + + +EY GS S +++ L E I
Sbjct: 51 RILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLK-KFGKLPEPVIRKYTRQ 109
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK------CPANSFVGTPYW 116
+L GL YLHS G +HRD+K NIL+ G VKLADFG A S GTPYW
Sbjct: 110 ILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYW 169
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGIT 142
MAPEVI +Y D+WSLG T
Sbjct: 170 MAPEVI---RGEEYGRAADIWSLGCT 192
Score = 68.4 bits (168), Expect = 1e-12
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 616 LVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
+ +EY GS S +++ L E I +L GL YLHS G +HRD+K NIL+
Sbjct: 78 IFLEYVSGGSLSSLLK-KFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDS 136
Query: 675 TGTVKL 680
G VKL
Sbjct: 137 DGVVKL 142
>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein
Serine/Threonine Kinase, STK25 or Yeast
Sps1/Ste20-related kinase 1. Serine/threonine kinases
(STKs), STK25 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The STK25 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. STK25 is also called Ste20/oxidant stress
response kinase 1 (SOK1) or yeast Sps1/Ste20-related
kinase 1 (YSK1). STK25 is localized in the Golgi
apparatus through its interaction with the Golgi matrix
protein GM130. It may play a role in the regulation of
cell migration and polarization. STK25 binds and
phosphorylates CCM3 (cerebral cavernous malformation 3),
also called PCD10 (programmed cell death 10), and may
play a role in apoptosis. Human STK25 is a candidate
gene responsible for pseudopseudohypoparathyroidism
(PPHP), a disease that shares features with the Albright
hereditary osteodystrophy (AHO) phenotype.
Length = 277
Score = 202 bits (516), Expect = 2e-59
Identities = 126/355 (35%), Positives = 170/355 (47%), Gaps = 86/355 (24%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DPE++F L IG GSFG VY ++E+VAIK + ++ ++ DI +EI L Q
Sbjct: 1 DPEELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDL--EEAEDEIEDIQQEITVLSQ 58
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
P Y G YL+ W++MEY G G+ L LK
Sbjct: 59 CDSPYITRYYGSYLKGTKLWIIMEYL--------------------GGGSALDLLK---- 94
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
PL+E IA I +L+GL+YLHS +IHRD+KA N+LL+E G VKLAD
Sbjct: 95 ----------PGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLAD 144
Query: 339 FGSA----SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
FG A + N+FVGTP+WMAPEVI + YD K D+WSLGIT IELA+ +PP
Sbjct: 145 FGVAGQLTDTQIKRNTFVGTPFWMAPEVI---KQSAYDFKADIWSLGITAIELAKGEPPN 201
Query: 395 FNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPC 454
+++ M L+ I +N P L+
Sbjct: 202 SDLHPMRVLFLIPKNSPPTLEGQ------------------------------------- 224
Query: 455 LQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTR-PRSPSVLVDLIRRTK 508
+S F FV +CL K+P RP++ LL H +TR + S L +LI R K
Sbjct: 225 -----YSKPFKEFVEACLNKDPRFRPTAKELLKHKFITRYTKKTSFLTELIDRYK 274
Score = 135 bits (341), Expect = 2e-35
Identities = 71/149 (47%), Positives = 91/149 (61%), Gaps = 8/149 (5%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
++L Q P Y G YL+ W++MEY LG S + + PL+E IA I +L+
Sbjct: 54 TVLSQCDSPYITRYYGSYLKGTKLWIIMEY-LGGGSALDLLKPGPLEETYIATILREILK 112
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA----SIKCPANSFVGTPYWMAPEV 121
GL+YLHS +IHRD+KA N+LL+E G VKLADFG A + N+FVGTP+WMAPEV
Sbjct: 113 GLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEV 172
Query: 122 ILAMDEGQYDGKVDVWSLGITPGSLKDPE 150
I + YD K D+WSLGIT L E
Sbjct: 173 I---KQSAYDFKADIWSLGITAIELAKGE 198
Score = 65.8 bits (160), Expect = 1e-11
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
++MEY LG S + + PL+E IA I +L+GL+YLHS +IHRD+KA N+LL+E
Sbjct: 79 IIMEY-LGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQ 137
Query: 676 GTVKL 680
G VKL
Sbjct: 138 GDVKL 142
>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 3. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. MAP4K3 is required in the
activation of S6 kinase by amino acids and for the
phosphorylation of the mTOR-regulated inhibitor of
eukaryotic initiation factor 4E. mTOR regulates ribosome
biogenesis and protein translation, and is frequently
deregulated in cancer.
Length = 267
Score = 201 bits (513), Expect = 3e-59
Identities = 118/339 (34%), Positives = 167/339 (49%), Gaps = 80/339 (23%)
Query: 155 FDKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIR 214
+ +P++ FE ++ IG G++G VY AR + + E+ AIK + + E +A + +EI
Sbjct: 2 LSRRNPQEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKL---EPGEDFAVVQQEII 58
Query: 215 FLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHWIEREFHVEGMGNRLQQL 273
++ KH N + Y G YLR W+ ME+C G S DI +HV G
Sbjct: 59 MMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDI---------YHVTG-------- 101
Query: 274 KCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGT 333
PL E +IA + L+GL YLHS G++HRD+K NILLT+ G
Sbjct: 102 -----------------PLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGH 144
Query: 334 VKLADFG-SASIKC---PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
VKLADFG SA I SF+GTPYWMAPEV +G Y+ D+W++GIT IELAE
Sbjct: 145 VKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAE 204
Query: 390 RKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQ 449
+PP F+++ M AL+ + + + +PP
Sbjct: 205 LQPPMFDLHPMRALF--------------------LMTKSNFQPPKLK------------ 232
Query: 450 NDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
WS++F HFV L KNP RP++ +LL H
Sbjct: 233 ------DKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQH 265
Score = 140 bits (354), Expect = 2e-37
Identities = 72/155 (46%), Positives = 94/155 (60%), Gaps = 7/155 (4%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLR 65
+++ KH N + Y G YLR W+ ME+C G S DI V PL E +IA + L+
Sbjct: 59 MMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHV-TGPLSESQIAYVSRETLQ 117
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIK---CPANSFVGTPYWMAPEV 121
GL YLHS G++HRD+K NILLT+ G VKLADFG SA I SF+GTPYWMAPEV
Sbjct: 118 GLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEV 177
Query: 122 ILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFD 156
+G Y+ D+W++GIT L + + +FD
Sbjct: 178 AAVERKGGYNQLCDIWAVGITAIELAELQ-PPMFD 211
Score = 67.8 bits (165), Expect = 2e-12
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 616 LVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
+ ME+C G S DI V PL E +IA + L+GL YLHS G++HRD+K NILLT+
Sbjct: 83 ICMEFCGGGSLQDIYHV-TGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTD 141
Query: 675 TGTVKL 680
G VKL
Sbjct: 142 NGHVKL 147
>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 5. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K5, also called germinal
center kinase-related enzyme (GCKR), has been shown to
activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5
also facilitates Wnt signaling in B cells, and may
therefore be implicated in the control of cell fate,
proliferation, and polarity.
Length = 267
Score = 196 bits (498), Expect = 4e-57
Identities = 119/338 (35%), Positives = 168/338 (49%), Gaps = 82/338 (24%)
Query: 157 KEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFL 216
+ +P+ +E ++ +G G++G VY AR L + E+ A+K + + + ++ I +EI +
Sbjct: 4 RRNPQHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKL---EPGDDFSLIQQEIFMV 60
Query: 217 RQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHWIEREFHVEGMGNRLQQLKC 275
++ KH N + Y G YL W+ MEYC G S DI +HV G
Sbjct: 61 KECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDI---------YHVTG---------- 101
Query: 276 FTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVK 335
PL E +IA +C L+GL YLHS G++HRD+K NILLT+ G VK
Sbjct: 102 ---------------PLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVK 146
Query: 336 LADFGSASIKCPAN-----SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 390
LADFG A+ K A SF+GTPYWMAPEV G Y+ D+W++GIT IELAE
Sbjct: 147 LADFGVAA-KITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAEL 205
Query: 391 KPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQN 450
+PP F+++ M AL+ + S + +PP
Sbjct: 206 QPPMFDLHPMRALF--------------------LMSKSNFQPPKLK------------- 232
Query: 451 DTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
+ WS TF +FV L KNP RP++ RLLTH
Sbjct: 233 -----DKTKWSSTFHNFVKISLTKNPKKRPTAERLLTH 265
Score = 137 bits (345), Expect = 5e-36
Identities = 74/154 (48%), Positives = 94/154 (61%), Gaps = 13/154 (8%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLR 65
++++ KH N + Y G YL W+ MEYC G S DI V PL E +IA +C L+
Sbjct: 59 MVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHV-TGPLSELQIAYVCRETLQ 117
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN-----SFVGTPYWMAPE 120
GL YLHS G++HRD+K NILLT+ G VKLADFG A+ K A SF+GTPYWMAPE
Sbjct: 118 GLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAA-KITATIAKRKSFIGTPYWMAPE 176
Query: 121 VILAMDEGQYDGKVDVWSLGITPGSLKDPEIAEL 154
V G Y+ D+W++GIT E+AEL
Sbjct: 177 VAAVEKNGGYNQLCDIWAVGITA-----IELAEL 205
Score = 69.7 bits (170), Expect = 6e-13
Identities = 36/66 (54%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 616 LVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
+ MEYC G S DI V PL E +IA +C L+GL YLHS G++HRD+K NILLT+
Sbjct: 83 ICMEYCGGGSLQDIYHV-TGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTD 141
Query: 675 TGTVKL 680
G VKL
Sbjct: 142 NGDVKL 147
>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 4. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 4 (MST4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST4 is sometimes
referred to as MASK (MST3 and SOK1-related kinase). It
plays a role in mitogen-activated protein kinase (MAPK)
signaling during cytoskeletal rearrangement,
morphogenesis, and apoptosis. It influences cell growth
and transformation by modulating the extracellular
signal-regulated kinase (ERK) pathway. MST4 may also
play a role in tumor formation and progression. It
localizes in the Golgi apparatus by interacting with the
Golgi matrix protein GM130 and may play a role in cell
migration.
Length = 277
Score = 195 bits (497), Expect = 9e-57
Identities = 119/355 (33%), Positives = 172/355 (48%), Gaps = 86/355 (24%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DPE++F L IG GSFG V+ ++++VAIK + ++ ++ DI +EI L Q
Sbjct: 1 DPEELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDL--EEAEDEIEDIQQEITVLSQ 58
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
P +Y G YL+ W++MEY G G+ L L+
Sbjct: 59 CDSPYVTKYYGSYLKGTKLWIIMEYL--------------------GGGSALDLLRA--- 95
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
P E +IA + +L+GL+YLHS +IHRD+KA N+LL+E G VKLAD
Sbjct: 96 -----------GPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLAD 144
Query: 339 FGSA----SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
FG A + N+FVGTP+WMAPEVI + YD K D+WSLGIT IELA+ +PP
Sbjct: 145 FGVAGQLTDTQIKRNTFVGTPFWMAPEVI---QQSAYDSKADIWSLGITAIELAKGEPPN 201
Query: 395 FNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPC 454
+M+ M L+ I +N+ P L
Sbjct: 202 SDMHPMRVLFLIPKNNPPTL---------------------------------------- 221
Query: 455 LQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTR-PRSPSVLVDLIRRTK 508
+ ++S F F+ +CL K+P+ RP++ LL H + + + S L +LI R K
Sbjct: 222 --TGEFSKPFKEFIDACLNKDPSFRPTAKELLKHKFIVKNAKKTSYLTELIDRFK 274
Score = 134 bits (339), Expect = 4e-35
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 8/149 (5%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
++L Q P +Y G YL+ W++MEY LG S + + P E +IA + +L+
Sbjct: 54 TVLSQCDSPYVTKYYGSYLKGTKLWIIMEY-LGGGSALDLLRAGPFDEFQIATMLKEILK 112
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA----SIKCPANSFVGTPYWMAPEV 121
GL+YLHS +IHRD+KA N+LL+E G VKLADFG A + N+FVGTP+WMAPEV
Sbjct: 113 GLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEV 172
Query: 122 ILAMDEGQYDGKVDVWSLGITPGSLKDPE 150
I + YD K D+WSLGIT L E
Sbjct: 173 I---QQSAYDSKADIWSLGITAIELAKGE 198
Score = 64.3 bits (156), Expect = 4e-11
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
++MEY LG S + + P E +IA + +L+GL+YLHS +IHRD+KA N+LL+E
Sbjct: 79 IIMEY-LGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQ 137
Query: 676 GTVKL 680
G VKL
Sbjct: 138 GDVKL 142
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Nak1 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nak1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity
and morphogenesis. Kic1p interacts with Cdc31p, the
yeast homologue of centrin, and phosphorylates
substrates in a Cdc31p-dependent manner.
Length = 277
Score = 194 bits (496), Expect = 2e-56
Identities = 112/356 (31%), Positives = 167/356 (46%), Gaps = 90/356 (25%)
Query: 163 IFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKH- 221
+++ L IG G++GAVY + + + +VA+K ++ + +DI +E+ L QL+
Sbjct: 2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPD--DDVSDIQREVALLSQLRQS 59
Query: 222 --PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
PN +Y G YL+ W++MEY G G+ +K
Sbjct: 60 QPPNITKYYGSYLKGPRLWIIMEYAEG--------------------GSVRTLMKA---- 95
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
P+ E+ I+ I VL L Y+H +G IHRD+KA NIL+T TG VKL DF
Sbjct: 96 ----------GPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDF 145
Query: 340 GSA----SIKCPANSFVGTPYWMAPEVILAMDEGQ-YDGKVDVWSLGITCIELAERKPPY 394
G A ++FVGTPYWMAPEVI EG+ YD K D+WSLGIT E+A PPY
Sbjct: 146 GVAALLNQNSSKRSTFVGTPYWMAPEVIT---EGKYYDTKADIWSLGITIYEMATGNPPY 202
Query: 395 FNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPC 454
+++A A+ I ++ KPP
Sbjct: 203 SDVDAFRAMMLIPKS----------------------KPPR------------------- 221
Query: 455 LQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV-TRPRSP-SVLVDLIRRTK 508
L+ + +S FV++CL + P +R S+ LL + ++P S+L +LI R +
Sbjct: 222 LEDNGYSKLLREFVAACLDEEPKERLSAEELLKSKWIKAHSKTPVSILKELISRYQ 277
Score = 151 bits (382), Expect = 6e-41
Identities = 70/146 (47%), Positives = 90/146 (61%), Gaps = 14/146 (9%)
Query: 6 SLLRQLKH---PNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICS 61
+LL QL+ PN +Y G YL+ W++MEY G S +++ P+ E+ I+ I
Sbjct: 51 ALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKA--GPIAEKYISVIIR 108
Query: 62 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA----SIKCPANSFVGTPYWM 117
VL L Y+H +G IHRD+KA NIL+T TG VKL DFG A ++FVGTPYWM
Sbjct: 109 EVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWM 168
Query: 118 APEVILAMDEGQ-YDGKVDVWSLGIT 142
APEVI EG+ YD K D+WSLGIT
Sbjct: 169 APEVIT---EGKYYDTKADIWSLGIT 191
Score = 62.8 bits (153), Expect = 1e-10
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 616 LVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
++MEY G S +++ P+ E+ I+ I VL L Y+H +G IHRD+KA NIL+T
Sbjct: 79 IIMEYAEGGSVRTLMKA--GPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTN 136
Query: 675 TGTVKL 680
TG VKL
Sbjct: 137 TGNVKL 142
>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 3. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 3 (MST3) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST3
phosphorylates the STK NDR and may play a role in cell
cycle progression and cell morphology. It may also
regulate paxillin and consequently, cell migration. MST3
is present in human placenta, where it plays an
essential role in the oxidative stress-induced apoptosis
of trophoblasts in normal spontaneous delivery.
Dysregulation of trophoblast apoptosis may result in
pregnancy complications such as preeclampsia and
intrauterine growth retardation.
Length = 277
Score = 194 bits (494), Expect = 2e-56
Identities = 123/356 (34%), Positives = 174/356 (48%), Gaps = 88/356 (24%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DPE++F L +IG GSFG V+ ++++VAIK + ++ ++ DI +EI L Q
Sbjct: 1 DPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDL--EEAEDEIEDIQQEITVLSQ 58
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
P +Y G YL+D W++MEY G SA D++E
Sbjct: 59 CDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE------------------------ 94
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
PL E +IA I +L+GL+YLHS +IHRD+KA N+LL+E G VKLA
Sbjct: 95 -----------PGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLA 143
Query: 338 DFGSA----SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP 393
DFG A + N+FVGTP+WMAPEVI + YD K D+WSLGIT IELA+ +PP
Sbjct: 144 DFGVAGQLTDTQIKRNTFVGTPFWMAPEVI---KQSAYDSKADIWSLGITAIELAKGEPP 200
Query: 394 YFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTP 453
+ ++ M L+ I +N+ P L+
Sbjct: 201 HSELHPMKVLFLIPKNNPPTLE-------------------------------------- 222
Query: 454 CLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTR-PRSPSVLVDLIRRTK 508
++S FV +CL K P+ RP++ LL H + R + S L +LI R K
Sbjct: 223 ----GNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFIVRFAKKTSYLTELIDRYK 274
Score = 138 bits (348), Expect = 2e-36
Identities = 76/156 (48%), Positives = 99/156 (63%), Gaps = 12/156 (7%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVL 64
++L Q P +Y G YL+D W++MEY G SA D++E PL E +IA I +L
Sbjct: 54 TVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE--PGPLDETQIATILREIL 111
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA----SIKCPANSFVGTPYWMAPE 120
+GL+YLHS +IHRD+KA N+LL+E G VKLADFG A + N+FVGTP+WMAPE
Sbjct: 112 KGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPE 171
Query: 121 VILAMDEGQYDGKVDVWSLGITPGSLK--DPEIAEL 154
VI + YD K D+WSLGIT L +P +EL
Sbjct: 172 VI---KQSAYDSKADIWSLGITAIELAKGEPPHSEL 204
Score = 65.9 bits (160), Expect = 1e-11
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 616 LVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
++MEY G SA D++E PL E +IA I +L+GL+YLHS +IHRD+KA N+LL+E
Sbjct: 79 IIMEYLGGGSALDLLE--PGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSE 136
Query: 675 TGTVKL 680
G VKL
Sbjct: 137 HGEVKL 142
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as
a regulator of polo-like kinase 1 (Plk1), a protein
which is overexpressed in multiple tumor types.
Length = 292
Score = 194 bits (495), Expect = 2e-56
Identities = 116/359 (32%), Positives = 168/359 (46%), Gaps = 81/359 (22%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DP +++E + E+G G+FG VY A+ ++E A+ + + E+ D + EI L
Sbjct: 9 DPNEVWEIIGELGDGAFGKVYKAK---NKETGALAAAKVIETKSEEELEDYMVEIEILAT 65
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
HP ++ G + D W+++E+C G A D I +
Sbjct: 66 CNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLEL---------------------- 103
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
R L E +I IC +L L YLHS+ IHRD+KAGN+LLT G +KLAD
Sbjct: 104 ----------DRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLAD 153
Query: 339 FGSASIKCPA----NSFVGTPYWMAPEVIL--AMDEGQYDGKVDVWSLGITCIELAERKP 392
FG ++ +SF+GTPYWMAPEV++ M + YD K D+WSLGIT IE+A+ +P
Sbjct: 154 FGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEP 213
Query: 393 PYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDT 452
P+ +N M L IA+++ P L
Sbjct: 214 PHHELNPMRVLLKIAKSEPPTL-------------------------------------- 235
Query: 453 PCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRTKAAV 511
Q S WS F F+ + L K+P RPS+ +LL H V+ S L +L+ KA V
Sbjct: 236 --SQPSKWSMEFRDFLKTALDKHPETRPSAAQLLEHPFVSSVTSNRPLRELVAEAKAEV 292
Score = 134 bits (338), Expect = 7e-35
Identities = 65/143 (45%), Positives = 88/143 (61%), Gaps = 7/143 (4%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVH-KRPLKEEEIAAICSGVLR 65
+L HP ++ G + D W+++E+C G A D I + R L E +I IC +L
Sbjct: 62 ILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLE 121
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPA----NSFVGTPYWMAPEV 121
L YLHS+ IHRD+KAGN+LLT G +KLADFG ++ +SF+GTPYWMAPEV
Sbjct: 122 ALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEV 181
Query: 122 IL--AMDEGQYDGKVDVWSLGIT 142
++ M + YD K D+WSLGIT
Sbjct: 182 VMCETMKDTPYDYKADIWSLGIT 204
Score = 67.4 bits (164), Expect = 4e-12
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 616 LVMEYCLGSASDIIEVH-KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
+++E+C G A D I + R L E +I IC +L L YLHS+ IHRD+KAGN+LLT
Sbjct: 86 IMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTL 145
Query: 675 TGTVKL 680
G +KL
Sbjct: 146 DGDIKL 151
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 188 bits (479), Expect = 5e-54
Identities = 112/354 (31%), Positives = 158/354 (44%), Gaps = 86/354 (24%)
Query: 156 DKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRF 215
D DP ++ +IG GS G V A + VA+KKM +Q E + E+
Sbjct: 13 DPGDPRSYLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRREL---LFNEVVI 69
Query: 216 LRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSA-SDIIEVHWIEREFHVEGMGNRLQQLK 274
+R +HPN +E YL W+VME+ G A +DI+
Sbjct: 70 MRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIV---------------------- 107
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
H R + EE+IA +C VL+ L++LH+ G IHRD+K+ +ILLT G V
Sbjct: 108 ------------THTR-MNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRV 154
Query: 335 KLADFG---SASIKCPA-NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 390
KL+DFG S + P S VGTPYWMAPEVI + Y +VD+WSLGI IE+ +
Sbjct: 155 KLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRL---PYGTEVDIWSLGIMVIEMVDG 211
Query: 391 KPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQN 450
+PPYFN + A+ I N PP
Sbjct: 212 EPPYFNEPPLQAMKRIRDN----------------------LPPKLKN---------LHK 240
Query: 451 DTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLI 504
+P L+S F+ L ++PA R ++ LL H + + PS +V L+
Sbjct: 241 VSPRLRS---------FLDRMLVRDPAQRATAAELLNHPFLAKAGPPSSIVPLM 285
Score = 144 bits (366), Expect = 1e-38
Identities = 71/160 (44%), Positives = 96/160 (60%), Gaps = 18/160 (11%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSA-SDIIEVHKRPLKEEEIAAICSGVL 64
++R +HPN +E YL W+VME+ G A +DI+ H R + EE+IA +C VL
Sbjct: 68 VIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIV-THTR-MNEEQIATVCLAVL 125
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG---SASIKCPA-NSFVGTPYWMAPE 120
+ L++LH+ G IHRD+K+ +ILLT G VKL+DFG S + P S VGTPYWMAPE
Sbjct: 126 KALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPE 185
Query: 121 VILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDP 160
VI + Y +VD+WSLGI + E+ D E P
Sbjct: 186 VISRL---PYGTEVDIWSLGIM--------VIEMVDGEPP 214
Score = 74.0 bits (182), Expect = 2e-14
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 616 LVMEYCLGSA-SDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
+VME+ G A +DI+ H R + EE+IA +C VL+ L++LH+ G IHRD+K+ +ILLT
Sbjct: 93 VVMEFLEGGALTDIV-THTR-MNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTS 150
Query: 675 TGTVKL 680
G VKL
Sbjct: 151 DGRVKL 156
>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein
Serine/Threonine Kinase, Group I p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group I, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs are
implicated in the regulation of many cellular processes
including growth factor receptor-mediated proliferation,
cell polarity, cell motility, cell death and survival,
and actin cytoskeleton organization. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs, also called conventional PAKs, include
PAK1, PAK2, and PAK3. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). They interact
with the SH3 domain containing proteins Nck, Grb2 and
PIX. Binding of group I PAKs to activated GTPases leads
to conformational changes that destabilize the AID,
allowing autophosphorylation and full activation of the
kinase domain. Known group I PAK substrates include
MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc,
Stat5a, and Aurora A, among others.
Length = 293
Score = 184 bits (469), Expect = 1e-52
Identities = 121/359 (33%), Positives = 164/359 (45%), Gaps = 86/359 (23%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DP+K + +IG G+ G VY A + + + VAIK+M+ L +Q K I+ EI +R+
Sbjct: 16 DPKKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMN-LQQQ--PKKELIINEILVMRE 72
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
KHPN + Y YL W+VMEY G S +D+
Sbjct: 73 NKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV-------------------------- 106
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
V + + E +IAA+C L+ L +LHS IHRD+K+ NILL G+VKL
Sbjct: 107 ---------VTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLT 157
Query: 338 DFGSASIKCPANS----FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP 393
DFG + P S VGTPYWMAPEV+ Y KVD+WSLGI IE+ E +PP
Sbjct: 158 DFGFCAQITPEQSKRSTMVGTPYWMAPEVV---TRKAYGPKVDIWSLGIMAIEMVEGEPP 214
Query: 394 YFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTP 453
Y N N + ALY IA N TP LQ+ + +SA+
Sbjct: 215 YLNENPLRALYLIATNGTPELQNPE---------------------KLSAI--------- 244
Query: 454 CLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRTKAAVR 512
F F++ CL + R S+ LL H + + S L LI K A +
Sbjct: 245 ----------FRDFLNRCLEMDVEKRGSAKELLQHPFLKIAKPLSSLTPLIAAAKEATK 293
Score = 131 bits (330), Expect = 1e-33
Identities = 65/140 (46%), Positives = 84/140 (60%), Gaps = 10/140 (7%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLR 65
++R+ KHPN + Y YL W+VMEY G S +D+ V + + E +IAA+C L+
Sbjct: 69 VMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQ 126
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANS----FVGTPYWMAPEV 121
L +LHS IHRD+K+ NILL G+VKL DFG + P S VGTPYWMAPEV
Sbjct: 127 ALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV 186
Query: 122 ILAMDEGQYDGKVDVWSLGI 141
+ Y KVD+WSLGI
Sbjct: 187 V---TRKAYGPKVDIWSLGI 203
Score = 63.4 bits (154), Expect = 9e-11
Identities = 45/113 (39%), Positives = 59/113 (52%), Gaps = 15/113 (13%)
Query: 602 NNNNSNY--SSLFSPQL--VMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLH 656
+ N NY S L +L VMEY G S +D+ V + + E +IAA+C L+ L +LH
Sbjct: 75 HPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQALEFLH 132
Query: 657 SLGRIHRDVKAGNILLTETGTVKLDTPDEQAGNDSSKSNSITSEHSVQSVGVG 709
S IHRD+K+ NILL G+VKL D IT E S +S VG
Sbjct: 133 SNQVIHRDIKSDNILLGMDGSVKL--------TDFGFCAQITPEQSKRSTMVG 177
>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein
Serine/Threonine Kinases, Mitogen-Activated Protein
Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6
(or MAP4K6) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAP4K4/MAP4K6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain. MAP4Ks (or
MAPKKKKs) are involved in MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAP4K4 is also called Nck Interacting kinase
(NIK). It facilitates the activation of the MAPKs,
extracellular signal-regulated kinase (ERK) 1, ERK2, and
c-Jun N-terminal kinase (JNK), by phosphorylating and
activating MEKK1. MAP4K4 plays a role in tumor necrosis
factor (TNF) alpha-induced insulin resistance. MAP4K4
silencing in skeletal muscle cells from type II diabetic
patients restores insulin-mediated glucose uptake.
MAP4K4, through JNK, also plays a broad role in cell
motility, which impacts inflammation, homeostasis, as
well as the invasion and spread of cancer. MAP4K4 is
found to be highly expressed in most tumor cell lines
relative to normal tissue. MAP4K6 (also called MINK for
Misshapen/NIKs-related kinase) is activated after Ras
induction and mediates activation of p38 MAPK. MAP4K6
plays a role in cell cycle arrest, cytoskeleton
organization, cell adhesion, and cell motility.
Length = 282
Score = 180 bits (459), Expect = 2e-51
Identities = 126/362 (34%), Positives = 172/362 (47%), Gaps = 96/362 (26%)
Query: 145 SLKDPEIAELFDKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAE 204
SL D +++ L DP IFE + +G+G++G VY R + + ++ AIK M +
Sbjct: 2 SLDDIDLSAL---RDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDV----TED 54
Query: 205 KWADILKEIRFLRQLKHPNTIE-YRGCYLR------DHTAWLVMEYC-LGSASDIIEVHW 256
+ +I EI L++ H I Y G +++ D WLVME+C GS +D+++
Sbjct: 55 EEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVK--- 111
Query: 257 IEREFHVEGMGNRLQQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGR 316
GN LKE+ IA IC +LRGL +LH+
Sbjct: 112 -------NTKGN----------------------ALKEDWIAYICREILRGLAHLHAHKV 142
Query: 317 IHRDVKAGNILLTETGTVKLADFG-SASIKCPA---NSFVGTPYWMAPEVILAMDE---G 369
IHRD+K N+LLTE VKL DFG SA + N+F+GTPYWMAPEVI A DE
Sbjct: 143 IHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVI-ACDENPDA 201
Query: 370 QYDGKVDVWSLGITCIELAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTA 429
YD + D+WSLGIT IE+AE PP +M+ M AL+ I +N
Sbjct: 202 TYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRN-------------------- 241
Query: 430 ERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHD 489
PP P L+S WS F F+ CL KN RPS+ +LL H
Sbjct: 242 ---PP------------------PKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLKHP 280
Query: 490 LV 491
+
Sbjct: 281 FI 282
Score = 123 bits (310), Expect = 3e-31
Identities = 71/145 (48%), Positives = 90/145 (62%), Gaps = 16/145 (11%)
Query: 13 HPNTIEYRGCYLR------DHTAWLVMEYC-LGSASDIIEVHK-RPLKEEEIAAICSGVL 64
H N Y G +++ D WLVME+C GS +D+++ K LKE+ IA IC +L
Sbjct: 72 HRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREIL 131
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPA---NSFVGTPYWMAPE 120
RGL +LH+ IHRD+K N+LLTE VKL DFG SA + N+F+GTPYWMAPE
Sbjct: 132 RGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPE 191
Query: 121 VILAMDE---GQYDGKVDVWSLGIT 142
VI A DE YD + D+WSLGIT
Sbjct: 192 VI-ACDENPDATYDYRSDIWSLGIT 215
Score = 68.9 bits (168), Expect = 1e-12
Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 12/100 (12%)
Query: 593 VTHLSQHSYNNNNSNYSSLF---SPQ-------LVMEYC-LGSASDIIEVHK-RPLKEEE 640
+ L ++S++ N + Y F SP LVME+C GS +D+++ K LKE+
Sbjct: 63 INMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDW 122
Query: 641 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
IA IC +LRGL +LH+ IHRD+K N+LLTE VKL
Sbjct: 123 IAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKL 162
>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Traf2- and Nck-interacting
kinase. Serine/threonine kinases (STKs), Traf2- and
Nck-interacting kinase (TNIK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The TNIK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to mitogen-activated protein kinase (MAPK),
kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks
participate in some MAPK signaling pathways by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). TNIK is an effector of Rap2, a small GTP-binding
protein from the Ras family. TNIK specifically activates
the c-Jun N-terminal kinase (JNK) pathway and plays a
role in regulating the actin cytoskeleton.
Length = 272
Score = 179 bits (454), Expect = 6e-51
Identities = 125/348 (35%), Positives = 167/348 (47%), Gaps = 93/348 (26%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DP IFE + +G+G++G VY R + + ++ AIK M G + E I +EI L++
Sbjct: 3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEE----IKQEINMLKK 58
Query: 219 LKH-PNTIEYRGCYLR------DHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRL 270
H N Y G +++ D WLVME+C GS +D+I+ GN
Sbjct: 59 YSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIK----------NTKGN-- 106
Query: 271 QQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 330
LKEE IA IC +LRGL++LH IHRD+K N+LLTE
Sbjct: 107 --------------------TLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTE 146
Query: 331 TGTVKLADFG-SASIKCPA---NSFVGTPYWMAPEVILAMDE---GQYDGKVDVWSLGIT 383
VKL DFG SA + N+F+GTPYWMAPEVI A DE YD K D+WSLGIT
Sbjct: 147 NAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVI-ACDENPDATYDFKSDLWSLGIT 205
Query: 384 CIELAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSA 443
IE+AE PP C +M+ M A
Sbjct: 206 AIEMAEGAPPL------------------C-----------------------DMHPMRA 224
Query: 444 LYHIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
L+ I +N P L+S WS F F+ SCL KN + RP++ +L+ H +
Sbjct: 225 LFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMKHPFI 272
Score = 123 bits (309), Expect = 3e-31
Identities = 74/145 (51%), Positives = 90/145 (62%), Gaps = 16/145 (11%)
Query: 13 HPNTIEYRGCYLR------DHTAWLVMEYC-LGSASDIIEVHK-RPLKEEEIAAICSGVL 64
H N Y G +++ D WLVME+C GS +D+I+ K LKEE IA IC +L
Sbjct: 62 HRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREIL 121
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPA---NSFVGTPYWMAPE 120
RGL++LH IHRD+K N+LLTE VKL DFG SA + N+F+GTPYWMAPE
Sbjct: 122 RGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPE 181
Query: 121 VILAMDE---GQYDGKVDVWSLGIT 142
VI A DE YD K D+WSLGIT
Sbjct: 182 VI-ACDENPDATYDFKSDLWSLGIT 205
Score = 68.2 bits (166), Expect = 2e-12
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 12/100 (12%)
Query: 593 VTHLSQHSYNNNNSNYSSLFSPQ----------LVMEYC-LGSASDIIEVHK-RPLKEEE 640
+ L ++S++ N + Y F + LVME+C GS +D+I+ K LKEE
Sbjct: 53 INMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEW 112
Query: 641 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
IA IC +LRGL++LH IHRD+K N+LLTE VKL
Sbjct: 113 IAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKL 152
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 177 bits (450), Expect = 8e-51
Identities = 81/226 (35%), Positives = 115/226 (50%), Gaps = 43/226 (19%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYRG 229
+G G FG VY AR + + VAIK + + + ++L+EI L++L HPN ++ G
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKK--EDSSSLLEELLREIEILKKLNHPNIVKLYG 58
Query: 230 CYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEVH 288
+ ++ +LVMEYC GS D++ + +
Sbjct: 59 VFEDENHLYLVMEYCEGGSLKDLL---------------------------------KEN 85
Query: 289 KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE-TGTVKLADFGSASI--- 344
+ L E+EI I +L GL YLHS G IHRD+K NILL G VKLADFG + +
Sbjct: 86 EGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTS 145
Query: 345 -KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
K + VGTP +MAPEV+ + +G Y K D+WSLG+ EL E
Sbjct: 146 DKSLLKTIVGTPAYMAPEVL--LGKGYYSEKSDIWSLGVILYELPE 189
Score = 153 bits (388), Expect = 2e-42
Identities = 63/142 (44%), Positives = 89/142 (62%), Gaps = 8/142 (5%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLR 65
+L++L HPN ++ G + ++ +LVMEYC GS D+++ ++ L E+EI I +L
Sbjct: 44 ILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILE 103
Query: 66 GLNYLHSLGRIHRDVKAGNILLTE-TGTVKLADFGSASI----KCPANSFVGTPYWMAPE 120
GL YLHS G IHRD+K NILL G VKLADFG + + K + VGTP +MAPE
Sbjct: 104 GLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPE 163
Query: 121 VILAMDEGQYDGKVDVWSLGIT 142
V+ + +G Y K D+WSLG+
Sbjct: 164 VL--LGKGYYSEKSDIWSLGVI 183
Score = 77.3 bits (191), Expect = 5e-16
Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 616 LVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
LVMEYC GS D+++ ++ L E+EI I +L GL YLHS G IHRD+K NILL
Sbjct: 68 LVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDS 127
Query: 675 -TGTVKL 680
G VKL
Sbjct: 128 DNGKVKL 134
Score = 30.7 bits (70), Expect = 2.1
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 447 IAQNDTPCLQSSD-WS--------DTFAHFVSSCLAKNPADRPSSGRLLTH 488
+ + SD WS + L K+P RPS+ +L H
Sbjct: 164 VLLGKGYYSEKSDIWSLGVILYELPELKDLIRKMLQKDPEKRPSAKEILEH 214
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 177 bits (449), Expect = 5e-50
Identities = 114/357 (31%), Positives = 164/357 (45%), Gaps = 82/357 (22%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
+PE+ +E + E+G G+FG VY A+ ++E + + + E+ D + EI L
Sbjct: 2 NPEEFWEIIGELGDGAFGKVYKAQ---NKETGVLAAAKVIDTKSEEELEDYMVEIDILAS 58
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
HPN ++ + ++ W+++E+C G A D + +E E
Sbjct: 59 CDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAV---MLELE------------------ 97
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
RPL E +I +C L LNYLH IHRD+KAGNIL T G +KLAD
Sbjct: 98 -----------RPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLAD 146
Query: 339 FGSASIKCPA----NSFVGTPYWMAPEVIL--AMDEGQYDGKVDVWSLGITCIELAERKP 392
FG ++ +SF+GTPYWMAPEV++ + YD K DVWSLGIT IE+A+ +P
Sbjct: 147 FGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEP 206
Query: 393 PYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDT 452
P+ +N M L IA+++ P L
Sbjct: 207 PHHELNPMRVLLKIAKSEPPTLA------------------------------------- 229
Query: 453 PCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRTKA 509
Q S WS F F+ CL KN R ++ +LL H VT S + +LI KA
Sbjct: 230 ---QPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQHPFVT-VNSNKPIRELIAEAKA 282
Score = 128 bits (322), Expect = 9e-33
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 7/143 (4%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVH-KRPLKEEEIAAICSGVLR 65
+L HPN ++ + ++ W+++E+C G A D + + +RPL E +I +C L
Sbjct: 55 ILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLE 114
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPA----NSFVGTPYWMAPEV 121
LNYLH IHRD+KAGNIL T G +KLADFG ++ +SF+GTPYWMAPEV
Sbjct: 115 ALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEV 174
Query: 122 IL--AMDEGQYDGKVDVWSLGIT 142
++ + YD K DVWSLGIT
Sbjct: 175 VMCETSKDRPYDYKADVWSLGIT 197
Score = 66.6 bits (162), Expect = 7e-12
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 589 HHHPVTHLSQHSYNNNNSNYSSLFSPQLVMEYCLGSASDIIEVH-KRPLKEEEIAAICSG 647
H + V L Y NN +++E+C G A D + + +RPL E +I +C
Sbjct: 61 HPNIVKLLDAFYYENN---------LWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQ 111
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
L LNYLH IHRD+KAGNIL T G +KL
Sbjct: 112 TLEALNYLHENKIIHRDLKAGNILFTLDGDIKL 144
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 176 bits (448), Expect = 6e-50
Identities = 90/330 (27%), Positives = 136/330 (41%), Gaps = 85/330 (25%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+E +++IG GSFG VY R ++ +K++ E+ D L E++ L++L HPN
Sbjct: 2 YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKER-EDALNEVKILKKLNHPN 60
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
I+Y + +VMEY +G G+ Q++K
Sbjct: 61 IIKYYESFEEKGKLCIVMEYA-------------------DG-GDLSQKIK--------- 91
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA- 342
+ +P EE+I + L YLHS +HRD+K NI LT G VKL DFG +
Sbjct: 92 KQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISK 151
Query: 343 ---SIKCPANSFVGTPYWMAPEVILAMDEGQ-YDGKVDVWSLGITCI--ELAERKPPYFN 396
S A + VGTPY+++PE+ + + Y+ K D+WSLG C+ EL K P F
Sbjct: 152 VLSSTVDLAKTVVGTPYYLSPELC----QNKPYNYKSDIWSLG--CVLYELCTLKHP-FE 204
Query: 397 MNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQ 456
+ L K + P +
Sbjct: 205 GENLLELAL-----------------KILKGQYPPIPSQY-------------------- 227
Query: 457 SSDWSDTFAHFVSSCLAKNPADRPSSGRLL 486
S + VSS L K+P +RPS ++L
Sbjct: 228 ----SSELRNLVSSLLQKDPEERPSIAQIL 253
Score = 134 bits (340), Expect = 2e-35
Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 13/143 (9%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHK---RPLKEEEIAAICSG 62
+L++L HPN I+Y + +VMEY G S I+ K +P EE+I
Sbjct: 52 ILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQ 111
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA----SIKCPANSFVGTPYWMA 118
+ L YLHS +HRD+K NI LT G VKL DFG + S A + VGTPY+++
Sbjct: 112 LCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLS 171
Query: 119 PEVILAMDEGQ-YDGKVDVWSLG 140
PE+ + + Y+ K D+WSLG
Sbjct: 172 PELC----QNKPYNYKSDIWSLG 190
Score = 63.7 bits (156), Expect = 5e-11
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 617 VMEYC-LGSASDIIEVHK---RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
VMEY G S I+ K +P EE+I + L YLHS +HRD+K NI L
Sbjct: 77 VMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFL 136
Query: 673 TETGTVKL 680
T G VKL
Sbjct: 137 TSNGLVKL 144
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar
proteins. Protein kinases (PKs), MAP kinase kinase
(MAPKK) subfamily, Plant MAPKKs and similar proteins,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is
important in differentiation and virulence.
Dictyostelium discoideum MEK1 is required for proper
chemotaxis. MEK1 null mutants display severe defects in
cell polarization and directional movement. Plants
contain multiple MAPKKs like other eukaryotes. The
Arabidopsis genome encodes for 10 MAPKKs while poplar
and rice contain 13 MAPKKs each. The functions of these
proteins have not been fully elucidated. There is
evidence to suggest that MAPK cascades are involved in
plant stress responses. In Arabidopsis, MKK3 plays a
role in pathogen signaling, MKK2 is involved in cold and
salt stress signaling, MKK4/MKK5 participates in innate
immunity, and MKK7 regulates basal and systemic acquired
resistance.
Length = 264
Score = 173 bits (440), Expect = 7e-49
Identities = 89/336 (26%), Positives = 145/336 (43%), Gaps = 85/336 (25%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
E ++ +G GS G VY R + +I A+KK+ G + K +L+E++ LR + P
Sbjct: 3 LERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRK--QLLRELKTLRSCESPY 60
Query: 224 TIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
++ G + ++ +V+EY GS +D+++
Sbjct: 61 VVKCYGAFYKEGEISIVLEYMDGGSLADLLKKV--------------------------- 93
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHS-LGRIHRDVKAGNILLTETGTVKLADFG- 340
+ E +A I +L+GL+YLH+ IHRD+K N+L+ G VK+ADFG
Sbjct: 94 -------GKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGI 146
Query: 341 SASIKC---PANSFVGTPYWMAPEVILAMDEGQYDG-KVDVWSLGITCIELAERKPPYFN 396
S ++ N+FVGT +M+PE I +G+ D+WSLG+T +E A K P+
Sbjct: 147 SKVLENTLDQCNTFVGTVTYMSPERI----QGESYSYAADIWSLGLTLLECALGKFPFLP 202
Query: 397 MNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQ 456
S +F + + I P L
Sbjct: 203 PGQPS---------------------------------FFEL-----MQAICDGPPPSLP 224
Query: 457 SSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVT 492
+ ++S F F+S+CL K+P RPS+ LL H +
Sbjct: 225 AEEFSPEFRDFISACLQKDPKKRPSAAELLQHPFIK 260
Score = 118 bits (298), Expect = 9e-30
Identities = 50/142 (35%), Positives = 81/142 (57%), Gaps = 12/142 (8%)
Query: 8 LRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
LR + P ++ G + ++ +V+EY GS +D+++ + E +A I +L+G
Sbjct: 53 LRSCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKKVG-KIPEPVLAYIARQILKG 111
Query: 67 LNYLHS-LGRIHRDVKAGNILLTETGTVKLADFG-SASIKC---PANSFVGTPYWMAPEV 121
L+YLH+ IHRD+K N+L+ G VK+ADFG S ++ N+FVGT +M+PE
Sbjct: 112 LDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPER 171
Query: 122 ILAMDEGQYDG-KVDVWSLGIT 142
I +G+ D+WSLG+T
Sbjct: 172 I----QGESYSYAADIWSLGLT 189
Score = 66.5 bits (163), Expect = 5e-12
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 616 LVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHS-LGRIHRDVKAGNILLT 673
+V+EY GS +D+++ + E +A I +L+GL+YLH+ IHRD+K N+L+
Sbjct: 76 IVLEYMDGGSLADLLKKVG-KIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLIN 134
Query: 674 ETGTVKL 680
G VK+
Sbjct: 135 SKGEVKI 141
>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity
Protein Kinase, Mitogen-Activated Protein Kinase Kinase.
Protein kinases (PKs), MAP kinase kinase (MAPKK)
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK or MAP2K), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK or
MAP3K). MAPKKs are dual-specificity PKs that
phosphorylate their downstream targets, MAPKs, at
specific threonine and tyrosine residues. There are
three MAPK subfamilies: extracellular signal-regulated
kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In
mammalian cells, there are seven MAPKKs (named MKK1-7)
and 20 MAPKKKs. Each MAPK subfamily can be activated by
at least two cognate MAPKKs and by multiple MAPKKKs.
Length = 265
Score = 169 bits (431), Expect = 1e-47
Identities = 93/338 (27%), Positives = 133/338 (39%), Gaps = 86/338 (25%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKM-----SYLGKQCAEKWADILKEIRFLRQ 218
E L E+G G+ G V + +I+A+K + + KQ IL+E+ L +
Sbjct: 3 LEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQ-------ILRELDILHK 55
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
P + + G + + + MEY G + D I
Sbjct: 56 CNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKI-------------------------- 89
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHS-LGRIHRDVKAGNILLTETGTVKLA 337
+ + + E + I VL+GL YLH IHRDVK NIL+ G +KL
Sbjct: 90 ------LKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLC 143
Query: 338 DFGSAS--IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYF 395
DFG + + A +FVGT +MAPE I Y K D+WSLG++ IELA + PY
Sbjct: 144 DFGVSGQLVNSLAKTFVGTSSYMAPERI---QGNDYSVKSDIWSLGLSLIELATGRFPYP 200
Query: 396 NMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCL 455
+ND P L +I P L
Sbjct: 201 P-----------ENDPP-------------------------DGIFELLQYIVNEPPPRL 224
Query: 456 QSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTR 493
S +S F FV+ CL K+P +RPS LL H + +
Sbjct: 225 PSGKFSPDFQDFVNLCLIKDPRERPSYKELLEHPFIKK 262
Score = 124 bits (313), Expect = 1e-31
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 13/146 (8%)
Query: 7 LLRQLK------HPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAI 59
+LR+L P + + G + + + MEY GS I++ + + E + I
Sbjct: 46 ILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKI 105
Query: 60 CSGVLRGLNYLHS-LGRIHRDVKAGNILLTETGTVKLADFGSAS--IKCPANSFVGTPYW 116
VL+GL YLH IHRDVK NIL+ G +KL DFG + + A +FVGT +
Sbjct: 106 AVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVGTSSY 165
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGIT 142
MAPE I Y K D+WSLG++
Sbjct: 166 MAPERI---QGNDYSVKSDIWSLGLS 188
Score = 65.4 bits (160), Expect = 1e-11
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 601 YNNNNSNYSSLFSPQLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHS-L 658
YNN + + + MEY GS I++ + + E + I VL+GL YLH
Sbjct: 69 YNNGDIS--------ICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKH 120
Query: 659 GRIHRDVKAGNILLTETGTVKL 680
IHRDVK NIL+ G +KL
Sbjct: 121 KIIHRDVKPSNILVNSRGQIKL 142
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 166 bits (423), Expect = 1e-46
Identities = 94/327 (28%), Positives = 135/327 (41%), Gaps = 81/327 (24%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYL--GKQCAEKWADILKEIRFLRQLKHPNTIEY 227
+G GSFG+VY L + A+K++S G+ E + +EI L +L+HPN ++Y
Sbjct: 8 LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQY 67
Query: 228 RGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEV 287
G + ++ +E G G+ + LK +
Sbjct: 68 LGTEREEDNLYIFLELVPG--------------------GSLAKLLKKYG---------- 97
Query: 288 HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SI 344
E I +L GL YLH +HRD+K NIL+ G VKLADFG A
Sbjct: 98 ---SFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVE 154
Query: 345 KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMSALY 404
A SF G+PYWMAPEVI +G Y D+WSLG T +E+A KPP+ S L
Sbjct: 155 FSFAKSFKGSPYWMAPEVI--AQQGGYGLAADIWSLGCTVLEMATGKPPW------SQLE 206
Query: 405 HIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSDTF 464
+A A++ I ++ SD
Sbjct: 207 GVA-----------------------------------AVFKIGRSKELPPIPDHLSDEA 231
Query: 465 AHFVSSCLAKNPADRPSSGRLLTHDLV 491
F+ CL ++P+ RP++ LL H V
Sbjct: 232 KDFILKCLQRDPSLRPTAAELLEHPFV 258
Score = 128 bits (323), Expect = 4e-33
Identities = 56/141 (39%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVL 64
+LL +L+HPN ++Y G + ++ +E GS + +++ + E I +L
Sbjct: 54 ALLSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKYG-SFPEPVIRLYTRQIL 112
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SIKCPANSFVGTPYWMAPEV 121
GL YLH +HRD+K NIL+ G VKLADFG A A SF G+PYWMAPEV
Sbjct: 113 LGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEV 172
Query: 122 ILAMDEGQYDGKVDVWSLGIT 142
I +G Y D+WSLG T
Sbjct: 173 I--AQQGGYGLAADIWSLGCT 191
Score = 51.7 bits (124), Expect = 4e-07
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 635 PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
E I +L GL YLH +HRD+K NIL+ G VKL
Sbjct: 98 SFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKL 143
>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 3.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 3, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK3 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK3 is
highly expressed in the brain. It is implicated in
neuronal plasticity, synapse formation, dendritic spine
morphogenesis, cell cycle progression, neuronal
migration, and apoptosis. Inactivating mutations in the
PAK3 gene cause X-linked non-syndromic mental
retardation, the severity of which depends on the site
of the mutation.
Length = 297
Score = 166 bits (422), Expect = 3e-46
Identities = 120/360 (33%), Positives = 164/360 (45%), Gaps = 86/360 (23%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DP+K + +IG G+ G VY A + + + VAIK+M+ Q K I+ EI +R+
Sbjct: 16 DPKKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNL---QQQPKKELIINEILVMRE 72
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
K+PN + Y YL W+VMEY G S +D+
Sbjct: 73 NKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV-------------------------- 106
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
V + + E +IAA+C L+ L++LHS IHRD+K+ NILL G+VKL
Sbjct: 107 ---------VTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLT 157
Query: 338 DFGSASIKCPANS----FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP 393
DFG + P S VGTPYWMAPEV+ Y KVD+WSLGI IE+ E +PP
Sbjct: 158 DFGFCAQITPEQSKRSTMVGTPYWMAPEVV---TRKAYGPKVDIWSLGIMAIEMVEGEPP 214
Query: 394 YFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTP 453
Y N N + ALY IA N TP LQ N +SA+
Sbjct: 215 YLNENPLRALYLIATNGTPELQ---------------------NPERLSAV--------- 244
Query: 454 CLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRTKAAVRD 513
F F++ CL + R S+ LL H + + S L LI K A+++
Sbjct: 245 ----------FRDFLNRCLEMDVDRRGSAKELLQHPFLKLAKPLSSLTPLIIAAKEAIKN 294
Score = 115 bits (288), Expect = 3e-28
Identities = 64/140 (45%), Positives = 85/140 (60%), Gaps = 10/140 (7%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLR 65
++R+ K+PN + Y YL W+VMEY G S +D+ V + + E +IAA+C L+
Sbjct: 69 VMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQ 126
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANS----FVGTPYWMAPEV 121
L++LHS IHRD+K+ NILL G+VKL DFG + P S VGTPYWMAPEV
Sbjct: 127 ALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV 186
Query: 122 ILAMDEGQYDGKVDVWSLGI 141
+ Y KVD+WSLGI
Sbjct: 187 V---TRKAYGPKVDIWSLGI 203
Score = 57.4 bits (138), Expect = 9e-09
Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Query: 602 NNNNSNY--SSLFSPQL--VMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLH 656
N N NY S L +L VMEY G S +D+ V + + E +IAA+C L+ L++LH
Sbjct: 75 NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQALDFLH 132
Query: 657 SLGRIHRDVKAGNILLTETGTVKLDTPDEQAGNDSSKSNSITSEHSVQSVGVG 709
S IHRD+K+ NILL G+VKL D IT E S +S VG
Sbjct: 133 SNQVIHRDIKSDNILLGMDGSVKL--------TDFGFCAQITPEQSKRSTMVG 177
>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 1.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 1, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK1 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK1 is
important in the regulation of many cellular processes
including cytoskeletal dynamics, cell motility, growth,
and proliferation. Although PAK1 has been regarded
mainly as a cytosolic protein, recent reports indicate
that PAK1 also exists in significant amounts in the
nucleus, where it is involved in transcription
modulation and in cell cycle regulatory events. PAK1 is
also involved in transformation and tumorigenesis. Its
overexpression, hyperactivation and increased nuclear
accumulation is correlated to breast cancer invasiveness
and progression. Nuclear accumulation is also linked to
tamoxifen resistance in breast cancer cells.
Length = 296
Score = 165 bits (418), Expect = 1e-45
Identities = 119/360 (33%), Positives = 162/360 (45%), Gaps = 86/360 (23%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DP+K + +IG G+ G VY A + + + VAI++M+ Q K I+ EI +R+
Sbjct: 17 DPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL---QQQPKKELIINEILVMRE 73
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
K+PN + Y YL W+VMEY G S +D+
Sbjct: 74 NKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV-------------------------- 107
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
V + + E +IAA+C L+ L +LHS IHRD+K+ NILL G+VKL
Sbjct: 108 ---------VTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLT 158
Query: 338 DFGSASIKCPANS----FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP 393
DFG + P S VGTPYWMAPEV+ Y KVD+WSLGI IE+ E +PP
Sbjct: 159 DFGFCAQITPEQSKRSTMVGTPYWMAPEVV---TRKAYGPKVDIWSLGIMAIEMIEGEPP 215
Query: 394 YFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTP 453
Y N N + ALY IA N TP LQ N +SA+
Sbjct: 216 YLNENPLRALYLIATNGTPELQ---------------------NPEKLSAI--------- 245
Query: 454 CLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRTKAAVRD 513
F F++ CL + R S+ LL H + + S L LI K A ++
Sbjct: 246 ----------FRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKPLSSLTPLIAAAKEATKN 295
Score = 114 bits (286), Expect = 6e-28
Identities = 64/140 (45%), Positives = 84/140 (60%), Gaps = 10/140 (7%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLR 65
++R+ K+PN + Y YL W+VMEY G S +D+ V + + E +IAA+C L+
Sbjct: 70 VMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQ 127
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANS----FVGTPYWMAPEV 121
L +LHS IHRD+K+ NILL G+VKL DFG + P S VGTPYWMAPEV
Sbjct: 128 ALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV 187
Query: 122 ILAMDEGQYDGKVDVWSLGI 141
+ Y KVD+WSLGI
Sbjct: 188 V---TRKAYGPKVDIWSLGI 204
Score = 55.5 bits (133), Expect = 3e-08
Identities = 46/113 (40%), Positives = 59/113 (52%), Gaps = 15/113 (13%)
Query: 602 NNNNSNY--SSLFSPQL--VMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLH 656
N N NY S L +L VMEY G S +D+ V + + E +IAA+C L+ L +LH
Sbjct: 76 NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQALEFLH 133
Query: 657 SLGRIHRDVKAGNILLTETGTVKLDTPDEQAGNDSSKSNSITSEHSVQSVGVG 709
S IHRD+K+ NILL G+VKL D IT E S +S VG
Sbjct: 134 SNQVIHRDIKSDNILLGMDGSVKL--------TDFGFCAQITPEQSKRSTMVG 178
>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 4.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 4, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK4 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK4 regulates cell morphology and
cytoskeletal organization. It is essential for embryonic
viability and proper neural development. Mice lacking
PAK4 die due to defects in the fetal heart. In addition,
their spinal cord motor neurons showed failure to
differentiate and migrate. PAK4 also plays a role in
cell survival and tumorigenesis. It is overexpressed in
many primary tumors including colon, esophageal, and
mammary tumors. PAK4 has also been implicated in viral
and bacterial infection pathways.
Length = 292
Score = 161 bits (408), Expect = 2e-44
Identities = 112/358 (31%), Positives = 163/358 (45%), Gaps = 86/358 (24%)
Query: 156 DKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRF 215
D DP ++ +IG GS G V A S ++VA+KKM +Q E + E+
Sbjct: 14 DPGDPRTYLDNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRREL---LFNEVVI 70
Query: 216 LRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSA-SDIIEVHWIEREFHVEGMGNRLQQLK 274
+R +H N +E YL W+VME+ G A +DI+
Sbjct: 71 MRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIV---------------------- 108
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
H R + EE+IAA+C VL+ L+ LH+ G IHRD+K+ +ILLT G V
Sbjct: 109 ------------THTR-MNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRV 155
Query: 335 KLADFG---SASIKCP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 390
KL+DFG S + P S VGTPYWMAPE+I + Y +VD+WSLGI IE+ +
Sbjct: 156 KLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRL---PYGPEVDIWSLGIMVIEMVDG 212
Query: 391 KPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQN 450
+PPYFN + A+ I N P L++
Sbjct: 213 EPPYFNEPPLKAMKMIRDNLPPKLKN-------------------------------LHK 241
Query: 451 DTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRTK 508
+P L+ F+ L ++PA R ++ LL H + + PS +V L+R+ +
Sbjct: 242 VSPSLKG---------FLDRLLVRDPAQRATAAELLKHPFLAKAGPPSCIVPLMRQNR 290
Score = 120 bits (303), Expect = 3e-30
Identities = 69/158 (43%), Positives = 92/158 (58%), Gaps = 16/158 (10%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
++R +H N +E YL W+VME+ G A I H R + EE+IAA+C VL+
Sbjct: 70 IMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTR-MNEEQIAAVCLAVLKA 128
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFG---SASIKCP-ANSFVGTPYWMAPEVI 122
L+ LH+ G IHRD+K+ +ILLT G VKL+DFG S + P S VGTPYWMAPE+I
Sbjct: 129 LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELI 188
Query: 123 LAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDP 160
+ Y +VD+WSLGI + E+ D E P
Sbjct: 189 SRL---PYGPEVDIWSLGIM--------VIEMVDGEPP 215
Score = 63.9 bits (155), Expect = 5e-11
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 586 RHHHHHPVTHLSQHSYNNNNSNYSSLFSPQL--VMEYCLGSASDIIEVHKRPLKEEEIAA 643
R + H V + YN S L +L VME+ G A I H R + EE+IAA
Sbjct: 72 RDYQHENVVEM----YN------SYLVGDELWVVMEFLEGGALTDIVTHTR-MNEEQIAA 120
Query: 644 ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+C VL+ L+ LH+ G IHRD+K+ +ILLT G VKL
Sbjct: 121 VCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKL 157
>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase
adapter protein. Protein Kinase family, STE20-related
kinase adapter protein (STRAD) subfamily, pseudokinase
domain. The STRAD subfamily is part of a larger
superfamily that includes the catalytic domains of
serine/threonine kinases (STKs), protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
pseudokinase domain shows similarity to protein kinases
but lacks crucial residues for catalytic activity. STRAD
forms a complex with the scaffolding protein MO25, and
the STK, LKB1, resulting in the activation of the
kinase. In the complex, LKB1 phosphorylates and
activates adenosine monophosphate-activated protein
kinases (AMPKs), which regulate cell energy metabolism
and cell polarity. LKB1 is a tumor suppressor linked to
the rare inherited disease, Peutz-Jeghers syndrome,
which is characterized by a predisposition to benign
polyps and hyperpigmentation of the buccal mucosa. There
are two forms of STRAD, alpha and beta, that complex
with LKB1 and MO25. The structure of STRAD-alpha is
available and shows that this protein binds ATP, has an
ordered activation loop, and adopts a closed
conformation typical of fully active protein kinases. It
does not possess activity due to nonconservative
substitutions of essential catalytic residues. ATP
binding enhances the affinity of STRAD for MO25. The
conformation of STRAD-alpha stabilized through ATP and
MO25 may be needed to activate LKB1.
Length = 314
Score = 159 bits (405), Expect = 1e-43
Identities = 95/354 (26%), Positives = 144/354 (40%), Gaps = 58/354 (16%)
Query: 167 LREIGHGSFGA--VYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
L IG V+ A+ + +VA+KK++ L E + +EI RQL+HPN
Sbjct: 3 LTLIGKCFEDLMIVHLAKHKPTNTLVAVKKIN-LDSCSKEDLKLLQQEIITSRQLQHPNI 61
Query: 225 IEYRGCYLRDHTAWLVMEY-CLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ Y ++ D ++V GS D+++ H+ EG+
Sbjct: 62 LPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHF------PEGL----------------- 98
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS-- 341
E IA I VL L+Y+HS G IHR VKA +ILL+ G V L+
Sbjct: 99 ---------PELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSV 149
Query: 342 ---------ASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP 392
+ S V W++PEV L + Y+ K D++S+GIT ELA
Sbjct: 150 SMIKHGKRQRVVHDFPKSSVKNLPWLSPEV-LQQNLQGYNEKSDIYSVGITACELANGHV 208
Query: 393 PYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDT 452
P+ +M A L + PCL D S + + T
Sbjct: 209 PFKDMPATQMLLEKVRGTVPCLL--DKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRT 266
Query: 453 PCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTR-PRSPSVLVDLIR 505
+S+ F FV CL ++P RPS+ +LL H + R + L+DL++
Sbjct: 267 -------FSEHFHQFVELCLQRDPESRPSASQLLNHSFFKQCKRRNTSLLDLLK 313
Score = 108 bits (271), Expect = 1e-25
Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 9 RQLKHPNTIEYRGCYLRDHTAWLVMEY-CLGSASDIIEVH-KRPLKEEEIAAICSGVLRG 66
RQL+HPN + Y ++ D ++V GS D+++ H L E IA I VL
Sbjct: 54 RQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNA 113
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS-----------ASIKCPANSFVGTPY 115
L+Y+HS G IHR VKA +ILL+ G V L+ + S V
Sbjct: 114 LDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLP 173
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLGIT 142
W++PEV L + Y+ K D++S+GIT
Sbjct: 174 WLSPEV-LQQNLQGYNEKSDIYSVGIT 199
Score = 68.1 bits (167), Expect = 3e-12
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 593 VTHLSQHSYNNNNSNYSSLFSPQ---LVMEY-CLGSASDIIEVH-KRPLKEEEIAAICSG 647
+ QH N +S +V GS D+++ H L E IA I
Sbjct: 52 TSRQLQH--PNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKD 109
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
VL L+Y+HS G IHR VKA +ILL+ G V L
Sbjct: 110 VLNALDYIHSKGFIHRSVKASHILLSGDGKVVL 142
>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 6.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 6, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK6 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK6 may play a role in stress responses
through its activation by the mitogen-activated protein
kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6
is highly expressed in the brain. It is not required for
viability, but together with PAK5, it is required for
normal levels of locomotion and activity, and for
learning and memory. Increased expression of PAK6 is
found in primary and metastatic prostate cancer. PAK6
may play a role in the regulation of motility.
Length = 297
Score = 157 bits (398), Expect = 7e-43
Identities = 111/358 (31%), Positives = 159/358 (44%), Gaps = 86/358 (24%)
Query: 156 DKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRF 215
D+ DP + E+ +IG GS G V AR S VA+K M +Q E + E+
Sbjct: 15 DQGDPRSLLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRREL---LFNEVVI 71
Query: 216 LRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSA-SDIIEVHWIEREFHVEGMGNRLQQLK 274
+R +H N +E YL W++ME+ G A +DI
Sbjct: 72 MRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDI----------------------- 108
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
V + L EE+IA +C VL+ L YLHS G IHRD+K+ +ILLT G V
Sbjct: 109 ------------VSQTRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRV 156
Query: 335 KLADFG---SASIKCPA-NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 390
KL+DFG S P S VGTPYWMAPEVI Y +VD+WSLGI IE+ +
Sbjct: 157 KLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVI---SRTPYGTEVDIWSLGIMVIEMVDG 213
Query: 391 KPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQN 450
+PPYF+ + + A+ + + P L++ A
Sbjct: 214 EPPYFSDSPVQAMKRLRDSPPPKLKN-------------------------------AHK 242
Query: 451 DTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRTK 508
+P L+ F+ L + P +R ++ LL H + + P LV LI++ +
Sbjct: 243 ISPVLRD---------FLERMLTREPQERATAQELLDHPFLLQTGLPECLVPLIQQYR 291
Score = 123 bits (310), Expect = 4e-31
Identities = 71/159 (44%), Positives = 91/159 (57%), Gaps = 18/159 (11%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSA-SDIIEVHKRPLKEEEIAAICSGVLR 65
++R +H N +E YL W++ME+ G A +DI V + L EE+IA +C VL+
Sbjct: 71 IMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDI--VSQTRLNEEQIATVCESVLQ 128
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG---SASIKCPA-NSFVGTPYWMAPEV 121
L YLHS G IHRD+K+ +ILLT G VKL+DFG S P S VGTPYWMAPEV
Sbjct: 129 ALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEV 188
Query: 122 ILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDP 160
I Y +VD+WSLGI + E+ D E P
Sbjct: 189 I---SRTPYGTEVDIWSLGIM--------VIEMVDGEPP 216
Score = 64.3 bits (156), Expect = 5e-11
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 616 LVMEYCLGSA-SDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
++ME+ G A +DI V + L EE+IA +C VL+ L YLHS G IHRD+K+ +ILLT
Sbjct: 95 VLMEFLQGGALTDI--VSQTRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTL 152
Query: 675 TGTVKL 680
G VKL
Sbjct: 153 DGRVKL 158
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 2.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 2, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK2 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK2 plays a
role in pro-apoptotic signaling. It is cleaved and
activated by caspases leading to morphological changes
during apoptosis. PAK2 is also activated in response to
a variety of stresses including DNA damage,
hyperosmolarity, serum starvation, and contact
inhibition, and may play a role in coordinating the
stress response. PAK2 also contributes to cancer cell
invasion through a mechanism distinct from that of PAK1.
Length = 296
Score = 156 bits (396), Expect = 1e-42
Identities = 112/359 (31%), Positives = 164/359 (45%), Gaps = 86/359 (23%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DP+K + +IG G+ G V+ A + + + VAIK+++ L KQ ++ I+ EI +++
Sbjct: 16 DPKKKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQIN-LQKQPKKEL--IINEILVMKE 72
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
LK+PN + + +L ++VMEY G S +D+
Sbjct: 73 LKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDV-------------------------- 106
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
V + + E +IAA+C L+ L +LH+ IHRD+K+ N+LL G+VKL
Sbjct: 107 ---------VTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLT 157
Query: 338 DFGSASIKCPANS----FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP 393
DFG + P S VGTPYWMAPEV+ Y KVD+WSLGI IE+ E +PP
Sbjct: 158 DFGFCAQITPEQSKRSTMVGTPYWMAPEVV---TRKAYGPKVDIWSLGIMAIEMVEGEPP 214
Query: 394 YFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTP 453
Y N N + ALY IA N TP LQ+ +
Sbjct: 215 YLNENPLRALYLIATNGTPELQNPE----------------------------------- 239
Query: 454 CLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRTKAAVR 512
S F F++ CL + R S+ LL H + + S L LI K A++
Sbjct: 240 -----KLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLKLAKPLSSLTPLILAAKEAMK 293
Score = 110 bits (275), Expect = 2e-26
Identities = 59/140 (42%), Positives = 85/140 (60%), Gaps = 10/140 (7%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLR 65
++++LK+PN + + +L ++VMEY G S +D+ V + + E +IAA+C L+
Sbjct: 69 VMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDV--VTETCMDEAQIAAVCRECLQ 126
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANS----FVGTPYWMAPEV 121
L +LH+ IHRD+K+ N+LL G+VKL DFG + P S VGTPYWMAPEV
Sbjct: 127 ALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV 186
Query: 122 ILAMDEGQYDGKVDVWSLGI 141
+ Y KVD+WSLGI
Sbjct: 187 V---TRKAYGPKVDIWSLGI 203
Score = 55.5 bits (133), Expect = 4e-08
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 616 LVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
+VMEY G S +D+ V + + E +IAA+C L+ L +LH+ IHRD+K+ N+LL
Sbjct: 93 VVMEYLAGGSLTDV--VTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGM 150
Query: 675 TGTVKLDTPDEQAGNDSSKSNSITSEHSVQSVGVG 709
G+VKL D IT E S +S VG
Sbjct: 151 DGSVKL--------TDFGFCAQITPEQSKRSTMVG 177
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 155 bits (391), Expect = 3e-41
Identities = 108/434 (24%), Positives = 158/434 (36%), Gaps = 83/434 (19%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+ LR++G GSFG VY AR R++VA+K ++ + +++ L+EI+ L L HP
Sbjct: 2 YRILRKLGEGSFGEVYLAR---DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPP 58
Query: 224 TI-EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
I + + + + +LVMEY G L
Sbjct: 59 NIVKLYDFFQDEGSLYLVMEYVDG------------------------------GSLEDL 88
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGT-VKLADFGS 341
K PL E E I + +L L YLHS G IHRD+K NILL G VKL DFG
Sbjct: 89 LKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGL 148
Query: 342 AS----------IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 391
A I ++ VGTP +MAPEV+L + D+WSLGIT EL
Sbjct: 149 AKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGL 208
Query: 392 PPYFNMNAMS----ALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHI 447
PP+ S L I + TP L S
Sbjct: 209 PPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNP------------------------ 244
Query: 448 AQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRT 507
S + + LAK+P +R SS L+HDL+ + + + +
Sbjct: 245 ----------ELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLKESDLSDLLKP 294
Query: 508 KAAVRDLDNLNYRKMKKILMADGADTESTIDPDDTPDEQAGNDSSKSNSITSEHSVQSVG 567
+ +L I + + D + + +S S +
Sbjct: 295 DDSAPLRLSLPPSLEALISSLNSLAISGSDLKLDDSNFSKELAPNGVSSSPHNSSSLLLS 354
Query: 568 VGVNPHDPTPNSSS 581
+ P S+
Sbjct: 355 TASSKRSSLPKISA 368
Score = 105 bits (262), Expect = 3e-24
Identities = 61/152 (40%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 6 SLLRQLKHPNTI-EYRGCYLRDHTAWLVMEYCLG-SASDIIEVH--KRPLKEEEIAAICS 61
+L L HP I + + + + +LVMEY G S D+++ K PL E E I +
Sbjct: 49 QILASLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILA 108
Query: 62 GVLRGLNYLHSLGRIHRDVKAGNILLTETGT-VKLADFGSAS----------IKCPANSF 110
+L L YLHS G IHRD+K NILL G VKL DFG A I ++
Sbjct: 109 QILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTS 168
Query: 111 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 142
VGTP +MAPEV+L + D+WSLGIT
Sbjct: 169 VGTPGYMAPEVLLGLSLAYASSSSDIWSLGIT 200
Score = 55.5 bits (132), Expect = 6e-08
Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 582 QAHNRHHHHHPVTHLSQHSYNNNNSNYSSLFSPQLVMEYCLG-SASDIIEVH--KRPLKE 638
Q +H + L + + LVMEY G S D+++ K PL E
Sbjct: 49 QILASLNHPPNIVKLYDFFQDEGSLY--------LVMEYVDGGSLEDLLKKIGRKGPLSE 100
Query: 639 EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGT-VKL 680
E I + +L L YLHS G IHRD+K NILL G VKL
Sbjct: 101 SEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKL 143
>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIB myosin.
Serine/threonine kinases (STKs), class IIIB myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
They may also function as cargo carriers during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. Class IIIB
myosin is expressed highly in retina. It is also present
in the brain and testis. The human class IIIB myosin
gene maps to a region that overlaps the locus for
Bardet-Biedl syndrome, which is characterized by
dysmorphic extremities, retinal dystrophy, obesity, male
hypogenitalism, and renal abnormalities.
Length = 291
Score = 152 bits (385), Expect = 4e-41
Identities = 110/345 (31%), Positives = 150/345 (43%), Gaps = 85/345 (24%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DP +E + IG G++G VY + A+K + + E I E L+
Sbjct: 19 DPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEE----IEAEYNILQS 74
Query: 219 L-KHPNTIEYRGCYLR-DHTA----WLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQ 272
L HPN +++ G + + D WLV+E C G + + E+ V+G+
Sbjct: 75 LPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGS--VTEL--------VKGL------ 118
Query: 273 LKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 332
L C + L E I+ I G L GL +LH+ IHRDVK NILLT G
Sbjct: 119 LIC-------------GQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEG 165
Query: 333 TVKLADFGSA----SIKCPANSFVGTPYWMAPEVILAMDE--GQYDGKVDVWSLGITCIE 386
VKL DFG + S + N+ VGTP+WMAPEVI + YD + DVWSLGIT IE
Sbjct: 166 GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIE 225
Query: 387 LAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYH 446
L + PP F+M+ + L+ I +N P L
Sbjct: 226 LGDGDPPLFDMHPVKTLFKIPRNPPPTL-------------------------------- 253
Query: 447 IAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
L W +F HF+S CL K+ RPS LL H +
Sbjct: 254 --------LHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEHPFI 290
Score = 113 bits (283), Expect = 1e-27
Identities = 72/179 (40%), Positives = 101/179 (56%), Gaps = 17/179 (9%)
Query: 3 AGSSLLRQL-KHPNTIEYRGCYLR-DHTA----WLVMEYCLG-SASDIIE---VHKRPLK 52
A ++L+ L HPN +++ G + + D WLV+E C G S +++++ + + L
Sbjct: 67 AEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLD 126
Query: 53 EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA----SIKCPAN 108
E I+ I G L GL +LH+ IHRDVK NILLT G VKL DFG + S + N
Sbjct: 127 EAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRN 186
Query: 109 SFVGTPYWMAPEVILAMDE--GQYDGKVDVWSLGITPGSLKDPEIAELFDKEDPEKIFE 165
+ VGTP+WMAPEVI + YD + DVWSLGIT L D + LFD + +F+
Sbjct: 187 TSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGD-PPLFDMHPVKTLFK 244
Score = 50.8 bits (121), Expect = 1e-06
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 616 LVMEYCLG-SASDIIE---VHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
LV+E C G S +++++ + + L E I+ I G L GL +LH+ IHRDVK NIL
Sbjct: 101 LVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNIL 160
Query: 672 LTETGTVKL 680
LT G VKL
Sbjct: 161 LTTEGGVKL 169
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 2. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2
subfamily includes Aspergillus nidulans NIMA kinase, the
founding member of the Nek family, which was identified
in a screen for cell cycle mutants prevented from
entering mitosis. NIMA is essential for mitotic entry
and progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in
spindle checkpoint. An increase in the expression of the
human NEK2 gene is strongly associated with the
progression of non-Hodgkin lymphoma.
Length = 265
Score = 150 bits (380), Expect = 1e-40
Identities = 99/344 (28%), Positives = 135/344 (39%), Gaps = 96/344 (27%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+E L IG GSFG V R +I+ K++ Y EK ++ E+ LR+LKHPN
Sbjct: 2 YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQ-LVSEVNILRELKHPN 60
Query: 224 TIEYRGCYLRDH-----TAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQL--KCF 276
+ Y Y R T ++VMEYC D L QL KC
Sbjct: 61 IVRY---YDRIIDRSNQTLYIVMEYC--EGGD-------------------LAQLIQKCK 96
Query: 277 TEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGR-----IHRDVKAGNILLTET 331
E ++ ++EE I I + +L L H+ +HRD+K NI L
Sbjct: 97 KE----------RKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDAN 146
Query: 332 GTVKLADFGSASI----KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
VKL DFG A I A ++VGTPY+M+PE + M YD K D+WSLG EL
Sbjct: 147 NNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHM---SYDEKSDIWSLGCLIYEL 203
Query: 388 AERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHI 447
PP+ A + L + I R+ PY
Sbjct: 204 CALSPPF---TARNQL----------------QLASKIKEGKFRRIPYR----------- 233
Query: 448 AQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
+S + S L +P RPS+ LL L+
Sbjct: 234 ------------YSSELNEVIKSMLNVDPDKRPSTEELLQLPLI 265
Score = 116 bits (293), Expect = 5e-29
Identities = 59/153 (38%), Positives = 82/153 (53%), Gaps = 24/153 (15%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDH-----TAWLVMEYCL-GSASDIIEVHKR---PLKEEEI 56
++LR+LKHPN + Y Y R T ++VMEYC G + +I+ K+ ++EE I
Sbjct: 51 NILRELKHPNIVRY---YDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFI 107
Query: 57 AAICSGVLRGLNYLHSLGR-----IHRDVKAGNILLTETGTVKLADFGSASI----KCPA 107
I + +L L H+ +HRD+K NI L VKL DFG A I A
Sbjct: 108 WRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFA 167
Query: 108 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
++VGTPY+M+PE + M YD K D+WSLG
Sbjct: 168 KTYVGTPYYMSPEQLNHM---SYDEKSDIWSLG 197
Score = 48.0 bits (115), Expect = 7e-06
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 616 LVMEYCL-GSASDIIEVHKR---PLKEEEIAAICSGVLRGLNYLHSLGR-----IHRDVK 666
+VMEYC G + +I+ K+ ++EE I I + +L L H+ +HRD+K
Sbjct: 78 IVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLK 137
Query: 667 AGNILLTETGTVKL 680
NI L VKL
Sbjct: 138 PANIFLDANNNVKL 151
>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 258
Score = 146 bits (372), Expect = 1e-39
Identities = 77/329 (23%), Positives = 122/329 (37%), Gaps = 96/329 (29%)
Query: 167 LREIGHGSFGAVYYARCL----VSREIVAIKKMSYLGKQCA--EKWADILKEIRFLRQLK 220
+++G G+FG VY VA+K + K+ A ++ + L+E R +R+L
Sbjct: 4 GKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTL----KEDASEQQIEEFLREARIMRKLD 59
Query: 221 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHF 280
HPN ++ G + +VMEY G G+ L L+
Sbjct: 60 HPNIVKLLGVCTEEEPLMIVMEYMPG--------------------GDLLDYLR------ 93
Query: 281 ALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
+ + L ++ + + RG+ YL S IHRD+ A N L+ E VK++DFG
Sbjct: 94 -----KNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFG 148
Query: 341 ------SASIKCPANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIELAER-KP 392
+ P WMAPE + EG++ K DVWS G+ E+ +
Sbjct: 149 LSRDLYDDDYYKVKGGKL--PIRWMAPESL---KEGKFTSKSDVWSFGVLLWEIFTLGEE 203
Query: 393 PYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDT 452
PY M+ L ++ + R P N LY +
Sbjct: 204 PYPGMSNAEVLEYLKKG--------------------YRLPKPPNCP--PELYKLML--- 238
Query: 453 PCLQSSDWSDTFAHFVSSCLAKNPADRPS 481
C A++P DRP+
Sbjct: 239 -----------------QCWAEDPEDRPT 250
Score = 110 bits (278), Expect = 4e-27
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 44/219 (20%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRP-LKEEEIAAICSGV 63
++R+L HPN ++ G + +VMEY G D + ++ L ++ + +
Sbjct: 53 RIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQI 112
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG------SASIKCPANSFVGTPY-W 116
RG+ YL S IHRD+ A N L+ E VK++DFG + P W
Sbjct: 113 ARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKL--PIRW 170
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDPEKIFEDLREIGHGSFG 176
MAPE + EG++ K DVWS G+ + E+F + G
Sbjct: 171 MAPESL---KEGKFTSKSDVWSFGVL--------LWEIF------------------TLG 201
Query: 177 AVYYARCLVSREIVA-IKKMSYLGK--QCAEKWADILKE 212
Y + + E++ +KK L K C + ++ +
Sbjct: 202 EEPYPG-MSNAEVLEYLKKGYRLPKPPNCPPELYKLMLQ 239
Score = 59.9 bits (146), Expect = 8e-10
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 614 PQLVMEYC-LGSASDIIEVHKRP-LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
+VMEY G D + ++ L ++ + + RG+ YL S IHRD+ A N L
Sbjct: 76 LMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCL 135
Query: 672 LTETGTVK 679
+ E VK
Sbjct: 136 VGENLVVK 143
>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 5.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 5, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK5 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK5 is mainly expressed in the brain. It
is not required for viability, but together with PAK6,
it is required for normal levels of locomotion and
activity, and for learning and memory. PAK5 cooperates
with Inca (induced in neural crest by AP2) in the
regulation of cell adhesion and cytoskeletal
organization in the embryo and in neural crest cells
during craniofacial development. PAK5 may also play a
role in controlling the signaling of Raf-1, an effector
of Ras, at the mitochondria.
Length = 292
Score = 147 bits (373), Expect = 2e-39
Identities = 108/355 (30%), Positives = 155/355 (43%), Gaps = 86/355 (24%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DP + + +IG GS G V A + + VA+KKM +Q E + E+ +R
Sbjct: 19 DPREYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRREL---LFNEVVIMRD 75
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLGSA-SDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
H N ++ YL W+VME+ G A +DI+
Sbjct: 76 YHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIV------------------------- 110
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
H R + EE+IA +C VLR L+YLH+ G IHRD+K+ +ILLT G +KL+
Sbjct: 111 ---------THTR-MNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLS 160
Query: 338 DFG---SASIKCPA-NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP 393
DFG S + P S VGTPYWMAPEVI + Y +VD+WSLGI IE+ + +PP
Sbjct: 161 DFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRL---PYGTEVDIWSLGIMVIEMIDGEPP 217
Query: 394 YFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTP 453
YFN + A+ I N P ++
Sbjct: 218 YFNEPPLQAMRRIRDNLPPRVK-------------------------------------- 239
Query: 454 CLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLVDLIRRTK 508
S S F+ L + P+ R ++ LL H + PS +V L+R+ +
Sbjct: 240 --DSHKVSSVLRGFLDLMLVREPSQRATAQELLQHPFLKLAGPPSCIVPLMRQYR 292
Score = 123 bits (309), Expect = 6e-31
Identities = 72/171 (42%), Positives = 96/171 (56%), Gaps = 19/171 (11%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
++R H N ++ YL W+VME+ G A I H R + EE+IA +C VLR
Sbjct: 72 IMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTHTR-MNEEQIATVCLSVLRA 130
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFG---SASIKCPA-NSFVGTPYWMAPEVI 122
L+YLH+ G IHRD+K+ +ILLT G +KL+DFG S + P S VGTPYWMAPEVI
Sbjct: 131 LSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVI 190
Query: 123 LAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDP---EKIFEDLREI 170
+ Y +VD+WSLGI + E+ D E P E + +R I
Sbjct: 191 SRL---PYGTEVDIWSLGIM--------VIEMIDGEPPYFNEPPLQAMRRI 230
Score = 65.8 bits (160), Expect = 1e-11
Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 13/97 (13%)
Query: 586 RHHHHHPVTHLSQHSYNNNNSNYSSLFSPQL--VMEYCLGSASDIIEVHKRPLKEEEIAA 643
R +HH V + YN S L +L VME+ G A I H R + EE+IA
Sbjct: 74 RDYHHENVVDM----YN------SYLVGDELWVVMEFLEGGALTDIVTHTR-MNEEQIAT 122
Query: 644 ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+C VLR L+YLH+ G IHRD+K+ +ILLT G +KL
Sbjct: 123 VCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKL 159
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 146 bits (371), Expect = 2e-39
Identities = 73/329 (22%), Positives = 121/329 (36%), Gaps = 96/329 (29%)
Query: 167 LREIGHGSFGAVYYARCLVSRE----IVAIKKMSYLGKQCA--EKWADILKEIRFLRQLK 220
+++G G+FG VY E VA+K + K+ A E+ + L+E +++L
Sbjct: 4 GKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTL----KEGASEEEREEFLEEASIMKKLS 59
Query: 221 HPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
HPN + G + ++V EY G + + L++
Sbjct: 60 HPNIVRLLGVCTQGEPLYIVTEYMPGGD------------------LLDFLRK------- 94
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
H L +++ + + +G+ YL S +HRD+ A N L+TE VK++DF
Sbjct: 95 --------HGEKLTLKDLLQMALQIAKGMEYLESKNFVHRDLAARNCLVTENLVVKISDF 146
Query: 340 GSASIKCPANSFVGT-----PY-WMAPEVILAMDEGQYDGKVDVWSLGITCIELAER-KP 392
G + + + P WMAPE + +G++ K DVWS G+ E+ +
Sbjct: 147 GLSRDIYEDDYYRKRGGGKLPIKWMAPESL---KDGKFTSKSDVWSFGVLLWEIFTLGEQ 203
Query: 393 PYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDT 452
PY M+ L + R P N LY +
Sbjct: 204 PYPGMSNEEVLELLEDG--------------------YRLPR--PENCPDELYELML--- 238
Query: 453 PCLQSSDWSDTFAHFVSSCLAKNPADRPS 481
C A +P DRP+
Sbjct: 239 -----------------QCWAYDPEDRPT 250
Score = 118 bits (298), Expect = 9e-30
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVL 64
S++++L HPN + G + ++V EY G D + H L +++ + +
Sbjct: 53 SIMKKLSHPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIA 112
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGT-----PY-WMA 118
+G+ YL S +HRD+ A N L+TE VK++DFG + + + P WMA
Sbjct: 113 KGMEYLESKNFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGKLPIKWMA 172
Query: 119 PEVILAMDEGQYDGKVDVWSLGIT 142
PE + +G++ K DVWS G+
Sbjct: 173 PESL---KDGKFTSKSDVWSFGVL 193
Score = 64.8 bits (159), Expect = 2e-11
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 614 PQLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
+V EY G D + H L +++ + + +G+ YL S +HRD+ A N L+
Sbjct: 76 LYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLESKNFVHRDLAARNCLV 135
Query: 673 TETGTVKL 680
TE VK+
Sbjct: 136 TENLVVKI 143
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 146 bits (370), Expect = 3e-39
Identities = 77/329 (23%), Positives = 126/329 (38%), Gaps = 97/329 (29%)
Query: 167 LREIGHGSFGAVYYAR---CLVSREI-VAIKKMSYLGKQCA--EKWADILKEIRFLRQLK 220
+++G G+FG VY + +++ VA+K + K+ A ++ + L+E R +R+L
Sbjct: 4 GKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTL----KEDASEQQIEEFLREARIMRKLD 59
Query: 221 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHF 280
HPN ++ G + ++VMEY G G+ L L+
Sbjct: 60 HPNVVKLLGVCTEEEPLYIVMEYMEG--------------------GDLLSYLR------ 93
Query: 281 ALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
++ L ++ + + RG+ YL S IHRD+ A N L+ E VK++DFG
Sbjct: 94 ------KNRPKLSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFG 147
Query: 341 ------SASIKCPANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIELAER-KP 392
+ P WMAPE + EG++ K DVWS G+ E+ +
Sbjct: 148 LSRDLYDDDYYRKRGGKL--PIRWMAPESL---KEGKFTSKSDVWSFGVLLWEIFTLGEQ 202
Query: 393 PYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDT 452
PY M+ L ++ R P N LY +
Sbjct: 203 PYPGMSNEEVLEYLKNG--------------------YRLPQPPNCP--PELYDLML--- 237
Query: 453 PCLQSSDWSDTFAHFVSSCLAKNPADRPS 481
C A++P DRP+
Sbjct: 238 -----------------QCWAEDPEDRPT 249
Score = 113 bits (284), Expect = 6e-28
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVL 64
++R+L HPN ++ G + ++VMEY G + ++ L ++ + +
Sbjct: 53 RIMRKLDHPNVVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIA 112
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG------SASIKCPANSFVGTPY-WM 117
RG+ YL S IHRD+ A N L+ E VK++DFG + P WM
Sbjct: 113 RGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKL--PIRWM 170
Query: 118 APEVILAMDEGQYDGKVDVWSLGIT 142
APE + EG++ K DVWS G+
Sbjct: 171 APESL---KEGKFTSKSDVWSFGVL 192
Score = 63.3 bits (155), Expect = 5e-11
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 614 PQLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
+VMEY G + ++ L ++ + + RG+ YL S IHRD+ A N L+
Sbjct: 76 LYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLV 135
Query: 673 TETGTVK 679
E VK
Sbjct: 136 GENLVVK 142
>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 4.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4
(MEKK4) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK4 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK4 activates the c-Jun
N-terminal kinase (JNK) and p38 MAPK signaling pathways
by directly activating their respective MAPKKs,
MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively
known as stress-activated MAPKs, as they are activated
in response to a variety of environmental stresses and
pro-inflammatory cytokines. MEKK4 also plays roles in
the re-polarization of the actin cytoskeleton in
response to osmotic stress, in the proper closure of the
neural tube, in cardiovascular development, and in
immune responses.
Length = 264
Score = 145 bits (367), Expect = 6e-39
Identities = 88/333 (26%), Positives = 132/333 (39%), Gaps = 87/333 (26%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYL-GKQCAEKWADILKEIRFLRQLKHPNTI 225
+IG G+FG VY A L + E++A+K++ K +I E++ L LKHPN +
Sbjct: 5 GNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIK--EIADEMKVLELLKHPNLV 62
Query: 226 EYRGCYLRDHTAWLVMEYCL-GSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
+Y G + ++ MEYC G+ +++E
Sbjct: 63 KYYGVEVHREKVYIFMEYCSGGTLEELLE------------------------------- 91
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI 344
H R L E I +L GL YLHS G +HRD+K NI L G +KL DFG A
Sbjct: 92 ---HGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVK 148
Query: 345 KCPA--------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
S GTP +MAPEVI + D+WSLG +E+A K P+
Sbjct: 149 LKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSE 208
Query: 397 MNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCL- 455
++ +++ + ++H+ P +
Sbjct: 209 LD------------------NEFQI----------------------MFHVGAGHKPPIP 228
Query: 456 QSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
S S F+ CL +P RP++ LL H
Sbjct: 229 DSLQLSPEGKDFLDRCLESDPKKRPTASELLQH 261
Score = 118 bits (299), Expect = 7e-30
Identities = 56/145 (38%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGV 63
+L LKHPN ++Y G + ++ MEYC G+ +++E H R L E I +
Sbjct: 50 MKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLE-HGRILDEHVIRVYTLQL 108
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPA--------NSFVGTPY 115
L GL YLHS G +HRD+K NI L G +KL DFG A S GTP
Sbjct: 109 LEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPA 168
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLG 140
+MAPEVI + D+WSLG
Sbjct: 169 YMAPEVITGGKGKGHGRAADIWSLG 193
Score = 60.4 bits (147), Expect = 6e-10
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 618 MEYCL-GSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 676
MEYC G+ +++E H R L E I +L GL YLHS G +HRD+K NI L G
Sbjct: 78 MEYCSGGTLEELLE-HGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNG 136
Query: 677 TVKL 680
+KL
Sbjct: 137 VIKL 140
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 145 bits (367), Expect = 1e-38
Identities = 96/339 (28%), Positives = 140/339 (41%), Gaps = 83/339 (24%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMS-----YLGKQCAEKWADILKEIRFLRQ 218
+L +G G+ G+V R + I A+K ++ L KQ IL+E+ +
Sbjct: 3 IVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQ-------ILRELEINKS 55
Query: 219 LKHPNTIEYRGCYLRDHTAWL--VMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCF 276
K P ++Y G +L + ++ + MEYC G + D I +R G R+
Sbjct: 56 CKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKR-------GGRI------ 102
Query: 277 TEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 336
E+ + I VL+GL+YLHS IHRD+K NILLT G VKL
Sbjct: 103 ----------------GEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKL 146
Query: 337 ADFGSAS--IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
DFG + + A +F GT ++MAPE I Y DVWSLG+T +E
Sbjct: 147 CDFGVSGELVNSLAGTFTGTSFYMAPERIQG---KPYSITSDVWSLGLTLLE-------- 195
Query: 395 FNMNAMSALYHIAQNDTPCLQSSDWSV--IKTISSTAERKPPYFNMNAMSALYHIAQNDT 452
+AQN P + + I+ +S P D
Sbjct: 196 -----------VAQNRFPFPPEGEPPLGPIELLSYIVNMPNPEL-------------KDE 231
Query: 453 PCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
P WS+ F F+ CL K+P RP+ +L H +
Sbjct: 232 PGNGIK-WSEEFKDFIKQCLEKDPTRRPTPWDMLEHPWI 269
Score = 119 bits (301), Expect = 7e-30
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 17/150 (11%)
Query: 7 LLRQL------KHPNTIEYRGCYLRDHTAWL--VMEYCLGSASDII--EVHKRPLK--EE 54
+LR+L K P ++Y G +L + ++ + MEYC G + D I +V KR + E+
Sbjct: 46 ILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEK 105
Query: 55 EIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS--IKCPANSFVG 112
+ I VL+GL+YLHS IHRD+K NILLT G VKL DFG + + A +F G
Sbjct: 106 VLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTG 165
Query: 113 TPYWMAPEVILAMDEGQYDGKVDVWSLGIT 142
T ++MAPE I Y DVWSLG+T
Sbjct: 166 TSFYMAPERIQG---KPYSITSDVWSLGLT 192
Score = 67.8 bits (166), Expect = 3e-12
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 616 LVMEYCLGSASDII--EVHKRPLK--EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
+ MEYC G + D I +V KR + E+ + I VL+GL+YLHS IHRD+K NIL
Sbjct: 78 IAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNIL 137
Query: 672 LTETGTVKL 680
LT G VKL
Sbjct: 138 LTRKGQVKL 146
>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein
Kinase Like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like
(CDKL) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDKL subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDKL1-5 and similar proteins. Some CDKLs,
like CDKL1 and CDKL3, may be implicated in
transformation and others, like CDKL3 and CDKL5, are
associated with mental retardation when impaired. CDKL2
plays a role in learning and memory.
Length = 288
Score = 145 bits (367), Expect = 1e-38
Identities = 91/335 (27%), Positives = 143/335 (42%), Gaps = 60/335 (17%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKM--SYLGKQCAEKWADILKEIRFLRQLKH 221
+E L +G G++G V R + EIVAIKK S + + L+E++ LRQL+H
Sbjct: 3 YEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKT---ALREVKVLRQLRH 59
Query: 222 PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
N + + + R +LV EY ER L+ L
Sbjct: 60 ENIVNLKEAFRRKGRLYLVFEYV-------------ER--------TLLELL-------- 90
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
E L + + + +L+ + Y HS IHRD+K NIL++E+G +KL DFG
Sbjct: 91 ----EASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGF 146
Query: 342 A-SIKCPAN----SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
A +++ +V T ++ APE+++ + Y VDVW++G EL + +P +
Sbjct: 147 ARALRARPASPLTDYVATRWYRAPELLVG--DTNYGKPVDVWAIGCIMAELLDGEPLFPG 204
Query: 397 MNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIA--QNDTPC 454
+ + LY I + CL S + SS P F A + P
Sbjct: 205 DSDIDQLYLIQK----CLGPLPPSHQELFSSN-----PRFAGVAFPEPSQPESLERRYPG 255
Query: 455 LQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHD 489
SS D F+ +CL +P +R + LL H
Sbjct: 256 KVSSPALD----FLKACLRMDPKERLTCDELLQHP 286
Score = 107 bits (270), Expect = 9e-26
Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 15/158 (9%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
+LRQL+H N + + + R +LV EY + +++E L + + + +L+
Sbjct: 52 KVLRQLRHENIVNLKEAFRRKGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQ 111
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPAN----SFVGTPYWMAPE 120
+ Y HS IHRD+K NIL++E+G +KL DFG A +++ +V T ++ APE
Sbjct: 112 AIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPE 171
Query: 121 VILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKE 158
+++ + Y VDVW++G +AEL D E
Sbjct: 172 LLVG--DTNYGKPVDVWAIGCI--------MAELLDGE 199
Score = 57.7 bits (140), Expect = 7e-09
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LV EY + +++E L + + + +L+ + Y HS IHRD+K NIL++E+
Sbjct: 77 LVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSES 136
Query: 676 GTVKL 680
G +KL
Sbjct: 137 GVLKL 141
>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIA myosin.
Serine/threonine kinases (STKs), class IIIA myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
In photoreceptor cells, they may also function as cargo
carriers during light-dependent translocation of
proteins such as transducin and arrestin. Class IIIA
myosin is highly expressed in retina and in inner ear
hair cells. It is localized to the distal ends of
actin-bundled structures. Mutations in human myosin IIIA
are responsible for progressive nonsyndromic hearing
loss. Human myosin IIIA possesses ATPase and kinase
activities, and the ability to move actin filaments in a
motility assay. It may function as a cellular
transporter capable of moving along actin bundles in
sensory cells.
Length = 286
Score = 145 bits (366), Expect = 1e-38
Identities = 108/352 (30%), Positives = 149/352 (42%), Gaps = 88/352 (25%)
Query: 154 LFDK-EDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKE 212
+FD DP +E + IG G++G V+ + A+K + + E I E
Sbjct: 9 IFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEE----IEAE 64
Query: 213 IRFLRQLK-HPNTIEYRGCYLRDHTA-----WLVMEYCLG-SASDIIEVHWIEREFHVEG 265
L+ L HPN +++ G Y + WLV+E C G S +D+ V+G
Sbjct: 65 YNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDL-----------VKG 113
Query: 266 MGNRLQQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGN 325
R ++++ E IA I L GL +LH IHRDVK N
Sbjct: 114 FLKRGERME-------------------EPIIAYILHEALMGLQHLHVNKTIHRDVKGNN 154
Query: 326 ILLTETGTVKLADFGSA----SIKCPANSFVGTPYWMAPEVILAMDE--GQYDGKVDVWS 379
ILLT G VKL DFG + S + N+ VGTP+WMAPEVI + YD + DVWS
Sbjct: 155 ILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWS 214
Query: 380 LGITCIELAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMN 439
LGIT IEL + PP +++ M AL+ I +N P L
Sbjct: 215 LGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLH------------------------ 250
Query: 440 AMSALYHIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
Q WS+ F F+ CL K+ RP+ LL H +
Sbjct: 251 ----------------QPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI 286
Score = 112 bits (281), Expect = 2e-27
Identities = 71/159 (44%), Positives = 90/159 (56%), Gaps = 17/159 (10%)
Query: 13 HPNTIEYRGCYLRDHTA-----WLVMEYCLG-SASDIIE-VHKRPLKEEE--IAAICSGV 63
HPN +++ G Y + WLV+E C G S +D+++ KR + EE IA I
Sbjct: 74 HPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEA 133
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA----SIKCPANSFVGTPYWMAP 119
L GL +LH IHRDVK NILLT G VKL DFG + S + N+ VGTP+WMAP
Sbjct: 134 LMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAP 193
Query: 120 EVILAMDE--GQYDGKVDVWSLGITPGSL--KDPEIAEL 154
EVI + YD + DVWSLGIT L DP +A+L
Sbjct: 194 EVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADL 232
Score = 49.6 bits (118), Expect = 2e-06
Identities = 34/69 (49%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 616 LVMEYCLG-SASDIIE-VHKRPLKEEE--IAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
LV+E C G S +D+++ KR + EE IA I L GL +LH IHRDVK NIL
Sbjct: 97 LVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNIL 156
Query: 672 LTETGTVKL 680
LT G VKL
Sbjct: 157 LTTEGGVKL 165
>gnl|CDD|214801 smart00750, KIND, kinase non-catalytic C-lobe domain. It is an
interaction domain identified as being similar to the
C-terminal protein kinase catalytic fold (C lobe). Its
presence at the N terminus of signalling proteins and
the absence of the active-site residues in the catalytic
and activation loops suggest that it folds independently
and is likely to be non-catalytic. The occurrence of
KIND only in metazoa implies that it has evolved from
the catalytic protein kinase domain into an interaction
domain possibly by keeping the substrate-binding
features.
Length = 176
Score = 140 bits (355), Expect = 2e-38
Identities = 62/213 (29%), Positives = 83/213 (38%), Gaps = 45/213 (21%)
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK 345
EV RPL EEEI A+C L L LH K+GNILLT G +KL GS + K
Sbjct: 8 EVRGRPLNEEEIWAVCLQCLGALRELHRQA------KSGNILLTWDGLLKL--DGSVAFK 59
Query: 346 CPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMSALYH 405
P S PY+MAPEVI + K D++SLGIT E + + PY +SA+
Sbjct: 60 TPEQSRP-DPYFMAPEVIQGQSYTE---KADIYSLGITLYEALDYELPYNEERELSAILE 115
Query: 406 IAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSDTFA 465
I N P D L+ + +F
Sbjct: 116 ILLNGMPADD---------------------------------PRDRSNLEGVSAARSFE 142
Query: 466 HFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPS 498
F+ C ++ P R ++ L H +
Sbjct: 143 DFMRLCASRLPQRREAANHYLAHCRALFAETLE 175
Score = 106 bits (266), Expect = 2e-26
Identities = 48/105 (45%), Positives = 58/105 (55%), Gaps = 12/105 (11%)
Query: 38 GSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 97
S +DI+EV RPL EEEI A+C L L LH K+GNILLT G +KL
Sbjct: 1 VSLADILEVRGRPLNEEEIWAVCLQCLGALRELHRQA------KSGNILLTWDGLLKL-- 52
Query: 98 FGSASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 142
GS + K P S PY+MAPEVI + K D++SLGIT
Sbjct: 53 DGSVAFKTPEQSRP-DPYFMAPEVIQGQSYTE---KADIYSLGIT 93
Score = 61.6 bits (150), Expect = 6e-11
Identities = 36/97 (37%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 623 GSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLD- 681
S +DI+EV RPL EEEI A+C L L LH K+GNILLT G +KLD
Sbjct: 1 VSLADILEVRGRPLNEEEIWAVCLQCLGALRELHRQA------KSGNILLTWDGLLKLDG 54
Query: 682 ----TPDEQAGNDS-------SKSNSITSEHSVQSVG 707
EQ+ D + S T + + S+G
Sbjct: 55 SVAFKTPEQSRPDPYFMAPEVIQGQSYTEKADIYSLG 91
>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ
cell-Associated Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Male germ
cell-Associated Kinase (MAK)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of human MAK and
MAK-related kinase (MRK), Saccharomyces cerevisiae
Ime2p, Schizosaccharomyces pombe Mei4-dependent protein
3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5,
Arabidopsis thaliana MHK, and similar proteins. These
proteins play important roles during meiosis. MAK is
highly expressed in testicular cells specifically in the
meiotic phase, but is not essential for spermatogenesis
and fertility. It functions as a coactivator of the
androgen receptor in prostate cells. MRK, also called
Intestinal Cell Kinase (ICK), is expressed ubiquitously,
with highest expression in the ovary and uterus. A
missense mutation in MRK causes
endocrine-cerebro-osteodysplasia (ECO), suggesting that
this protein plays an important role in the development
of many organs. MAK and MRK may be involved in
regulating cell cycle and cell fate. Ime2p is a
meiosis-specific kinase that is important during meiotic
initiation and during the later stages of meiosis. Mde3
functions downstream of the transcription factor Mei-4
which is essential for meiotic prophase I.
Length = 283
Score = 143 bits (363), Expect = 3e-38
Identities = 93/335 (27%), Positives = 152/335 (45%), Gaps = 63/335 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADI--LKEIRFLRQLK- 220
++ ++++G G+FG+VY AR + E+VAIKKM K+ W + L+E++ LR+L
Sbjct: 1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKM----KKKFYSWEECMNLREVKSLRKLNE 56
Query: 221 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHF 280
HPN ++ + + + + V EY GN Q +K
Sbjct: 57 HPNIVKLKEVFRENDELYFVFEYM---------------------EGNLYQLMKDRK--- 92
Query: 281 ALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
+P E I +I +L+GL ++H G HRD+K N+L++ VK+ADFG
Sbjct: 93 --------GKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFG 144
Query: 341 SA-SIKC--PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI--ELAERKPPYF 395
A I+ P +V T ++ APE++L Y VD+W+LG CI EL +P +
Sbjct: 145 LAREIRSRPPYTDYVSTRWYRAPEILLR--STSYSSPVDIWALG--CIMAELYTLRPLFP 200
Query: 396 NMNAMSALYHIAQ-NDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPC 454
+ + LY I TP DW ++S + P F A ++L+ + N +P
Sbjct: 201 GSSEIDQLYKICSVLGTP--TKQDWPEGYKLASKLGFRFPQF---APTSLHQLIPNASP- 254
Query: 455 LQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHD 489
+ L +P RP++ + L H
Sbjct: 255 --------EAIDLIKDMLRWDPKKRPTASQALQHP 281
Score = 98.0 bits (245), Expect = 2e-22
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 8 LRQLK-HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHK-RPLKEEEIAAICSGVLR 65
LR+L HPN ++ + + + + V EY G+ +++ K +P E I +I +L+
Sbjct: 51 LRKLNEHPNIVKLKEVFRENDELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQ 110
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKC--PANSFVGTPYWMAPEVI 122
GL ++H G HRD+K N+L++ VK+ADFG A I+ P +V T ++ APE++
Sbjct: 111 GLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEIL 170
Query: 123 LAMDEGQYDGKVDVWSLG 140
L Y VD+W+LG
Sbjct: 171 LR--STSYSSPVDIWALG 186
Score = 61.4 bits (150), Expect = 4e-10
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 616 LVMEYCLGSASDIIEVHK-RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
V EY G+ +++ K +P E I +I +L+GL ++H G HRD+K N+L++
Sbjct: 75 FVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSG 134
Query: 675 TGTVKL 680
VK+
Sbjct: 135 PEVVKI 140
>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), CMGC family, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CMGC family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The CMGC family consists of Cyclin-Dependent
protein Kinases (CDKs), Mitogen-activated protein
kinases (MAPKs) such as Extracellular signal-regulated
kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38,
and similar proteins. CDKs belong to a large subfamily
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. MAPKs
serve as important mediators of cellular responses to
extracellular signals. They control critical cellular
functions including differentiation, proliferation,
migration, and apoptosis. They are also implicated in
the pathogenesis of many diseases including multiple
types of cancer, stroke, diabetes, and chronic
inflammation.
Length = 283
Score = 142 bits (361), Expect = 6e-38
Identities = 87/334 (26%), Positives = 141/334 (42%), Gaps = 63/334 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
++ L +IG G++G VY AR ++ EIVAIKK+ + L+EI+ L++L HPN
Sbjct: 1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIP-KTALREIKLLKELNHPN 59
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
I+ + +LV E+ +D+ ++
Sbjct: 60 IIKLLDVFRHKGDLYLVFEFMD---TDLYKL----------------------------- 87
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
+ +R L E I + +L+GL + HS G +HRD+K N+L+ G +KLADFG A
Sbjct: 88 -IKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLAR 146
Query: 344 IKCPANSF----VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI--ELAERKPPYFNM 397
V T ++ APE++L Y VD+WS+G CI EL R+P +
Sbjct: 147 SFGSPVRPYTHYVVTRWYRAPELLLGD--KGYSTPVDIWSVG--CIFAELLSRRPLFPGK 202
Query: 398 NAMSALYHIAQN-DTPCLQSSDWSVIKTIS-STAERKPPYFNMNAMSALYHIAQN-DTPC 454
+ + L+ I + TP W +++ + P M L + N
Sbjct: 203 SEIDQLFKIFRTLGTPD--PEVWPKFTSLARNYKFSFPKKAGMP----LPKLFPNASPQA 256
Query: 455 LQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
L +S L +P R ++ + L H
Sbjct: 257 LD----------LLSQMLHYDPHKRITAEQALAH 280
Score = 111 bits (279), Expect = 5e-27
Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
LL++L HPN I+ + +LV E+ +I+ +R L E I + +L+
Sbjct: 50 KLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQ 109
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSF----VGTPYWMAPEV 121
GL + HS G +HRD+K N+L+ G +KLADFG A V T ++ APE+
Sbjct: 110 GLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPEL 169
Query: 122 ILAMDEGQYDGKVDVWSLG 140
+L Y VD+WS+G
Sbjct: 170 LLGD--KGYSTPVDIWSVG 186
Score = 62.3 bits (152), Expect = 2e-10
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LV E+ +I+ +R L E I + +L+GL + HS G +HRD+K N+L+
Sbjct: 75 LVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTE 134
Query: 676 GTVKL 680
G +KL
Sbjct: 135 GVLKL 139
>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2,
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii Never In Mitosis gene A
(NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii CNK2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes CNK1, and -2. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii CNK2 has both
cilliary and cell cycle functions. It influences
flagellar length through promoting flagellar
disassembly, and it regulates cell size, through
influencing the size threshold at which cells commit to
mitosis.
Length = 256
Score = 141 bits (356), Expect = 1e-37
Identities = 91/332 (27%), Positives = 139/332 (41%), Gaps = 81/332 (24%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
F+ L+++G GS+G+VY + L + A+K++ LG ++ D + EIR L + HPN
Sbjct: 2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVD-LGSMSQKEREDAVNEIRILASVNHPN 60
Query: 224 TIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
I Y+ +L + +VMEY G S I R ++
Sbjct: 61 IISYKEAFLDGNKLCIVMEYAPFGDLSKAIS--------------KRKKK---------- 96
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA 342
++ + E+EI I +LRGL LH +HRD+K+ NILL VK+ D G +
Sbjct: 97 ------RKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGIS 150
Query: 343 SI--KCPANSFVGTPYWMAPEVILAMDEGQ-YDGKVDVWSLGITCIELAERKPPYFNMNA 399
+ K A + +GTP++MAPEV +G+ Y K D+WSLG E+A PP F +
Sbjct: 151 KVLKKNMAKTQIGTPHYMAPEVW----KGRPYSYKSDIWSLGCLLYEMATFAPP-FEARS 205
Query: 400 MSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSD 459
M L + K PP +
Sbjct: 206 MQDLRY-----------------KVQRGKYPPIPPIY----------------------- 225
Query: 460 WSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
S +F+ S L P RP+ ++L V
Sbjct: 226 -SQDLQNFIRSMLQVKPKLRPNCDKILASPAV 256
Score = 100 bits (251), Expect = 1e-23
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDII---EVHKRPLKEEEIAAICSG 62
+L + HPN I Y+ +L + +VMEY G S I + ++ + E+EI I
Sbjct: 52 ILASVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQ 111
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI--KCPANSFVGTPYWMAPE 120
+LRGL LH +HRD+K+ NILL VK+ D G + + K A + +GTP++MAPE
Sbjct: 112 LLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPE 171
Query: 121 VILAMDEGQ-YDGKVDVWSLG 140
V +G+ Y K D+WSLG
Sbjct: 172 VW----KGRPYSYKSDIWSLG 188
Score = 56.7 bits (137), Expect = 9e-09
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 616 LVMEYC-LGSASDII---EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
+VMEY G S I + ++ + E+EI I +LRGL LH +HRD+K+ NIL
Sbjct: 76 IVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANIL 135
Query: 672 LTETGTVKL 680
L VK+
Sbjct: 136 LVANDLVKI 144
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 138 bits (351), Expect = 2e-36
Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 56/241 (23%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWAD-----ILKEIRFLRQ 218
+E L ++G G++G VY AR + EIVA+KK+ + E+ + L+EI L++
Sbjct: 1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKI----RLDNEE--EGIPSTALREISLLKE 54
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
LKHPN ++ + +LV EYC D
Sbjct: 55 LKHPNIVKLLDVIHTERKLYLVFEYC---DMD---------------------------- 83
Query: 279 HFALFNF-EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
L + + PL I +I +LRGL Y HS +HRD+K NIL+ G +KLA
Sbjct: 84 ---LKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLA 140
Query: 338 DFGSA-SIKCPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI--ELAERK 391
DFG A + P ++ V T ++ APE++L Y VD+WS+G CI E+ K
Sbjct: 141 DFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSK--HYSTAVDIWSVG--CIFAEMITGK 196
Query: 392 P 392
P
Sbjct: 197 P 197
Score = 119 bits (301), Expect = 8e-30
Identities = 65/177 (36%), Positives = 90/177 (50%), Gaps = 26/177 (14%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
SLL++LKHPN ++ + +LV EYC ++ PL I +I +LR
Sbjct: 50 SLLKELKHPNIVKLLDVIHTERKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLR 109
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSF---VGTPYWMAPEV 121
GL Y HS +HRD+K NIL+ G +KLADFG A + P ++ V T ++ APE+
Sbjct: 110 GLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEI 169
Query: 122 ILAMDEGQYDGKVDVWSLG------IT-----PGSLKDPEIAELFDKEDPEKIFEDL 167
+L Y VD+WS+G IT PG D EI +LF KIF+ L
Sbjct: 170 LLGSK--HYSTAVDIWSVGCIFAEMITGKPLFPG---DSEIDQLF------KIFQIL 215
Score = 64.4 bits (158), Expect = 3e-11
Identities = 26/65 (40%), Positives = 34/65 (52%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LV EYC ++ PL I +I +LRGL Y HS +HRD+K NIL+
Sbjct: 75 LVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRD 134
Query: 676 GTVKL 680
G +KL
Sbjct: 135 GVLKL 139
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene
A-related kinase 6 and 7. Serine/Threonine Kinases
(STKs), Never In Mitosis gene A (NIMA)-related kinase 6
(Nek6) and Nek7 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The Nek6/7 subfamily is part of a family of 11 different
Neks (Nek1-11) that are involved in cell cycle control.
The Nek family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek6 and Nek7 are the shortest Neks,
consisting only of the catalytic domain and a very short
N-terminal extension. They show distinct expression
patterns and both appear to be downstream substrates of
Nek9. They are required for mitotic spindle formation
and cytokinesis. They may also be regulators of the p70
ribosomal S6 kinase.
Length = 267
Score = 137 bits (348), Expect = 2e-36
Identities = 98/323 (30%), Positives = 139/323 (43%), Gaps = 79/323 (24%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
F+ ++IG G F VY A CL+ +VA+KK+ A+ D LKEI L+QL HPN
Sbjct: 4 FKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPN 63
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
I+Y ++ ++ +V+E L A D L +HF
Sbjct: 64 VIKYLASFIENNELNIVLE--LADAGD----------------------LSRMIKHFK-- 97
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG--- 340
KR + E I + L ++HS +HRD+K N+ +T TG VKL D G
Sbjct: 98 ---KQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGR 154
Query: 341 -SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNA 399
+S A+S VGTPY+M+PE I E Y+ K D+WSLG C+
Sbjct: 155 FFSSKTTAAHSLVGTPYYMSPERI---HENGYNFKSDIWSLG--CL-------------- 195
Query: 400 MSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYF--NMNAMSALYHIAQNDTPCLQS 457
LY +A LQS P++ MN S I + D P L +
Sbjct: 196 ---LYEMA-----ALQS-----------------PFYGDKMNLYSLCKKIEKCDYPPLPA 230
Query: 458 SDWSDTFAHFVSSCLAKNPADRP 480
+S+ VS C+ +P RP
Sbjct: 231 DHYSEELRDLVSRCINPDPEKRP 253
Score = 96.3 bits (240), Expect = 4e-22
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 15/144 (10%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEV------HKRPLKEEEIAAIC 60
LL+QL HPN I+Y ++ ++ +V+E L A D+ + KR + E I
Sbjct: 55 LLKQLDHPNVIKYLASFIENNELNIVLE--LADAGDLSRMIKHFKKQKRLIPERTIWKYF 112
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASIKCPANSFVGTPYW 116
+ L ++HS +HRD+K N+ +T TG VKL D G +S A+S VGTPY+
Sbjct: 113 VQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYY 172
Query: 117 MAPEVILAMDEGQYDGKVDVWSLG 140
M+PE I E Y+ K D+WSLG
Sbjct: 173 MSPERI---HENGYNFKSDIWSLG 193
Score = 40.9 bits (96), Expect = 0.002
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 633 KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
KR + E I + L ++HS +HRD+K N+ +T TG VKL
Sbjct: 100 KRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKL 147
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK2 and MEKK3 activate MEK5 (also called MKK5), which
activates extracellular signal-regulated kinase 5
(ERK5). The ERK5 cascade plays roles in promoting cell
proliferation, differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development.
MEKK2 and MEKK3 can also activate the MAPKs, c-Jun
N-terminal kinase (JNK) and p38, through their
respective MAPKKs.
Length = 263
Score = 137 bits (346), Expect = 3e-36
Identities = 93/331 (28%), Positives = 133/331 (40%), Gaps = 86/331 (25%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSY--LGKQCAEKWADILKEIRFLRQLKHPNTIEY 227
+G G+FG VY + + +A+K++ + + ++ + EI+ L+ L+H ++Y
Sbjct: 10 LGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQY 69
Query: 228 RGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEV 287
GC D T + MEY G G+ QLK +
Sbjct: 70 YGCLRDDETLSIFMEYMPG--------------------GSVKDQLKAYG---------- 99
Query: 288 HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA----S 343
L E +L G+ YLHS +HRD+K NIL G VKL DFG++ +
Sbjct: 100 ---ALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQT 156
Query: 344 IKCP---ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAM 400
I S GTPYWM+PEVI EG Y K DVWS+G T +E+ KPP+ AM
Sbjct: 157 ICSSGTGMKSVTGTPYWMSPEVISG--EG-YGRKADVWSVGCTVVEMLTEKPPWAEFEAM 213
Query: 401 SALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSDW 460
+A++ IA Q P L S
Sbjct: 214 AAIFKIAT----------------------------------------QPTNPQL-PSHV 232
Query: 461 SDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
S +F+ +N RPS+ LL H V
Sbjct: 233 SPDARNFLRRTFVENAKKRPSAEELLRHFFV 263
Score = 109 bits (273), Expect = 2e-26
Identities = 59/144 (40%), Positives = 76/144 (52%), Gaps = 12/144 (8%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLR 65
LL+ L+H ++Y GC D T + MEY G S D ++ + L E +L
Sbjct: 57 LLKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYG-ALTETVTRKYTRQILE 115
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA----SIKCP---ANSFVGTPYWMA 118
G+ YLHS +HRD+K NIL G VKL DFG++ +I S GTPYWM+
Sbjct: 116 GVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMS 175
Query: 119 PEVILAMDEGQYDGKVDVWSLGIT 142
PEVI EG Y K DVWS+G T
Sbjct: 176 PEVISG--EG-YGRKADVWSVGCT 196
Score = 43.3 bits (102), Expect = 2e-04
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 618 MEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 676
MEY G S D ++ + L E +L G+ YLHS +HRD+K NIL G
Sbjct: 83 MEYMPGGSVKDQLKAYG-ALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAG 141
Query: 677 TVKL 680
VKL
Sbjct: 142 NVKL 145
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases.
Protein Tyrosine Kinase (PTK) family, catalytic domain.
This PTKc family is part of a larger superfamily that
includes the catalytic domains of protein
serine/threonine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. They can be classified
into receptor and non-receptor tyr kinases. PTKs play
important roles in many cellular processes including,
lymphocyte activation, epithelium growth and
maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular
tyr kinase domain. RTKs are usually activated through
ligand binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are
distributed in different intracellular compartments and
are usually multi-domain proteins containing a catalytic
tyr kinase domain as well as various regulatory domains
such as SH3 and SH2. PTKs are usually autoinhibited and
require a mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop
is essential for optimal activity. Aberrant expression
of PTKs is associated with many development
abnormalities and cancers.
Length = 262
Score = 134 bits (340), Expect = 3e-35
Identities = 65/256 (25%), Positives = 110/256 (42%), Gaps = 53/256 (20%)
Query: 168 REIGHGSFGAVY--YARCLVSREI-VAIKKMSYLGKQCA--EKWADILKEIRFLRQLKHP 222
+++G G+FG VY + + VA+K + K+ A E+ D LKE R +++L HP
Sbjct: 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTL----KEDASEEERKDFLKEARVMKKLGHP 56
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
N + G + +LV+EY G G+ L L+ + +
Sbjct: 57 NVVRLLGVCTEEEPLYLVLEYMEG--------------------GDLLDYLR---KSRPV 93
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA 342
F L +++ + + +G+ YL S +HRD+ A N L+ E VK++DFG +
Sbjct: 94 FPSPEKST-LSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLS 152
Query: 343 SIKCPANSFVGTPY-----------WMAPEVILAMDEGQYDGKVDVWSLGITCIELAER- 390
+ + Y WMAPE + +G + K DVWS G+ E+
Sbjct: 153 R-----DVYDDDYYRKKTGGKLPIRWMAPESL---KDGIFTSKSDVWSFGVLLWEIFTLG 204
Query: 391 KPPYFNMNAMSALYHI 406
PY ++ L ++
Sbjct: 205 ATPYPGLSNEEVLEYL 220
Score = 104 bits (261), Expect = 8e-25
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 28/157 (17%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG---------SASDIIEVHKRPLKEEEI 56
++++L HPN + G + +LV+EY G S K L +++
Sbjct: 48 RVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDL 107
Query: 57 AAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPY- 115
+ + +G+ YL S +HRD+ A N L+ E VK++DFG + + + Y
Sbjct: 108 LSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSR-----DVYDDDYYR 162
Query: 116 ----------WMAPEVILAMDEGQYDGKVDVWSLGIT 142
WMAPE + +G + K DVWS G+
Sbjct: 163 KKTGGKLPIRWMAPESL---KDGIFTSKSDVWSFGVL 196
Score = 53.7 bits (130), Expect = 9e-08
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 616 LVMEYCLG---------SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVK 666
LV+EY G S K L +++ + + +G+ YL S +HRD+
Sbjct: 73 LVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLA 132
Query: 667 AGNILLTETGTVKL 680
A N L+ E VK+
Sbjct: 133 ARNCLVGEDLVVKI 146
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase
4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. YSK4 is a
putative MAPKKK, whose mammalian gene has been isolated.
MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals.
Length = 265
Score = 134 bits (338), Expect = 4e-35
Identities = 95/337 (28%), Positives = 145/337 (43%), Gaps = 94/337 (27%)
Query: 170 IGHGSFGAVYYARCLVSR-EIVAIKKMSY--LGKQCAEK-WADILKEIRFLRQLKHPNTI 225
+G G++G VY L ++ +++A+K++ AEK + + +E+ L+ LKH N +
Sbjct: 8 LGKGAYGTVYCG--LTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIV 65
Query: 226 EYRGCYLRDHTAWLVMEYCLG-SASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
+Y G L D+T + ME+ G S S I+ NR
Sbjct: 66 QYLGTCLDDNTISIFMEFVPGGSISSIL---------------NRFG------------- 97
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI 344
PL E +L G+ YLH+ +HRD+K N++L G +KL DFG A
Sbjct: 98 ------PLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARR 151
Query: 345 KCPAN----------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
S GTPYWMAPEVI +E Y K D+WS+G T E+A KPP
Sbjct: 152 LAWVGLHGTHSNMLKSMHGTPYWMAPEVI---NESGYGRKSDIWSIGCTVFEMATGKPPL 208
Query: 395 FNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPC 454
+M+ ++A+++I + R P F+ A
Sbjct: 209 ASMDRLAAMFYIGAHRGL----------------MPRLPDSFSAAA-------------- 238
Query: 455 LQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
FV+SCL ++ +RPS+ +LL HD +
Sbjct: 239 ----------IDFVTSCLTRDQHERPSALQLLRHDFL 265
Score = 104 bits (260), Expect = 9e-25
Identities = 57/148 (38%), Positives = 76/148 (51%), Gaps = 17/148 (11%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKR--PLKEEEIAAICSGVL 64
LL+ LKH N ++Y G L D+T + ME+ G + I + R PL E +L
Sbjct: 55 LLKSLKHVNIVQYLGTCLDDNTISIFMEFVPGGS--ISSILNRFGPLPEPVFCKYTKQIL 112
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN----------SFVGTP 114
G+ YLH+ +HRD+K N++L G +KL DFG A S GTP
Sbjct: 113 DGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTP 172
Query: 115 YWMAPEVILAMDEGQYDGKVDVWSLGIT 142
YWMAPEVI +E Y K D+WS+G T
Sbjct: 173 YWMAPEVI---NESGYGRKSDIWSIGCT 197
Score = 43.7 bits (103), Expect = 2e-04
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 616 LVMEYCLGSASDIIEVHKR--PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
+ ME+ G + I + R PL E +L G+ YLH+ +HRD+K N++L
Sbjct: 79 IFMEFVPGGS--ISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLM 136
Query: 674 ETGTVKL 680
G +KL
Sbjct: 137 PNGIIKL 143
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 132 bits (334), Expect = 1e-34
Identities = 93/324 (28%), Positives = 139/324 (42%), Gaps = 75/324 (23%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
F+ ++IG G F VY A CL+ R+ VA+KK+ A+ D +KEI L+QL HPN
Sbjct: 4 FQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPN 63
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
I+Y ++ D+ +V+E L A D+ ++ +
Sbjct: 64 VIKYLDSFIEDNELNIVLE--LADAGDLSQM---------------------------IK 94
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG--- 340
F+ KR + E + + + ++HS +HRD+K N+ +T TG VKL D G
Sbjct: 95 YFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGR 154
Query: 341 -SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNA 399
+S A+S VGTPY+M+PE I E Y+ K D+WSLG E+A + P++
Sbjct: 155 FFSSKTTAAHSLVGTPYYMSPERI---HENGYNFKSDIWSLGCLLYEMAALQSPFY---- 207
Query: 400 MSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSD 459
D MN S I Q D P L +
Sbjct: 208 -----------------GD------------------KMNLFSLCQKIEQCDYPPLPTEH 232
Query: 460 WSDTFAHFVSSCLAKNPADRPSSG 483
+S+ VS C+ +P RP G
Sbjct: 233 YSEKLRELVSMCIYPDPDQRPDIG 256
Score = 92.4 bits (229), Expect = 9e-21
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEV------HKRPLKEEEIAAIC 60
LL+QL HPN I+Y ++ D+ +V+E L A D+ ++ KR + E +
Sbjct: 55 LLKQLNHPNVIKYLDSFIEDNELNIVLE--LADAGDLSQMIKYFKKQKRLIPERTVWKYF 112
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASIKCPANSFVGTPYW 116
+ + ++HS +HRD+K N+ +T TG VKL D G +S A+S VGTPY+
Sbjct: 113 VQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYY 172
Query: 117 MAPEVILAMDEGQYDGKVDVWSLG 140
M+PE I E Y+ K D+WSLG
Sbjct: 173 MSPERI---HENGYNFKSDIWSLG 193
Score = 35.8 bits (82), Expect = 0.059
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 616 LVMEYCLGSASDIIEV------HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGN 669
+V+E L A D+ ++ KR + E + + + ++HS +HRD+K N
Sbjct: 79 IVLE--LADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPAN 136
Query: 670 ILLTETGTVKL 680
+ +T TG VKL
Sbjct: 137 VFITATGVVKL 147
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 131 bits (331), Expect = 4e-34
Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 44/278 (15%)
Query: 168 REIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEY 227
++IG G F VY A CL+ VA+KK+ A+ AD +KEI L+QL HPN I+Y
Sbjct: 8 KKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKY 67
Query: 228 RGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEV 287
++ D+ +V+E L A D+ + + +F+
Sbjct: 68 YASFIEDNELNIVLE--LADAGDLSRM---------------------------IKHFKK 98
Query: 288 HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SAS 343
KR + E+ + + L ++HS +HRD+K N+ +T TG VKL D G +S
Sbjct: 99 QKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS 158
Query: 344 IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYF--NMNAMS 401
A+S VGTPY+M+PE I E Y+ K D+WSLG E+A + P++ MN S
Sbjct: 159 KTTAAHSLVGTPYYMSPERI---HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYS 215
Query: 402 ALYHIAQNDTPCLQSSDWS------VIKTISSTAERKP 433
I Q D P L S +S V I+ E++P
Sbjct: 216 LCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRP 253
Score = 92.0 bits (228), Expect = 1e-20
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEV------HKRPLKEEEIAAIC 60
LL+QL HPN I+Y ++ D+ +V+E L A D+ + KR + E+ +
Sbjct: 55 LLKQLNHPNVIKYYASFIEDNELNIVLE--LADAGDLSRMIKHFKKQKRLIPEKTVWKYF 112
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASIKCPANSFVGTPYW 116
+ L ++HS +HRD+K N+ +T TG VKL D G +S A+S VGTPY+
Sbjct: 113 VQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYY 172
Query: 117 MAPEVILAMDEGQYDGKVDVWSLG 140
M+PE I E Y+ K D+WSLG
Sbjct: 173 MSPERI---HENGYNFKSDIWSLG 193
Score = 35.8 bits (82), Expect = 0.060
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 632 HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
KR + E+ + + L ++HS +HRD+K N+ +T TG VKL
Sbjct: 99 QKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKL 147
>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal
Bck1-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Bck1-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Saccharomyces cerevisiae Bck1 and Schizosaccharomyces
pombe Mkh1, and related proteins. MAPKKKs phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Budding
yeast Bck1 is part of the cell integrity MAPK pathway,
which is activated by stresses and aggressions to the
cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and
the MAPK Slt2 make up the cascade that is important in
the maintenance of cell wall homeostasis. Fission yeast
Mkh1 is involved in MAPK cascades regulating cell
morphology, cell wall integrity, salt resistance, and
filamentous growth in response to stress.
Length = 272
Score = 129 bits (325), Expect = 3e-33
Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 86/333 (25%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKM---SYLGKQCAEKWADILK----EIRFLRQLKHP 222
IG G++G VY A + + E++A+K++ + + + + D++K EI L+ L H
Sbjct: 9 IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
N ++Y G + + +EY G S + +
Sbjct: 69 NIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTY-------------------------- 102
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG- 340
+E+ + VL GL YLHS G +HRD+KA N+L+ G K++DFG
Sbjct: 103 --------GRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGI 154
Query: 341 ---SASI--KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYF 395
S I S G+ +WMAPEVI + +G Y KVD+WSLG +E+ + P+
Sbjct: 155 SKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQG-YSAKVDIWSLGCVVLEMFAGRRPWS 213
Query: 396 NMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCL 455
+ A++A++ + PP P
Sbjct: 214 DEEAIAAMFKLG--------------------NKRSAPP-----------------IPPD 236
Query: 456 QSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
S + S F+++C NP +RP++ LL H
Sbjct: 237 VSMNLSPVALDFLNACFTINPDNRPTARELLQH 269
Score = 107 bits (268), Expect = 1e-25
Identities = 53/142 (37%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVL 64
L+ L H N ++Y G + + +EY G S + + R +E+ + VL
Sbjct: 60 ETLKDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGR-FEEQLVRFFTEQVL 118
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASI--KCPANSFVGTPYWMA 118
GL YLHS G +HRD+KA N+L+ G K++DFG S I S G+ +WMA
Sbjct: 119 EGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMA 178
Query: 119 PEVILAMDEGQYDGKVDVWSLG 140
PEVI + +G Y KVD+WSLG
Sbjct: 179 PEVIHSYSQG-YSAKVDIWSLG 199
Score = 49.4 bits (118), Expect = 3e-06
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 604 NNSNYSSLFSPQLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIH 662
Y S+F +EY G S + + R +E+ + VL GL YLHS G +H
Sbjct: 78 TTEEYLSIF-----LEYVPGGSIGSCLRTYGR-FEEQLVRFFTEQVLEGLAYLHSKGILH 131
Query: 663 RDVKAGNILLTETGTVKL 680
RD+KA N+L+ G K+
Sbjct: 132 RDLKADNLLVDADGICKI 149
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 129 bits (325), Expect = 4e-33
Identities = 97/337 (28%), Positives = 141/337 (41%), Gaps = 68/337 (20%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKM-----SYLGKQCAEKWADILKEIRFLRQ 218
+E L +IG GS+G V+ R + +IVAIKK + K+ A L+EIR L+Q
Sbjct: 3 YEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIA------LREIRMLKQ 56
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
LKHPN + + R LV EYC +
Sbjct: 57 LKHPNLVNLIEVFRRKRKLHLVFEYC---------------------------------D 83
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
H L E + R + E I I L+ +N+ H IHRDVK NIL+T+ G +KL D
Sbjct: 84 HTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCD 143
Query: 339 FGSASIKCPANS----FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
FG A I +V T ++ APE+++ + QY VDVW++G EL +P +
Sbjct: 144 FGFARILTGPGDDYTDYVATRWYRAPELLVG--DTQYGPPVDVWAIGCVFAELLTGQPLW 201
Query: 395 FNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPC 454
+ + LY I KT+ R F+ N I + +T
Sbjct: 202 PGKSDVDQLYLI---------------RKTLGDLIPRHQQIFSTNQFFKGLSIPEPETRE 246
Query: 455 LQSSDWSDTFAH---FVSSCLAKNPADRPSSGRLLTH 488
S + + + F+ CL +P +R S LL H
Sbjct: 247 PLESKFPNISSPALSFLKGCLQMDPTERLSCEELLEH 283
Score = 102 bits (255), Expect = 7e-24
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
+L+QLKHPN + + R LV EYC + + +E + R + E I I L+
Sbjct: 53 MLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQA 112
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANS----FVGTPYWMAPEVI 122
+N+ H IHRDVK NIL+T+ G +KL DFG A I +V T ++ APE++
Sbjct: 113 VNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELL 172
Query: 123 LAMDEGQYDGKVDVWSLG 140
+ + QY VDVW++G
Sbjct: 173 VG--DTQYGPPVDVWAIG 188
Score = 61.6 bits (150), Expect = 3e-10
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LV EYC + + +E + R + E I I L+ +N+ H IHRDVK NIL+T+
Sbjct: 77 LVFEYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQ 136
Query: 676 GTVKL 680
G +KL
Sbjct: 137 GQIKL 141
>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii FA2-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii FA2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes FA2 and CNK4. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii FA2 was discovered
in a genetic screen for deflagellation-defective
mutants. It is essential for
basal-body/centriole-associated microtubule severing,
and plays a role in cell cycle progression. No cellular
function has yet been ascribed to CNK4.
Length = 256
Score = 128 bits (322), Expect = 4e-33
Identities = 86/327 (26%), Positives = 131/327 (40%), Gaps = 81/327 (24%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
FE L +IG GSFG V+ + + A+K++ E+ + + E R L +L
Sbjct: 2 FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRRER-EEAIDEARVLAKLDSSY 60
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
I Y +L +VMEY G+ + LK
Sbjct: 61 IIRYYESFLDKGKLNIVMEYAEN--------------------GDLHKLLKMQ------- 93
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
RPL E+++ +L GL +LHS +HRD+K+ N+ L VK+ D G A
Sbjct: 94 ----RGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAK 149
Query: 344 IKCP----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNA 399
+ AN+ VGTPY+++PE+ ++ Y+ K DVW+LG+ E K P F+ N
Sbjct: 150 LLSDNTNFANTIVGTPYYLSPELC---EDKPYNEKSDVWALGVVLYECCTGKHP-FDANN 205
Query: 400 MSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSD 459
AL ++K I PP +S +Y
Sbjct: 206 QGAL-----------------ILKIIRG---VFPP------VSQMY-------------- 225
Query: 460 WSDTFAHFVSSCLAKNPADRPSSGRLL 486
S A + CL K+ RP + +LL
Sbjct: 226 -SQQLAQLIDQCLTKDYRQRPDTFQLL 251
Score = 105 bits (264), Expect = 2e-25
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 9/143 (6%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVH-KRPLKEEEIAAICSG 62
+ +L +L I Y +L +VMEY G ++++ RPL E+++
Sbjct: 50 ARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQ 109
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCP----ANSFVGTPYWMA 118
+L GL +LHS +HRD+K+ N+ L VK+ D G A + AN+ VGTPY+++
Sbjct: 110 ILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLS 169
Query: 119 PEVILAMDEGQYDGKVDVWSLGI 141
PE+ ++ Y+ K DVW+LG+
Sbjct: 170 PELC---EDKPYNEKSDVWALGV 189
Score = 51.0 bits (122), Expect = 9e-07
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 616 LVMEYCL-GSASDIIEVH-KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
+VMEY G ++++ RPL E+++ +L GL +LHS +HRD+K+ N+ L
Sbjct: 76 IVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLD 135
Query: 674 ETGTVKL 680
VK+
Sbjct: 136 AYDNVKI 142
>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 10.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein Kinase 10 (CDK10) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK10 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK10, also called PISSLRE, is essential for
cell growth and proliferation, and acts through the G2/M
phase of the cell cycle. CDK10 has also been identified
as an important factor in endocrine therapy resistance
in breast cancer. CDK10 silencing increases the
transcription of c-RAF and the activation of the p42/p44
MAPK pathway, which leads to antiestrogen resistance.
Patients who express low levels of CDK10 relapse early
on tamoxifen.
Length = 309
Score = 129 bits (326), Expect = 6e-33
Identities = 80/247 (32%), Positives = 114/247 (46%), Gaps = 56/247 (22%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWAD-----ILKEI 213
FE L IG G++G VY AR S EIVA+KK+ + D L+EI
Sbjct: 4 RSVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRM------DNERDGIPISSLREI 57
Query: 214 RFLRQLKHPNTIEYRGCYLRDH--TAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQ 271
L L+HPN +E + + H + +LVMEYC E++ + + L
Sbjct: 58 TLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYC-------------EQD-----LASLLD 99
Query: 272 QLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 331
+ P E ++ + +LRGL YLH IHRD+K N+LLT+
Sbjct: 100 NMPT---------------PFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDK 144
Query: 332 GTVKLADFGSAS-IKCPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI-- 385
G +K+ADFG A PA V T ++ APE++L Y +D+W++G CI
Sbjct: 145 GCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTT--YTTAIDMWAVG--CILA 200
Query: 386 ELAERKP 392
EL KP
Sbjct: 201 ELLAHKP 207
Score = 103 bits (258), Expect = 4e-24
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 7 LLRQLKHPNTIEYRGCYLRDH--TAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVL 64
LL L+HPN +E + + H + +LVMEYC + +++ P E ++ + +L
Sbjct: 59 LLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLL 118
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS-IKCPANSF---VGTPYWMAPE 120
RGL YLH IHRD+K N+LLT+ G +K+ADFG A PA V T ++ APE
Sbjct: 119 RGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPE 178
Query: 121 VILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKE 158
++L Y +D+W++G +AEL +
Sbjct: 179 LLLGCTT--YTTAIDMWAVGCI--------LAELLAHK 206
Score = 64.7 bits (158), Expect = 3e-11
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 610 SLFSPQLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGN 669
S+F LVMEYC + +++ P E ++ + +LRGL YLH IHRD+K N
Sbjct: 82 SIF---LVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSN 138
Query: 670 ILLTETGTVKL 680
+LLT+ G +K+
Sbjct: 139 LLLTDKGCLKI 149
>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal
Byr2-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Byr2-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae
and Cryptococcus neoformans Ste11, and related proteins.
They contain an N-terminal SAM (sterile alpha-motif)
domain, which mediates protein-protein interaction, and
a C-terminal catalytic domain. MAPKKKs phosphorylate and
activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which
in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Fission
yeast Byr2 is regulated by Ras1. It responds to
pheromone signaling and controls mating through the MAPK
pathway. Budding yeast Ste11 functions in MAPK cascades
that regulate mating, high osmolarity glycerol, and
filamentous growth responses.
Length = 267
Score = 128 bits (322), Expect = 7e-33
Identities = 81/260 (31%), Positives = 119/260 (45%), Gaps = 54/260 (20%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKM---SYLGKQCAEKWA--DILK-EIRFLRQLKHPN 223
IG GSFG+VY S E++A+K++ S K + D L EI L++L+H N
Sbjct: 8 IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN 67
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
++Y G L + +EY G + V + L F E
Sbjct: 68 IVQYLGSSLDADHLNIFLEYVPGGS--------------VAAL---LNNYGAFEE----- 105
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
L + I L+GLNYLH+ G IHRD+K NIL+ G +K++DFG S
Sbjct: 106 -------TLVRNFVRQI----LKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFG-IS 153
Query: 344 IKCPAN-----------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP 392
K AN S G+ +WMAPEV+ + Y K D+WSLG +E+ K
Sbjct: 154 KKLEANSLSTKTNGARPSLQGSVFWMAPEVV---KQTSYTRKADIWSLGCLVVEMLTGKH 210
Query: 393 PYFNMNAMSALYHIAQNDTP 412
P+ + + A++ I +N +P
Sbjct: 211 PFPDCTQLQAIFKIGENASP 230
Score = 99.5 bits (248), Expect = 4e-23
Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 15/146 (10%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
+LL++L+H N ++Y G L + +EY G + + + +E + +L+
Sbjct: 58 ALLKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILK 117
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN-----------SFVGTP 114
GLNYLH+ G IHRD+K NIL+ G +K++DFG S K AN S G+
Sbjct: 118 GLNYLHNRGIIHRDIKGANILVDNKGGIKISDFG-ISKKLEANSLSTKTNGARPSLQGSV 176
Query: 115 YWMAPEVILAMDEGQYDGKVDVWSLG 140
+WMAPEV+ + Y K D+WSLG
Sbjct: 177 FWMAPEVV---KQTSYTRKADIWSLG 199
Score = 52.2 bits (125), Expect = 4e-07
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 590 HHPVTHLSQHSYNNNNSNYSSLFSPQLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVL 649
H ++ Q+ ++ ++++ ++F +EY G + + + +E + +L
Sbjct: 64 QHE--NIVQYLGSSLDADHLNIF-----LEYVPGGSVAALLNNYGAFEETLVRNFVRQIL 116
Query: 650 RGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+GLNYLH+ G IHRD+K NIL+ G +K+
Sbjct: 117 KGLNYLHNRGIIHRDIKGANILVDNKGGIKI 147
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled
Receptor Kinase (GRK), Serum- and Glucocorticoid-induced
Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase
(p70S6K or S6K), among others. AGC kinases share an
activation mechanism based on the phosphorylation of up
to three sites: the activation loop (A-loop), the
hydrophobic motif (HM) and the turn motif.
Phosphorylation at the A-loop is required of most AGC
kinases, which results in a disorder-to-order transition
of the A-loop. The ordered conformation results in the
access of substrates and ATP to the active site. A
subset of AGC kinases with C-terminal extensions
containing the HM also requires phosphorylation at this
site. Phosphorylation at the HM allows the C-terminal
extension to form an ordered structure that packs into
the hydrophobic pocket of the catalytic domain, which
then reconfigures the kinase into an active bi-lobed
state. In addition, growth factor-activated AGC kinases
such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require
phosphorylation at the turn motif (also called tail or
zipper site), located N-terminal to the HM at the
C-terminal extension. AGC kinases regulate many cellular
processes including division, growth, survival,
metabolism, motility, and differentiation. Many are
implicated in the development of various human diseases.
Length = 250
Score = 126 bits (318), Expect = 2e-32
Identities = 84/322 (26%), Positives = 120/322 (37%), Gaps = 91/322 (28%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADI---LKEIRFLRQLKHPNTIE 226
+G GSFG V R + ++ A+K + K+ K ++ L E L ++ HP ++
Sbjct: 1 LGKGSFGKVLLVRKKDTGKLYAMKVLK---KKKIIKRKEVEHTLTERNILSRINHPFIVK 57
Query: 227 YRGCYLRDHTA-WLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
+ +LV+EY G E + L + F+E A F
Sbjct: 58 LH-YAFQTEEKLYLVLEYAPGG------------ELF-----SHLSKEGRFSEERARF-- 97
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK 345
A I L YLHSLG I+RD+K NILL G +KL DFG A
Sbjct: 98 ----------YAAEIVLA----LEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKEL 143
Query: 346 CP----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMS 401
N+F GTP ++APEV+L Y VD WSLG+ E+ KPP++ +
Sbjct: 144 SSEGSRTNTFCGTPEYLAPEVLL---GKGYGKAVDWWSLGVLLYEMLTGKPPFYAED-RK 199
Query: 402 ALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWS 461
+Y K + + P F S
Sbjct: 200 EIYE-----------------KIL-----KDPLRF--------------------PEFLS 217
Query: 462 DTFAHFVSSCLAKNPADRPSSG 483
+S L K+P R SG
Sbjct: 218 PEARDLISGLLQKDPTKRLGSG 239
Score = 104 bits (262), Expect = 5e-25
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 25/172 (14%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTA-WLVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGV 63
++L ++ HP ++ + +LV+EY G + R EE + +
Sbjct: 45 NILSRINHPFIVKLH-YAFQTEEKLYLVLEYAPGGELFSHLSKEGR-FSEERARFYAAEI 102
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCP----ANSFVGTPYWMAP 119
+ L YLHSLG I+RD+K NILL G +KL DFG A N+F GTP ++AP
Sbjct: 103 VLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAP 162
Query: 120 EVILAMDEGQYDGKVDVWSLGITPGSLKDPEIAEL------FDKEDPEKIFE 165
EV+L Y VD WSLG+ + E+ F ED ++I+E
Sbjct: 163 EVLL---GKGYGKAVDWWSLGVL--------LYEMLTGKPPFYAEDRKEIYE 203
Score = 54.4 bits (132), Expect = 5e-08
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 607 NYSSLFSPQLVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDV 665
L+ LV+EY G + R EE + ++ L YLHSLG I+RD+
Sbjct: 64 TEEKLY---LVLEYAPGGELFSHLSKEGR-FSEERARFYAAEIVLALEYLHSLGIIYRDL 119
Query: 666 KAGNILLTETGTVKL 680
K NILL G +KL
Sbjct: 120 KPENILLDADGHIKL 134
>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Phosphoinositide-dependent
kinase 1. Serine/Threonine Kinases (STKs),
Phosphoinositide-dependent kinase 1 (PDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PDK1
carries an N-terminal catalytic domain and a C-terminal
pleckstrin homology (PH) domain that binds
phosphoinositides. It phosphorylates the activation loop
of AGC kinases that are regulated by PI3K such as PKB,
SGK, and PKC, among others, and is crucial for their
activation. Thus, it contributes in regulating many
processes including metabolism, growth, proliferation,
and survival. PDK1 also has the ability to
autophosphorylate and is constitutively active in
mammalian cells. PDK1 is essential for normal embryo
development and is important in regulating cell volume.
Length = 280
Score = 126 bits (320), Expect = 2e-32
Identities = 78/350 (22%), Positives = 120/350 (34%), Gaps = 114/350 (32%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMS--YLGKQCAEKWADILKEIRFLRQLK- 220
F+ + IG GSF V A+ + + AIK + L K+ K+ I KE+ L +L
Sbjct: 3 FKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEV--LTRLNG 60
Query: 221 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLK---CFT 277
HP I+ + + + V+EY G LQ ++
Sbjct: 61 HPGIIKLYYTFQDEENLYFVLEYAPN--------------------GELLQYIRKYGSLD 100
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
E F + +L L YLHS G IHRD+K NILL + +K+
Sbjct: 101 EKCTRF----------------YAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKIT 144
Query: 338 DFGSASIKCP------------------------ANSFVGTPYWMAPEVILAMDEGQYDG 373
DFG+A + P SFVGT +++PE++ +E
Sbjct: 145 DFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELL---NEKPAGK 201
Query: 374 KVDVWSLGITCIELAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKP 433
D+W+LG ++ KPP F S+++ + I P
Sbjct: 202 SSDLWALGCIIYQMLTGKPP-FR------------------GSNEYLTFQKILKLEYSFP 242
Query: 434 PYFNMNAMSALYHIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSG 483
P F +A + L +P DR
Sbjct: 243 PNFPPDAKD------------------------LIEKLLVLDPQDRLGVN 268
Score = 91.1 bits (227), Expect = 3e-20
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 31/163 (19%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIE-VHKRP-LKEEEIAAICSGV 63
L R HP I+ + + + V+EY ++++ + K L E+ + +
Sbjct: 54 VLTRLNGHPGIIKLYYTFQDEENLYFVLEYAPNG--ELLQYIRKYGSLDEKCTRFYAAEI 111
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCP----------------- 106
L L YLHS G IHRD+K NILL + +K+ DFG+A + P
Sbjct: 112 LLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQ 171
Query: 107 -------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 142
SFVGT +++PE++ +E D+W+LG
Sbjct: 172 IEKNRRRFASFVGTAEYVSPELL---NEKPAGKSSDLWALGCI 211
Score = 54.5 bits (132), Expect = 7e-08
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 609 SSLFSPQLVMEYCLGSASDIIE-VHKRP-LKEEEIAAICSGVLRGLNYLHSLGRIHRDVK 666
+L+ V+EY ++++ + K L E+ + +L L YLHS G IHRD+K
Sbjct: 75 ENLY---FVLEYAPNG--ELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLK 129
Query: 667 AGNILLTETGTVKL----------DTPDEQAGNDSSKSNSITSEHS 702
NILL + +K+ ++ + + E +
Sbjct: 130 PENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKN 175
>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase (MAPK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MAPK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAPKs serve as important
mediators of cellular responses to extracellular
signals. They control critical cellular functions
including differentiation, proliferation, migration, and
apoptosis. They are also implicated in the pathogenesis
of many diseases including multiple types of cancer,
stroke, diabetes, and chronic inflammation. Typical MAPK
pathways involve a triple kinase core cascade comprising
of the MAPK, which is phosphorylated and activated by a
MAPK kinase (MAP2K or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAP3K or MKKK). Each cascade is activated either by a
small GTP-binding protein or by an adaptor protein,
which transmits the signal either directly to a MAP3K to
start the triple kinase core cascade or indirectly
through a mediator kinase, a MAP4K. There are three main
typical MAPK subfamilies: Extracellular signal-Regulated
Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38.
Some MAPKs are atypical in that they are not regulated
by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7.
Length = 330
Score = 126 bits (320), Expect = 6e-32
Identities = 91/363 (25%), Positives = 136/363 (37%), Gaps = 113/363 (31%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMS------YLGKQCAEKWADILKEIRFLR 217
+E L+ IG G++G V A + VAIKK+S K+ IL+EI+ LR
Sbjct: 2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKR-------ILREIKLLR 54
Query: 218 QLKHPNTIEYRGCYLRD----------HTAWLVMEYCLGSASDIIEVHWIEREFHVEGMG 267
L+H N I L D + ++V E M
Sbjct: 55 HLRHENIIG-----LLDILRPPSPEDFNDVYIVTEL----------------------ME 87
Query: 268 NRLQQ-LKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNI 326
L + +K +PL ++ I +LRGL YLHS IHRD+K NI
Sbjct: 88 TDLHKVIK-------------SPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNI 134
Query: 327 LLTETGTVKLADFGSASIKCPANS-------FVGTPYWMAPEVILAMDEGQYDGKVDVWS 379
L+ +K+ DFG A P +V T ++ APE++L+ Y +D+WS
Sbjct: 135 LVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSR--YTKAIDIWS 192
Query: 380 LGITCI--ELAERKP--P---YFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERK 432
+G CI EL RKP P Y + L I + L + +K I+
Sbjct: 193 VG--CIFAELLTRKPLFPGRDYIDQ-----LNLIVE----VLGTPSEEDLKFIT------ 235
Query: 433 PPYFNMNAMSALYHIAQNDTPCLQSSDWSDTFA-------HFVSSCLAKNPADRPSSGRL 485
+ A + L + + S F + L +P R ++
Sbjct: 236 ----SEKARNYLKSLPKKPKK-----PLSKLFPGASPEAIDLLEKMLVFDPKKRITADEA 286
Query: 486 LTH 488
L H
Sbjct: 287 LAH 289
Score = 92.6 bits (231), Expect = 3e-20
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 31/154 (20%)
Query: 7 LLRQLKHPNTIEYRGCYLRD----------HTAWLVMEYCLGSASD---IIEVHKRPLKE 53
LLR L+H N I L D + ++V E +D +I+ +PL +
Sbjct: 52 LLRHLRHENIIG-----LLDILRPPSPEDFNDVYIVTEL---METDLHKVIK-SPQPLTD 102
Query: 54 EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANS---- 109
+ I +LRGL YLHS IHRD+K NIL+ +K+ DFG A P
Sbjct: 103 DHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGF 162
Query: 110 ---FVGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
+V T ++ APE++L+ Y +D+WS+G
Sbjct: 163 LTEYVVTRWYRAPELLLSSSR--YTKAIDIWSVG 194
Score = 53.7 bits (130), Expect = 2e-07
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 586 RHHHHHPVTHLSQHSYNNNNSNYSSLFSPQLVMEYCLGSASD---IIEVHKRPLKEEEIA 642
RH H + L + +++ ++ +V E +D +I+ +PL ++ I
Sbjct: 54 RHLRHENIIGLLDILRPPSPEDFNDVY---IVTEL---METDLHKVIK-SPQPLTDDHIQ 106
Query: 643 AICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+LRGL YLHS IHRD+K NIL+ +K+
Sbjct: 107 YFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKI 144
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein
Serine/Threonine Kinase, Yank1. Serine/Threonine
Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Yank1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily
contains uncharacterized STKs with similarity to the
human protein designated Yank1 or STK32A.
Length = 258
Score = 123 bits (311), Expect = 2e-31
Identities = 91/292 (31%), Positives = 126/292 (43%), Gaps = 52/292 (17%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQ-CAEKWA--DILKEIRFLRQLK 220
FE LR IG G+FG V + ++++ A+K M+ KQ C EK + ++L E R L++L
Sbjct: 2 FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMN---KQKCVEKGSVRNVLNERRILQELN 58
Query: 221 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHF 280
HP + + + +LV++ LG D+ +H L Q F+E
Sbjct: 59 HPFLVNLWYSFQDEENMYLVVDLLLGG--DL--------RYH-------LSQKVKFSEEQ 101
Query: 281 ALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
F I I L YLHS G IHRD+K NILL E G V + DF
Sbjct: 102 VKF------------WICEIVLA----LEYLHSKGIIHRDIKPDNILLDEQGHVHITDFN 145
Query: 341 SASIKCP---ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN- 396
A+ P S GTP +MAPEV+ Y VD WSLG+T E K PY
Sbjct: 146 IATKVTPDTLTTSTSGTPGYMAPEVLCRQG---YSVAVDWWSLGVTAYECLRGKRPYRGH 202
Query: 397 ----MNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSAL 444
+ + A A P S++ I I+ ER P + + L
Sbjct: 203 SRTIRDQIRAKQETADVLYPATWSTE--AIDAINKLLERDPQKRLGDNLKDL 252
Score = 90.8 bits (226), Expect = 3e-20
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDI---IEVHKRPLKEEEIAAICSGV 63
+L++L HP + + + +LV++ LG D+ + K EE++ +
Sbjct: 53 ILQELNHPFLVNLWYSFQDEENMYLVVDLLLGG--DLRYHLS-QKVKFSEEQVKFWICEI 109
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCP---ANSFVGTPYWMAPE 120
+ L YLHS G IHRD+K NILL E G V + DF A+ P S GTP +MAPE
Sbjct: 110 VLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPE 169
Query: 121 VILAMDEGQYDGKVDVWSLGIT 142
V+ Y VD WSLG+T
Sbjct: 170 VLCRQG---YSVAVDWWSLGVT 188
Score = 47.7 bits (114), Expect = 8e-06
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 632 HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
K EE++ ++ L YLHS G IHRD+K NILL E G V +
Sbjct: 93 QKVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHI 141
>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP
kinase kinase 7 (MKK7) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK7 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK7 is a dual-specificity PK that phosphorylates and
activates its downstream target, c-Jun N-terminal kinase
(JNK), on specific threonine and tyrosine residues.
Although MKK7 is capable of dual phosphorylation, it
prefers to phosphorylate the threonine residue of JNK.
Thus, optimal activation of JNK requires both MKK4 (not
included in this subfamily) and MKK7. MKK7 is primarily
activated by cytokines. MKK7 is essential for liver
formation during embryogenesis. It plays roles in G2/M
cell cycle arrest and cell growth. In addition, it is
involved in the control of programmed cell death, which
is crucial in oncogenesis, cancer chemoresistance, and
antagonism to TNFalpha-induced killing, through its
inhibition by Gadd45beta and the subsequent suppression
of the JNK cascade.
Length = 296
Score = 123 bits (311), Expect = 3e-31
Identities = 95/357 (26%), Positives = 143/357 (40%), Gaps = 92/357 (25%)
Query: 155 FDKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIR 214
D D E+L EIG G+ G VY R + ++A+K+M G E+ IL ++
Sbjct: 12 ADLND----LENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGN--KEENKRILMDLD 65
Query: 215 FLRQLKH--PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQ 272
+ H P ++ G ++ D ++ ME M L +
Sbjct: 66 VV-LKSHDCPYIVKCYGYFITDSDVFICMEL----------------------MSTCLDK 102
Query: 273 LKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYL---HSLGRIHRDVKAGNILLT 329
L + P+ E+ + + +++ L+YL H + IHRDVK NILL
Sbjct: 103 LLKRIQG-----------PIPEDILGKMTVAIVKALHYLKEKHGV--IHRDVKPSNILLD 149
Query: 330 ETGTVKLADFGSAS--IKCPANS-FVGTPYWMAPEVILAMDE-GQYDGKVDVWSLGITCI 385
+G VKL DFG + + A + G +MAPE I D +YD + DVWSLGI+ +
Sbjct: 150 ASGNVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLV 209
Query: 386 ELAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALY 445
ELA + PY N +++ V L
Sbjct: 210 ELATGQFPYKNCK------------------TEFEV----------------------LT 229
Query: 446 HIAQNDTPCLQSSD-WSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSVLV 501
I Q + P L ++ +S F FV CL K+ RP LL H + R + V V
Sbjct: 230 KILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQHPFIRRYETAEVDV 286
Score = 80.5 bits (199), Expect = 2e-16
Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 14 PNTIEYRGCYLRDHTAWLVMEYCLGSASD-IIEVHKRPLKEEEIAAICSGVLRGLNYL-- 70
P ++ G ++ D ++ ME + + D +++ + P+ E+ + + +++ L+YL
Sbjct: 74 PYIVKCYGYFITDSDVFICME-LMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKE 132
Query: 71 -HSLGRIHRDVKAGNILLTETGTVKLADFGSAS--IKCPANS-FVGTPYWMAPEVILAMD 126
H + IHRDVK NILL +G VKL DFG + + A + G +MAPE I D
Sbjct: 133 KHGV--IHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPD 190
Query: 127 E-GQYDGKVDVWSLGIT 142
+YD + DVWSLGI+
Sbjct: 191 PNPKYDIRADVWSLGIS 207
Score = 42.0 bits (99), Expect = 7e-04
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 633 KRPLKEEEIAAICSGVLRGLNYL---HSLGRIHRDVKAGNILLTETGTVKL 680
+ P+ E+ + + +++ L+YL H + IHRDVK NILL +G VKL
Sbjct: 108 QGPIPEDILGKMTVAIVKALHYLKEKHGV--IHRDVKPSNILLDASGNVKL 156
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine
Kinase, Cell Cycle-Related Kinase. Serine/Threonine
Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CCRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CCRK was previously called p42. It is a
Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK)
which is essential for the activation of CDK2. It is
indispensable for cell growth and has been implicated in
the progression of glioblastoma multiforme. In the
heart, a splice variant of CCRK with a different
C-terminal half is expressed, this variant promotes
cardiac cell growth and survival and is significantly
down-regulated during the development of heart failure.
Length = 286
Score = 123 bits (311), Expect = 4e-31
Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 52/239 (21%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWAD-ILKEIRFLRQLKHPNTI 225
L IG G+ G V+ A+ + E VA+KK+ ++ + L+EI+ L+ +HP +
Sbjct: 5 LGRIGEGAHGIVFKAKDRETGETVALKKV--ALRRLEGGIPNQALREIKALQACQHPYVV 62
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
+ + LVMEY S+++ + E
Sbjct: 63 KLLDVFPHGSGFVLVMEYMPSDLSEVLR----DEE------------------------- 93
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----- 340
RPL E ++ + +L+G+ Y+H+ G +HRD+K N+L++ G +K+ADFG
Sbjct: 94 ----RPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLF 149
Query: 341 SASIKCPANSFVGTPYWMAPEVILAMDEGQ--YDGKVDVWSLGITCIELAE--RKPPYF 395
S + V T ++ APE++ G YD VD+W++G CI AE P F
Sbjct: 150 SEEEPRLYSHQVATRWYRAPELLY----GARKYDPGVDLWAVG--CI-FAELLNGSPLF 201
Score = 106 bits (267), Expect = 2e-25
Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 11/140 (7%)
Query: 8 LRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGL 67
L+ +HP ++ + LVMEY S+++ +RPL E ++ + +L+G+
Sbjct: 53 LQACQHPYVVKLLDVFPHGSGFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGV 112
Query: 68 NYLHSLGRIHRDVKAGNILLTETGTVKLADFG-----SASIKCPANSFVGTPYWMAPEVI 122
Y+H+ G +HRD+K N+L++ G +K+ADFG S + V T ++ APE++
Sbjct: 113 AYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELL 172
Query: 123 LAMDEGQ--YDGKVDVWSLG 140
G YD VD+W++G
Sbjct: 173 Y----GARKYDPGVDLWAVG 188
Score = 67.3 bits (165), Expect = 4e-12
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LVMEY S+++ +RPL E ++ + +L+G+ Y+H+ G +HRD+K N+L++
Sbjct: 76 LVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISAD 135
Query: 676 GTVKL 680
G +K+
Sbjct: 136 GVLKI 140
>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
Byr1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Byr1 from
Schizosaccharomyces pombe, FUZ7 from Ustilago maydis,
and related proteins. Byr1 phosphorylates its downstream
target, the MAPK Spk1, and is regulated by the MAPKKK
Byr2. The Spk1 cascade is pheromone-responsive and is
essential for sporulation and sexual differentiation in
fission yeast. FUZ7 phosphorylates and activates its
target, the MAPK Crk1, which is required in mating and
virulence in U. maydis.
Length = 284
Score = 121 bits (304), Expect = 2e-30
Identities = 90/328 (27%), Positives = 146/328 (44%), Gaps = 71/328 (21%)
Query: 165 EDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
E + ++G G+ G+V + + + ++A K + K K IL+E++ + + + P
Sbjct: 8 ETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRK--QILRELQIMHECRSPYI 65
Query: 225 IEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
+ + G +L ++ + ME+ ++ ++R + G
Sbjct: 66 VSFYGAFLNENNICMCMEF--------MDCGSLDRIYKKGG------------------- 98
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRI-HRDVKAGNILLTETGTVKLADFGSAS 343
P+ E + I V+ GL YL+++ RI HRD+K NIL+ G +KL DFG +
Sbjct: 99 ------PIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSG 152
Query: 344 --IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMS 401
I A++FVGT +M+PE I G+Y K DVWSLGI+ IELA K P+ A S
Sbjct: 153 ELINSIADTFVGTSTYMSPERIQG---GKYTVKSDVWSLGISIIELALGKFPF----AFS 205
Query: 402 ALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWS 461
+ Q+D M + L I Q P L SSD+
Sbjct: 206 NIDDDGQDDP--------------------------MGILDLLQQIVQEPPPRLPSSDFP 239
Query: 462 DTFAHFVSSCLAKNPADRPSSGRLLTHD 489
+ FV +CL K+P +RP+ +L
Sbjct: 240 EDLRDFVDACLLKDPTERPTPQQLCAMP 267
Score = 90.6 bits (225), Expect = 6e-20
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 6/132 (4%)
Query: 14 PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSL 73
P + + G +L ++ + ME+ + D I P+ E + I V+ GL YL+++
Sbjct: 63 PYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNV 122
Query: 74 GRI-HRDVKAGNILLTETGTVKLADFGSAS--IKCPANSFVGTPYWMAPEVILAMDEGQY 130
RI HRD+K NIL+ G +KL DFG + I A++FVGT +M+PE I G+Y
Sbjct: 123 HRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQG---GKY 179
Query: 131 DGKVDVWSLGIT 142
K DVWSLGI+
Sbjct: 180 TVKSDVWSLGIS 191
Score = 45.2 bits (107), Expect = 7e-05
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRI-HRDVKAGNILLTE 674
+ ME+ + D I P+ E + I V+ GL YL+++ RI HRD+K NIL+
Sbjct: 80 MCMEFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNS 139
Query: 675 TGTVKL 680
G +KL
Sbjct: 140 RGQIKL 145
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity
Protein Kinases, MAP kinase kinases 3 and 6. Protein
kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MKK3 and MKK6 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK3 and MKK6 are dual-specificity PKs that
phosphorylate and activate their downstream target, p38
MAPK, on specific threonine and tyrosine residues.
MKK3/6 plays roles in the regulation of cell cycle
progression, cytokine- and stress-induced apoptosis,
oncogenic transformation, and adult tissue regeneration.
In addition, MKK6 plays a critical role in osteoclast
survival in inflammatory disease while MKK3 is
associated with tumor invasion, progression, and poor
patient survival in glioma.
Length = 283
Score = 120 bits (304), Expect = 3e-30
Identities = 94/341 (27%), Positives = 139/341 (40%), Gaps = 90/341 (26%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRF-LRQLKHP 222
E + E+G G++G V R + + I+A+K++ +K +L ++ +R + P
Sbjct: 3 LEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQK--RLLMDLDISMRSVDCP 60
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
T+ + G R+ W+ ME M L +
Sbjct: 61 YTVTFYGALFREGDVWICMEV----------------------MDTSLDK---------- 88
Query: 283 FNFEVHKRPL--KEEEIAAICSGVLRGLNYLHS-LGRIHRDVKAGNILLTETGTVKLADF 339
F +V+ + L E+ + I +++ L YLHS L IHRDVK N+L+ G VKL DF
Sbjct: 89 FYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDF 148
Query: 340 G-SASIKCPANSFVGT------PYWMAPEVI-LAMDEGQYDGKVDVWSLGITCIELAERK 391
G S + +S T PY MAPE I +++ YD K DVWSLGIT IELA +
Sbjct: 149 GISGYL---VDSVAKTIDAGCKPY-MAPERINPELNQKGYDVKSDVWSLGITMIELATGR 204
Query: 392 PPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQND 451
PY TP Q L + +
Sbjct: 205 FPY------------DSWKTPFQQ----------------------------LKQVVEEP 224
Query: 452 TPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVT 492
+P L + +S F FV+ CL KN +RP+ LL H
Sbjct: 225 SPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQHPFFE 265
Score = 93.6 bits (233), Expect = 5e-21
Identities = 55/147 (37%), Positives = 76/147 (51%), Gaps = 16/147 (10%)
Query: 8 LRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDII-EVHKRPL--KEEEIAAICSGVL 64
+R + P T+ + G R+ W+ ME S +V+ + L E+ + I ++
Sbjct: 54 MRSVDCPYTVTFYGALFREGDVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIV 113
Query: 65 RGLNYLHS-LGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPANSFVGT------PYW 116
+ L YLHS L IHRDVK N+L+ G VKL DFG S + +S T PY
Sbjct: 114 KALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYL---VDSVAKTIDAGCKPY- 169
Query: 117 MAPEVI-LAMDEGQYDGKVDVWSLGIT 142
MAPE I +++ YD K DVWSLGIT
Sbjct: 170 MAPERINPELNQKGYDVKSDVWSLGIT 196
Score = 53.6 bits (129), Expect = 1e-07
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 617 VMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHS-LGRIHRDVKAGNILLTET 675
VM+ L + + E+ + I +++ L YLHS L IHRDVK N+L+
Sbjct: 81 VMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRN 140
Query: 676 GTVKL 680
G VKL
Sbjct: 141 GQVKL 145
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent
protein Kinase 9-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK9-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK9 and CDK12 from higher eukaryotes, yeast
BUR1, C-type plant CDKs (CdkC), and similar proteins.
CDK9, BUR1, and CdkC are functionally equivalent. They
act as a kinase for the C-terminal domain of RNA
polymerase II and participate in regulating mutliple
steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the
cyclin BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 119 bits (300), Expect = 1e-29
Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 53/243 (21%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWA-DI--LKEIRFLRQLK 220
+E + +IG G++G VY AR + E+VA+KK+ + EK I ++EI+ L++L+
Sbjct: 1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKI----RMENEKEGFPITAIREIKLLQKLR 56
Query: 221 HPNTIEYRGCYLRDH--TAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
HPN + + + ++V EY + +++ E Q+KC
Sbjct: 57 HPNIVRLKEIVTSKGKGSIYMVFEYMDHDLTGLLDSP----EVKFT-----ESQIKC--- 104
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
+L GL YLHS G +HRD+K NIL+ G +KLAD
Sbjct: 105 ---------------------YMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLAD 143
Query: 339 FGSASIKCPANSF-----VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI--ELAERK 391
FG A NS V T ++ PE++L +Y +VD+WS+G CI EL K
Sbjct: 144 FGLARPYTKRNSADYTNRVITLWYRPPELLLG--ATRYGPEVDMWSVG--CILAELFLGK 199
Query: 392 PPY 394
P +
Sbjct: 200 PIF 202
Score = 91.5 bits (228), Expect = 3e-20
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 29/177 (16%)
Query: 7 LLRQLKHPNTIEYRGCYLRDH--TAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVL 64
LL++L+HPN + + + ++V EY + +++ + E +I +L
Sbjct: 51 LLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLL 110
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSF-----VGTPYWMAP 119
GL YLHS G +HRD+K NIL+ G +KLADFG A NS V T ++ P
Sbjct: 111 EGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPP 170
Query: 120 EVILAMDEGQYDGKVDVWSLG-ITPGSLKDPEIAELFDKEDP----------EKIFE 165
E++L +Y +VD+WS+G I +AELF + EKIFE
Sbjct: 171 ELLLG--ATRYGPEVDMWSVGCI---------LAELFLGKPIFQGSTELEQLEKIFE 216
Score = 54.1 bits (131), Expect = 8e-08
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
+V EY + +++ + E +I +L GL YLHS G +HRD+K NIL+
Sbjct: 77 MVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINND 136
Query: 676 GTVKL 680
G +KL
Sbjct: 137 GVLKL 141
>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP
kinase kinase 4 (MKK4) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK4 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK4 is a dual-specificity PK that
phosphorylates and activates the downstream targets,
c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific
threonine and tyrosine residues. JNK and p38 are
collectively known as stress-activated MAPKs, as they
are activated in response to a variety of environmental
stresses and pro-inflammatory cytokines. Their
activation is associated with the induction of cell
death. Mice deficient in MKK4 die during embryogenesis
and display anemia, severe liver hemorrhage, and
abnormal hepatogenesis. MKK4 may also play roles in the
immune system and in cardiac hypertrophy. It plays a
major role in cancer as a tumor and metastasis
suppressor. Under certain conditions, MKK4 is
pro-oncogenic.
Length = 288
Score = 118 bits (298), Expect = 2e-29
Identities = 96/343 (27%), Positives = 134/343 (39%), Gaps = 99/343 (28%)
Query: 165 EDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQL----- 219
+DL EIG G+FG V S I+A+K++ D ++ R L L
Sbjct: 7 KDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRST--------VDEKEQKRLLMDLDVVMR 58
Query: 220 --KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
P +++ G R+ W+ ME L S
Sbjct: 59 SSDCPYIVKFYGALFREGDCWICME--LMDIS---------------------------L 89
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYL-HSLGRIHRDVKAGNILLTETGTVKL 336
+ F + +EV K + EE + I ++ LNYL L IHRDVK NILL G +KL
Sbjct: 90 DKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKL 149
Query: 337 ADFG-SASIKCPANSFVGT------PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
DFG S + +S T PY MAPE I YD + DVWSLGIT E+A
Sbjct: 150 CDFGISGQL---VDSIAKTRDAGCRPY-MAPERIDPSARDGYDVRSDVWSLGITLYEVAT 205
Query: 390 RKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQ 449
K PY P +N + L + +
Sbjct: 206 GKFPY---------------------------------------PKWN-SVFDQLTQVVK 225
Query: 450 NDTPCLQSSD---WSDTFAHFVSSCLAKNPADRPSSGRLLTHD 489
D P L +S+ +S +F +F++ CL K+ + RP LL H
Sbjct: 226 GDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEHP 268
Score = 85.5 bits (212), Expect = 3e-18
Identities = 55/143 (38%), Positives = 69/143 (48%), Gaps = 20/143 (13%)
Query: 14 PNTIEYRGCYLRDHTAWLVMEYCLGSAS------DIIEVHKRPLKEEEIAAICSGVLRGL 67
P +++ G R+ W+ ME L S + EV K + EE + I ++ L
Sbjct: 63 PYIVKFYGALFREGDCWICME--LMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKAL 120
Query: 68 NYL-HSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPANSFVGT------PYWMAP 119
NYL L IHRDVK NILL G +KL DFG S + +S T PY MAP
Sbjct: 121 NYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQL---VDSIAKTRDAGCRPY-MAP 176
Query: 120 EVILAMDEGQYDGKVDVWSLGIT 142
E I YD + DVWSLGIT
Sbjct: 177 ERIDPSARDGYDVRSDVWSLGIT 199
Score = 47.4 bits (113), Expect = 1e-05
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 630 EVHKRPLKEEEIAAICSGVLRGLNYL-HSLGRIHRDVKAGNILLTETGTVKL 680
EV K + EE + I ++ LNYL L IHRDVK NILL G +KL
Sbjct: 98 EVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKL 149
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 117 bits (296), Expect = 2e-29
Identities = 67/242 (27%), Positives = 96/242 (39%), Gaps = 51/242 (21%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYRG 229
I G++G V+ A+ + +I AIK + + +L E L Q + P ++
Sbjct: 1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYY 60
Query: 230 CYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEVHK 289
+ +LVMEY G G+ L E+
Sbjct: 61 SFQGKKNLYLVMEYLPG--------------------GD----LASLLENVGSL------ 90
Query: 290 RPLKEEEIAAICSG-VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-------S 341
+E++A I ++ L YLHS G IHRD+K NIL+ G +KL DFG
Sbjct: 91 ----DEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVR 146
Query: 342 ASIKCPANS-----FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
I + VGTP ++APEVIL + VD WSLG E PP F+
Sbjct: 147 RQINLNDDEKEDKRIVGTPDYIAPEVILGQG---HSKTVDWWSLGCILYEFLVGIPP-FH 202
Query: 397 MN 398
Sbjct: 203 GE 204
Score = 102 bits (256), Expect = 4e-24
Identities = 56/180 (31%), Positives = 77/180 (42%), Gaps = 37/180 (20%)
Query: 8 LRQLKHPNTIEYRGCYLRDHTAWLVMEYC----LGSASDIIEVHKRPLKEEEIAAICSGV 63
L Q + P ++ + +LVMEY L S + + L E+ + +
Sbjct: 47 LSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLASLLENVGS----LDEDVARIYIAEI 102
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-------SASIKCPANS-----FV 111
+ L YLHS G IHRD+K NIL+ G +KL DFG I + V
Sbjct: 103 VLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIV 162
Query: 112 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITPGSLKDPEIAEL------FDKEDPEKIFE 165
GTP ++APEVIL + VD WSLG + E F E PE+IF+
Sbjct: 163 GTPDYIAPEVILGQG---HSKTVDWWSLGCI--------LYEFLVGIPPFHGETPEEIFQ 211
Score = 56.1 bits (136), Expect = 2e-08
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 616 LVMEYC----LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
LVMEY L S + + L E+ + ++ L YLHS G IHRD+K NIL
Sbjct: 70 LVMEYLPGGDLASLLENVGS----LDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNIL 125
Query: 672 LTETGTVKL 680
+ G +KL
Sbjct: 126 IDSNGHLKL 134
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 7.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 7 (CDK7) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK7 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK7
plays essential roles in the cell cycle and in
transcription. It associates with cyclin H and MAT1 and
acts as a CDK-Activating Kinase (CAK) by phosphorylating
and activating cell cycle CDKs (CDK1/2/4/6). In the
brain, it activates CDK5. CDK7 is also a component of
the general transcription factor TFIIH, which
phosphorylates the C-terminal domain (CTD) of RNA
polymerase II when it is bound with unphosphorylated
DNA, as present in the pre-initiation complex. Following
phosphorylation, the CTD dissociates from the DNA which
allows transcription initiation.
Length = 298
Score = 118 bits (297), Expect = 4e-29
Identities = 74/241 (30%), Positives = 103/241 (42%), Gaps = 53/241 (21%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWAD------ILKEIRFLR 217
+E +++G G++ VY AR + IVAIKK+ K K A L+EI+ L+
Sbjct: 2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKI----KLGERKEAKDGINFTALREIKLLQ 57
Query: 218 QLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
+LKHPN I + LV E+ +I+ ++
Sbjct: 58 ELKHPNIIGLLDVFGHKSNINLVFEFMETDLEKVIK--------------DK-------- 95
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
L +I + LRGL YLHS +HRD+K N+L+ G +KLA
Sbjct: 96 -----------SIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLA 144
Query: 338 DFGSA-SIKCPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI--ELAERK 391
DFG A S P V T ++ APE L Y VD+WS+G CI EL R
Sbjct: 145 DFGLARSFGSPNRKMTHQVVTRWYRAPE--LLFGARHYGVGVDMWSVG--CIFAELLLRV 200
Query: 392 P 392
P
Sbjct: 201 P 201
Score = 95.7 bits (239), Expect = 1e-21
Identities = 50/138 (36%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
LL++LKHPN I + LV E+ +I+ L +I + LRG
Sbjct: 55 LLQELKHPNIIGLLDVFGHKSNINLVFEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRG 114
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSF---VGTPYWMAPEVI 122
L YLHS +HRD+K N+L+ G +KLADFG A S P V T ++ APE
Sbjct: 115 LEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPE-- 172
Query: 123 LAMDEGQYDGKVDVWSLG 140
L Y VD+WS+G
Sbjct: 173 LLFGARHYGVGVDMWSVG 190
Score = 56.4 bits (137), Expect = 2e-08
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LV E+ +I+ L +I + LRGL YLHS +HRD+K N+L+
Sbjct: 79 LVFEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASD 138
Query: 676 GTVKL 680
G +KL
Sbjct: 139 GVLKL 143
>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP
kinase kinase 5 (MKK5) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK5 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK5, also referred to as MEK5, is a
dual-specificity PK that phosphorylates its downstream
target, extracellular signal-regulated kinase 5 (ERK5),
on specific threonine and tyrosine residues. MKK5 is
activated by MEKK2 and MEKK3 in response to mitogenic
and stress stimuli. The ERK5 cascade promotes cell
proliferation, differentiation, neuronal survival, and
neuroprotection. This cascade plays an essential role in
heart development. Mice deficient in either ERK5 or MKK5
die around embryonic day 10 due to cardiovascular
defects including underdevelopment of the myocardium. In
addition, MKK5 is associated with metastasis and
unfavorable prognosis in prostate cancer.
Length = 279
Score = 116 bits (293), Expect = 5e-29
Identities = 90/329 (27%), Positives = 138/329 (41%), Gaps = 88/329 (26%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSY-----LGKQCAEKWADILKEIRFLRQLKHPNT 224
+GHG+ G VY A L++R I+A+K + L KQ I+ E+ L + P
Sbjct: 9 LGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQ-------IMSELEILYKCDSPYI 61
Query: 225 IEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
I + G + ++ + E+ G + D+
Sbjct: 62 IGFYGAFFVENRISICTEFMDGGSLDVY-------------------------------- 89
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS- 343
R + E + I V++GL YL SL +HRDVK N+L+ G VKL DFG ++
Sbjct: 90 -----RKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQ 144
Query: 344 -IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMSA 402
+ A ++VGT +MAPE I QY DVWSLGI+ +ELA + PY
Sbjct: 145 LVNSIAKTYVGTNAYMAPERISG---EQYGIHSDVWSLGISFMELALGRFPY-------- 193
Query: 403 LYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSD 462
P +Q + S++ + L I D P L +S+
Sbjct: 194 ---------PQIQKNQGSLM-----------------PLQLLQCIVDEDPPVLPVGQFSE 227
Query: 463 TFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
F HF++ C+ K P +RP+ L+ H +
Sbjct: 228 KFVHFITQCMRKQPKERPAPENLMDHPFI 256
Score = 82.6 bits (204), Expect = 3e-17
Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 9/138 (6%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
+L + P I + G + ++ + E+ G + D+ R + E + I V++G
Sbjct: 52 ILYKCDSPYIIGFYGAFFVENRISICTEFMDGGSLDVY----RKIPEHVLGRIAVAVVKG 107
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS--IKCPANSFVGTPYWMAPEVILA 124
L YL SL +HRDVK N+L+ G VKL DFG ++ + A ++VGT +MAPE I
Sbjct: 108 LTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISG 167
Query: 125 MDEGQYDGKVDVWSLGIT 142
QY DVWSLGI+
Sbjct: 168 ---EQYGIHSDVWSLGIS 182
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 619 EYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 678
E+ G + D+ R + E + I V++GL YL SL +HRDVK N+L+ G V
Sbjct: 79 EFMDGGSLDVY----RKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQV 134
Query: 679 KL 680
KL
Sbjct: 135 KL 136
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 3.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK3 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. In addition, MEKK3 is
involved in interleukin-1 receptor and Toll-like
receptor 4 signaling. It is also a specific regulator of
the proinflammatory cytokines IL-6 and GM-CSF in some
immune cells. MEKK3 also regulates calcineurin, which
plays a critical role in T cell activation, apoptosis,
skeletal myocyte differentiation, and cardiac
hypertrophy.
Length = 266
Score = 114 bits (286), Expect = 3e-28
Identities = 83/254 (32%), Positives = 120/254 (47%), Gaps = 49/254 (19%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSY--LGKQCAEKWADILKEIRFLRQLKHPNTIEY 227
+G G+FG VY + + +A K++ + + +++ + + EI+ L+ L+H ++Y
Sbjct: 10 LGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQY 69
Query: 228 RGCYLRDH---TAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
GC LRD T + MEY G G+ QLK +
Sbjct: 70 YGC-LRDRAEKTLTIFMEYMPG--------------------GSVKDQLKAYG------- 101
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-- 342
L E +L G++YLHS +HRD+K NIL G VKL DFG++
Sbjct: 102 ------ALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKR 155
Query: 343 -SIKCPAN----SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNM 397
C + S GTPYWM+PEVI EG Y K DVWSLG T +E+ KPP+
Sbjct: 156 LQTICMSGTGIRSVTGTPYWMSPEVISG--EG-YGRKADVWSLGCTVVEMLTEKPPWAEY 212
Query: 398 NAMSALYHIAQNDT 411
AM+A++ IA T
Sbjct: 213 EAMAAIFKIATQPT 226
Score = 94.8 bits (235), Expect = 1e-21
Identities = 66/175 (37%), Positives = 89/175 (50%), Gaps = 24/175 (13%)
Query: 7 LLRQLKHPNTIEYRGCYLRDH---TAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSG 62
LL+ L+H ++Y GC LRD T + MEY G S D ++ + L E
Sbjct: 57 LLKNLQHERIVQYYGC-LRDRAEKTLTIFMEYMPGGSVKDQLKAYG-ALTESVTRKYTRQ 114
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SIKCPAN----SFVGTPY 115
+L G++YLHS +HRD+K NIL G VKL DFG++ C + S GTPY
Sbjct: 115 ILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPY 174
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDPEKIFEDLREI 170
WM+PEVI EG Y K DVWSLG T + E+ ++ P +E + I
Sbjct: 175 WMSPEVISG--EG-YGRKADVWSLGCT--------VVEMLTEKPPWAEYEAMAAI 218
Score = 39.7 bits (92), Expect = 0.004
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 616 LVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
+ MEY G S D ++ + L E +L G++YLHS +HRD+K NIL
Sbjct: 83 IFMEYMPGGSVKDQLKAYG-ALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDS 141
Query: 675 TGTVKL 680
G VKL
Sbjct: 142 AGNVKL 147
>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 2 (CDKL2) and CDKL3 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL2 and CDKL3
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL2, also called
p56 KKIAMRE, is expressed in testis, kidney, lung, and
brain. It functions mainly in mature neurons and plays
an important role in learning and memory. Inactivation
of CDKL3, also called NKIAMRE (NKIATRE in rat), by
translocation is associated with mild mental
retardation. It has been reported that CDKL3 is lost in
leukemic cells having a chromosome arm 5q deletion, and
may contribute to the transformed phenotype.
Length = 286
Score = 114 bits (287), Expect = 5e-28
Identities = 87/336 (25%), Positives = 142/336 (42%), Gaps = 62/336 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+E+L +G GS+G V + + +IVAIKK + ++EIR L+QL+H N
Sbjct: 3 YENLGLVGEGSYGMVMKCKHKETGQIVAIKKF-LESEDDKMVKKIAMREIRMLKQLRHEN 61
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ + R +LV E F +H L
Sbjct: 62 LVNLIEVFRRKKRLYLVFE---------------------------------FVDHTVLD 88
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA- 342
+ E + L E + +LRG+ + HS IHRD+K NIL++++G VKL DFG A
Sbjct: 89 DLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFAR 148
Query: 343 SIKCPANS---FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNA 399
++ P +V T ++ APE+++ + +Y VD+W++G E+ +P + +
Sbjct: 149 TLAAPGEVYTDYVATRWYRAPELLVG--DTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSD 206
Query: 400 MSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSD 459
+ LYHI IK + + R F N + A + + + +
Sbjct: 207 IDQLYHI---------------IKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEI--EPLE 249
Query: 460 -----WSDTFAHFVSSCLAKNPADRPSSGRLLTHDL 490
S CL +P DRPSS +LL H+
Sbjct: 250 KRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHHEF 285
Score = 80.9 bits (200), Expect = 1e-16
Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 6/138 (4%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
+L+QL+H N + + R +LV E+ + D +E + L E + +LRG
Sbjct: 53 MLKQLRHENLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRG 112
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANS---FVGTPYWMAPEVI 122
+ + HS IHRD+K NIL++++G VKL DFG A ++ P +V T ++ APE++
Sbjct: 113 IEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELL 172
Query: 123 LAMDEGQYDGKVDVWSLG 140
+ + +Y VD+W++G
Sbjct: 173 VG--DTKYGRAVDIWAVG 188
Score = 47.0 bits (112), Expect = 2e-05
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LV E+ + D +E + L E + +LRG+ + HS IHRD+K NIL++++
Sbjct: 77 LVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQS 136
Query: 676 GTVKL 680
G VKL
Sbjct: 137 GVVKL 141
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 9. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the
Ran GTPase, and is implicated in microtubule
organization. Nek9 associates with FACT (FAcilitates
Chromatin Transcription) and modulates interphase
progression. It also interacts with Nek6, and Nek7,
during mitosis, resulting in their activation.
Length = 256
Score = 112 bits (283), Expect = 6e-28
Identities = 87/331 (26%), Positives = 138/331 (41%), Gaps = 89/331 (26%)
Query: 164 FEDLREIGHGSFG-AVYYARCLVSREIVAIKKMSYLGKQCAEKWA-DILKEIRFLRQLKH 221
+ +R +G G+FG A Y R +V K+++ + +EK D L EI L L+H
Sbjct: 2 YIPIRVLGKGAFGEATLYRRTEDDSLVV-WKEVNL--TRLSEKERRDALNEIVILSLLQH 58
Query: 222 PNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHF 280
PN I Y ++ D+T + MEY G + D I V Q+ + F E
Sbjct: 59 PNIIAYYNHFMDDNTLLIEMEYANGGTLYDKI-VR---------------QKGQLFEEEM 102
Query: 281 ALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
L+ I S V +Y+H G +HRD+K NI LT+ G +KL DFG
Sbjct: 103 VLWYLF------------QIVSAV----SYIHKAGILHRDIKTLNIFLTKAGLIKLGDFG 146
Query: 341 SASI----KCPANSFVGTPYWMAPEVILAMDEG-QYDGKVDVWSLGITCIELAERKPPYF 395
+ I A + VGTPY+M+PE + +G +Y+ K D+W+LG EL K +
Sbjct: 147 ISKILGSEYSMAETVVGTPYYMSPE----LCQGVKYNFKSDIWALGCVLYELLTLKRTFD 202
Query: 396 NMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCL 455
N ++ + I Q +++ + ++ S+
Sbjct: 203 ATNPLNLVVKIVQ--------GNYTPVVSVYSSELIS----------------------- 231
Query: 456 QSSDWSDTFAHFVSSCLAKNPADRPSSGRLL 486
V S L ++P RP++ +L
Sbjct: 232 -----------LVHSLLQQDPEKRPTADEVL 251
Score = 107 bits (268), Expect = 8e-26
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 19/146 (13%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGS--ASDIIEVHKRPLKEEEIAA----I 59
+L L+HPN I Y ++ D+T + MEY G I+ + +EE + I
Sbjct: 51 VILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQI 110
Query: 60 CSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI----KCPANSFVGTPY 115
S V +Y+H G +HRD+K NI LT+ G +KL DFG + I A + VGTPY
Sbjct: 111 VSAV----SYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPY 166
Query: 116 WMAPEVILAMDEG-QYDGKVDVWSLG 140
+M+PE + +G +Y+ K D+W+LG
Sbjct: 167 YMSPE----LCQGVKYNFKSDIWALG 188
Score = 49.4 bits (118), Expect = 2e-06
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 600 SYNNNNSNYSSLFSPQLVMEYCLGS--ASDIIEVHKRPLKEEEIAA----ICSGVLRGLN 653
+Y N+ + ++L + MEY G I+ + +EE + I S V +
Sbjct: 63 AYYNHFMDDNTLL---IEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAV----S 115
Query: 654 YLHSLGRIHRDVKAGNILLTETGTVKL 680
Y+H G +HRD+K NI LT+ G +KL
Sbjct: 116 YIHKAGILHRDIKTLNIFLTKAGLIKL 142
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including
inschemic heart disease, hypertension, vessel injury,
brain ischemia, Fanconi anemia, asthma, and pulmonary
edema, among others. ASK2 (also called MAPKKK6)
functions only in a heteromeric complex with ASK1, and
can activate ASK1 by direct phosphorylation. The
function of MAPKKK15 is still unknown.
Length = 268
Score = 113 bits (284), Expect = 7e-28
Identities = 75/248 (30%), Positives = 115/248 (46%), Gaps = 50/248 (20%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYRG 229
+G G++G VY AR L ++ +AIK++ + + + +EI LKH N ++Y G
Sbjct: 16 LGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQP---LHEEIALHSYLKHRNIVQYLG 72
Query: 230 CYLRDHTAWLVMEYCLG-SASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEVH 288
+ + ME G S S ++ W
Sbjct: 73 SDSENGFFKIFMEQVPGGSLSALLRSKW-------------------------------- 100
Query: 289 KRPLKEEE--IAAICSGVLRGLNYLHSLGRIHRDVKAGNILL-TETGTVKLADFGS---- 341
PLK+ E I +L GL YLH +HRD+K N+L+ T +G VK++DFG+
Sbjct: 101 -GPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRL 159
Query: 342 ASIKCPANSFVGTPYWMAPEVILAMDEGQ--YDGKVDVWSLGITCIELAERKPPYFNM-N 398
A I +F GT +MAPEVI D+G Y D+WSLG T +E+A KPP+ +
Sbjct: 160 AGINPCTETFTGTLQYMAPEVI---DKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGE 216
Query: 399 AMSALYHI 406
+A++ +
Sbjct: 217 PQAAMFKV 224
Score = 95.3 bits (237), Expect = 1e-21
Identities = 56/147 (38%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEE--IAAICSG 62
+L LKH N ++Y G + + ME G S S ++ PLK+ E I
Sbjct: 57 ALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQ 116
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILL-TETGTVKLADFGS----ASIKCPANSFVGTPYWM 117
+L GL YLH +HRD+K N+L+ T +G VK++DFG+ A I +F GT +M
Sbjct: 117 ILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYM 176
Query: 118 APEVILAMDEGQ--YDGKVDVWSLGIT 142
APEVI D+G Y D+WSLG T
Sbjct: 177 APEVI---DKGPRGYGAPADIWSLGCT 200
Score = 44.8 bits (106), Expect = 7e-05
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 584 HNRHHHHHPVTHLSQHSYNNNNSNYSSLFSPQLVMEYCLGSASDIIEVHKRPLKEEE--I 641
H+ H + V +L S N + +F Q+ GS S ++ PLK+ E I
Sbjct: 59 HSYLKHRNIVQYLGSDSENG----FFKIFMEQVPG----GSLSALLRSKWGPLKDNEQTI 110
Query: 642 AAICSGVLRGLNYLHSLGRIHRDVKAGNILL-TETGTVKL 680
+L GL YLH +HRD+K N+L+ T +G VK+
Sbjct: 111 IFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKI 150
>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine
Kinase, cAMP-dependent protein kinase. Serine/Threonine
Kinases (STKs), cAMP-dependent protein kinase (PKA)
subfamily, catalytic (c) subunit. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This subfamily is composed of the
cAMP-dependent proteins kinases, PKA and PRKX. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic (C) subunits
with a dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active C
subunits. PKA is present ubiquitously in cells and
interacts with many different downstream targets. It
plays a role in the regulation of diverse processes such
as growth, development, memory, metabolism, gene
expression, immunity, and lipolysis.
Length = 290
Score = 113 bits (286), Expect = 9e-28
Identities = 79/252 (31%), Positives = 114/252 (45%), Gaps = 56/252 (22%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILK---------EIR 214
FE ++ +G GSFG V R S + A+K +S K I+K E R
Sbjct: 3 FEFIKTLGTGSFGRVMLVRHKGSGKYYALKILS--------KA-KIVKLKQVEHVLNEKR 53
Query: 215 FLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLK 274
L+ ++HP + G + D +LVMEY G E+ F L++
Sbjct: 54 ILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGG-----EL------FS------HLRKSG 96
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
F E A F AA V+ L YLHSL ++RD+K N+LL G +
Sbjct: 97 RFPEPVARF-------------YAA---QVVLALEYLHSLDIVYRDLKPENLLLDSDGYI 140
Query: 335 KLADFGSAS-IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP 393
K+ DFG A +K + GTP ++APE+IL+ Y VD W+LGI E+ PP
Sbjct: 141 KITDFGFAKRVKGRTYTLCGTPEYLAPEIILSKG---YGKAVDWWALGILIYEMLAGYPP 197
Query: 394 YFNMNAMSALYH 405
+F+ N + +Y
Sbjct: 198 FFDDNPI-QIYE 208
Score = 86.4 bits (215), Expect = 2e-18
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 35/198 (17%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLK-EEEIAAI-CSGV 63
+L+ ++HP + G + D +LVMEY G ++ ++ + E +A + V
Sbjct: 53 RILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGG--ELFSHLRKSGRFPEPVARFYAAQV 110
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS-IKCPANSFVGTPYWMAPEVI 122
+ L YLHSL ++RD+K N+LL G +K+ DFG A +K + GTP ++APE+I
Sbjct: 111 VLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEII 170
Query: 123 LAMDEGQYDGKVDVWSLGITPGSLKDPEIAEL------FDKEDPEKIFEDLREIGHGSFG 176
L+ Y VD W+LGI I E+ F ++P +I+E + E G
Sbjct: 171 LSKG---YGKAVDWWALGIL--------IYEMLAGYPPFFDDNPIQIYEKILE------G 213
Query: 177 AVYY-------ARCLVSR 187
V + A+ L+
Sbjct: 214 KVRFPSFFSPDAKDLIRN 231
Score = 40.2 bits (95), Expect = 0.002
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
V+ L YLHSL ++RD+K N+LL G +K+
Sbjct: 110 VVLALEYLHSLDIVYRDLKPENLLLDSDGYIKI 142
>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase
kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain,
functionally uncharacterized subgroup 1. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MEKK3-like subfamily is
composed of MEKK3, MEKK2, and related proteins, all
containing an N-terminal PB1 domain, which mediates
oligomerization, and a C-terminal catalytic domain.
MEKK2 and MEKK3 are mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks),
proteins that phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK2 and MEKK3 activate MEK5
(also called MKK5), which activates extracellular
signal-regulated kinase 5 (ERK5). The ERK5 cascade plays
roles in promoting cell proliferation, differentiation,
neuronal survival, and neuroprotection. MEKK3 plays an
essential role in embryonic angiogenesis and early heart
development. MEKK2 and MEKK3 can also activate the
MAPKs, c-Jun N-terminal kinase (JNK) and p38, through
their respective MAPKKs.
Length = 264
Score = 112 bits (280), Expect = 2e-27
Identities = 81/254 (31%), Positives = 124/254 (48%), Gaps = 49/254 (19%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSY-LGKQCAEKWADILK-EIRFLRQLKHPNTIEY 227
+G G+FG VY + +A+K++ + Q K + L+ EI+ L+ L+H ++Y
Sbjct: 10 LGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQY 69
Query: 228 RGCYLRDHTA---WLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
GC LRD + +EY G + + ++L+ TE+
Sbjct: 70 YGC-LRDPEEKKLSIFVEYMPGGS-----------------IKDQLKAYGALTEN----- 106
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-- 342
V +R ++ +L+G++YLHS +HRD+K NIL G VKL DFG++
Sbjct: 107 --VTRRYTRQ---------ILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKR 155
Query: 343 -SIKCPA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNM 397
C + S GTPYWM+PEVI EG Y K DVWS+ T +E+ KPP+
Sbjct: 156 IQTICMSGTGIKSVTGTPYWMSPEVISG--EG-YGRKADVWSVACTVVEMLTEKPPWAEY 212
Query: 398 NAMSALYHIAQNDT 411
AM+A++ IA T
Sbjct: 213 EAMAAIFKIATQPT 226
Score = 88.9 bits (220), Expect = 1e-19
Identities = 62/175 (35%), Positives = 88/175 (50%), Gaps = 24/175 (13%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTA---WLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSG 62
LL+ L+H ++Y GC LRD + +EY G S D ++ + L E
Sbjct: 57 LLKNLRHDRIVQYYGC-LRDPEEKKLSIFVEYMPGGSIKDQLKAYG-ALTENVTRRYTRQ 114
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SIKCPA----NSFVGTPY 115
+L+G++YLHS +HRD+K NIL G VKL DFG++ C + S GTPY
Sbjct: 115 ILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPY 174
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDPEKIFEDLREI 170
WM+PEVI EG Y K DVWS+ T + E+ ++ P +E + I
Sbjct: 175 WMSPEVISG--EG-YGRKADVWSVACT--------VVEMLTEKPPWAEYEAMAAI 218
Score = 39.6 bits (92), Expect = 0.004
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+L+G++YLHS +HRD+K NIL G VKL
Sbjct: 115 ILQGVSYLHSNMIVHRDIKGANILRDSAGNVKL 147
>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
PBS2-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Polymyxin B
resistance protein 2 (PBS2) from Saccharomyces
cerevisiae, Wis1 from Schizosaccharomyces pombe, and
related proteins. PBS2 and Wis1 are components of
stress-activated MAPK cascades in budding and fission
yeast, respectively. PBS2 is the specific activator of
the MAPK Hog1, which plays a central role in the
response of budding yeast to stress including exposure
to arsenite and hyperosmotic environments. Wis1
phosphorylates and activates the MAPK Sty1 (also called
Spc1 or Phh1), which stimulates a transcriptional
response to a wide range of cellular insults through the
bZip transcription factors Atf1, Pcr1, and Pap1.
Length = 286
Score = 112 bits (282), Expect = 2e-27
Identities = 84/341 (24%), Positives = 135/341 (39%), Gaps = 77/341 (22%)
Query: 165 EDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
E L E+G G++G+VY + +A+K++ + K+ I+ E+ L + P
Sbjct: 4 EVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDE--SKFNQIIMELDILHKAVSPYI 61
Query: 225 IEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
+++ G + + ++ MEY + D L+
Sbjct: 62 VDFYGAFFIEGAVYMCMEYMDAGSLD------------------------------KLYA 91
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYL-HSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
V + E+ + I V++GL +L IHRDVK N+L+ G VKL DFG +
Sbjct: 92 GGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSG 151
Query: 344 --IKCPANSFVGTPYWMAPEVIL---AMDEGQYDGKVDVWSLGITCIELAERKPPYFNMN 398
+ A + +G +MAPE I Y + DVWSLG++ +E+A + PY
Sbjct: 152 NLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPY---- 207
Query: 399 AMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSS 458
PP N + L I D P L S
Sbjct: 208 ----------------------------------PPETYANIFAQLSAIVDGDPPTL-PS 232
Query: 459 DWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSV 499
+SD FV+ CL K P RP+ +LL H + + ++ V
Sbjct: 233 GYSDDAQDFVAKCLNKIPNRRPTYAQLLEHPWLVKYKNADV 273
Score = 73.0 bits (179), Expect = 5e-14
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 23/182 (12%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDII---EVHKRPLKEEEIAAICSGV 63
+L + P +++ G + + ++ MEY + D + V + E+ + I V
Sbjct: 52 ILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAV 111
Query: 64 LRGLNYL-HSLGRIHRDVKAGNILLTETGTVKLADFGSAS--IKCPANSFVGTPYWMAPE 120
++GL +L IHRDVK N+L+ G VKL DFG + + A + +G +MAPE
Sbjct: 112 VKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPE 171
Query: 121 VIL---AMDEGQYDGKVDVWSLGITPGSLKDPEIAEL------FDKEDPEKIFEDLREIG 171
I Y + DVWSLG++ I E+ + E IF L I
Sbjct: 172 RIKSGGPNQNPTYTVQSDVWSLGLS--------ILEMALGRYPYPPETYANIFAQLSAIV 223
Query: 172 HG 173
G
Sbjct: 224 DG 225
Score = 38.3 bits (89), Expect = 0.012
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 618 MEYCLGSASDII---EVHKRPLKEEEIAAICSGVLRGLNYL-HSLGRIHRDVKAGNILLT 673
MEY + D + V + E+ + I V++GL +L IHRDVK N+L+
Sbjct: 78 MEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVN 137
Query: 674 ETGTVKL 680
G VKL
Sbjct: 138 GNGQVKL 144
>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK
kinase (MEK) subfamily, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine or tyrosine residues on protein
substrates. The MEK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1
and MEK2 are dual-specificity PKs that phosphorylate and
activate the downstream targets, ERK(extracellular
signal-regulated kinase) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1/2, and finally to ERK1/2. The ERK
cascade plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. This cascade has also been
implicated in synaptic plasticity, migration,
morphological determination, and stress response
immunological reactions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1/2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 308
Score = 112 bits (282), Expect = 3e-27
Identities = 96/343 (27%), Positives = 148/343 (43%), Gaps = 54/343 (15%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
FE L E+G G+ G V S I+A +K+ +L + A + I++E++ L + P
Sbjct: 3 FEKLGELGAGNGGVVTKVLHRPSGLIMA-RKLIHLEIKPAIR-NQIIRELKVLHECNSPY 60
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ + G + D + ME+ G + D + LK
Sbjct: 61 IVGFYGAFYSDGEISICMEHMDGGSLDQV--------------------LK--------- 91
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYL---HSLGRIHRDVKAGNILLTETGTVKLADFG 340
+ + P E + I VLRGL YL H + +HRDVK NIL+ G +KL DFG
Sbjct: 92 --KAGRIP--ENILGKISIAVLRGLTYLREKHKI--MHRDVKPSNILVNSRGEIKLCDFG 145
Query: 341 SAS--IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA-ERKP-PYFN 396
+ I ANSFVGT +M+PE + Y + D+WSLG++ +E+A R P P +
Sbjct: 146 VSGQLIDSMANSFVGTRSYMSPE---RLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPD 202
Query: 397 MNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQ 456
+ A++ ++ ++ + + +P M L +I P L
Sbjct: 203 AKELEAMFGRPVSE---GEAKESHRPVSGHPPDSPRP----MAIFELLDYIVNEPPPKLP 255
Query: 457 SSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSV 499
S +SD F FV CL KNP +R L H + R V
Sbjct: 256 SGAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKRAELEEV 298
Score = 84.4 bits (209), Expect = 1e-17
Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 30/178 (16%)
Query: 7 LLRQLK--H----PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAIC 60
++R+LK H P + + G + D + ME+ G + D + + E + I
Sbjct: 46 IIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPENILGKIS 105
Query: 61 SGVLRGLNYL---HSLGRIHRDVKAGNILLTETGTVKLADFGSAS--IKCPANSFVGTPY 115
VLRGL YL H + +HRDVK NIL+ G +KL DFG + I ANSFVGT
Sbjct: 106 IAVLRGLTYLREKHKI--MHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRS 163
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLG------------ITPGSLKDPEIAELFDKEDPE 161
+M+PE + Y + D+WSLG I P K E+ +F + E
Sbjct: 164 YMSPE---RLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAK--ELEAMFGRPVSE 216
Score = 46.7 bits (111), Expect = 2e-05
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 618 MEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYL---HSLGRIHRDVKAGNILLTE 674
ME+ G + D + + E + I VLRGL YL H + +HRDVK NIL+
Sbjct: 78 MEHMDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKI--MHRDVKPSNILVNS 135
Query: 675 TGTVKL 680
G +KL
Sbjct: 136 RGEIKL 141
>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 9.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK9 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK9
together with a cyclin partner (cyclin T1, T2a, T2b, or
K) is the main component of distinct positive
transcription elongation factors (P-TEFb), which
function as Ser2 C-terminal domain kinases of RNA
polymerase II. P-TEFb participates in multiple steps of
gene expression including transcription elongation, mRNA
synthesis, processing, export, and translation. It also
plays a role in mediating cytokine induced transcription
networks such as IL6-induced STAT3 signaling. In
addition, the CDK9/cyclin T2a complex promotes muscle
differentiation and enhances the function of some
myogenic regulatory factors.
Length = 310
Score = 111 bits (280), Expect = 6e-27
Identities = 79/265 (29%), Positives = 114/265 (43%), Gaps = 74/265 (27%)
Query: 155 FDKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWA---DILK 211
F D +E L +IG G+FG V+ AR +++IVA+KK+ EK L+
Sbjct: 5 FPFCDEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMEN----EKEGFPITALR 60
Query: 212 EIRFLRQLKHPNTIE--------------YRGCYLRDHTAWLVMEYCLGSASDIIEVHWI 257
EI+ L+ LKH N + Y+G + +LV E+C
Sbjct: 61 EIKILQLLKHENVVNLIEICRTKATPYNRYKG------SFYLVFEFC------------- 101
Query: 258 EREFHVEGMGNRLQQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRI 317
E + G+ L N V EI + +L GL Y+H +
Sbjct: 102 --EHDLAGL---------------LSNKNVK---FTLSEIKKVMKMLLNGLYYIHRNKIL 141
Query: 318 HRDVKAGNILLTETGTVKLADFG-----SASIKCPANSF---VGTPYWMAPEVILAMDEG 369
HRD+KA NIL+T+ G +KLADFG S S N + V T ++ PE++L E
Sbjct: 142 HRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLG--ER 199
Query: 370 QYDGKVDVWSLGITCI--ELAERKP 392
Y +D+W G CI E+ R P
Sbjct: 200 DYGPPIDMWGAG--CIMAEMWTRSP 222
Score = 83.2 bits (206), Expect = 3e-17
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 30/156 (19%)
Query: 7 LLRQLKHPNTIE--------------YRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLK 52
+L+ LKH N + Y+G + +LV E+C + ++
Sbjct: 64 ILQLLKHENVVNLIEICRTKATPYNRYKG------SFYLVFEFCEHDLAGLLSNKNVKFT 117
Query: 53 EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-----SASIKCPA 107
EI + +L GL Y+H +HRD+KA NIL+T+ G +KLADFG S S
Sbjct: 118 LSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKP 177
Query: 108 NSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
N + V T ++ PE++L E Y +D+W G
Sbjct: 178 NRYTNRVVTLWYRPPELLLG--ERDYGPPIDMWGAG 211
Score = 54.3 bits (131), Expect = 8e-08
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 590 HHPVTHLSQ--HSYNNNNSNYSSLFSPQLVMEYCLGSASDIIEVHKRPLKEEEIAAICSG 647
H V +L + + + Y F LV E+C + ++ EI +
Sbjct: 70 HENVVNLIEICRTKATPYNRYKGSF--YLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKM 127
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+L GL Y+H +HRD+KA NIL+T+ G +KL
Sbjct: 128 LLNGLYYIHRNKILHRDMKAANILITKDGILKL 160
>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine
Kinases, Fungal Mitogen-Activated Protein Kinases Sty1
and Hog1. Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Sty1/Hog1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of the MAPKs Sty1
from Schizosaccharomyces pombe, Hog1 from Saccharomyces
cerevisiae, and similar proteins. MAPKs are important
mediators of cellular responses to extracellular
signals. Sty1 and Hog1 are stress-activated MAPKs that
partipate in transcriptional regulation in response to
stress. Sty1 is activated in response to oxidative
stress, osmotic stress, and UV radiation. Sty1 is
regulated by the MAP2K Wis1, which is activated by the
MAP3Ks Wis4 and Win1, which receive signals of the
stress condition from membrane-spanning histidine
kinases Mak1-3. Activated Sty1 stabilizes the Atf1
transcription factor and induces transcription of
Atf1-dependent genes of the core environmetal stress
response (CESR). Hog1 is the key element in the high
osmolarity glycerol (HOG) pathway and is activated upon
hyperosmotic stress. Activated Hog1 accumulates in the
nucleus and regulates stress-induced transcription. The
HOG pathway is mediated by two transmembrane
osmosensors, Sln1 and Sho1.
Length = 328
Score = 112 bits (281), Expect = 6e-27
Identities = 84/272 (30%), Positives = 126/272 (46%), Gaps = 54/272 (19%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKM------SYLGKQCAEKWADILKEIRFLR 217
+ DL+ +G G+FG V AR ++ + VAIKK+ L K+ +E++ L+
Sbjct: 12 YVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKR-------TYRELKLLK 64
Query: 218 QLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
L+H N I S SDI + F E +G L +L
Sbjct: 65 HLRHENII---------------------SLSDIFISPLEDIYFVTELLGTDLHRL---- 99
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
+ RPL+++ I +LRGL Y+HS G +HRD+K NIL+ E +K+
Sbjct: 100 ---------LTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKIC 150
Query: 338 DFGSASIKCP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
DFG A I+ P +V T Y+ APE++L +YD +VD+WS G E+ E KP +
Sbjct: 151 DFGLARIQDPQMTGYVSTRYYRAPEIMLTWQ--KYDVEVDIWSAGCIFAEMLEGKPLFPG 208
Query: 397 MNAMSALYHIAQNDTPCLQSSDWSVIKTISST 428
+ ++ I T L + VI TI S
Sbjct: 209 KDHVNQFSII----TDLLGTPPDDVINTICSE 236
Score = 89.1 bits (221), Expect = 3e-19
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHT-AWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
LL+ L+H N I ++ + V E ++ RPL+++ I +LR
Sbjct: 62 LLKHLRHENIISLSDIFISPLEDIYFVTELLGTDLHRLLT--SRPLEKQFIQYFLYQILR 119
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCP-ANSFVGTPYWMAPEVILA 124
GL Y+HS G +HRD+K NIL+ E +K+ DFG A I+ P +V T Y+ APE++L
Sbjct: 120 GLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLT 179
Query: 125 MDEGQYDGKVDVWSLG 140
+YD +VD+WS G
Sbjct: 180 WQ--KYDVEVDIWSAG 193
Score = 48.3 bits (115), Expect = 9e-06
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 634 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
RPL+++ I +LRGL Y+HS G +HRD+K NIL+ E +K+
Sbjct: 103 RPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKI 149
>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent
protein Kinase 4 and 6-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) and CDK6-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK4/6-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK4 and CDK6
partner with D-type cyclins to regulate the early G1
phase of the cell cycle. They are the first kinase
activated by mitogenic signals to release cells from the
G0 arrested state. CDK4 and CDK6 are both expressed
ubiquitously, associate with all three D cyclins (D1, D2
and D3), and phosphorylate the retinoblastoma (pRb)
protein. They are also regulated by the INK4 family of
inhibitors which associate with either the CDK alone or
the CDK/cyclin complex. CDK4 and CDK6 show differences
in subcellular localization, sensitivity to some
inhibitors, timing in activation, tumor selectivity, and
possibly substrate profiles. Although CDK4 and CDK6 seem
to show some redundancy, they also have discrete,
nonoverlapping functions. CDK6 plays an important role
in cell differentiation.
Length = 287
Score = 109 bits (274), Expect = 3e-26
Identities = 82/243 (33%), Positives = 113/243 (46%), Gaps = 53/243 (21%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSY-LGKQCAEKWADILKEIRFLRQLK-- 220
+E+L EIG G++G VY AR L + VA+KK+ L ++ L+EI L+QL+
Sbjct: 1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIP--LSTLREIALLKQLESF 58
Query: 221 -HPNTIEYR----GCYL-RDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLK 274
HPN + G R+ LV E HV+ Q L
Sbjct: 59 EHPNIVRLLDVCHGPRTDRELKLTLVFE-------------------HVD------QDLA 93
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
+ K L E I + +LRG+++LHS +HRD+K NIL+T G V
Sbjct: 94 TYLSK-------CPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQV 146
Query: 335 KLADFGSASIKC---PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI--ELAE 389
K+ADFG A I S V T ++ APEV+L Y VD+WS+G CI EL
Sbjct: 147 KIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQS---SYATPVDMWSVG--CIFAELFR 201
Query: 390 RKP 392
R+P
Sbjct: 202 RRP 204
Score = 89.2 bits (222), Expect = 2e-19
Identities = 61/183 (33%), Positives = 88/183 (48%), Gaps = 35/183 (19%)
Query: 6 SLLRQLK---HPNTIEYR----GCYL-RDHTAWLVMEYCLGSASDIIEVHKRP-LKEEEI 56
+LL+QL+ HPN + G R+ LV E+ + + +P L E I
Sbjct: 50 ALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETI 109
Query: 57 AAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKC---PANSFVGT 113
+ +LRG+++LHS +HRD+K NIL+T G VK+ADFG A I S V T
Sbjct: 110 KDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMALTSVVVT 169
Query: 114 PYWMAPEVILAMDEGQYDGKVDVWSLG-ITPGSLKDPEIAELF----------DKEDPEK 162
++ APEV+L Y VD+WS+G I AELF + + +K
Sbjct: 170 LWYRAPEVLLQS---SYATPVDMWSVGCI---------FAELFRRRPLFRGTSEADQLDK 217
Query: 163 IFE 165
IF+
Sbjct: 218 IFD 220
Score = 49.6 bits (119), Expect = 3e-06
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 588 HHHHP-VTHLSQHSYNNNNSNYSSLFSPQLVMEYCLGSASDIIEVHKRP-LKEEEIAAIC 645
HP + L + L LV E+ + + +P L E I +
Sbjct: 57 SFEHPNIVRLLDVCHGPRTDRELKLT---LVFEHVDQDLATYLSKCPKPGLPPETIKDLM 113
Query: 646 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+LRG+++LHS +HRD+K NIL+T G VK+
Sbjct: 114 RQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKI 148
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1
(BMK1) or MAPK7, has a unique C-terminal extension,
making it approximately twice as big as other MAPKs.
This extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation by
the MAP2K MEK5, which in turn is regulated by the MAP3Ks
MEKK2 and MEKK3. Activated ERK5 phosphorylates its
targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is essential
for cardiovascular development and plays an important
role in angiogenesis. It is also critical for neural
differentiation and survival. The ERK5 pathway has been
implicated in the pathogenesis of many diseases
including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 110 bits (276), Expect = 4e-26
Identities = 96/371 (25%), Positives = 152/371 (40%), Gaps = 96/371 (25%)
Query: 155 FDKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSY------LGKQCAEKWAD 208
FD K + IG G++G V A S + VAIKK+ + L K+
Sbjct: 1 FDVGSRYKP---IENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKR------- 50
Query: 209 ILKEIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGN 268
L+E++ LR KH N I R + +D +V+ + ++ M +
Sbjct: 51 TLRELKILRHFKHDNIIAIR-------------DILRPPGADFKDVYVV-----MDLMES 92
Query: 269 RLQQLKCFTEHFALFNFEVH-KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 327
L + +H +PL EE I +LRGL Y+HS IHRD+K N+L
Sbjct: 93 DLHHI-------------IHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLL 139
Query: 328 LTETGTVKLADFGSASIKCPANS----------FVGTPYWMAPEVILAMDEGQYDGKVDV 377
+ E +++ DFG A + ++S +V T ++ APE++L++ E Y +D+
Sbjct: 140 VNEDCELRIGDFGMA--RGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPE--YTTAIDM 195
Query: 378 WSLGITCIELAE---RKPPYFNMNAMSALYHIAQN-DTPCLQSSDWSVIKTISSTAERKP 433
WS+G CI AE R+ + N + L I +P + V+ I S RK
Sbjct: 196 WSVG--CI-FAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEE-----VLNRIGSDRVRK- 246
Query: 434 PYFNMNAMSALYHIAQNDTPCLQSSDWSDTF--AH-----FVSSCLAKNPADRPSSGRLL 486
Y + P Q WS F A +S L +P +R + + L
Sbjct: 247 -YI-------------QNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQAL 292
Query: 487 THDLVTRPRSP 497
H + + P
Sbjct: 293 QHPFLAQYHDP 303
Score = 88.2 bits (219), Expect = 8e-19
Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 25/151 (16%)
Query: 7 LLRQLKHPNTIEYR------GCYLRDHTAWLVMEYCLGSASDIIEVH-KRPLKEEEIAAI 59
+LR KH N I R G +D ++VM+ II H +PL EE I
Sbjct: 57 ILRHFKHDNIIAIRDILRPPGADFKD--VYVVMDLMESDLHHII--HSDQPLTEEHIRYF 112
Query: 60 CSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANS---------- 109
+LRGL Y+HS IHRD+K N+L+ E +++ DFG A + ++S
Sbjct: 113 LYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMA--RGLSSSPTEHKYFMTE 170
Query: 110 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
+V T ++ APE++L++ E Y +D+WS+G
Sbjct: 171 YVATRWYRAPELLLSLPE--YTTAIDMWSVG 199
Score = 48.5 bits (116), Expect = 7e-06
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 633 KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+PL EE I +LRGL Y+HS IHRD+K N+L+ E +++
Sbjct: 101 DQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRI 148
>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 2.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2
(MEKK2) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK2 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK2 also activates ERK1/2, c-Jun N-terminal kinase
(JNK) and p38 through their respective MAPKKs MEK1/2,
JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays
roles in T cell receptor signaling, immune synapse
formation, cytokine gene expression, as well as in EGF
and FGF receptor signaling.
Length = 265
Score = 108 bits (270), Expect = 4e-26
Identities = 80/254 (31%), Positives = 118/254 (46%), Gaps = 49/254 (19%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSY--LGKQCAEKWADILKEIRFLRQLKHPNTIEY 227
+G G+FG VY + +A+K++ + + +++ + EI+ L+ L H ++Y
Sbjct: 10 LGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQY 69
Query: 228 RGCYLRD---HTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
GC LRD T + ME+ G G+ QLK +
Sbjct: 70 YGC-LRDPMERTLSIFMEHMPG--------------------GSIKDQLKSYG------- 101
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-- 342
L E +L G++YLHS +HRD+K NIL G VKL DFG++
Sbjct: 102 ------ALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKR 155
Query: 343 -SIKCPAN----SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNM 397
C + S GTPYWM+PEVI EG Y K D+WS+G T +E+ KPP+
Sbjct: 156 LQTICLSGTGMKSVTGTPYWMSPEVISG--EG-YGRKADIWSVGCTVVEMLTEKPPWAEF 212
Query: 398 NAMSALYHIAQNDT 411
AM+A++ IA T
Sbjct: 213 EAMAAIFKIATQPT 226
Score = 88.6 bits (219), Expect = 2e-19
Identities = 64/175 (36%), Positives = 88/175 (50%), Gaps = 24/175 (13%)
Query: 7 LLRQLKHPNTIEYRGCYLRD---HTAWLVMEYCL-GSASDIIEVHKRPLKEEEIAAICSG 62
LL+ L H ++Y GC LRD T + ME+ GS D ++ + L E
Sbjct: 57 LLKNLLHERIVQYYGC-LRDPMERTLSIFMEHMPGGSIKDQLKSYG-ALTENVTRKYTRQ 114
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SIKCPAN----SFVGTPY 115
+L G++YLHS +HRD+K NIL G VKL DFG++ C + S GTPY
Sbjct: 115 ILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPY 174
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDPEKIFEDLREI 170
WM+PEVI EG Y K D+WS+G T + E+ ++ P FE + I
Sbjct: 175 WMSPEVISG--EG-YGRKADIWSVGCT--------VVEMLTEKPPWAEFEAMAAI 218
Score = 39.6 bits (92), Expect = 0.004
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+L G++YLHS +HRD+K NIL G VKL
Sbjct: 115 ILEGVSYLHSNMIVHRDIKGANILRDSVGNVKL 147
>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1
(MEKK1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK1 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK1 activates the extracellular
signal-regulated kinase 1/2 (ERK1/2) and c-Jun
N-terminal kinase (JNK) pathways by activating their
respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively.
MEKK1 is important in regulating cell survival and
apoptosis. MEKK1 also plays a role in cell migration,
tissue maintenance and homeostasis, and wound healing.
Length = 268
Score = 107 bits (269), Expect = 7e-26
Identities = 87/336 (25%), Positives = 129/336 (38%), Gaps = 88/336 (26%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEK---WADILKEIRFLRQLKHPNTIE 226
+G G+F + Y AR + + ++A+K+++Y+ +E+ + KEIR + +L HP+ I
Sbjct: 8 LGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIR 67
Query: 227 YRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFE 286
G D L +E+ G + + G
Sbjct: 68 MLGATCEDSHFNLFVEWMAGGS--------VSHLLSKYG--------------------- 98
Query: 287 VHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGT-VKLADFGSASIK 345
KE I +LRGL+YLH IHRDVK N+L+ TG +++ADFG+A +
Sbjct: 99 ----AFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAA-AR 153
Query: 346 CPAN---------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
A +GT +MAPEV+ QY DVWS+G IE+A KPP+ N
Sbjct: 154 LAAKGTGAGEFQGQLLGTIAFMAPEVLRGE---QYGRSCDVWSVGCVIIEMATAKPPW-N 209
Query: 397 MNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQ 456
S N ++ ++ IA T
Sbjct: 210 AEKHS-------------------------------------NHLALIFKIASATTAPSI 232
Query: 457 SSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVT 492
S CL P DRP S LL H +
Sbjct: 233 PEHLSPGLRDVTLRCLELQPEDRPPSRELLKHPVFR 268
Score = 81.4 bits (201), Expect = 5e-17
Identities = 50/145 (34%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
L+ +L HP+ I G D L +E+ G + + KE I +LR
Sbjct: 55 RLMARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLR 114
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGT-VKLADFGSASIKCPAN---------SFVGTPY 115
GL+YLH IHRDVK N+L+ TG +++ADFG+A + A +GT
Sbjct: 115 GLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAA-ARLAAKGTGAGEFQGQLLGTIA 173
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLG 140
+MAPEV+ QY DVWS+G
Sbjct: 174 FMAPEVLRGE---QYGRSCDVWSVG 195
Score = 44.9 bits (106), Expect = 8e-05
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 635 PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 676
KE I +LRGL+YLH IHRDVK N+L+ TG
Sbjct: 99 AFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTG 140
>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related
kinase adapter protein alpha. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) alpha
subfamily, pseudokinase domain. The STRAD alpha
subfamily is part of a larger superfamily that includes
the catalytic domains of serine/threonine kinases
(STKs), protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The pseudokinase domain shows
similarity to protein kinases but lacks crucial residues
for catalytic activity. STRAD forms a complex with the
scaffolding protein MO25, and the STK, LKB1, resulting
in the activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. The structure of STRAD-alpha is available and
shows that this protein binds ATP, has an ordered
activation loop, and adopts a closed conformation
typical of fully active protein kinases. It does not
possess activity due to nonconservative substitutions of
essential catalytic residues. ATP binding enhances the
affinity of STRAD for MO25. The conformation of
STRAD-alpha, stabilized through ATP and MO25, may be
needed to activate LKB1. A mutation which results in a
truncation of a C-terminal part of the human STRAD-alpha
pseudokinase domain and disrupts its association with
LKB1, leads to PMSE (polyhydramnios, megalencephaly,
symptomatic epilepsy) syndrome. Several splice variants
of STRAD-alpha exist which exhibit different effects on
the localization and activation of LKB1.
Length = 327
Score = 108 bits (272), Expect = 9e-26
Identities = 96/354 (27%), Positives = 145/354 (40%), Gaps = 77/354 (21%)
Query: 165 EDLREIGHG--SFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILK-EIRFLRQLKH 221
E L IG G V AR + E V +++++ + C + L+ E+ + H
Sbjct: 1 ELLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINL--EACTNEMVTFLQGELHVSKLFNH 58
Query: 222 PNTIEYRGCYLRDHTAWLVMEY-CLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHF 280
PN + YR ++ D+ W+V + GSA D+I H+++ GM
Sbjct: 59 PNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMD------GM-------------- 98
Query: 281 ALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA--- 337
E IA I GVL+ L+Y+H +G +HR VKA +IL++ G V L+
Sbjct: 99 ------------SELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLR 146
Query: 338 ----------------DFGSASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLG 381
DF S+K W++PEV+ +G YD K D++S+G
Sbjct: 147 SNLSMINHGQRLRVVHDFPKYSVKVLP--------WLSPEVLQQNLQG-YDAKSDIYSVG 197
Query: 382 ITCIELAERKPPYFNMNAMSALYHIAQNDTPCLQSS-----DWSVIKTISSTAERKPPYF 436
IT ELA P+ +M A L PCL + + +K S A
Sbjct: 198 ITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGAN----SG 253
Query: 437 NMNAMSALYHIAQNDTPCLQ--SSDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
+ + N + +S F HFV CL +NP RPS+ LL H
Sbjct: 254 LGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNH 307
Score = 82.7 bits (204), Expect = 5e-17
Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 30/155 (19%)
Query: 13 HPNTIEYRGCYLRDHTAWLVMEY-CLGSASDIIEVH-KRPLKEEEIAAICSGVLRGLNYL 70
HPN + YR ++ D+ W+V + GSA D+I H + E IA I GVL+ L+Y+
Sbjct: 58 HPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYI 117
Query: 71 HSLGRIHRDVKAGNILLTETGTVKLA-------------------DFGSASIKCPANSFV 111
H +G +HR VKA +IL++ G V L+ DF S+K
Sbjct: 118 HHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLP---- 173
Query: 112 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITPGSL 146
W++PEV+ +G YD K D++S+GIT L
Sbjct: 174 ----WLSPEVLQQNLQG-YDAKSDIYSVGITACEL 203
Score = 52.3 bits (125), Expect = 4e-07
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 618 MEYCLGSASDIIEVH-KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 676
M Y GSA D+I H + E IA I GVL+ L+Y+H +G +HR VKA +IL++ G
Sbjct: 81 MAY--GSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDG 138
Query: 677 TVKL 680
V L
Sbjct: 139 KVYL 142
>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 5. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek5 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. The specific function of Nek5
is unknown.
Length = 257
Score = 106 bits (265), Expect = 1e-25
Identities = 72/250 (28%), Positives = 116/250 (46%), Gaps = 40/250 (16%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+E +++IG GSFG +Y A+ E IK++ EK A KE+ L ++KHPN
Sbjct: 2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEAS-KKEVILLAKMKHPN 60
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ + + + ++VMEYC G G+ ++++ + LF
Sbjct: 61 IVTFFASFQENGRLFIVMEYCDG--------------------GDLMKRIN--RQRGVLF 98
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV-KLADFGSA 342
+ E++I + + GL ++H +HRD+K+ NI L++ G V KL DFG A
Sbjct: 99 S---------EDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIA 149
Query: 343 SIKCPANSF----VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMN 398
+ VGTPY+++PE+ Y+ K D+WSLG EL K P+ N
Sbjct: 150 RQLNDSMELAYTCVGTPYYLSPEIC---QNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN 206
Query: 399 AMSALYHIAQ 408
+ I Q
Sbjct: 207 LHQLVLKICQ 216
Score = 83.5 bits (206), Expect = 1e-17
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 14/143 (9%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRP----LKEEEIAAICSG 62
LL ++KHPN + + + + ++VMEYC G D+++ R E++I +
Sbjct: 52 LLAKMKHPNIVTFFASFQENGRLFIVMEYCDGG--DLMKRINRQRGVLFSEDQILSWFVQ 109
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTV-KLADFGSASIKCPANSF----VGTPYWM 117
+ GL ++H +HRD+K+ NI L++ G V KL DFG A + VGTPY++
Sbjct: 110 ISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYL 169
Query: 118 APEVILAMDEGQYDGKVDVWSLG 140
+PE+ Y+ K D+WSLG
Sbjct: 170 SPEIC---QNRPYNNKTDIWSLG 189
Score = 38.8 bits (90), Expect = 0.007
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 616 LVMEYCLGSASDIIEVHKRP----LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
+VMEYC G D+++ R E++I + + GL ++H +HRD+K+ NI
Sbjct: 76 IVMEYCDGG--DLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIF 133
Query: 672 LTETGTV 678
L++ G V
Sbjct: 134 LSKNGMV 140
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 3. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present
in the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 105 bits (264), Expect = 2e-25
Identities = 74/235 (31%), Positives = 113/235 (48%), Gaps = 40/235 (17%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+ LR +G GSFG + + S + A+K++ + + D KE L ++KHPN
Sbjct: 2 YNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRL--PKSSSAVEDSRKEAVLLAKMKHPN 59
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ ++ + D ++VMEYC G D+++ +LQ+ K F E L
Sbjct: 60 IVAFKESFEADGHLYIVMEYCDGG--DLMQ-------------KIKLQRGKLFPEDTILQ 104
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
F +C GV ++H +HRD+K+ NI LT+ G VKL DFGSA
Sbjct: 105 WF------------VQMCLGV----QHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSAR 148
Query: 344 IKCP----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
+ A ++VGTPY++ PE+ M Y+ K D+WSLG EL K P+
Sbjct: 149 LLTSPGAYACTYVGTPYYVPPEIWENM---PYNNKSDIWSLGCILYELCTLKHPF 200
Score = 95.8 bits (238), Expect = 6e-22
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 13/142 (9%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHK----RPLKEEEIAAICSG 62
LL ++KHPN + ++ + D ++VMEYC G D+++ K + E+ I
Sbjct: 51 LLAKMKHPNIVAFKESFEADGHLYIVMEYCDGG--DLMQKIKLQRGKLFPEDTILQWFVQ 108
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCP----ANSFVGTPYWMA 118
+ G+ ++H +HRD+K+ NI LT+ G VKL DFGSA + A ++VGTPY++
Sbjct: 109 MCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVP 168
Query: 119 PEVILAMDEGQYDGKVDVWSLG 140
PE+ M Y+ K D+WSLG
Sbjct: 169 PEIWENM---PYNNKSDIWSLG 187
Score = 41.9 bits (98), Expect = 7e-04
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 616 LVMEYCLGSASDIIEVHK----RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
+VMEYC G D+++ K + E+ I + G+ ++H +HRD+K+ NI
Sbjct: 75 IVMEYCDGG--DLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIF 132
Query: 672 LTETGTVKL 680
LT+ G VKL
Sbjct: 133 LTQNGKVKL 141
>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine
Kinase, Cell Division Cycle 2-like 1. Serine/Threonine
Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDC2L1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDC2L1, also
called PITSLRE, exists in different isoforms which are
named using the alias CDK11(p). The CDC2L1 gene produces
two protein products, CDK11(p110) and CDK11(p58). CDC2L1
is also represented by the caspase-processed CDK11(p46).
CDK11(p110), the major isoform, associates with cyclin L
and is expressed throughout the cell cycle. It is
involved in RNA processing and the regulation of
transcription. CDK11(p58) associates with cyclin D3 and
is expressed during the G2/M phase of the cell cycle. It
plays roles in spindle morphogenesis, centrosome
maturation, sister chromatid cohesion, and the
completion of mitosis. CDK11(p46) is formed from the
larger isoforms by caspases during TNFalpha- and
Fas-induced apoptosis. It functions as a downstream
effector kinase in apoptotic signaling pathways and
interacts with eukaryotic initiation factor 3f (eIF3f),
p21-activated kinase (PAK1), and Ran-binding protein
(RanBPM).
Length = 293
Score = 106 bits (267), Expect = 3e-25
Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 56/242 (23%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWAD-----ILKEIRFLRQ 218
+E L I G++G VY AR + EIVA+KK+ EK + L+EI L +
Sbjct: 7 YEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKM------EKEKEGFPITSLREINILLK 60
Query: 219 LKHPNTIEYRGCYL--RDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCF 276
L+HPN + + + ++VMEY +E + LK
Sbjct: 61 LQHPNIVTVKEVVVGSNLDKIYMVMEY-------------VEHD------------LKSL 95
Query: 277 TEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 336
E K+P + E+ + +L G+ +LH +HRD+K N+LL G +K+
Sbjct: 96 MET--------MKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKI 147
Query: 337 ADFGSA----SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI--ELAER 390
DFG A S P V T ++ APE++L +Y +D+WS+G CI EL +
Sbjct: 148 CDFGLAREYGSPLKPYTQLVVTLWYRAPELLL--GAKEYSTAIDMWSVG--CIFAELLTK 203
Query: 391 KP 392
KP
Sbjct: 204 KP 205
Score = 90.7 bits (226), Expect = 6e-20
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 22/176 (12%)
Query: 6 SLLRQLKHPNTIEYRGCYL--RDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGV 63
++L +L+HPN + + + ++VMEY ++E K+P + E+ + +
Sbjct: 56 NILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQL 115
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA----SIKCPANSFVGTPYWMAP 119
L G+ +LH +HRD+K N+LL G +K+ DFG A S P V T ++ AP
Sbjct: 116 LSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAP 175
Query: 120 EVILAMDEGQYDGKVDVWSLGITPGSL--KDP------EIAELFDKEDPEKIFEDL 167
E++L +Y +D+WS+G L K P EI +L KIF+ L
Sbjct: 176 ELLL--GAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQL------NKIFKLL 223
Score = 52.6 bits (127), Expect = 3e-07
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
+VMEY ++E K+P + E+ + +L G+ +LH +HRD+K N+LL
Sbjct: 83 MVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNR 142
Query: 676 GTVKL 680
G +K+
Sbjct: 143 GILKI 147
>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase,
p38 Mitogen-Activated Protein Kinase. Serine/Threonine
Kinases (STKs), p38 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The p38 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. p38 kinases are
mitogen-activated protein kinases (MAPKs), serving as
important mediators of cellular responses to
extracellular signals. They function in the regulation
of the cell cycle, cell development, cell
differentiation, senescence, tumorigenesis, apoptosis,
pain development and pain progression, and immune
responses. p38 kinases are activated by the MAPK kinases
MKK3 and MKK6, which in turn are activated by upstream
MAPK kinase kinases including TAK1, ASK1, and MLK3, in
response to cellular stresses or inflammatory cytokines.
p38 substrates include other protein kinases and factors
that regulate transcription, nuclear export, mRNA
stability and translation. p38 kinases are drug targets
for the inflammatory diseases psoriasis, rheumatoid
arthritis, and chronic pulmonary disease. Vertebrates
contain four isoforms of p38, named alpha, beta, gamma,
and delta, which show varying substrate specificity and
expression patterns. p38alpha and p38beta are
ubiquitously expressed, p38gamma is predominantly found
in skeletal muscle, and p38delta is found in the heart,
lung, testis, pancreas, and small intestine.
Length = 343
Score = 103 bits (260), Expect = 5e-24
Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 56/239 (23%)
Query: 162 KIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKH 221
+++L +G G++G V A + VAIKK+S Q A +E+R L+ + H
Sbjct: 15 DRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSR-PFQSAIHAKRTYRELRLLKHMDH 73
Query: 222 PNTIEYRGCYLRDHTA------WLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQ-LK 274
N I + + +LV MG L +K
Sbjct: 74 ENVIGLLDVFTPASSLEDFQDVYLVTHL----------------------MGADLNNIVK 111
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
C + L ++ I + +LRGL Y+HS G IHRD+K NI + E +
Sbjct: 112 C--------------QKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCEL 157
Query: 335 KLADFGSASIKCPANS----FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
K+ DFG A + +V T ++ APE++L + Y+ VD+WS+G CI +AE
Sbjct: 158 KILDFGLAR---HTDDEMTGYVATRWYRAPEIML--NWMHYNQTVDIWSVG--CI-MAE 208
Score = 82.7 bits (205), Expect = 6e-17
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 17/144 (11%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTA------WLVMEYCLGSASDIIEVHKRPLKEEEIAAIC 60
LL+ + H N I + + +LV ++I++ K L ++ I +
Sbjct: 67 LLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLMGADLNNIVKCQK--LSDDHIQFLV 124
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANS----FVGTPYW 116
+LRGL Y+HS G IHRD+K NI + E +K+ DFG A + +V T ++
Sbjct: 125 YQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLAR---HTDDEMTGYVATRWY 181
Query: 117 MAPEVILAMDEGQYDGKVDVWSLG 140
APE++L + Y+ VD+WS+G
Sbjct: 182 RAPEIML--NWMHYNQTVDIWSVG 203
Score = 46.9 bits (112), Expect = 2e-05
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 634 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
+ L ++ I + +LRGL Y+HS G IHRD+K NI + E
Sbjct: 113 QKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNE 153
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs),
MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK2 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 331
Score = 103 bits (258), Expect = 5e-24
Identities = 97/346 (28%), Positives = 153/346 (44%), Gaps = 62/346 (17%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
FE + E+G G+ G V + S I+A +K+ +L + A + I++E++ L + P
Sbjct: 7 FERISELGAGNGGVVTKVQHKPSGLIMA-RKLIHLEIKPAIR-NQIIRELQVLHECNSPY 64
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ + G + D + ME+ G + D Q LK
Sbjct: 65 IVGFYGAFYSDGEISICMEHMDGGSLD--------------------QVLK--------- 95
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRI-HRDVKAGNILLTETGTVKLADFGSA 342
+ + EE + + VLRGL YL +I HRDVK NIL+ G +KL DFG +
Sbjct: 96 ----EAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVS 151
Query: 343 S--IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA-ERKP-PYFNMN 398
I ANSFVGT +M+PE + Y + D+WS+G++ +ELA R P P +
Sbjct: 152 GQLIDSMANSFVGTRSYMSPE---RLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAK 208
Query: 399 AMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPP-----YFNMNAMSA------LYHI 447
+ A++ P + D + S + +PP M++ A L +I
Sbjct: 209 ELEAIF-----GRPVV---DGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYI 260
Query: 448 AQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTR 493
P L + ++ F FV+ CL KNPA+R L+ H + R
Sbjct: 261 VNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIKR 306
Score = 81.6 bits (201), Expect = 1e-16
Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 6/139 (4%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
+L + P + + G + D + ME+ G + D + + + EE + + VLRG
Sbjct: 56 VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRG 115
Query: 67 LNYLHSLGRI-HRDVKAGNILLTETGTVKLADFGSAS--IKCPANSFVGTPYWMAPEVIL 123
L YL +I HRDVK NIL+ G +KL DFG + I ANSFVGT +M+PE
Sbjct: 116 LAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPE--- 172
Query: 124 AMDEGQYDGKVDVWSLGIT 142
+ Y + D+WS+G++
Sbjct: 173 RLQGTHYSVQSDIWSMGLS 191
Score = 43.9 bits (103), Expect = 2e-04
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRI-HRDVKAGNILLTE 674
+ ME+ G + D + + + EE + + VLRGL YL +I HRDVK NIL+
Sbjct: 80 ICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNS 139
Query: 675 TGTVKL 680
G +KL
Sbjct: 140 RGEIKL 145
>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 8. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek8 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek8 contains an
N-terminal kinase catalytic domain and a C-terminal RCC1
(regulator of chromosome condensation) domain. A double
point mutation in Nek8 causes cystic kidney disease in
mice that genetically resembles human autosomal
recessive polycystic kidney disease (ARPKD). Nek8 is
also associated with a rare form of juvenile renal
cystic disease, nephronophthisis type 9. It has been
suggested that a defect in the ciliary localization of
Nek8 contributes to the development of cysts manifested
by these diseases.
Length = 256
Score = 101 bits (253), Expect = 6e-24
Identities = 72/233 (30%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+E +R +G G+FG V+ R +++V IK++ E+ A E + L+ L HPN
Sbjct: 2 YEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLA-AQNECQVLKLLSHPN 60
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
IEY +L D +VMEY G G Q +C
Sbjct: 61 IIEYYENFLEDKALMIVMEYAPG------------------GTLAEYIQKRC-------- 94
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV-KLADFGSA 342
L E+ I +L L+++H+ +HRD+K NILL + V K+ DFG +
Sbjct: 95 -----NSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGIS 149
Query: 343 SI---KCPANSFVGTPYWMAPEVILAMDEGQ-YDGKVDVWSLGITCIELAERK 391
I K A + VGTP +++PE+ EG+ Y+ K D+W+LG ELA K
Sbjct: 150 KILSSKSKAYTVVGTPCYISPELC----EGKPYNQKSDIWALGCVLYELASLK 198
Score = 86.4 bits (214), Expect = 9e-19
Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 11/141 (7%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRP-LKEEEIAAICSGVL 64
+L+ L HPN IEY +L D +VMEY G+ ++ I+ L E+ I +L
Sbjct: 52 VLKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQIL 111
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTV-KLADFGSASI---KCPANSFVGTPYWMAPE 120
L+++H+ +HRD+K NILL + V K+ DFG + I K A + VGTP +++PE
Sbjct: 112 LALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCYISPE 171
Query: 121 VILAMDEGQ-YDGKVDVWSLG 140
+ EG+ Y+ K D+W+LG
Sbjct: 172 LC----EGKPYNQKSDIWALG 188
Score = 35.6 bits (82), Expect = 0.065
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 616 LVMEYCLG-SASDIIEVHKRP-LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
+VMEY G + ++ I+ L E+ I +L L+++H+ +HRD+K NILL
Sbjct: 76 IVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLD 135
Query: 674 ETGTV 678
+ V
Sbjct: 136 KHKMV 140
>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Rho-associated
coiled-coil containing protein kinase (ROCK) and Nuclear
Dbf2-Related (NDR)-like kinase subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK- and NDR-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include ROCK and
ROCK-like proteins such as DMPK, MRCK, and CRIK, as well
as NDR and NDR-like proteins such as LATS, CBK1 and
Sid2p. ROCK and CRIK are effectors of the small GTPase
Rho, while MRCK is an effector of the small GTPase
Cdc42. NDR and NDR-like kinases contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. Proteins in this subfamily are involved in
regulating many cellular functions including
contraction, motility, division, proliferation,
apoptosis, morphogenesis, and cytokinesis.
Length = 350
Score = 102 bits (256), Expect = 2e-23
Identities = 73/277 (26%), Positives = 111/277 (40%), Gaps = 91/277 (32%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKM--SYLGKQC------AEKWADILKEI-- 213
FE ++ IG G+FG V+ R + ++ A+K + S + K+ AE+ DIL +
Sbjct: 3 FEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAER--DILADADS 60
Query: 214 RFLRQLKHPNTIEYRGCYLRD-HTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQ 272
++ +L +D +LVMEY G D++ N L +
Sbjct: 61 PWIVKLY---------YSFQDEEHLYLVMEYMPGG--DLM---------------NLLIR 94
Query: 273 LKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 332
F E A F E + A+ + +H LG IHRD+K NIL+ G
Sbjct: 95 KDVFPEETARFYIA--------ELVLAL--------DSVHKLGFIHRDIKPDNILIDADG 138
Query: 333 TVKLADFGSAS---------------------------------IKCPANSFVGTPYWMA 359
+KLADFG + ANS VGTP ++A
Sbjct: 139 HIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIA 198
Query: 360 PEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
PEV+ Y + D WSLG+ E+ PP+++
Sbjct: 199 PEVLRGT---PYGLECDWWSLGVILYEMLYGFPPFYS 232
Score = 87.7 bits (218), Expect = 2e-18
Identities = 47/151 (31%), Positives = 64/151 (42%), Gaps = 48/151 (31%)
Query: 30 WLVMEYCLGSASDIIE--VHKRPLKEEE----IAAICSGVLRGLNYLHSLGRIHRDVKAG 83
+LVMEY G D++ + K EE IA + + + +H LG IHRD+K
Sbjct: 77 YLVMEYMPGG--DLMNLLIRKDVFPEETARFYIAELVLAL----DSVHKLGFIHRDIKPD 130
Query: 84 NILLTETGTVKLADFGSAS---------------------------------IKCPANSF 110
NIL+ G +KLADFG + ANS
Sbjct: 131 NILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANST 190
Query: 111 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
VGTP ++APEV+ Y + D WSLG+
Sbjct: 191 VGTPDYIAPEVLRGT---PYGLECDWWSLGV 218
Score = 51.9 bits (125), Expect = 6e-07
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 616 LVMEYCLGSASDIIE--VHKRPLKEEE----IAAICSGVLRGLNYLHSLGRIHRDVKAGN 669
LVMEY G D++ + K EE IA + + + +H LG IHRD+K N
Sbjct: 78 LVMEYMPGG--DLMNLLIRKDVFPEETARFYIAELVLAL----DSVHKLGFIHRDIKPDN 131
Query: 670 ILLTETGTVKL 680
IL+ G +KL
Sbjct: 132 ILIDADGHIKL 142
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 100 bits (251), Expect = 2e-23
Identities = 84/330 (25%), Positives = 131/330 (39%), Gaps = 86/330 (26%)
Query: 164 FEDLREIGHGSFGAVYYARCL-VSREIVAIKKMSY----LGKQCAEK---WADILKEIRF 215
+ L +G G+FG VY R + ++A+K+++ GK E+ DI+ E+
Sbjct: 2 YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTI 61
Query: 216 LR-QLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLK 274
++ QL+HPN + Y +L + ++VM+ G+ +G LK
Sbjct: 62 IKEQLRHPNIVRYYKTFLENDRLYIVMDLIEGAP-----------------LGEHFNSLK 104
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRI-HRDVKAGNILLTETGT 333
+ F EE I I ++ L YLH RI HRD+ NI+L E
Sbjct: 105 EKKQRFT------------EERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDK 152
Query: 334 VKLADFGSASIKCPAN---SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 390
V + DFG A K P + S VGT + PE++ G+ K DVW+ G CI
Sbjct: 153 VTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGE---KADVWAFG--CI----- 202
Query: 391 KPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQN 450
LY + LQ PP+++ N +S I +
Sbjct: 203 ------------LYQMCT-----LQ-----------------PPFYSTNMLSLATKIVEA 228
Query: 451 DTPCLQSSDWSDTFAHFVSSCLAKNPADRP 480
L +S+ ++SCL + RP
Sbjct: 229 VYEPLPEGMYSEDVTDVITSCLTPDAEARP 258
Score = 77.5 bits (191), Expect = 1e-15
Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 9 RQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSA-----SDIIEVHKRPLKEEEIAAICSGV 63
QL+HPN + Y +L + ++VM+ G+ + + E +R EE I I +
Sbjct: 64 EQLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQR-FTEERIWNIFVQM 122
Query: 64 LRGLNYLHSLGRI-HRDVKAGNILLTETGTVKLADFGSASIKCPAN---SFVGTPYWMAP 119
+ L YLH RI HRD+ NI+L E V + DFG A K P + S VGT + P
Sbjct: 123 VLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKLTSVVGTILYSCP 182
Query: 120 EVILAMDEGQYDGKVDVWSLG 140
E++ G+ K DVW+ G
Sbjct: 183 EIVKNEPYGE---KADVWAFG 200
Score = 33.2 bits (76), Expect = 0.38
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 638 EEEIAAICSGVLRGLNYLHSLGRI-HRDVKAGNILLTETGTV 678
EE I I ++ L YLH RI HRD+ NI+L E V
Sbjct: 112 EERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKV 153
>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and
Dbf2p-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), ROCK- and NDR-like
subfamily, fungal Sid2p- and Dbf2p-like proteins,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sid2p- and
Dbf2p-like group is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This group contains fungal kinases including
Schizosaccharomyces pombe Sid2p and Saccharomyces
cerevisiae Dbf2p. Group members show similarity to NDR
kinases in that they contain an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Sid2p plays a
crucial role in the septum initiation network (SIN) and
in the initiation of cytokinesis. Dbf2p is important in
regulating the mitotic exit network (MEN) and in
cytokinesis.
Length = 333
Score = 102 bits (255), Expect = 2e-23
Identities = 84/299 (28%), Positives = 116/299 (38%), Gaps = 65/299 (21%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWAD----ILKEIRFLRQL 219
F+ L ++G G +G V+ A+ + EIVA+K+M K + +L E L
Sbjct: 3 FQILTQVGQGGYGQVFLAKKKDTGEIVALKRMK---KSLLF-KLNEVRHVLTERDILTTT 58
Query: 220 KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
K ++ + D +L MEY G D R L L +E
Sbjct: 59 KSEWLVKLLYAFQDDEYLYLAMEYVPGG--DF-------RTL--------LNNLGVLSED 101
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
A F E A+ + LH LG IHRD+K N L+ +G +KL DF
Sbjct: 102 HARFYMA--------EMFEAV--------DALHELGYIHRDLKPENFLIDASGHIKLTDF 145
Query: 340 G-SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMN 398
G S I ANS VG+P +MAPEV+ YD VD WSLG E PP+
Sbjct: 146 GLSKGIVTYANSVVGSPDYMAPEVLRGK---GYDFTVDYWSLGCMLYEFLCGFPPFSGST 202
Query: 399 A---MSALYHIAQ------NDTPCLQSSD--WSVIKTISSTAER---------KPPYFN 437
L + + D P SD W +I + + R P+F
Sbjct: 203 PNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNHPFFK 261
Score = 87.1 bits (216), Expect = 2e-18
Identities = 45/112 (40%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 30 WLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 89
+L MEY G + + L E+ + + ++ LH LG IHRD+K N L+
Sbjct: 77 YLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDA 136
Query: 90 TGTVKLADFG-SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
+G +KL DFG S I ANS VG+P +MAPEV+ YD VD WSLG
Sbjct: 137 SGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGK---GYDFTVDYWSLG 185
Score = 42.0 bits (99), Expect = 0.001
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
L MEY G + + L E+ + + ++ LH LG IHRD+K N L+ +
Sbjct: 78 LAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDAS 137
Query: 676 GTVKL 680
G +KL
Sbjct: 138 GHIKL 142
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 102 bits (255), Expect = 2e-23
Identities = 85/336 (25%), Positives = 135/336 (40%), Gaps = 84/336 (25%)
Query: 165 EDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
E + IG G+ G VY + + A+K + G I +EI LR + HPN
Sbjct: 77 ERVNRIGSGAGGTVYKVIHRPTGRLYALKVI--YGNHEDTVRRQICREIEILRDVNHPNV 134
Query: 225 IEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
++ + + +++E+ G + +EG H A
Sbjct: 135 VKCHDMFDHNGEIQVLLEFMDGGS--------------LEG------------THIA--- 165
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI 344
E+ +A + +L G+ YLH +HRD+K N+L+ VK+ADFG + I
Sbjct: 166 --------DEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRI 217
Query: 345 KC----PANSFVGTPYWMAPEVI-LAMDEGQYDGKV-DVWSLGITCIELAERKPPYFNMN 398
P NS VGT +M+PE I ++ G YDG D+WSLG++ +E + P+
Sbjct: 218 LAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPF---- 273
Query: 399 AMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSS 458
+ DW+ + M A+ + P S
Sbjct: 274 -------------GVGRQGDWASL------------------MCAICMSQPPEAPATASR 302
Query: 459 DWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRP 494
+ F HF+S CL + PA R S+ +LL H + R
Sbjct: 303 E----FRHFISCCLQREPAKRWSAMQLLQHPFILRA 334
Score = 81.4 bits (201), Expect = 2e-16
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
+LR + HPN ++ + + +++E+ G + + E+ +A + +L G
Sbjct: 125 ILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLE----GTHIADEQFLADVARQILSG 180
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKC----PANSFVGTPYWMAPEVI 122
+ YLH +HRD+K N+L+ VK+ADFG + I P NS VGT +M+PE I
Sbjct: 181 IAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERI 240
Query: 123 -LAMDEGQYDGKV-DVWSLGIT 142
++ G YDG D+WSLG++
Sbjct: 241 NTDLNHGAYDGYAGDIWSLGVS 262
Score = 36.7 bits (85), Expect = 0.045
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 637 KEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
E+ +A + +L G+ YLH +HRD+K N+L+ VK+
Sbjct: 166 DEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKI 209
>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 1. Protein kinases (PKs),
MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK1 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients. MEK1 also plays a role in cell
cycle control.
Length = 333
Score = 99.3 bits (247), Expect = 1e-22
Identities = 94/345 (27%), Positives = 151/345 (43%), Gaps = 50/345 (14%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
FE + E+G G+ G V+ S I+A +K+ +L + A + I++E++ L + P
Sbjct: 7 FEKISELGAGNGGVVFKVSHKPSGLIMA-RKLIHLEIKPAIR-NQIIRELQVLHECNSPY 64
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ + G + D + ME+ G + D Q LK
Sbjct: 65 IVGFYGAFYSDGEISICMEHMDGGSLD--------------------QVLK--------- 95
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRI-HRDVKAGNILLTETGTVKLADFGSA 342
+ + P E+ + + V++GL YL +I HRDVK NIL+ G +KL DFG +
Sbjct: 96 --KAGRIP--EQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 151
Query: 343 S--IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAM 400
I ANSFVGT +M+PE + Y + D+WS+G++ +E+A + P +A
Sbjct: 152 GQLIDSMANSFVGTRSYMSPE---RLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAK 208
Query: 401 SALYHIAQNDTPCLQSSDWSVI-----KTISSTA-ERKPPYFNMNAMSALYHIAQNDTPC 454
S+ S + +SS + +PP M L +I P
Sbjct: 209 ELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPP---MAIFELLDYIVNEPPPK 265
Query: 455 LQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSV 499
L S + F FV+ CL KNPA+R +L+ H + R + V
Sbjct: 266 LPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSEAEEV 310
Score = 75.1 bits (184), Expect = 2e-14
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
+L + P + + G + D + ME+ G + D + + E+ + + V++G
Sbjct: 56 VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKG 115
Query: 67 LNYLHSLGRI-HRDVKAGNILLTETGTVKLADFGSAS--IKCPANSFVGTPYWMAPEVIL 123
L YL +I HRDVK NIL+ G +KL DFG + I ANSFVGT +M+PE
Sbjct: 116 LTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPE--- 172
Query: 124 AMDEGQYDGKVDVWSLGIT 142
+ Y + D+WS+G++
Sbjct: 173 RLQGTHYSVQSDIWSMGLS 191
Score = 38.1 bits (88), Expect = 0.015
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRI-HRDVKAGNILLTE 674
+ ME+ G + D + + E+ + + V++GL YL +I HRDVK NIL+
Sbjct: 80 ICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNS 139
Query: 675 TGTVKL 680
G +KL
Sbjct: 140 RGEIKL 145
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 96.9 bits (242), Expect = 2e-22
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 27/181 (14%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSA-SDIIEVHKRPLKEEEIAA-ICSGV 63
+L + HP ++ + +++MEYCLG I+ R L +E A + V
Sbjct: 45 EILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGELWTIL--RDRGLFDEYTARFYIACV 102
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKC--PANSFVGTPYWMAPE 120
+ YLH+ G I+RD+K N+LL G VKL DFG A +K +F GTP ++APE
Sbjct: 103 VLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPE 162
Query: 121 VILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELF--------DKEDPEKIFED-LREIG 171
+IL +G YD VD WSLGI + EL D EDP +I+ D L+ G
Sbjct: 163 IILN--KG-YDFSVDYWSLGIL--------LYELLTGRPPFGEDDEDPMEIYNDILKGNG 211
Query: 172 H 172
Sbjct: 212 K 212
Score = 96.9 bits (242), Expect = 2e-22
Identities = 68/231 (29%), Positives = 101/231 (43%), Gaps = 45/231 (19%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMS--YLGKQCAEKWADILKEIRFLRQLKHPNTIEY 227
+G G FG V + A+K + ++ + ++ I E L + HP ++
Sbjct: 1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQE--HIFSEKEILEECNHPFIVKL 58
Query: 228 RGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEV 287
+ +++MEYCLG G L+ +
Sbjct: 59 YRTFKDKKYIYMLMEYCLG--------------------GE-------------LWTI-L 84
Query: 288 HKRPLKEEEIAA-ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIK 345
R L +E A + V+ YLH+ G I+RD+K N+LL G VKL DFG A +K
Sbjct: 85 RDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLK 144
Query: 346 C--PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
+F GTP ++APE+IL +G YD VD WSLGI EL +PP+
Sbjct: 145 SGQKTWTFCGTPEYVAPEIILN--KG-YDFSVDYWSLGILLYELLTGRPPF 192
Score = 47.6 bits (114), Expect = 9e-06
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 616 LVMEYCLGSA-SDIIEVHKRPLKEEEIAA-ICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
++MEYCLG I+ R L +E A + V+ YLH+ G I+RD+K N+LL
Sbjct: 70 MLMEYCLGGELWTIL--RDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLD 127
Query: 674 ETGTVKL 680
G VKL
Sbjct: 128 SNGYVKL 134
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 96.2 bits (239), Expect = 5e-22
Identities = 79/275 (28%), Positives = 126/275 (45%), Gaps = 45/275 (16%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIE 226
+R +G GS+G V R + IKK++ E+ A +E + L QLKHPN +
Sbjct: 5 VRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKA-AEQEAQLLSQLKHPNIVA 63
Query: 227 YRGCYL-RDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
YR + D ++VM +C G G+ +LK
Sbjct: 64 YRESWEGEDGLLYIVMGFCEG--------------------GDLYHKLK----------- 92
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI- 344
E + L E ++ + L YLH +HRD+K N+ LT T +K+ D G A +
Sbjct: 93 EQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVL 152
Query: 345 --KCP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMS 401
+C A++ +GTPY+M+PE+ Y+ K DVW+LG E+A K FN M+
Sbjct: 153 ENQCDMASTLIGTPYYMSPEL---FSNKPYNYKSDVWALGCCVYEMATLKHA-FNAKDMN 208
Query: 402 AL-YHIAQNDTPCLQSSDWS--VIKTISSTAERKP 433
+L Y I + P + D+S + + I++ ++P
Sbjct: 209 SLVYRIIEGKLPPM-PKDYSPELGELIATMLSKRP 242
Score = 83.1 bits (205), Expect = 1e-17
Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 5 SSLLRQLKHPNTIEYRGCYL-RDHTAWLVMEYCLGSA--SDIIEVHKRPLKEEEIAAICS 61
+ LL QLKHPN + YR + D ++VM +C G + E + L E ++
Sbjct: 50 AQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFV 109
Query: 62 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI---KCP-ANSFVGTPYWM 117
+ L YLH +HRD+K N+ LT T +K+ D G A + +C A++ +GTPY+M
Sbjct: 110 QIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYM 169
Query: 118 APEVILAMDEGQYDGKVDVWSLG 140
+PE+ Y+ K DVW+LG
Sbjct: 170 SPEL---FSNKPYNYKSDVWALG 189
Score = 33.8 bits (77), Expect = 0.31
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 616 LVMEYCLGSA--SDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
+VM +C G + E + L E ++ + L YLH +HRD+K N+ LT
Sbjct: 77 IVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLT 136
Query: 674 ETGTVKL 680
T +K+
Sbjct: 137 RTNIIKV 143
>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 12.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 12 (CDK12) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK12 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK12 is also called Cdc2-related protein
kinase 7 (CRK7) or Cdc2-related kinase
arginine/serine-rich (CrkRS). It is a unique CDK that
contains an arginine/serine-rich (RS) domain, which is
predominantly found in splicing factors. CDK12 is widely
expressed in tissues. It interacts with cyclins L1 and
L2, and plays roles in regulating transcription and
alternative splicing.
Length = 302
Score = 96.0 bits (239), Expect = 1e-21
Identities = 76/254 (29%), Positives = 114/254 (44%), Gaps = 58/254 (22%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWA---DILKEIRFLRQLK 220
F+ + +IG G++G VY AR + E+VA+KK+ + EK ++EI+ LRQL
Sbjct: 9 FDIIGQIGEGTYGQVYKARDKDTGELVALKKV----RLDNEKEGFPITAIREIKILRQLN 64
Query: 221 HPNTIEYRGC---------YLRDHTA-WLVMEYCLGSASDIIEVHWIEREFHVEGMGNRL 270
H N + + + +D A +LV EY ++E G+ +
Sbjct: 65 HRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLE----------SGLVH-- 112
Query: 271 QQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 330
F+ E+ I + +L GLNY H +HRD+K NILL
Sbjct: 113 ------------FS---------EDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNN 151
Query: 331 TGTVKLADFGSASI-----KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI 385
G +KLADFG A + P + V T ++ PE++L E +Y +DVWS G
Sbjct: 152 KGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLG--EERYGPAIDVWSCGCILG 209
Query: 386 ELAERKPPYFNMNA 399
EL +K P F N
Sbjct: 210 ELFTKK-PIFQANQ 222
Score = 80.6 bits (199), Expect = 2e-16
Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 7 LLRQLKHPNTIEYRGC---------YLRDHTA-WLVMEYCLGSASDIIEVHKRPLKEEEI 56
+LRQL H N + + + +D A +LV EY ++E E+ I
Sbjct: 59 ILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHI 118
Query: 57 AAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI-----KCPANSFV 111
+ +L GLNY H +HRD+K NILL G +KLADFG A + P + V
Sbjct: 119 KSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKV 178
Query: 112 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITPGSL 146
T ++ PE++L E +Y +DVWS G G L
Sbjct: 179 ITLWYRPPELLLG--EERYGPAIDVWSCGCILGEL 211
Score = 48.2 bits (115), Expect = 8e-06
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LV EY ++E E+ I + +L GLNY H +HRD+K NILL
Sbjct: 93 LVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNK 152
Query: 676 GTVKL 680
G +KL
Sbjct: 153 GQIKL 157
>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase 15.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 15 (MAPK15) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK15 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. Human MAPK15 is also called
Extracellular signal Regulated Kinase 8 (ERK8) while the
rat protein is called ERK7. ERK7 and ERK8 display both
similar and different biochemical properties. They
autophosphorylate and activate themselves and do not
require upstream activating kinases. ERK7 is
constitutively active and is not affected by
extracellular stimuli whereas ERK8 shows low basal
activity and is activated by DNA-damaging agents. ERK7
and ERK8 also have different substrate profiles. Genome
analysis shows that they are orthologs with similar gene
structures. ERK7 and ERK 8 may be involved in the
signaling of some nuclear receptor transcription
factors. ERK7 regulates hormone-dependent degradation of
estrogen receptor alpha while ERK8 down-regulates the
transcriptional co-activation androgen and
glucocorticoid receptors.
Length = 337
Score = 96.5 bits (241), Expect = 1e-21
Identities = 100/390 (25%), Positives = 162/390 (41%), Gaps = 95/390 (24%)
Query: 161 EKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKM--SYLGKQCAEKWADILKEIRFLRQ 218
+ +E L+++G G++G V+ A ++E+VA+KK+ ++ A++ +EI FL++
Sbjct: 6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQR---TFREIMFLQE 62
Query: 219 LK-HPNTIE----YRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQL 273
L HPN ++ + +D +LV EY +E + H N L+
Sbjct: 63 LGDHPNIVKLLNVIKAENDKD--IYLVFEY-------------METDLHAVIRANILE-- 105
Query: 274 KCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGT 333
+VHKR I +L+ L Y+HS IHRD+K NILL
Sbjct: 106 ------------DVHKR--------YIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCR 145
Query: 334 VKLADFGSA-SIKCPANS--------FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITC 384
VKLADFG A S+ + +V T ++ APE++L +Y VD+WS+G C
Sbjct: 146 VKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLG--STRYTKGVDMWSVG--C 201
Query: 385 IELAE--RKPPYF----NMNA----MSALYHIAQNDTPCLQSS-DWSVIKTISSTAERKP 433
I L E P F +N + + + D ++S +++ ++ S RKP
Sbjct: 202 I-LGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPS-RPRKP 259
Query: 434 PYFNMNAMSALYHIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTR 493
+ L A +D + L NP R ++ L H V +
Sbjct: 260 -------LDELLPKASDDA------------LDLLKKLLVFNPNKRLTAEEALEHPYVAQ 300
Query: 494 PRSPSVLVDLIRRTKAAVRD---LDNLNYR 520
+PS L + D L YR
Sbjct: 301 FHNPSDEPVLPYPITIPLDDNVKLSVAEYR 330
Score = 68.8 bits (169), Expect = 2e-12
Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 32/154 (20%)
Query: 7 LLRQLK-HPNTIE----YRGCYLRDHTAWLVMEYCLGSASDII------EVHKRPLKEEE 55
L++L HPN ++ + +D +LV EY +I +VHKR
Sbjct: 59 FLQELGDHPNIVKLLNVIKAENDKD--IYLVFEYMETDLHAVIRANILEDVHKR------ 110
Query: 56 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANS----- 109
I +L+ L Y+HS IHRD+K NILL VKLADFG A S+ +
Sbjct: 111 --YIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPV 168
Query: 110 ---FVGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
+V T ++ APE++L +Y VD+WS+G
Sbjct: 169 LTDYVATRWYRAPEILLG--STRYTKGVDMWSVG 200
Score = 41.8 bits (99), Expect = 0.001
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 630 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+VHKR I +L+ L Y+HS IHRD+K NILL VKL
Sbjct: 106 DVHKR--------YIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKL 148
>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent
protein Kinase 1-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 1 (CDK1)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes, plants, and yeasts, as well as CDK2 and
CDK3. CDK1 is also called Cell division control protein
2 (Cdc2) or p34 protein kinase, and is regulated by
cyclins A, B, and E. The CDK1/cyclin A complex controls
G2 phase entry and progression while the CDK1/cyclin B
complex is critical for G2 to M phase transition. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication.
Studies in knockout mice revealed that CDK1 can
compensate for the loss of the cdk2 gene as it can also
bind cyclin E and drive G1 to S phase transition. CDK3
is regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 283
Score = 95.1 bits (237), Expect = 1e-21
Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 43/235 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
++ + +IG G++G VY AR ++ EIVA+KK+ L + + ++EI L++L HPN
Sbjct: 1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIR-LETEDEGVPSTAIREISLLKELNHPN 59
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ ++ +LV E+ D LK + +
Sbjct: 60 IVRLLDVVHSENKLYLVFEFL-----D--------------------LDLKKYMDS---- 90
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA- 342
L I + +L+G+ Y HS +HRD+K N+L+ G +KLADFG A
Sbjct: 91 ---SPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLAR 147
Query: 343 SIKCPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI--ELAERKP 392
+ P ++ V T ++ APE++L QY VD+WS+G CI E+ R+P
Sbjct: 148 AFGVPVRTYTHEVVTLWYRAPEILLG--SRQYSTPVDIWSIG--CIFAEMVNRRP 198
Score = 79.3 bits (196), Expect = 4e-16
Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 31/180 (17%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC---LGSASDIIEVHKRPLKEEEIAAICSG 62
SLL++L HPN + ++ +LV E+ L D L I +
Sbjct: 50 SLLKELNHPNIVRLLDVVHSENKLYLVFEFLDLDLKKYMD--SSPLTGLDPPLIKSYLYQ 107
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSF---VGTPYWMA 118
+L+G+ Y HS +HRD+K N+L+ G +KLADFG A + P ++ V T ++ A
Sbjct: 108 LLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRA 167
Query: 119 PEVILAMDEGQYDGKVDVWSLG-----------ITPGSLKDPEIAELFDKEDPEKIFEDL 167
PE++L QY VD+WS+G + PG D EI +LF +IF L
Sbjct: 168 PEILLG--SRQYSTPVDIWSIGCIFAEMVNRRPLFPG---DSEIDQLF------RIFRTL 216
Score = 37.7 bits (88), Expect = 0.016
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+L+G+ Y HS +HRD+K N+L+ G +KL
Sbjct: 108 LLQGIAYCHSHRVLHRDLKPQNLLIDREGALKL 140
>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Tyrosine kinase expressed in hepatocellular carcinoma
(Tec) subfamily; catalytic (c) domain. The Tec subfamily
is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk
(Txk), and similar proteins. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tec kinases are
cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with
similarity to Src kinases in that they contain Src
homology protein interaction domains (SH3, SH2)
N-terminal to the catalytic tyr kinase domain. Unlike
Src kinases, most Tec subfamily members (except Rlk)
also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases form the second largest subfamily of nRTKs and
are expressed mainly by haematopoietic cells, although
Tec and Bmx are also found in endothelial cells. B-cells
express Btk and Tec, while T-cells express Itk, Txk, and
Tec. Collectively, Tec kinases are expressed in a
variety of myeloid cells such as mast cells, platelets,
macrophages, and dendritic cells. Each Tec kinase shows
a distinct cell-type pattern of expression. The function
of Tec kinases in lymphoid cells have been studied
extensively. They play important roles in the
development, differentiation, maturation, regulation,
survival, and function of B-cells and T-cells. Mutations
in Btk cause the severe B-cell immunodeficiency,
X-linked agammaglobulinaemia (XLA).
Length = 256
Score = 94.4 bits (235), Expect = 2e-21
Identities = 67/249 (26%), Positives = 105/249 (42%), Gaps = 48/249 (19%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIE 226
L+E+G G FG V+ + + VAIK + ++ A D ++E + + +L HPN ++
Sbjct: 9 LKELGSGQFGVVHLGKWRGKID-VAIKMI----REGAMSEDDFIEEAKVMMKLSHPNLVQ 63
Query: 227 YRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF- 285
G + ++V EY + L N+
Sbjct: 64 LYGVCTKQRPIFIVTEY---------------------------------MANGCLLNYL 90
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS-- 343
K L E + +CS V + YL S G IHRD+ A N L+ E VK++DFG A
Sbjct: 91 RERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYV 150
Query: 344 IKCPANSFVGTPY---WMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPPYFNMNA 399
+ S GT + W PEV D ++ K DVWS G+ E+ +E K PY +
Sbjct: 151 LDDQYTSSQGTKFPVKWAPPEVF---DYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSN 207
Query: 400 MSALYHIAQ 408
+ ++
Sbjct: 208 SEVVESVSA 216
Score = 84.4 bits (209), Expect = 5e-18
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLR 65
++ +L HPN ++ G + ++V EY G + + K L E + +CS V
Sbjct: 52 VMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCE 111
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS--IKCPANSFVGTPY---WMAPE 120
+ YL S G IHRD+ A N L+ E VK++DFG A + S GT + W PE
Sbjct: 112 AMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPE 171
Query: 121 VILAMDEGQYDGKVDVWSLGI 141
V D ++ K DVWS G+
Sbjct: 172 VF---DYSRFSSKSDVWSFGV 189
Score = 46.7 bits (111), Expect = 2e-05
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 616 LVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
+V EY G + + K L E + +CS V + YL S G IHRD+ A N L+ E
Sbjct: 76 IVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGE 135
Query: 675 TGTVKL 680
VK+
Sbjct: 136 DNVVKV 141
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 1. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is
associated with centrosomes throughout the cell cycle.
It is involved in the formation of primary cilium and in
the maintenance of centrosomes. It cycles through the
nucleus and may be capable of relaying signals between
the cilium and the nucleus. Nek1 is implicated in the
development of polycystic kidney disease, which is
characterized by benign polycystic tumors formed by
abnormal overgrowth of renal epithelial cells. It
appears also to be involved in DNA damage response, and
may be important for both correct DNA damage checkpoint
activation and DNA repair.
Length = 256
Score = 94.1 bits (234), Expect = 2e-21
Identities = 78/332 (23%), Positives = 132/332 (39%), Gaps = 81/332 (24%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+ +++IG GSFG + + IK+++ E+ + KE+ L +KHPN
Sbjct: 2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKER-EESRKEVAVLSNMKHPN 60
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
++Y+ + + ++VM+YC G + +
Sbjct: 61 IVQYQESFEENGNLYIVMDYCEGG------------------------------DLYKKI 90
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
N + E++I + L ++H +HRD+K+ NI LT+ GT+KL DFG A
Sbjct: 91 NAQ-RGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIAR 149
Query: 344 IKCP----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNA 399
+ A + +GTPY+++PE+ + Y+ K D+W+LG E+ K F
Sbjct: 150 VLNSTVELARTCIGTPYYLSPEIC---ENRPYNNKSDIWALGCVLYEMCTLKHA-FEAGN 205
Query: 400 MSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSD 459
M L V+K I + PP SS
Sbjct: 206 MKNL-----------------VLKIIRGSY---PPV---------------------SSH 224
Query: 460 WSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
+S + VS +NP DRPS +L + +
Sbjct: 225 YSYDLRNLVSQLFKRNPRDRPSVNSILEKNFI 256
Score = 88.7 bits (220), Expect = 2e-19
Identities = 45/146 (30%), Positives = 81/146 (55%), Gaps = 19/146 (13%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKR-------PLKEEEIAA 58
++L +KHPN ++Y+ + + ++VM+YC G +++K+ E++I
Sbjct: 51 AVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGG-----DLYKKINAQRGVLFPEDQILD 105
Query: 59 ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCP----ANSFVGTP 114
+ L ++H +HRD+K+ NI LT+ GT+KL DFG A + A + +GTP
Sbjct: 106 WFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTP 165
Query: 115 YWMAPEVILAMDEGQYDGKVDVWSLG 140
Y+++PE+ + Y+ K D+W+LG
Sbjct: 166 YYLSPEIC---ENRPYNNKSDIWALG 188
Score = 42.5 bits (100), Expect = 5e-04
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 19/97 (19%)
Query: 591 HPVTHLSQHSYNNNNSNYSSLFSPQLVMEYCLGSASDIIEVHKR-------PLKEEEIAA 643
HP Q S+ N + Y +VM+YC G +++K+ E++I
Sbjct: 58 HPNIVQYQESFEENGNLY-------IVMDYCEGG-----DLYKKINAQRGVLFPEDQILD 105
Query: 644 ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+ L ++H +HRD+K+ NI LT+ GT+KL
Sbjct: 106 WFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKL 142
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 2 (CDK2) and CDK3 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK2/3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK2 is regulated by cyclin E or cyclin A.
Upon activation by cyclin E, it phosphorylates the
retinoblastoma (pRb) protein which activates E2F
mediated transcription and allows cells to move into S
phase. The CDK2/cyclin A complex plays a role in
regulating DNA replication. CDK2, together with CDK4,
also regulates embryonic cell proliferation. Despite
these important roles, mice deleted for the cdk2 gene
are viable and normal except for being sterile. This may
be due to compensation provided by CDK1 (also called
Cdc2), which can also bind cyclin E and drive the G1 to
S phase transition. CDK3 is regulated by cyclin C and it
phosphorylates pRB specifically during the G0/G1
transition. This phosphorylation is required for cells
to exit G0 efficiently and enter the G1 phase.
Length = 284
Score = 94.1 bits (234), Expect = 4e-21
Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 39/233 (16%)
Query: 163 IFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHP 222
F+ + +IG G++G VY AR ++ E+VA+KK+ L + + ++EI L++L HP
Sbjct: 1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIR-LDTETEGVPSTAIREISLLKELNHP 59
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
N ++ ++ +LV E+ +H Q LK F + L
Sbjct: 60 NIVKLLDVIHTENKLYLVFEF----------LH---------------QDLKKFMDASPL 94
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA 342
+ I + +L+GL + HS +HRD+K N+L+ G +KLADFG A
Sbjct: 95 SGIPLP-------LIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 147
Query: 343 -SIKCPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 391
+ P ++ V T ++ APE++L Y VD+WSLG E+ R+
Sbjct: 148 RAFGVPVRTYTHEVVTLWYRAPEILLGCK--YYSTAVDIWSLGCIFAEMVTRR 198
Score = 78.3 bits (193), Expect = 9e-16
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 25/177 (14%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC---LGSASDIIEVHKRPLKEEEIAAICSG 62
SLL++L HPN ++ ++ +LV E+ L D + PL I +
Sbjct: 51 SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASPLSGIPL--PLIKSYLFQ 108
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSF---VGTPYWMA 118
+L+GL + HS +HRD+K N+L+ G +KLADFG A + P ++ V T ++ A
Sbjct: 109 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRA 168
Query: 119 PEVILAMDEGQYDGKVDVWSLG------ITPGSL--KDPEIAELFDKEDPEKIFEDL 167
PE++L Y VD+WSLG +T +L D EI +LF +IF L
Sbjct: 169 PEILLGCK--YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLF------RIFRTL 217
Score = 35.6 bits (82), Expect = 0.080
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+L+GL + HS +HRD+K N+L+ G +KL
Sbjct: 109 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKL 141
>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TEY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TEY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TEY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. There are two subtypes
of plant MAPKs based on the conserved phosphorylation
motif present in the activation loop, TEY and TDY. This
subfamily represents the TEY subtype and is further
subdivided into three groups (A, B, and C). Group A is
represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4
(NtNTF4), among others. They are mostly involved in
environmental and hormonal responses. AtMPK3 and AtMPK6
are also key regulators for stomatal development and
patterning. Group B is represented by AtMPK4, AtMPK13,
and NtNTF6, among others. They may be involved in both
cell division and environmental stress response. AtMPK4
also participates in regulating innate immunity. Group C
is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa
MAPK4 (OsMAPK4), among others. They may also be involved
in stress responses. AtMPK1 and AtMPK2 are activated
following mechanical injury and in the presence of
stress chemicals such as jasmonic acid, hydrogen
peroxide and abscisic acid. OsMAPK4 is also called
OsMSRMK3 for Multiple Stress-Responsive MAPK3.
Length = 337
Score = 94.7 bits (236), Expect = 5e-21
Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 46/232 (19%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWAD---ILKEIRFLRQLKHPNTIE 226
IG G++G V A+ + E VAIKK++ + D L+EI+ LR L H N I
Sbjct: 13 IGRGAYGIVCSAKNSETNEKVAIKKIA----NAFDNRIDAKRTLREIKLLRHLDHENVIA 68
Query: 227 YRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFE 286
++D ++ + +D+ V+ E M L Q+ ++
Sbjct: 69 -----IKD----IMPPPHREAFNDVYIVY--------ELMDTDLHQIIRSSQ-------- 103
Query: 287 VHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKC 346
L ++ +LRGL Y+HS +HRD+K N+LL +K+ DFG A
Sbjct: 104 ----TLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTS 159
Query: 347 PANSF----VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI--ELAERKP 392
F V T ++ APE++L E Y +DVWS+G CI EL RKP
Sbjct: 160 EKGDFMTEYVVTRWYRAPELLLNCSE--YTTAIDVWSVG--CIFAELLGRKP 207
Score = 74.3 bits (183), Expect = 3e-14
Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHT-----AWLVMEYCLGSASDIIEVHKRPLKEEEIAAICS 61
LLR L H N I + H ++V E II + L ++
Sbjct: 57 LLRHLDHENVIAIKDIMPPPHREAFNDVYIVYELMDTDLHQIIR-SSQTLSDDHCQYFLY 115
Query: 62 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSF----VGTPYWM 117
+LRGL Y+HS +HRD+K N+LL +K+ DFG A F V T ++
Sbjct: 116 QLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYR 175
Query: 118 APEVILAMDEGQYDGKVDVWSLG 140
APE++L E Y +DVWS+G
Sbjct: 176 APELLLNCSE--YTTAIDVWSVG 196
Score = 40.8 bits (96), Expect = 0.002
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+LRGL Y+HS +HRD+K N+LL +K+
Sbjct: 117 LLRGLKYIHSANVLHRDLKPSNLLLNANCDLKI 149
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK4
partners with all three D-type cyclins (D1, D2, and D3)
and is also regulated by INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein and plays a
role in regulating the early G1 phase of the cell cycle.
It is expressed ubiquitously and is localized in the
nucleus. CDK4 also shows kinase activity towards Smad3,
a signal transducer of transforming growth factor
(TGF)-beta signaling which modulates transcription and
plays a role in cell proliferation and apoptosis. CDK4
is inhibited by the p21 inhibitor and is specifically
mutated in human melanoma.
Length = 288
Score = 93.9 bits (233), Expect = 5e-21
Identities = 74/236 (31%), Positives = 113/236 (47%), Gaps = 39/236 (16%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLK--- 220
+E + EIG G++G VY AR S VA+K + + + + +E+ L++L+
Sbjct: 2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTV-REVALLKRLEAFD 60
Query: 221 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQ-LKCFTEH 279
HPN + +M+ C S +D RE V + + Q L+ + +
Sbjct: 61 HPNIVR-------------LMDVCATSRTD--------RETKVTLVFEHVDQDLRTYLD- 98
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
+V L E I + LRGL++LH+ +HRD+K NIL+T G VKLADF
Sbjct: 99 ------KVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADF 152
Query: 340 GSASI---KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP 392
G A I + V T ++ APEV+L + Y VD+WS+G E+ RKP
Sbjct: 153 GLARIYSCQMALTPVVVTLWYRAPEVLL---QSTYATPVDMWSVGCIFAEMFRRKP 205
Score = 68.8 bits (168), Expect = 1e-12
Identities = 50/142 (35%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 8 LRQLKHPNTIEYRG-CYL----RDHTAWLVMEYCLGSASDIIEVHKRP-LKEEEIAAICS 61
L HPN + C R+ LV E+ ++ P L E I +
Sbjct: 56 LEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMR 115
Query: 62 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI---KCPANSFVGTPYWMA 118
LRGL++LH+ +HRD+K NIL+T G VKLADFG A I + V T ++ A
Sbjct: 116 QFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQMALTPVVVTLWYRA 175
Query: 119 PEVILAMDEGQYDGKVDVWSLG 140
PEV+L + Y VD+WS+G
Sbjct: 176 PEVLL---QSTYATPVDMWSVG 194
Score = 42.3 bits (99), Expect = 7e-04
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 636 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
L E I + LRGL++LH+ +HRD+K NIL+T G VKL
Sbjct: 105 LPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKL 149
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 11. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 11 (Nek11)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek11 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek11 is involved, through direct
phosphorylation, in regulating the degradation of Cdc25A
(Cell Division Cycle 25 homolog A), which plays a role
in cell cycle progression and in activating cyclin
dependent kinases. Nek11 is activated by CHK1
(CHeckpoint Kinase 1) and may be involved in the G2/M
checkpoint. Nek11 may also play a role in the S-phase
checkpoint as well as in DNA replication and genotoxic
stress responses.
Length = 260
Score = 93.1 bits (231), Expect = 5e-21
Identities = 71/284 (25%), Positives = 124/284 (43%), Gaps = 41/284 (14%)
Query: 168 REIGHGSFGAVYYA---RCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
+ +G GSFG VY + + + +K++ +G+ + +E + L +L HP
Sbjct: 6 QRLGKGSFGTVYLVKDKKAVAEERLKVLKEIP-VGELNPNETVQANQEAQLLSKLDHPAI 64
Query: 225 IEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
+++ +L ++ EYC G D +L++LK + +
Sbjct: 65 VKFHASFLERDAFCIITEYCEGRDLD-----------------CKLEELKHTGKTLS--- 104
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI 344
E ++ +L G++Y+H +HRD+KA NI L + +K+ DFG + +
Sbjct: 105 ---------ENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFL-KNNLLKIGDFGVSRL 154
Query: 345 ---KCP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAM 400
C A +F GTPY+M+PE A+ YD K D+WSLG E+ + N +
Sbjct: 155 LMGSCDLATTFTGTPYYMSPE---ALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFL 211
Query: 401 SALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSAL 444
S + I + TP L + + +I + K P +A L
Sbjct: 212 SVVLRIVEGPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEIL 255
Score = 83.8 bits (207), Expect = 9e-18
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 12/144 (8%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASD--IIEVHK--RPLKEEEIAAIC 60
+ LL +L HP +++ +L ++ EYC G D + E+ + L E ++
Sbjct: 53 AQLLSKLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWF 112
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI---KCP-ANSFVGTPYW 116
+L G++Y+H +HRD+KA NI L + +K+ DFG + + C A +F GTPY+
Sbjct: 113 IQLLLGVHYMHQRRILHRDLKAKNIFL-KNNLLKIGDFGVSRLLMGSCDLATTFTGTPYY 171
Query: 117 MAPEVILAMDEGQYDGKVDVWSLG 140
M+PE A+ YD K D+WSLG
Sbjct: 172 MSPE---ALKHQGYDSKSDIWSLG 192
Score = 33.8 bits (77), Expect = 0.27
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 616 LVMEYCLGSASD--IIEVHK--RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
++ EYC G D + E+ + L E ++ +L G++Y+H +HRD+KA NI
Sbjct: 79 IITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIF 138
Query: 672 L 672
L
Sbjct: 139 L 139
>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 5.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 5 (CDK5) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK5 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK5
is unusual in that it is regulated by non-cyclin
proteins, p35 and p39. It is highly expressed in the
nervous system and is critical in normal neural
development and function. It plays a role in neuronal
migration and differentiation, and is also important in
synaptic plasticity and learning. CDK5 also participates
in protecting against cell death and promoting
angiogenesis. Impaired CDK5 activity is implicated in
Alzheimer's disease, amyotrophic lateral sclerosis,
Parkinson's disease, Huntington's disease and acute
neuronal injury.
Length = 284
Score = 93.3 bits (232), Expect = 7e-21
Identities = 90/331 (27%), Positives = 138/331 (41%), Gaps = 57/331 (17%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+E L +IG G++G V+ A+ + EIVA+K++ L + L+EI L++LKH N
Sbjct: 2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVR-LDDDDEGVPSSALREICLLKELKHKN 60
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ D LV EYC D Q LK +
Sbjct: 61 IVRLYDVLHSDKKLTLVFEYC-----D--------------------QDLKKY------- 88
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA- 342
F+ + E + + +L+GL + HS +HRD+K N+L+ + G +KLADFG A
Sbjct: 89 -FDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLAR 147
Query: 343 SIKCPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNA 399
+ P + V T ++ P+V+ Y +D+WS G ELA P F N
Sbjct: 148 AFGIPVRCYSAEVVTLWYRPPDVLFGAK--LYSTSIDMWSAGCIFAELANAGRPLFPGND 205
Query: 400 MS-ALYHI-AQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQS 457
+ L I TP +S W + + PY A ++L ++ P L +
Sbjct: 206 VDDQLKRIFRLLGTPTEES--WPGVSKLPDY----KPYPMYPATTSLVNV----VPKL-N 254
Query: 458 SDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
S D + L NP R S+ L H
Sbjct: 255 STGRDLLQNL----LVCNPVQRISAEEALQH 281
Score = 73.2 bits (180), Expect = 4e-14
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
LL++LKH N + D LV EYC + + E + + +L+
Sbjct: 51 CLLKELKHKNIVRLYDVLHSDKKLTLVFEYCDQDLKKYFDSCNGDIDPEIVKSFMFQLLK 110
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSF---VGTPYWMAPEV 121
GL + HS +HRD+K N+L+ + G +KLADFG A + P + V T ++ P+V
Sbjct: 111 GLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDV 170
Query: 122 ILAMDEGQYDGKVDVWSLG 140
+ Y +D+WS G
Sbjct: 171 LFGAK--LYSTSIDMWSAG 187
Score = 38.2 bits (89), Expect = 0.011
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+L+GL + HS +HRD+K N+L+ + G +KL
Sbjct: 108 LLKGLAFCHSHNVLHRDLKPQNLLINKNGELKL 140
>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like
Protein Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, fungal Rim15-like kinases,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include Saccharomyces
cerevisiae Rim15, Schizosaccharomyces pombe cek1, and
similar fungal proteins. They contain a central
catalytic domain, which contains an insert relative to
MAST kinases. In addition, Rim15 contains a C-terminal
signal receiver (REC) domain while cek1 contains an
N-terminal PAS domain. Rim15 (or Rim15p) functions as a
regulator of meiosis. It acts as a downstream effector
of PKA and regulates entry into stationary phase (G0).
Thus, it plays a crucial role in regulating yeast
proliferation, differentiation, and aging. Cek1 may
facilitate progression of mitotic anaphase.
Length = 260
Score = 92.2 bits (229), Expect = 9e-21
Identities = 63/239 (26%), Positives = 99/239 (41%), Gaps = 38/239 (15%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLR-QLKHPNTI 225
L+ I G+FG+VY A+ + + AIK + + ++ E + Q + P
Sbjct: 1 LKPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVA 60
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
+ + +LVMEY G + ++ +G
Sbjct: 61 KLYYSFQSKDYLYLVMEYLNGGDCASL----------IKTLG------------------ 92
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK 345
L E+ + V+ G+ LH G IHRD+K N+L+ +TG +KL DFG +
Sbjct: 93 -----GLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNG 147
Query: 346 CPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMSALY 404
FVGTP ++APE IL + + D D WSLG E PP F+ A++
Sbjct: 148 LENKKFVGTPDYLAPETILGVGD---DKMSDWWSLGCVIFEFLFGYPP-FHAETPDAVF 202
Score = 85.6 bits (212), Expect = 2e-18
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 19/150 (12%)
Query: 30 WLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 89
+LVMEY G + L E+ + V+ G+ LH G IHRD+K N+L+ +
Sbjct: 73 YLVMEYLNGGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQ 132
Query: 90 TGTVKLADFGSASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITPGSLKDP 149
TG +KL DFG + FVGTP ++APE IL + + D D WSLG
Sbjct: 133 TGHLKLTDFGLSRNGLENKKFVGTPDYLAPETILGVGD---DKMSDWWSLGCV------- 182
Query: 150 EIAEL------FDKEDPEKIFEDL--REIG 171
I E F E P+ +F+++ R I
Sbjct: 183 -IFEFLFGYPPFHAETPDAVFDNILSRRIN 211
Score = 46.7 bits (111), Expect = 2e-05
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LVMEY G + L E+ + V+ G+ LH G IHRD+K N+L+ +T
Sbjct: 74 LVMEYLNGGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQT 133
Query: 676 GTVKL 680
G +KL
Sbjct: 134 GHLKL 138
>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Bypass
UAS Requirement 1 and similar proteins.
Serine/Threonine Kinases (STKs), Bypass UAS Requirement
1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
BUR1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. BUR1, also called
SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK)
that is functionally equivalent to mammalian CDK9. It
associates with the cyclin BUR2. BUR genes were
orginally identified in a genetic screen as factors
involved in general transcription. The BUR1/BUR2 complex
phosphorylates the C-terminal domain of RNA polymerase
II. In addition, this complex regulates histone
modification by phosporylating Rad6 and mediating the
association of the Paf1 complex with chromatin.
Length = 311
Score = 92.4 bits (230), Expect = 2e-20
Identities = 77/255 (30%), Positives = 114/255 (44%), Gaps = 65/255 (25%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKK-MSYLGKQCAEKWADILKEIRFLRQLKHP 222
+E L ++G G+FG VY AR + + +VA+KK + + K A L+EI+ L++LKHP
Sbjct: 10 YEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITA--LREIKILKKLKHP 67
Query: 223 N-------TIEYRGCYLRDH-TAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLK 274
N +E R + ++V Y M + L L
Sbjct: 68 NVVPLIDMAVERPDKSKRKRGSVYMVTPY----------------------MDHDLSGL- 104
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
L N V L E +I +L G+NYLH +HRD+KA NIL+ G +
Sbjct: 105 -------LENPSVK---LTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGIL 154
Query: 335 KLADFGSASI--KCPAN-------------SFVGTPYWMAPEVILAMDEGQYDGKVDVWS 379
K+ADFG A P N + V T ++ PE++L E +Y VD+W
Sbjct: 155 KIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLG--ERRYTTAVDIW- 211
Query: 380 LGITCI--ELAERKP 392
GI C+ E+ R+P
Sbjct: 212 -GIGCVFAEMFTRRP 225
Score = 73.1 bits (180), Expect = 7e-14
Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 25/158 (15%)
Query: 6 SLLRQLKHPN-------TIEYRGCYLRDH-TAWLVMEYCLGSASDIIEVHKRPLKEEEIA 57
+L++LKHPN +E R + ++V Y S ++E L E +I
Sbjct: 59 KILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVKLTESQIK 118
Query: 58 AICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI--KCPAN------- 108
+L G+NYLH +HRD+KA NIL+ G +K+ADFG A P N
Sbjct: 119 CYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGG 178
Query: 109 ------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
+ V T ++ PE++L E +Y VD+W +G
Sbjct: 179 GTRKYTNLVVTRWYRPPELLLG--ERRYTTAVDIWGIG 214
Score = 44.6 bits (106), Expect = 1e-04
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 636 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
L E +I +L G+NYLH +HRD+KA NIL+ G +K+
Sbjct: 112 LTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKI 156
>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent
protein Kinase 8-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK8-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK8, CDC2L6, and similar proteins. CDK8
functions as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDC2L6 also associates with
Mediator in complexes lacking CDK8. In VP16-dependent
transcriptional activation, CDK8 and CDC2L6 exerts
opposing effects by positive and negative regulation,
respectively, in similar conditions.
Length = 316
Score = 92.3 bits (230), Expect = 2e-20
Identities = 83/366 (22%), Positives = 140/366 (38%), Gaps = 93/366 (25%)
Query: 163 IFEDLREIGHGSFGAVYYARCLVSR--EIVAIKKMSYLGKQCAEKWADI----LKEIRFL 216
+E IG G++G VY A+ + + AIKK K E++ I +EI L
Sbjct: 1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKF----KGDKEQYTGISQSACREIALL 56
Query: 217 RQLKHPNTIEYRGCYLRDHT--AWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLK 274
R+LKH N + +L +L+ +Y
Sbjct: 57 RELKHENVVSLVEVFLEHADKSVYLLFDYA------------------------------ 86
Query: 275 CFTEH--FALFNFEVHKR--PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT- 329
EH + + F + + + ++ +L G++YLHS +HRD+K NIL+
Sbjct: 87 ---EHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMG 143
Query: 330 ---ETGTVKLADFGSASI-----KCPA--NSFVGTPYWMAPEVILAMDEGQYDGKVDVWS 379
E G VK+ D G A + K A + V T ++ APE++L Y +D+W+
Sbjct: 144 EGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGAR--HYTKAIDIWA 201
Query: 380 LGITCI--ELAERKPPYFNMNA---MSALYHIAQND-------TPCLQSSDWSVIKTI-- 425
+G CI EL +P + A S + Q + TP + DW IK +
Sbjct: 202 IG--CIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEK--DWPDIKKMPE 257
Query: 426 --SSTAERKPPYFNMNAMSALYHIAQN-DTPCLQSSDWSDTFAHFVSSCLAKNPADRPSS 482
+ + K + N+++ + D+ + L +P R ++
Sbjct: 258 YDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGF----------DLLRKLLEYDPTKRITA 307
Query: 483 GRLLTH 488
L H
Sbjct: 308 EEALEH 313
Score = 83.5 bits (207), Expect = 2e-17
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 30/188 (15%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHT--AWLVMEYCLGSASDIIEVHKRP----LKEEEIAAI 59
+LLR+LKH N + +L +L+ +Y II+ H++ + + ++
Sbjct: 54 ALLRELKHENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSL 113
Query: 60 CSGVLRGLNYLHSLGRIHRDVKAGNILLT----ETGTVKLADFGSASI-----KCPA--N 108
+L G++YLHS +HRD+K NIL+ E G VK+ D G A + K A +
Sbjct: 114 LWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLD 173
Query: 109 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLG-----------ITPGSLKDPEIAELFDK 157
V T ++ APE++L Y +D+W++G I G + + F +
Sbjct: 174 PVVVTIWYRAPELLLGAR--HYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQR 231
Query: 158 EDPEKIFE 165
+ E+IFE
Sbjct: 232 DQLERIFE 239
Score = 42.7 bits (101), Expect = 5e-04
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLT----ETGTVK 679
+L G++YLHS +HRD+K NIL+ E G VK
Sbjct: 117 ILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVK 152
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of
Phototropin-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Phototropin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
phototropin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Included in this subfamily
are plant phototropins and predominantly uncharacterized
fungal STKs whose catalytic domains resemble the
phototropin kinase domain. One protein from Neurospora
crassa is called nrc-2. Phototropins are blue-light
receptors that control responses such as phototropism,
stromatal opening, and chloroplast movement in order to
optimize the photosynthetic efficiency of plants. They
are light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 91.2 bits (227), Expect = 7e-20
Identities = 74/263 (28%), Positives = 102/263 (38%), Gaps = 79/263 (30%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAE---KWADILKEIRFLRQLK 220
F+ ++ +G G G V+ R + ++ A+K + K+ K +L E L L
Sbjct: 3 FKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLD---KKEMIKRNKVKRVLTEQEILATLD 59
Query: 221 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRL---QQLKCFT 277
HP + + LVM+YC G E RL Q KC +
Sbjct: 60 HPFLPTLYASFQTETYLCLVMDYCPGG------------ELF------RLLQRQPGKCLS 101
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
E A F AA VL L YLH LG ++RD+K NILL E+G + L+
Sbjct: 102 EEVARF-------------YAA---EVLLALEYLHLLGIVYRDLKPENILLHESGHIMLS 145
Query: 338 DF-------------------GSAS----------IKCPA----NSFVGTPYWMAPEVIL 364
DF GS NSFVGT ++APEVI
Sbjct: 146 DFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVIS 205
Query: 365 AMDEGQYDGKVDVWSLGITCIEL 387
+G + VD W+LGI E+
Sbjct: 206 G--DG-HGSAVDWWTLGILLYEM 225
Score = 77.3 bits (191), Expect = 3e-15
Identities = 55/174 (31%), Positives = 73/174 (41%), Gaps = 48/174 (27%)
Query: 8 LRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVH----KRP---LKEEEIAAIC 60
L L HP + + LVM+YC G E+ ++P L EE
Sbjct: 55 LATLDHPFLPTLYASFQTETYLCLVMDYCPGG-----ELFRLLQRQPGKCLSEEVARFYA 109
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF-------------------GSA 101
+ VL L YLH LG ++RD+K NILL E+G + L+DF GS
Sbjct: 110 AEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSR 169
Query: 102 S----------IKCPA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
NSFVGT ++APEVI +G + VD W+LGI
Sbjct: 170 RSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISG--DG-HGSAVDWWTLGI 220
Score = 50.7 bits (122), Expect = 1e-06
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 616 LVMEYCLGSASDIIEVH----KRP---LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAG 668
LVM+YC G E+ ++P L EE + VL L YLH LG ++RD+K
Sbjct: 78 LVMDYCPGG-----ELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPE 132
Query: 669 NILLTETGTVKL 680
NILL E+G + L
Sbjct: 133 NILLHESGHIML 144
>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase (JNK) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others. They
are also essential regulators of physiological and
pathological processes and are involved in the
pathogenesis of several diseases such as diabetes,
atherosclerosis, stroke, Parkinson's and Alzheimer's.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3) that are alternatively spliced to produce at
least 10 isoforms. JNKs are specifically activated by
the MAPK kinases MKK4 and MKK7, which are in turn
activated by upstream MAPK kinase kinases as a result of
different stimuli including stresses such as ultraviolet
(UV) irradiation, hyperosmolarity, heat shock, or
cytokines. JNKs activate a large number of different
substrates based on specific stimulus, cell type, and
cellular condition, and may be implicated in seemingly
contradictory functions.
Length = 353
Score = 91.7 bits (228), Expect = 7e-20
Identities = 72/236 (30%), Positives = 105/236 (44%), Gaps = 57/236 (24%)
Query: 162 KIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSY-LGKQCAEKWADILKEIRFLRQLK 220
K +++L+ IG G+ G V A V+ + VAIKK+S K A +E+ ++ +
Sbjct: 16 KRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRA--YRELVLMKLVN 73
Query: 221 HPNTIEYRGCYLRDHT------AWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLK 274
H N I + + +LVME L A+ + +V I+ + E M L Q+
Sbjct: 74 HKNIIGLLNVFTPQKSLEEFQDVYLVME--LMDAN-LCQV--IQMDLDHERMSYLLYQML 128
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
C G+ +LHS G IHRD+K NI++ T+
Sbjct: 129 C-------------------------------GIKHLHSAGIIHRDLKPSNIVVKSDCTL 157
Query: 335 KLADFGSASIKCPANSFVGTP-----YWMAPEVILAMDEGQYDGKVDVWSLGITCI 385
K+ DFG A SF+ TP Y+ APEVIL M Y VD+WS+G CI
Sbjct: 158 KILDFGLARTA--GTSFMMTPYVVTRYYRAPEVILGMG---YKENVDIWSVG--CI 206
Score = 83.6 bits (207), Expect = 3e-17
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 19/145 (13%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHT------AWLVMEYCLGSASDIIEVHKRPLKEEEIAAIC 60
L++ + H N I + + +LVME L A+ + +V + L E ++ +
Sbjct: 68 LMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVME--LMDAN-LCQVIQMDLDHERMSYLL 124
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTP-----Y 115
+L G+ +LHS G IHRD+K NI++ T+K+ DFG A SF+ TP Y
Sbjct: 125 YQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA--GTSFMMTPYVVTRY 182
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLG 140
+ APEVIL M Y VD+WS+G
Sbjct: 183 YRAPEVILGMG---YKENVDIWSVG 204
Score = 40.9 bits (96), Expect = 0.002
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 14/82 (17%)
Query: 611 LFSPQ----------LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGR 660
+F+PQ LVME L A+ + +V + L E ++ + +L G+ +LHS G
Sbjct: 83 VFTPQKSLEEFQDVYLVME--LMDAN-LCQVIQMDLDHERMSYLLYQMLCGIKHLHSAGI 139
Query: 661 IHRDVKAGNILLTETGTVK-LD 681
IHRD+K NI++ T+K LD
Sbjct: 140 IHRDLKPSNIVVKSDCTLKILD 161
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in
approximately 50% of renal cell carcinomas (RCC) and is
a potential target for immunotherapy. MOK is stabilized
by its association with the HSP90 molecular chaperone.
It is induced by the transcription factor Cdx2 and may
be involved in regulating intestinal epithelial
development and differentiation.
Length = 282
Score = 88.9 bits (221), Expect = 2e-19
Identities = 66/233 (28%), Positives = 104/233 (44%), Gaps = 46/233 (19%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADI--LKEIRFLRQLK-HPN 223
L +IG G+F V A+ + + AIK M K+ + + L+EI+ LR+L HPN
Sbjct: 4 LGKIGEGTFSEVLKAQSRKTGKYYAIKCM----KKHFKSLEQVNNLREIQALRRLSPHPN 59
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
I+ + E + RL L L+
Sbjct: 60 ---------------------------ILRLI----EVLFDRKTGRLA-LVFELMDMNLY 87
Query: 284 NF-EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA 342
+ KRPL E+ + + +L+ L+++H G HRD+K NIL+ + +KLADFGS
Sbjct: 88 ELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSC 146
Query: 343 -SI--KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP 392
I K P ++ T ++ APE +L G Y K+D+W++G E+ P
Sbjct: 147 RGIYSKPPYTEYISTRWYRAPECLLTD--GYYGPKMDIWAVGCVFFEILSLFP 197
Score = 78.5 bits (194), Expect = 7e-16
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 9/140 (6%)
Query: 7 LLRQLK-HPNTIEYRGCYLRDHTA--WLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGV 63
LR+L HPN + T LV E + ++I+ KRPL E+ + + +
Sbjct: 50 ALRRLSPHPNILRLIEVLFDRKTGRLALVFELMDMNLYELIKGRKRPLPEKRVKSYMYQL 109
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SI--KCPANSFVGTPYWMAPE 120
L+ L+++H G HRD+K NIL+ + +KLADFGS I K P ++ T ++ APE
Sbjct: 110 LKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPYTEYISTRWYRAPE 168
Query: 121 VILAMDEGQYDGKVDVWSLG 140
+L G Y K+D+W++G
Sbjct: 169 CLLTD--GYYGPKMDIWAVG 186
Score = 46.5 bits (111), Expect = 3e-05
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 582 QAHNRHHHHHPVTHLSQHSYNNNNSNYSSLFSPQLVMEYCLGSASDIIEVHKRPLKEEEI 641
QA R H + L + ++ + LV E + ++I+ KRPL E+ +
Sbjct: 49 QALRRLSPHPNILRLIEVLFDRKTGRLA------LVFELMDMNLYELIKGRKRPLPEKRV 102
Query: 642 AAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
+ +L+ L+++H G HRD+K NIL+
Sbjct: 103 KSYMYQLLKSLDHMHRNGIFHRDIKPENILI 133
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for
activity, while atypical PKCs only require PS. PKCs
phosphorylate and modify the activities of a wide
variety of cellular proteins including receptors,
enzymes, cytoskeletal proteins, transcription factors,
and other kinases. They play a central role in signal
transduction pathways that regulate cell migration and
polarity, proliferation, differentiation, and apoptosis.
Also included in this subfamily are the PKC-like
proteins, called PKNs.
Length = 318
Score = 89.4 bits (222), Expect = 2e-19
Identities = 68/239 (28%), Positives = 101/239 (42%), Gaps = 55/239 (23%)
Query: 168 REIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADI---LKEIRFLRQL-KHPN 223
+ +G GSFG V A + E+ A+K L K + D+ + E R L KHP
Sbjct: 1 KVLGKGSFGKVLLAELKGTDELYAVK---VLKKDVILQDDDVECTMTEKRVLALAGKHPF 57
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ C+ + VMEY G D++ FH+ Q+ F E A F
Sbjct: 58 LTQLHSCFQTKDRLFFVMEYVNGG--DLM--------FHI-------QRSGRFDEPRARF 100
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
A ++ GL +LH G I+RD+K N+LL G +K+ADFG
Sbjct: 101 --------------YAAE--IVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFG--- 141
Query: 344 IKCPAN--------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
C +F GTP ++APE++ Y VD W+LG+ E+ + P+
Sbjct: 142 -MCKEGILGGVTTSTFCGTPDYIAPEILSYQP---YGPAVDWWALGVLLYEMLAGQSPF 196
Score = 83.6 bits (207), Expect = 2e-17
Identities = 63/228 (27%), Positives = 95/228 (41%), Gaps = 47/228 (20%)
Query: 12 KHPNTIEYRGCYLRDHTAWLVMEYCLGS--ASDIIEVHKRPLKEEEIAAICSGVLRGLNY 69
KHP + C+ + VMEY G I + A ++ GL +
Sbjct: 54 KHPFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAAE--IVLGLQF 111
Query: 70 LHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN--------SFVGTPYWMAPEV 121
LH G I+RD+K N+LL G +K+ADFG C +F GTP ++APE+
Sbjct: 112 LHERGIIYRDLKLDNVLLDSEGHIKIADFG----MCKEGILGGVTTSTFCGTPDYIAPEI 167
Query: 122 ILAMDEGQYDGKVDVWSLGITPGSLKDPEIAEL------FDKEDPEKIFEDLREIGHGSF 175
+ Y VD W+LG+ + E+ F+ +D +++F+ + E
Sbjct: 168 LSYQP---YGPAVDWWALGVL--------LYEMLAGQSPFEGDDEDELFQSILE------ 210
Query: 176 GAVYYARCLVSREIVAIKKMSYLGKQ------CAEKWADILKEIRFLR 217
V Y R L S+E +I K S+L K C +K F R
Sbjct: 211 DEVRYPRWL-SKEAKSILK-SFLTKNPEKRLGCLPTGEQDIKGHPFFR 256
Score = 44.7 bits (106), Expect = 1e-04
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 617 VMEYCLGS--ASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
VMEY G I + A ++ GL +LH G I+RD+K N+LL
Sbjct: 74 VMEYVNGGDLMFHIQRSGRFDEPRARFYAAE--IVLGLQFLHERGIIYRDLKLDNVLLDS 131
Query: 675 TGTVKL 680
G +K+
Sbjct: 132 EGHIKI 137
>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), cAMP-dependent protein kinase (PKA) subfamily,
PRKX-like kinases, catalytic (c) subunit. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include human PRKX (X
chromosome-encoded protein kinase), Drosophila DC2, and
similar proteins. PRKX is present in many tissues
including fetal and adult brain, kidney, and lung. The
PRKX gene is located in the Xp22.3 subregion and has a
homolog called PRKY on the Y chromosome. An abnormal
interchange between PRKX aand PRKY leads to the sex
reversal disorder of XX males and XY females. PRKX is
implicated in granulocyte/macrophage lineage
differentiation, renal cell epithelial migration, and
tubular morphogenesis in the developing kidney.
Length = 291
Score = 88.6 bits (220), Expect = 3e-19
Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 37/236 (15%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
E ++ +G G+FG V+ R +S A+K M+ ++ + E R L+++ HP
Sbjct: 3 LERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPF 62
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
I +++MEY G + + L+ F+ LF
Sbjct: 63 IIRLFWTEHDQRFLYMLMEYVPGGE-----------------LFSYLRNSGRFSNSTGLF 105
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA- 342
EI +C+ L YLHS ++RD+K NILL + G +KL DFG A
Sbjct: 106 ---------YASEI--VCA-----LEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAK 149
Query: 343 SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMN 398
++ + GTP ++APEVI + + VD W+LGI E+ PP+F+ N
Sbjct: 150 KLRDRTWTLCGTPEYLAPEVIQSKGHNK---AVDWWALGILIYEMLVGYPPFFDDN 202
Score = 65.9 bits (161), Expect = 1e-11
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
+L+++ HP I +++MEY G + S ++
Sbjct: 53 RVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVC 112
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSFVGTPYWMAPEVILA 124
L YLHS ++RD+K NILL + G +KL DFG A ++ + GTP ++APEVI +
Sbjct: 113 ALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQS 172
Query: 125 MDEGQYDGKVDVWSLGI 141
+ VD W+LGI
Sbjct: 173 KGHNK---AVDWWALGI 186
Score = 35.9 bits (83), Expect = 0.060
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 652 LNYLHSLGRIHRDVKAGNILLTETGTVKL 680
L YLHS ++RD+K NILL + G +KL
Sbjct: 114 LEYLHSKEIVYRDLKPENILLDKEGHIKL 142
>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
Length = 335
Score = 89.4 bits (222), Expect = 4e-19
Identities = 67/258 (25%), Positives = 101/258 (39%), Gaps = 77/258 (29%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKM-------------SYLGKQCAEKWADILKEIRFL 216
+G G++G V A ++ +IVAIKK+ +G C + L+E++ +
Sbjct: 17 LGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVG-MCGIHFT-TLRELKIM 74
Query: 217 RQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRL--QQLK 274
++KH N + Y+ LVM+ ASD+ +V ++R+ RL Q+K
Sbjct: 75 NEIKHENIMGLVDVYVEGDFINLVMDIM---ASDLKKV--VDRKI-------RLTESQVK 122
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
C I +L GLN LH +HRD+ NI + G
Sbjct: 123 C------------------------ILLQILNGLNVLHKWYFMHRDLSPANIFINSKGIC 158
Query: 335 KLADFGSASIKCPANSFVGTPYW----------MAPEVI--------LAMDEGQYDGKVD 376
K+ADFG A M +V+ L M +Y VD
Sbjct: 159 KIADFGLAR--RYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVD 216
Query: 377 VWSLGITCI--ELAERKP 392
+WS+G CI EL KP
Sbjct: 217 MWSVG--CIFAELLTGKP 232
Score = 74.8 bits (184), Expect = 2e-14
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
++ ++KH N + Y+ LVM+ +++ R L E ++ I +L G
Sbjct: 73 IMNEIKHENIMGLVDVYVEGDFINLVMDIMASDLKKVVDRKIR-LTESQVKCILLQILNG 131
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPYW---------- 116
LN LH +HRD+ NI + G K+ADFG A
Sbjct: 132 LNVLHKWYFMHRDLSPANIFINSKGICKIADFGLAR--RYGYPPYSDTLSKDETMQRREE 189
Query: 117 MAPEVI--------LAMDEGQYDGKVDVWSLG 140
M +V+ L M +Y VD+WS+G
Sbjct: 190 MTSKVVTLWYRAPELLMGAEKYHFAVDMWSVG 221
Score = 45.1 bits (107), Expect = 9e-05
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LVM+ +++ R L E ++ I +L GLN LH +HRD+ NI +
Sbjct: 97 LVMDIMASDLKKVVDRKIR-LTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSK 155
Query: 676 GTVKL 680
G K+
Sbjct: 156 GICKI 160
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), Extracellular
signal-regulated kinases 1 and 2 (ERK1/2) and Fus3
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
the mitogen-activated protein kinases (MAPKs) ERK1,
ERK2, baker's yeast Fus3, and similar proteins. MAPK
pathways are important mediators of cellular responses
to extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate in
transcriptional regulation of many cellular processes.
They regulate cell growth, cell proliferation, and cell
cycle progression from G1 to S phase. Although the
distinct roles of ERK1 and ERK2 have not been fully
determined, it is known that ERK2 can maintain most
functions in the absence of ERK1, and that the deletion
of ERK2 is embryonically lethal. The MAPK, Fus3,
regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 88.9 bits (221), Expect = 4e-19
Identities = 70/239 (29%), Positives = 105/239 (43%), Gaps = 56/239 (23%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQ--CAEKWADILKEIRFLRQLKH 221
+++L IG G++G V A + VAIKK+S Q C L+EI+ LR+ KH
Sbjct: 7 YQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRT----LREIKILRRFKH 62
Query: 222 PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
N II + I R E N + ++ E
Sbjct: 63 EN---------------------------IIGILDIIRPPSFESF-NDVYIVQELMET-- 92
Query: 282 LFNFEVHK----RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
+++K + L + I +LRGL Y+HS +HRD+K N+LL +K+
Sbjct: 93 ----DLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKIC 148
Query: 338 DFGSASIKCPAN-------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
DFG A I P + +V T ++ APE++L Y +D+WS+G CI LAE
Sbjct: 149 DFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKG--YTKAIDIWSVG--CI-LAE 202
Score = 68.9 bits (169), Expect = 2e-12
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN-------SFVGTPY 115
+LRGL Y+HS +HRD+K N+LL +K+ DFG A I P + +V T +
Sbjct: 115 ILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRW 174
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLG 140
+ APE++L Y +D+WS+G
Sbjct: 175 YRAPEIMLNSKG--YTKAIDIWSVG 197
Score = 41.9 bits (99), Expect = 8e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+LRGL Y+HS +HRD+K N+LL +K+
Sbjct: 115 ILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKI 147
>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 6.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 6 (CDK6) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK6
is regulated by D-type cyclins and INK4 inhibitors. It
is active towards the retinoblastoma (pRb) protein,
implicating it to function in regulating the early G1
phase of the cell cycle. It is expressed ubiquitously
and is localized in the cytoplasm. It is also present in
the ruffling edge of spreading fibroblasts and may play
a role in cell spreading. It binds to the p21 inhibitor
without any effect on its own activity and it is
overexpressed in squamous cell carcinomas and
neuroblastomas. CDK6 has also been shown to inhibit cell
differentiation in many cell types.
Length = 290
Score = 88.1 bits (218), Expect = 5e-19
Identities = 88/337 (26%), Positives = 143/337 (42%), Gaps = 64/337 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSR-EIVAIKKMSYLGKQCAEKWADI--LKEIRFLRQLK 220
+E + EIG G++G V+ AR L + VA+K++ Q E+ + ++E+ LR L+
Sbjct: 3 YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRV---QTGEEGMPLSTIREVAVLRHLE 59
Query: 221 ---HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
HPN + + + C S +D E HV+ Q L +
Sbjct: 60 TFEHPNVVR-------------LFDVCTVSRTDR-ETKLTLVFEHVD------QDLTTYL 99
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
+ +V + + E I + +LRGL++LHS +HRD+K NIL+T +G +KLA
Sbjct: 100 D-------KVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLA 152
Query: 338 DFGSA---SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
DFG A S + S V T ++ APEV+L + Y VD+WS+G E+ RKP +
Sbjct: 153 DFGLARIYSFQMALTSVVVTLWYRAPEVLL---QSSYATPVDLWSVGCIFAEMFRRKPLF 209
Query: 395 ---FNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQND 451
+++ + + + DW + A +
Sbjct: 210 RGSSDVDQLGKILDVIGLPGE----EDWPRDVALPRQAFHSKS----------AQPIEKF 255
Query: 452 TPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
D + + CL NPA R S+ L+H
Sbjct: 256 VT-----DIDELGKDLLLKCLTFNPAKRISAYSALSH 287
Score = 74.7 bits (183), Expect = 2e-14
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 15/147 (10%)
Query: 6 SLLRQLK---HPNTIE-YRGCYL----RDHTAWLVMEYCLGSASDIIEVHKRP-LKEEEI 56
++LR L+ HPN + + C + R+ LV E+ + ++ P + E I
Sbjct: 53 AVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETI 112
Query: 57 AAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SIKCPANSFVGT 113
+ +LRGL++LHS +HRD+K NIL+T +G +KLADFG A S + S V T
Sbjct: 113 KDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVT 172
Query: 114 PYWMAPEVILAMDEGQYDGKVDVWSLG 140
++ APEV+L + Y VD+WS+G
Sbjct: 173 LWYRAPEVLL---QSSYATPVDLWSVG 196
Score = 42.3 bits (99), Expect = 6e-04
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 639 EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
E I + +LRGL++LHS +HRD+K NIL+T +G +KL
Sbjct: 110 ETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKL 151
>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase
adapter protein beta. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) beta
subfamily, pseudokinase domain. The STRAD-beta subfamily
is part of a larger superfamily that includes the
catalytic domains of serine/threonine kinases (STKs),
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The pseudokinase domain shows similarity to
protein kinases but lacks crucial residues for catalytic
activity. STRAD forms a complex with the scaffolding
protein MO25, and the STK, LKB1, resulting in the
activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. STRAD-beta is also referred to as ALS2CR2
(Amyotrophic lateral sclerosis 2 chromosomal region
candidate gene 2 protein), since the human gene encoding
it is located within the juvenile ALS2 critical region
on chromosome 2q33-q34. It is not linked to the
development of ALS2.
Length = 328
Score = 88.9 bits (220), Expect = 5e-19
Identities = 91/353 (25%), Positives = 141/353 (39%), Gaps = 82/353 (23%)
Query: 169 EIGHG--SFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADIL-KEIRFLRQLKHPNTI 225
EIG G + +VY AR + +V ++ + C E+ L E+ +HPN +
Sbjct: 5 EIGRGFCNLTSVYLARHTPTGTLVTVRITDL--ENCTEEHLKALQNEVVLSHFFRHPNIM 62
Query: 226 EYRGCYLRDHTAWLV---MEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
+ W++ M Y GSA+ ++ + + EGM L
Sbjct: 63 TSWTVFTTGSWLWVISPFMAY--GSANSLL------KTYFPEGMSEAL------------ 102
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA 342
I I G LRGLNYLH G IHR++KA +IL++ G V L+ G +
Sbjct: 103 --------------IGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLS--GLS 146
Query: 343 SIKC--------------PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA 388
+ P S P W++PE +L D Y+ K D++S+GIT ELA
Sbjct: 147 HLYSLVRNGQKAKVVYDFPQFSTSVLP-WLSPE-LLRQDLYGYNVKSDIYSVGITACELA 204
Query: 389 ERKPPYFNMNAMSAL---------YHIAQNDTPC----LQSSDWSVIKTISSTAERKPPY 435
+ P+ +M L + PC +++S V I +
Sbjct: 205 TGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMT 264
Query: 436 FNMNAMSALYHIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
M + + TP S +S F + V CL ++P RPS+ LL+H
Sbjct: 265 QTMTS-------ERLRTP--SSKTFSPAFQNLVELCLQQDPEKRPSASSLLSH 308
Score = 66.1 bits (161), Expect = 1e-11
Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 24/154 (15%)
Query: 11 LKHPNTIEYRGCYLRDHTAWLV---MEYCLGSASDIIEVH-KRPLKEEEIAAICSGVLRG 66
+HPN + + W++ M Y GSA+ +++ + + E I I G LRG
Sbjct: 56 FRHPNIMTSWTVFTTGSWLWVISPFMAY--GSANSLLKTYFPEGMSEALIGNILFGALRG 113
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKC--------------PANSFVG 112
LNYLH G IHR++KA +IL++ G V L+ G + + P S
Sbjct: 114 LNYLHQNGYIHRNIKASHILISGDGLVSLS--GLSHLYSLVRNGQKAKVVYDFPQFSTSV 171
Query: 113 TPYWMAPEVILAMDEGQYDGKVDVWSLGITPGSL 146
P W++PE +L D Y+ K D++S+GIT L
Sbjct: 172 LP-WLSPE-LLRQDLYGYNVKSDIYSVGITACEL 203
Score = 51.1 bits (122), Expect = 1e-06
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 618 MEYCLGSASDIIEVH-KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 676
M Y GSA+ +++ + + E I I G LRGLNYLH G IHR++KA +IL++ G
Sbjct: 81 MAY--GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDG 138
Query: 677 TVKL 680
V L
Sbjct: 139 LVSL 142
>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Citron Rho-interacting kinase.
Serine/Threonine Kinases (STKs), Citron Rho-interacting
kinase (CRIK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CRIK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CRIK is also called citron kinase. It contains
a catalytic domain, a central coiled-coil domain, and a
C-terminal region containing a Rho-binding domain (RBD),
a zinc finger, and a pleckstrin homology (PH) domain, in
addition to other motifs. CRIK, an effector of the small
GTPase Rho, plays an important function during
cytokinesis and affects its contractile process.
CRIK-deficient mice show severe ataxia and epilepsy as a
result of abnormal cytokinesis and massive apoptosis in
neuronal precursors. A Down syndrome critical region
protein TTC3 interacts with CRIK and inhibits
CRIK-dependent neuronal differentiation and neurite
extension.
Length = 330
Score = 87.9 bits (218), Expect = 1e-18
Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 42/234 (17%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYRG 229
+G G FG V R + +I A+K M E + +E L P + +
Sbjct: 9 VGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQY 68
Query: 230 CYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEVHK 289
+ +LVMEY G G+ L L ++
Sbjct: 69 AFQDKDNLYLVMEYQPG--------------------GDLLSLLN------------RYE 96
Query: 290 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN 349
E+ + ++ ++ +H +G +HRD+K N+L+ TG +KLADFGSA+ + AN
Sbjct: 97 DQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAA-RLTAN 155
Query: 350 SFV------GTPYWMAPEVILAMD---EGQYDGKVDVWSLGITCIELAERKPPY 394
V GTP ++APEV+ M+ +G Y + D WSLG+ E+ + P+
Sbjct: 156 KMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPF 209
Score = 84.1 bits (208), Expect = 2e-17
Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 15/127 (11%)
Query: 27 HTAWLVMEYCLGSASDIIEV---HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAG 83
+LVMEY G D++ + ++ E+ + ++ ++ +H +G +HRD+K
Sbjct: 74 DNLYLVMEYQPGG--DLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPE 131
Query: 84 NILLTETGTVKLADFGSASIKCPANSFV------GTPYWMAPEVILAMD---EGQYDGKV 134
N+L+ TG +KLADFGSA+ + AN V GTP ++APEV+ M+ +G Y +
Sbjct: 132 NVLIDRTGHIKLADFGSAA-RLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVEC 190
Query: 135 DVWSLGI 141
D WSLG+
Sbjct: 191 DWWSLGV 197
Score = 45.6 bits (108), Expect = 7e-05
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 598 QHSYNNNNSNYSSLFSPQLVMEYCLGSASDIIEV---HKRPLKEEEIAAICSGVLRGLNY 654
Q+++ + ++ Y LVMEY G D++ + ++ E+ + ++ ++
Sbjct: 67 QYAFQDKDNLY-------LVMEYQPGG--DLLSLLNRYEDQFDEDMAQFYLAELVLAIHS 117
Query: 655 LHSLGRIHRDVKAGNILLTETGTVKL 680
+H +G +HRD+K N+L+ TG +KL
Sbjct: 118 VHQMGYVHRDIKPENVLIDRTGHIKL 143
>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the
Serine/Threonine Kinase, p38gamma Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38gamma subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38gamma subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38gamma, also called MAPK12, is predominantly
expressed in skeletal muscle. Unlike p38alpha and
p38beta, p38gamma is insensitive to pyridinylimidazoles.
It displays an antagonizing function compared to
p38alpha. p38gamma inhibits, while p38alpha stimulates,
c-Jun phosphorylation and AP-1 mediated transcription.
p38gamma also plays a role in the signaling between Ras
and the estrogen receptor and has been implicated to
increase cell invasion and breast cancer progression. In
Xenopus, p38gamma is critical in the meiotic maturation
of oocytes.
Length = 343
Score = 88.1 bits (218), Expect = 1e-18
Identities = 78/269 (28%), Positives = 117/269 (43%), Gaps = 52/269 (19%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+ DL+++G G++G V A + VAIKK+ Y Q +E+R L+ +KH N
Sbjct: 17 YRDLKQVGSGAYGTVCSALDRRTGAKVAIKKL-YRPFQSELFAKRAYRELRLLKHMKHEN 75
Query: 224 TIEYRGCYLRD------HTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
I + D H +LVM + MG L +L
Sbjct: 76 VIGLLDVFTPDLSLDRFHDFYLVMPF----------------------MGTDLGKLM--- 110
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
H++ L E+ I + +L+GL Y+H+ G IHRD+K GN+ + E +K+
Sbjct: 111 ---------KHEK-LSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKIL 160
Query: 338 DFGSA-SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
DFG A +V T ++ APEVIL Y VD+WS+G E+ KP +
Sbjct: 161 DFGLARQTDSEMTGYVVTRWYRAPEVILNW--MHYTQTVDIWSVGCIMAEMLTGKPLFKG 218
Query: 397 MNAMSALYHIAQ-NDTPC------LQSSD 418
+ + L I + TP LQS D
Sbjct: 219 HDHLDQLMEIMKVTGTPSKEFVQKLQSED 247
Score = 77.7 bits (191), Expect = 3e-15
Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 7 LLRQLKHPNTIEYRGCYLRD------HTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAIC 60
LL+ +KH N I + D H +LVM + +G+ + H++ L E+ I +
Sbjct: 67 LLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPF-MGTDLGKLMKHEK-LSEDRIQFLV 124
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSFVGTPYWMAP 119
+L+GL Y+H+ G IHRD+K GN+ + E +K+ DFG A +V T ++ AP
Sbjct: 125 YQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSEMTGYVVTRWYRAP 184
Query: 120 EVILAMDEGQYDGKVDVWSLG 140
EVIL Y VD+WS+G
Sbjct: 185 EVILNW--MHYTQTVDIWSVG 203
Score = 45.7 bits (108), Expect = 5e-05
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LVM + +G+ + H++ L E+ I + +L+GL Y+H+ G IHRD+K GN+ + E
Sbjct: 97 LVMPF-MGTDLGKLMKHEK-LSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNED 154
Query: 676 GTVKL 680
+K+
Sbjct: 155 CELKI 159
>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit;
Provisional.
Length = 329
Score = 87.6 bits (217), Expect = 1e-18
Identities = 68/246 (27%), Positives = 105/246 (42%), Gaps = 61/246 (24%)
Query: 164 FEDLREIGHGSFGAV----------YYA-RCLVSREIVAIKKMSYLGKQCAEKWADILKE 212
FE +G GSFG V YYA +CL REI+ +K++ + + +E
Sbjct: 20 FEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQH-----------VAQE 68
Query: 213 IRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQ 272
L +L HP + + ++ + ++E+ +G E H+ G
Sbjct: 69 KSILMELSHPFIVNMMCSFQDENRVYFLLEFVVGG----------ELFTHLRKAGR---- 114
Query: 273 LKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 332
F A F + ++ YLHS I+RD+K N+LL G
Sbjct: 115 ---FPNDVAKF----------------YHAELVLAFEYLHSKDIIYRDLKPENLLLDNKG 155
Query: 333 TVKLADFGSASIKCPANSFV--GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 390
VK+ DFG A K P +F GTP ++APEVI + G+ VD W++G+ E
Sbjct: 156 HVKVTDFGFAK-KVPDRTFTLCGTPEYLAPEVIQSKGHGK---AVDWWTMGVLLYEFIAG 211
Query: 391 KPPYFN 396
PP+F+
Sbjct: 212 YPPFFD 217
Score = 74.9 bits (184), Expect = 2e-14
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 12/144 (8%)
Query: 3 AGSSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSA--SDIIEVHKRPLKEEEIAAI- 59
S+L +L HP + + ++ + ++E+ +G + + + + P ++A
Sbjct: 67 QEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKAGRFP---NDVAKFY 123
Query: 60 CSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFV--GTPYWM 117
+ ++ YLHS I+RD+K N+LL G VK+ DFG A K P +F GTP ++
Sbjct: 124 HAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAK-KVPDRTFTLCGTPEYL 182
Query: 118 APEVILAMDEGQYDGKVDVWSLGI 141
APEVI + G+ VD W++G+
Sbjct: 183 APEVIQSKGHGK---AVDWWTMGV 203
Score = 35.9 bits (83), Expect = 0.076
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 645 CSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+ ++ YLHS I+RD+K N+LL G VK+
Sbjct: 124 HAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKV 159
>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase,
Nemo-Like Kinase. Serine/Threonine Kinases (STKs),
Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The NLK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mitogen-activated protein
kinases (MAPKs) are important mediators of cellular
responses to extracellular signals. NLK is an atypical
MAPK that is not regulated by a MAPK kinase. It
functions downstream of the MAPK kinase kinase Tak1,
which also plays a role in activating the JNK and p38
MAPKs. The Tak1/NLK pathways are regulated by Wnts, a
family of secreted proteins that is critical in the
control of asymmetric division and cell polarity. NLK
can phosphorylate transcription factors from the TCF/LEF
family, inhibiting their ability to activate the
transcription of target genes. In prostate cancer cells,
NLK is involved in regulating androgen receptor-mediated
transcription and its expression is altered during
cancer progression.
Length = 372
Score = 88.3 bits (219), Expect = 1e-18
Identities = 90/344 (26%), Positives = 137/344 (39%), Gaps = 74/344 (21%)
Query: 163 IFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHP 222
E R IG+G+FG V+ + VA+KKM + + + +E++ L KH
Sbjct: 1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSC-KRVFRELKMLCFFKHD 59
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA- 281
N + SA DI++ + F E +
Sbjct: 60 NVL---------------------SALDILQP----------------PHIDPFEEIYVV 82
Query: 282 --LFNFEVHK-----RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
L ++HK +PL + + +LRGL YLHS G +HRD+K GN+L+ +
Sbjct: 83 TELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVL 142
Query: 335 KLADFGSASIKCPANSF-----VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI--EL 387
K+ DFG A ++ P S V T Y+ APE++ M Y VD+WS+G CI EL
Sbjct: 143 KICDFGLARVEEPDESKHMTQEVVTQYYRAPEIL--MGSRHYTSAVDIWSVG--CIFAEL 198
Query: 388 AERKPPYFNMNAMSALYHIAQN-DTPCL--QSSDWSVIKTISSTAERKPPYFNMNAMSAL 444
R+ + + + L I TP L S + KPP ++ L
Sbjct: 199 LGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPP-----SLPVL 253
Query: 445 YHIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
Y + SS + H + L +P R S+ L H
Sbjct: 254 YTL---------SSQATHEAVHLLCRMLVFDPDKRISAADALAH 288
Score = 74.8 bits (184), Expect = 3e-14
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 44 IEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI 103
I V +PL + + +LRGL YLHS G +HRD+K GN+L+ +K+ DFG A +
Sbjct: 93 IIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARV 152
Query: 104 KCPANSF-----VGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
+ P S V T Y+ APE++ M Y VD+WS+G
Sbjct: 153 EEPDESKHMTQEVVTQYYRAPEIL--MGSRHYTSAVDIWSVG 192
Score = 45.9 bits (109), Expect = 5e-05
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 629 IEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET--------GTVKL 680
I V +PL + + +LRGL YLHS G +HRD+K GN+L+ G ++
Sbjct: 93 IIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARV 152
Query: 681 DTPDE 685
+ PDE
Sbjct: 153 EEPDE 157
>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine
Kinases, Anaplastic Lymphoma Kinase and Leukocyte
Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family;
Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine
(tyr) Kinase (LTK); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to tyr
residues in protein substrates. ALK and LTK are orphan
receptor tyr kinases (RTKs) whose ligands are not yet
well-defined. RTKs contain an extracellular
ligand-binding domain, a transmembrane region, and an
intracellular tyr kinase domain. They are usually
activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. ALK appears
to play an important role in mammalian neural
development as well as visceral muscle differentiation
in Drosophila. ALK is aberrantly expressed as fusion
proteins, due to chromosomal translocations, in about
60% of anaplastic large cell lymphomas (ALCLs). ALK
fusion proteins are also found in rare cases of diffuse
large B cell lymphomas (DLBCLs). LTK is mainly expressed
in B lymphocytes and neuronal tissues. It is important
in cell proliferation and survival. Transgenic mice
expressing TLK display retarded growth and high
mortality rate. In addition, a polymorphism in mouse and
human LTK is implicated in the pathogenesis of systemic
lupus erythematosus.
Length = 277
Score = 86.3 bits (214), Expect = 1e-18
Identities = 62/251 (24%), Positives = 86/251 (34%), Gaps = 57/251 (22%)
Query: 157 KEDPEKIFEDLREIGHGSFGAVYYA-----RCLVSREIVAIKKMSYLGKQCAEKWADILK 211
E P LR +GHG+FG VY VA+K + + E +D L
Sbjct: 1 PEVPRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDE--SDFLM 58
Query: 212 EIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQ 271
E + + H N + G ++++E G G+
Sbjct: 59 EALIMSKFNHQNIVRLIGVSFERLPRFILLELMAG--------------------GD--- 95
Query: 272 QLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 331
LK F L +++ V +G YL IHRD+ A N LLT
Sbjct: 96 -LKSFLRENR--PRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCK 152
Query: 332 G---TVKLADFGSASIKCPANSFVGTPY------------WMAPEVILAMDEGQYDGKVD 376
G K+ADFG A Y WM PE L +G + K D
Sbjct: 153 GPGRVAKIADFGM------ARDIYRASYYRKGGRAMLPIKWMPPEAFL---DGIFTSKTD 203
Query: 377 VWSLGITCIEL 387
VWS G+ E+
Sbjct: 204 VWSFGVLLWEI 214
Score = 64.4 bits (157), Expect = 3e-11
Identities = 41/151 (27%), Positives = 55/151 (36%), Gaps = 31/151 (20%)
Query: 13 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRP-------LKEEEIAAICSGVLR 65
H N + G ++++E G RP L +++ V +
Sbjct: 68 HQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAK 127
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETG---TVKLADFGSASIKCPANSFVGTPY------- 115
G YL IHRD+ A N LLT G K+ADFG A Y
Sbjct: 128 GCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGM------ARDIYRASYYRKGGRA 181
Query: 116 -----WMAPEVILAMDEGQYDGKVDVWSLGI 141
WM PE L +G + K DVWS G+
Sbjct: 182 MLPIKWMPPEAFL---DGIFTSKTDVWSFGV 209
Score = 37.0 bits (86), Expect = 0.025
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 631 VHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 676
L +++ V +G YL IHRD+ A N LLT G
Sbjct: 108 ERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKG 153
>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the
Serine/Threonine Kinase, p38delta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38delta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38delta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38delta, also called MAPK13, is found in
skeletal muscle, heart, lung, testis, pancreas, and
small intestine. It regulates microtubule function by
phosphorylating Tau. It activates the c-jun promoter and
plays a role in G2 cell cycle arrest. It also controls
the degration of c-Myb, which is associated with myeloid
leukemia and poor prognosis in colorectal cancer.
p38delta is the main isoform involved in regulating the
differentiation and apoptosis of keratinocytes.
Length = 342
Score = 87.3 bits (216), Expect = 2e-18
Identities = 71/240 (29%), Positives = 111/240 (46%), Gaps = 52/240 (21%)
Query: 158 EDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSY-LGKQCAEKWADILKEIRFL 216
E PE+ + L+++G G++G+V A + E VAIKK+S + K A +E+ L
Sbjct: 12 ELPER-YTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRA--YRELTLL 68
Query: 217 RQLKHPNTIEYRGCY-----LRD-HTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRL 270
+ ++H N I + + +LVM Y M L
Sbjct: 69 KHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPY----------------------MQTDL 106
Query: 271 QQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 330
Q+ + PL E+++ + +L GL Y+HS G IHRD+K GN+ + E
Sbjct: 107 QK--------------IMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNE 152
Query: 331 TGTVKLADFGSA-SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
+K+ DFG A +V T ++ APEVIL + Y+ VD+WS+G CI +AE
Sbjct: 153 DCELKILDFGLARHADAEMTGYVVTRWYRAPEVIL--NWMHYNQTVDIWSVG--CI-MAE 207
Score = 81.9 bits (202), Expect = 1e-16
Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 12/141 (8%)
Query: 7 LLRQLKHPNTIEYRGCY-----LRD-HTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAIC 60
LL+ ++H N I + + +LVM Y +D+ ++ PL E+++ +
Sbjct: 67 LLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQ---TDLQKIMGHPLSEDKVQYLV 123
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSFVGTPYWMAP 119
+L GL Y+HS G IHRD+K GN+ + E +K+ DFG A +V T ++ AP
Sbjct: 124 YQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAP 183
Query: 120 EVILAMDEGQYDGKVDVWSLG 140
EVIL + Y+ VD+WS+G
Sbjct: 184 EVIL--NWMHYNQTVDIWSVG 202
Score = 49.5 bits (118), Expect = 3e-06
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 15/100 (15%)
Query: 586 RHHHHHPVTHL-----SQHSYNNNNSNYSSLFSPQLVMEYCLGSASDIIEVHKRPLKEEE 640
+H H V L S S + Y LVM Y +D+ ++ PL E++
Sbjct: 69 KHMQHENVIGLLDVFTSAVSGDEFQDFY-------LVMPYMQ---TDLQKIMGHPLSEDK 118
Query: 641 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+ + +L GL Y+HS G IHRD+K GN+ + E +K+
Sbjct: 119 VQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKI 158
>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Pho85.
Serine/Threonine Kinases (STKs), Pho85 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Pho85 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Pho85 is a
multifunctional Cyclin-Dependent protein Kinase (CDK) in
yeast. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Pho85 is regulated
by 10 different cyclins (Pcls) and plays a role in G1
progression, cell polarity, phosphate and glycogen
metabolism, gene expression, and in signaling changes in
the environment. It is not essential for yeast viability
and is the functional homolog of mammalian CDK5, which
plays a role in central nervous system development.
Length = 284
Score = 86.0 bits (213), Expect = 2e-18
Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 39/233 (16%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
F+ L ++G G++ VY R + EIVA+K++ ++ A ++EI +++LKH N
Sbjct: 2 FKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTA--IREISLMKELKHEN 59
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ ++ LV EY ++ H G R
Sbjct: 60 IVRLHDVIHTENKLMLVFEYMDKDLKKYMDTH-----------GVR-------------- 94
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA- 342
L + + +L+G+ + H +HRD+K N+L+ + G +KLADFG A
Sbjct: 95 ------GALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLAR 148
Query: 343 SIKCPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP 392
+ P N+F V T ++ AP+V+L Y +D+WS+G E+ +P
Sbjct: 149 AFGIPVNTFSNEVVTLWYRAPDVLLG--SRTYSTSIDIWSVGCIMAEMITGRP 199
Score = 77.5 bits (191), Expect = 1e-15
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 8/141 (5%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVH--KRPLKEEEIAAICSGV 63
SL+++LKH N + ++ LV EY ++ H + L + + +
Sbjct: 50 SLMKELKHENIVRLHDVIHTENKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQL 109
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSF---VGTPYWMAP 119
L+G+ + H +HRD+K N+L+ + G +KLADFG A + P N+F V T ++ AP
Sbjct: 110 LKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAP 169
Query: 120 EVILAMDEGQYDGKVDVWSLG 140
+V+L Y +D+WS+G
Sbjct: 170 DVLLG--SRTYSTSIDIWSVG 188
Score = 39.8 bits (93), Expect = 0.004
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 616 LVMEYCLGSASDIIEVH--KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
LV EY ++ H + L + + +L+G+ + H +HRD+K N+L+
Sbjct: 75 LVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLIN 134
Query: 674 ETGTVKL 680
+ G +KL
Sbjct: 135 KRGELKL 141
>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SGK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
isoforms of SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGKs are
activated by insulin and growth factors via
phosphoinositide 3-kinase and PDK1. They activate ion
channels, ion carriers, and the Na-K-ATPase, as well as
regulate the activity of enzymes and transcription
factors. SGKs play important roles in transport, hormone
release, neuroexcitability, cell proliferation, and
apoptosis.
Length = 323
Score = 86.8 bits (215), Expect = 2e-18
Identities = 72/237 (30%), Positives = 101/237 (42%), Gaps = 47/237 (19%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIK---KMSYLGKQCAEKWADILKEIR-FLRQLKHPNTI 225
IG GSFG V A+ + A+K K + L K+ + I+ E L+ +KHP +
Sbjct: 3 IGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKH---IMAERNVLLKNVKHPFLV 59
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
+ + V++Y G E FH LQ+ + F E A F
Sbjct: 60 GLHYSFQTADKLYFVLDYVNGG----------ELFFH-------LQRERSFPEPRARF-- 100
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----S 341
EIA+ L YLHSL I+RD+K NILL G V L DFG
Sbjct: 101 -------YAAEIAS-------ALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEG 146
Query: 342 ASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMN 398
++F GTP ++APEV+ YD VD W LG E+ PP+++ +
Sbjct: 147 IEHSKTTSTFCGTPEYLAPEVLRKQP---YDRTVDWWCLGAVLYEMLYGLPPFYSRD 200
Score = 67.9 bits (166), Expect = 3e-12
Identities = 46/144 (31%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 1 MPAGSSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAIC 60
M + LL+ +KHP + + + V++Y G +R E
Sbjct: 43 MAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNGGELFFHLQRERSFPEPRARFYA 102
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASIKCPANSFVGTPYW 116
+ + L YLHSL I+RD+K NILL G V L DFG ++F GTP +
Sbjct: 103 AEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEY 162
Query: 117 MAPEVILAMDEGQYDGKVDVWSLG 140
+APEV+ YD VD W LG
Sbjct: 163 LAPEVLRKQP---YDRTVDWWCLG 183
Score = 35.2 bits (81), Expect = 0.13
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 652 LNYLHSLGRIHRDVKAGNILLTETGTVKL 680
L YLHSL I+RD+K NILL G V L
Sbjct: 109 LGYLHSLNIIYRDLKPENILLDSQGHVVL 137
>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Mitogen-Activated Protein Kinase MPK1.
Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MPK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of the MAPKs MPK1 from Saccharomyces
cerevisiae, Pmk1 from Schizosaccharomyces pombe, and
similar proteins. MAPKs are important mediators of
cellular responses to extracellular signals. MPK1 (also
called Slt2) and Pmk1 (also called Spm1) are
stress-activated MAPKs that regulate the cell wall
integrity (CWI) pathway, and are therefore important in
the maintainance of cell shape, cell wall construction,
morphogenesis, and ion homeostasis. MPK1 is activated in
response to cell wall stress including heat stimulation,
osmotic shock, UV irradiation, and any agents that
interfere with cell wall biogenesis such as chitin
antagonists, caffeine, or zymolase. MPK1 is regulated by
the MAP2Ks Mkk1/2, which are regulated by the MAP3K
Bck1. Pmk1 is also activated by multiple stresses
including elevated temperatures, hyper- or hypotonic
stress, glucose deprivation, exposure to cell-wall
damaging compounds, and oxidative stress. It is
regulated by the MAP2K Pek1, which is regulated by the
MAP3K Mkh1.
Length = 332
Score = 86.7 bits (215), Expect = 3e-18
Identities = 73/269 (27%), Positives = 109/269 (40%), Gaps = 70/269 (26%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSR--EIVAIKKMS-YLGKQCAEKWADILKEIRFLRQLK 220
+E ++E+G G++G V AR + E VAIKK++ K+ K A L+E++ LR +
Sbjct: 2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRA--LRELKLLRHFR 59
Query: 221 -HPNTI-----------EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGN 268
H N + YL + +ME L II
Sbjct: 60 GHKNITCLYDMDIVFPGNFNELYLYEE----LMEADL---HQIIRSG------------- 99
Query: 269 RLQQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 328
Q L HF F +++ L GL Y+HS +HRD+K GN+L+
Sbjct: 100 --QPLTDA--HFQSFIYQI-----------------LCGLKYIHSANVLHRDLKPGNLLV 138
Query: 329 TETGTVKLADFGSASIKCPANSFVGTPY--------WM-APEVILAMDEGQYDGKVDVWS 379
+K+ DFG A N + W APE++L+ Y +DVWS
Sbjct: 139 NADCELKICDFGLAR-GFSENPGENAGFMTEYVATRWYRAPEIMLSFQS--YTKAIDVWS 195
Query: 380 LGITCIELAERKPPYFNMNAMSALYHIAQ 408
+G EL RKP + + + L I Q
Sbjct: 196 VGCILAELLGRKPVFKGKDYVDQLNQILQ 224
Score = 65.9 bits (161), Expect = 2e-11
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 32/155 (20%)
Query: 7 LLRQLK-HPNTI-----------EYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEE 54
LLR + H N + YL + +ME L II +PL +
Sbjct: 54 LLRHFRGHKNITCLYDMDIVFPGNFNELYLYEE----LMEADL---HQIIR-SGQPLTDA 105
Query: 55 EIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTP 114
+ +L GL Y+HS +HRD+K GN+L+ +K+ DFG A N
Sbjct: 106 HFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLAR-GFSENPGENAG 164
Query: 115 Y--------WM-APEVILAMDEGQYDGKVDVWSLG 140
+ W APE++L+ Y +DVWS+G
Sbjct: 165 FMTEYVATRWYRAPEIMLSFQS--YTKAIDVWSVG 197
Score = 43.9 bits (104), Expect = 2e-04
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 604 NNSNYSSLFSPQLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHR 663
N++ L+ + +ME L II +PL + + +L GL Y+HS +HR
Sbjct: 74 FPGNFNELYLYEELMEADL---HQIIR-SGQPLTDAHFQSFIYQILCGLKYIHSANVLHR 129
Query: 664 DVKAGNILLTETGTVKL 680
D+K GN+L+ +K+
Sbjct: 130 DLKPGNLLVNADCELKI 146
>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Ephrin Receptor (EphR) subfamily; catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). They can be classified into two classes (EphA
and EphB), according to their extracellular sequences,
which largely correspond to binding preferences for
either GPI-anchored ephrin-A ligands or transmembrane
ephrin-B ligands. Vertebrates have ten EphA and six EhpB
receptors, which display promiscuous ligand interactions
within each class. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. This allows ephrin/EphR dimers to form,
leading to the activation of the intracellular tyr
kinase domain. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). The main effect of ephrin/EphR interaction
is cell-cell repulsion or adhesion. Ephrin/EphR
signaling is important in neural development and
plasticity, cell morphogenesis and proliferation,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis.
Length = 266
Score = 84.7 bits (210), Expect = 4e-18
Identities = 80/345 (23%), Positives = 122/345 (35%), Gaps = 100/345 (28%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVS---REIVAIK--KMSYLGKQCAEKWADILKEI 213
DP + + + IG G FG V R + VAIK K KQ D L E
Sbjct: 2 DPSYVTIE-KVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQ----RLDFLTEA 56
Query: 214 RFLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQL 273
+ Q HPN I G + ++ EY M
Sbjct: 57 SIMGQFDHPNIIRLEGVVTKSRPVMIITEY----------------------M------- 87
Query: 274 KCFTEHFALFNF-EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 332
E+ +L F + ++ + G+ G+ YL + +HRD+ A NIL+
Sbjct: 88 ----ENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNL 143
Query: 333 TVKLADFGSASIKCPANSFVGT-----PY-WMAPEVILAMDEGQYDGKVDVWSLGITCIE 386
K++DFG + + + T P W APE A+ ++ DVWS GI E
Sbjct: 144 VCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPE---AIAYRKFTSASDVWSFGIVMWE 200
Query: 387 L---AERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSA 443
+ ER PY++M S+ VIK + PP M+ SA
Sbjct: 201 VMSYGER--PYWDM-------------------SNQDVIKAVEDGYRLPPP---MDCPSA 236
Query: 444 LYHIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTH 488
LY + C K+ +RP+ ++++
Sbjct: 237 LYQLML--------------------DCWQKDRNERPTFSQIVST 261
Score = 66.6 bits (163), Expect = 5e-12
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGVL 64
S++ Q HPN I G + ++ EY GS + + ++ + G+
Sbjct: 57 SIMGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIA 116
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGT-----PY-WMA 118
G+ YL + +HRD+ A NIL+ K++DFG + + + T P W A
Sbjct: 117 SGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTA 176
Query: 119 PEVILAMDEGQYDGKVDVWSLGI 141
PE A+ ++ DVWS GI
Sbjct: 177 PE---AIAYRKFTSASDVWSFGI 196
Score = 33.9 bits (78), Expect = 0.25
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 616 LVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
++ EY GS + + ++ + G+ G+ YL + +HRD+ A NIL+
Sbjct: 82 IITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNS 141
>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional.
Length = 294
Score = 85.3 bits (211), Expect = 5e-18
Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 40/250 (16%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+E + +IG G++G VY AR V+ E +A+KK+ L ++ + ++EI L++++H N
Sbjct: 4 YEKVEKIGEGTYGVVYKARDRVTNETIALKKIR-LEQEDEGVPSTAIREISLLKEMQHGN 62
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ + + +LV EY D+ LK + F
Sbjct: 63 IVRLQDVVHSEKRLYLVFEYL-----DL--------------------DLKKHMDSSPDF 97
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE-TGTVKLADFGSA 342
I +LRG+ Y HS +HRD+K N+L+ T +KLADFG A
Sbjct: 98 AKNPRL-------IKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLA 150
Query: 343 -SIKCPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMN 398
+ P +F V T ++ APE++L Y VD+WS+G E+ +KP + +
Sbjct: 151 RAFGIPVRTFTHEVVTLWYRAPEILLG--SRHYSTPVDIWSVGCIFAEMVNQKPLFPGDS 208
Query: 399 AMSALYHIAQ 408
+ L+ I +
Sbjct: 209 EIDELFKIFR 218
Score = 69.1 bits (169), Expect = 1e-12
Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 40/185 (21%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-------LGSASDIIEVHKRPLKEEEIAA 58
SLL++++H N + + + +LV EY + S+ D + + I
Sbjct: 53 SLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRL------IKT 106
Query: 59 ICSGVLRGLNYLHSLGRIHRDVKAGNILLTE-TGTVKLADFGSA-SIKCPANSF---VGT 113
+LRG+ Y HS +HRD+K N+L+ T +KLADFG A + P +F V T
Sbjct: 107 YLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVT 166
Query: 114 PYWMAPEVILAMDEGQYDGKVDVWSLG-----------ITPGSLKDPEIAELFDKEDPEK 162
++ APE++L Y VD+WS+G + PG D EI ELF K
Sbjct: 167 LWYRAPEILLG--SRHYSTPVDIWSVGCIFAEMVNQKPLFPG---DSEIDELF------K 215
Query: 163 IFEDL 167
IF L
Sbjct: 216 IFRIL 220
Score = 31.7 bits (72), Expect = 1.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTE-TGTVKL 680
+LRG+ Y HS +HRD+K N+L+ T +KL
Sbjct: 111 ILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKL 144
>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase,
Interleukin-2-inducible T-cell Kinase. Protein Tyrosine
Kinase (PTK) family; Interleukin-2 (IL-2)-inducible
T-cell kinase (Itk); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Itk (also
known as Tsk or Emt) is a member of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Itk
contains the Tec homology (TH) domain containing one
proline-rich region and a zinc-binding region. Tec
kinases are expressed mainly by haematopoietic cells.
Itk is expressed in T-cells and mast cells, and is
important in their development and differentiation. Of
the three Tec kinases expressed in T-cells, Itk plays
the predominant role in T-cell receptor (TCR) signaling.
It is activated by phosphorylation upon TCR crosslinking
and is involved in the pathway resulting in
phospholipase C-gamma1 activation and actin
polymerization. It also plays a role in the downstream
signaling of the T-cell costimulatory receptor CD28, the
T-cell surface receptor CD2, and the chemokine receptor
CXCR4. In addition, Itk is crucial for the development
of T-helper(Th)2 effector responses.
Length = 256
Score = 83.8 bits (207), Expect = 8e-18
Identities = 84/325 (25%), Positives = 123/325 (37%), Gaps = 90/325 (27%)
Query: 169 EIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYR 228
EIG G FG V+ L R+ VAIK + ++ A D ++E + + +L HP ++
Sbjct: 11 EIGSGQFGLVWLGYWLEKRK-VAIKTI----REGAMSEEDFIEEAQVMMKLSHPKLVQLY 65
Query: 229 GCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEVH 288
G LV E F EH L ++
Sbjct: 66 GVCTERSPICLVFE---------------------------------FMEHGCLSDYLRA 92
Query: 289 KR-PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKC- 346
+R +E + +C V G+ YL S IHRD+ A N L+ E VK++DFG
Sbjct: 93 QRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLD 152
Query: 347 -PANSFVGTPY---WMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPPYFNMNAMS 401
S GT + W +PEV +Y K DVWS G+ E+ +E K PY N
Sbjct: 153 DQYTSSTGTKFPVKWSSPEVF---SFSKYSSKSDVWSFGVLMWEVFSEGKTPYEN----- 204
Query: 402 ALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWS 461
S+ V++TI++ P A ++Y + Q+
Sbjct: 205 --------------RSNSEVVETINAGFRLYKPRL---ASQSVYELMQH----------- 236
Query: 462 DTFAHFVSSCLAKNPADRPSSGRLL 486
C + P DRPS LL
Sbjct: 237 ---------CWKERPEDRPSFSLLL 252
Score = 73.4 bits (180), Expect = 3e-14
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGV 63
+ ++ +L HP ++ G LV E+ G SD + + +E + +C V
Sbjct: 50 AQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDV 109
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKC--PANSFVGTPY---WMA 118
G+ YL S IHRD+ A N L+ E VK++DFG S GT + W +
Sbjct: 110 CEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSS 169
Query: 119 PEVILAMDEGQYDGKVDVWSLGI 141
PEV +Y K DVWS G+
Sbjct: 170 PEVF---SFSKYSSKSDVWSFGV 189
Score = 39.2 bits (91), Expect = 0.005
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 616 LVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
LV E+ G SD + + +E + +C V G+ YL S IHRD+ A N L+ E
Sbjct: 76 LVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGE 135
Query: 675 TGTVKL 680
VK+
Sbjct: 136 NQVVKV 141
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Srm and
Brk are a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases in general contain an N-terminal SH4 domain with
a myristoylation site, followed by SH3 and SH2 domains,
a tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr; they are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Srm and
Brk however, lack the N-terminal myristylation sites.
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Brk has been found to be overexpressed
in a majority of breast tumors.
Length = 261
Score = 83.3 bits (206), Expect = 1e-17
Identities = 69/257 (26%), Positives = 97/257 (37%), Gaps = 43/257 (16%)
Query: 158 EDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLR 217
E P + F R++G G FG V+ VAIK + K D KE++ L+
Sbjct: 2 ERPREEFTLERKLGSGYFGEVWEGLWKNRVR-VAIKILK---SDDLLKQQDFQKEVQALK 57
Query: 218 QLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
+L+H + I +++ E +E+ G+ L L+
Sbjct: 58 RLRHKHLISLFAVCSVGEPVYIITEL-------------MEK-------GSLLAFLR--- 94
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
+ L + + V G+ YL IHRD+ A NIL+ E K+A
Sbjct: 95 --------SPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVA 146
Query: 338 DFGSAS-IKCPANSFVGT--PY-WMAPEVILAMDEGQYDGKVDVWSLGITCIELAER-KP 392
DFG A IK PY W APE A G + K DVWS GI E+ +
Sbjct: 147 DFGLARLIKEDVYLSSDKKIPYKWTAPE---AASHGTFSTKSDVWSFGILLYEMFTYGQV 203
Query: 393 PYFNMNAMSALYHIAQN 409
PY MN I
Sbjct: 204 PYPGMNNHEVYDQITAG 220
Score = 63.6 bits (155), Expect = 5e-11
Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 8 LRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRP----LKEEEIAAICSGV 63
L++L+H + I +++ E L ++ + P L + + V
Sbjct: 56 LKRLRHKHLISLFAVCSVGEPVYIITE--LMEKGSLLAFLRSPEGQVLPVASLIDMACQV 113
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS-IKCPANSFVGT--PY-WMAP 119
G+ YL IHRD+ A NIL+ E K+ADFG A IK PY W AP
Sbjct: 114 AEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAP 173
Query: 120 EVILAMDEGQYDGKVDVWSLGI 141
E A G + K DVWS GI
Sbjct: 174 E---AASHGTFSTKSDVWSFGI 192
Score = 31.3 bits (71), Expect = 2.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 634 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+ L + + V G+ YL IHRD+ A NIL+ E K+
Sbjct: 99 QVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKV 145
>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine
Kinase (PTK) family; Janus kinase (Jak) subfamily;
catalytic (c) domain (repeat 2). The Jak subfamily is
composed of Jak1, Jak2, Jak3, TYK2, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal tyr kinase
catalytic domain. Most Jaks are expressed in a wide
variety of tissues, except for Jak3, which is expressed
only in hematopoietic cells. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jaks are also involved in regulating the surface
expression of some cytokine receptors. The Jak-STAT
pathway is involved in many biological processes
including hematopoiesis, immunoregulation, host defense,
fertility, lactation, growth, and embryogenesis.
Length = 284
Score = 83.2 bits (206), Expect = 2e-17
Identities = 68/245 (27%), Positives = 110/245 (44%), Gaps = 58/245 (23%)
Query: 160 PEKIFEDLREIGHGSFGAVYYARCLV----SREIVAIKKMSYLGKQCAEKWADILKEIRF 215
++ + ++++G G FG V R + E VA+K +++ G++ +D +EI
Sbjct: 2 EKRHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHR--SDFEREIEI 59
Query: 216 LRQLKHPNTIEYRGCYLRDHTA--WLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQ 272
LR L H N ++Y+G + L+MEY GS D ++ H + + N +
Sbjct: 60 LRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQ-------RHRDQI-NLKRL 111
Query: 273 LKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 332
L LF+ + IC +G++YL S IHRD+ A NIL+
Sbjct: 112 L--------LFSSQ-------------IC----KGMDYLGSQRYIHRDLAARNILVESED 146
Query: 333 TVKLADFGSASI----------KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 382
VK++DFG A + K P S + +W APE + ++ DVWS G+
Sbjct: 147 LVKISDFGLAKVLPEDKDYYYVKEPGESPI---FWYAPE---CLRTSKFSSASDVWSFGV 200
Query: 383 TCIEL 387
T EL
Sbjct: 201 TLYEL 205
Score = 74.4 bits (183), Expect = 2e-14
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 19/148 (12%)
Query: 8 LRQLKHPNTIEYRGCYLRDHTA--WLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVL 64
LR L H N ++Y+G + L+MEY GS D ++ H+ + + + S +
Sbjct: 60 LRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQIC 119
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI----------KCPANSFVGTP 114
+G++YL S IHRD+ A NIL+ VK++DFG A + K P S +
Sbjct: 120 KGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPI--- 176
Query: 115 YWMAPEVILAMDEGQYDGKVDVWSLGIT 142
+W APE + ++ DVWS G+T
Sbjct: 177 FWYAPE---CLRTSKFSSASDVWSFGVT 201
Score = 45.1 bits (107), Expect = 7e-05
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 613 SPQLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
S +L+MEY GS D ++ H+ + + + S + +G++YL S IHRD+ A NIL
Sbjct: 82 SLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNIL 141
Query: 672 LTETGTVKL 680
+ VK+
Sbjct: 142 VESEDLVKI 150
>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine
Kinases, Fibroblast Growth Factor Receptors. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor (FGFR) subfamily; catalytic (c) domain. The
FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K).PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with three
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
FGFRs to their ligands, the FGFs, and to heparin/heparan
sulfate (HS) results in the formation of a ternary
complex, which leads to receptor dimerization and
activation, and intracellular signaling. There are at
least 23 FGFs and four types of FGFRs. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. FGF/FGFR signaling is
important in the regulation of embryonic development,
homeostasis, and regenerative processes. Depending on
the cell type and stage, FGFR signaling produces diverse
cellular responses including proliferation, growth
arrest, differentiation, and apoptosis. Aberrant
signaling leads to many human diseases such as skeletal,
olfactory, and metabolic disorders, as well as cancer.
Length = 293
Score = 83.2 bits (206), Expect = 2e-17
Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 38/227 (16%)
Query: 170 IGHGSFGAVYYAR-----CLVSREIVAIKKMSYLGKQCAEK-WADILKEIRFLRQL-KHP 222
+G G+FG V A VA+K L EK +D++ E+ ++ + KH
Sbjct: 20 LGEGAFGQVVKAEAVGLDNPNETSTVAVKM---LKDDATEKDLSDLVSEMEMMKMIGKHK 76
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
N I G ++ ++V+EY H R+F L+ + E+ +
Sbjct: 77 NIINLLGVCTQEGPLYVVVEYA---------AHGNLRDF--------LRARRPPGEYASP 119
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA 342
+ + L ++++ + V RG+ +L S IHRD+ A N+L+TE +K+ADFG A
Sbjct: 120 DDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLA 179
Query: 343 -SIKCPANSFVGT-----PY-WMAPEVILAMDEGQYDGKVDVWSLGI 382
I + + T P WMAPE A+ + Y + DVWS G+
Sbjct: 180 RDIHH-IDYYRKTTNGRLPVKWMAPE---ALFDRVYTHQSDVWSFGV 222
Score = 80.5 bits (199), Expect = 2e-16
Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 41/190 (21%)
Query: 12 KHPNTIEYRGCYLRDHTAWLVMEYC----------------LGSASDIIEVHKRPLKEEE 55
KH N I G ++ ++V+EY ++ D + L +++
Sbjct: 74 KHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKD 133
Query: 56 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSFVGT- 113
+ + V RG+ +L S IHRD+ A N+L+TE +K+ADFG A I + + T
Sbjct: 134 LVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHH-IDYYRKTT 192
Query: 114 ----PY-WMAPEVILAMDEGQYDGKVDVWSLGI------TPGSLKDPEIAELFDKEDPEK 162
P WMAPE A+ + Y + DVWS G+ T G P I E+
Sbjct: 193 NGRLPVKWMAPE---ALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPV-------EE 242
Query: 163 IFEDLREIGH 172
+F+ L+E G+
Sbjct: 243 LFKLLKE-GY 251
Score = 42.4 bits (100), Expect = 5e-04
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 617 VMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 676
EY + D + L ++++ + V RG+ +L S IHRD+ A N+L+TE
Sbjct: 113 PGEYA---SPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDH 169
Query: 677 TVKL 680
+K+
Sbjct: 170 VMKI 173
>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, in response to
various stimuli such as growth factors, hormones,
neurotransmitters, cellular stress, and pro-inflammatory
cytokines. This triggers phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) in the
C-terminal extension of NTD, which facilitates the
phosphorylation of the A-loop and activates the NTD,
which in turn phosphorylates downstream targets. MSKs
are predominantly nuclear proteins. They are widely
expressed in many tissues including heart, brain, lung,
liver, kidney, and pancreas. There are two isoforms of
MSK, called MSK1 and MSK2.
Length = 288
Score = 82.9 bits (205), Expect = 3e-17
Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
LF + E E+ + ++ L++LH LG I+RD+K NILL G V L DFG
Sbjct: 92 LFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGL 151
Query: 342 ASIKCP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
+ A SF GT +MAPEVI G +D VD WSLG+ EL P+
Sbjct: 152 SKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGG-HDKAVDWWSLGVLTFELLTGASPF 208
Score = 80.2 bits (198), Expect = 2e-16
Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 31 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 90
L+++Y G + E E+ + ++ L++LH LG I+RD+K NILL
Sbjct: 82 LILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSE 141
Query: 91 GTVKLADFGSASIKCP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
G V L DFG + A SF GT +MAPEVI G +D VD WSLG+
Sbjct: 142 GHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGG-HDKAVDWWSLGV 196
Score = 42.1 bits (99), Expect = 6e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
L+++Y G + E E+ + ++ L++LH LG I+RD+K NILL
Sbjct: 82 LILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSE 141
Query: 676 GTVKL 680
G V L
Sbjct: 142 GHVVL 146
>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C.
Serine/Threonine Kinases (STKs), Classical (or
Conventional) Protein Kinase C (cPKC) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. cPKCs contain a
calcium-binding C2 region in their regulatory domain.
There are four cPKC isoforms, named alpha, betaI,
betaII, and gamma. cPKCs are potent kinases for
histones, myelin basic protein, and protamine. PKC-gamma
is mainly expressed in neuronal tissues. It plays a role
in protection from ischemia.
Length = 324
Score = 83.3 bits (206), Expect = 3e-17
Identities = 74/243 (30%), Positives = 105/243 (43%), Gaps = 55/243 (22%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADI---LKEIRFLR-QL 219
F L +G GSFG V A + E+ AIK L K + D+ + E R L
Sbjct: 2 FNFLMVLGKGSFGKVMLAERKGTDELYAIK---ILKKDVIIQDDDVECTMVEKRVLALPG 58
Query: 220 KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
K P + C+ + VMEY G D++ +H+ QQ+ F E
Sbjct: 59 KPPFLTQLHSCFQTMDRLYFVMEYVNGG--DLM--------YHI-------QQVGKFKEP 101
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
A+F EIA GL +LHS G I+RD+K N++L G +K+ADF
Sbjct: 102 HAVF---------YAAEIAI-------GLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADF 145
Query: 340 GSASIKCPAN--------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 391
G C N +F GTP ++APE+I Y VD W+ G+ E+ +
Sbjct: 146 G----MCKENIFGGKTTRTFCGTPDYIAPEIIAYQ---PYGKSVDWWAFGVLLYEMLAGQ 198
Query: 392 PPY 394
PP+
Sbjct: 199 PPF 201
Score = 78.7 bits (194), Expect = 1e-15
Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 41/192 (21%)
Query: 30 WLVMEYCLGS--ASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 87
+ VMEY G I +V K KE + + GL +LHS G I+RD+K N++L
Sbjct: 77 YFVMEYVNGGDLMYHIQQVGK--FKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVML 134
Query: 88 TETGTVKLADFGSASIKCPAN--------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSL 139
G +K+ADFG C N +F GTP ++APE+I Y VD W+
Sbjct: 135 DAEGHIKIADFG----MCKENIFGGKTTRTFCGTPDYIAPEIIAYQ---PYGKSVDWWAF 187
Query: 140 GITPGSLKDPEIAEL------FDKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIK 193
G+ + E+ FD ED +++F+ + E V Y + L S+E V+I
Sbjct: 188 GVL--------LYEMLAGQPPFDGEDEDELFQSIME------HNVSYPKSL-SKEAVSIC 232
Query: 194 KMSYLGKQCAEK 205
K L K A++
Sbjct: 233 K-GLLTKHPAKR 243
Score = 37.8 bits (88), Expect = 0.016
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 617 VMEYCLGS--ASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
VMEY G I +V K KE + + GL +LHS G I+RD+K N++L
Sbjct: 79 VMEYVNGGDLMYHIQQVGK--FKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDA 136
Query: 675 TGTVKL 680
G +K+
Sbjct: 137 EGHIKI 142
>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional.
Length = 357
Score = 83.8 bits (207), Expect = 3e-17
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
LL+ + HP+ I + + +V+ + + RPL ++ I +L G
Sbjct: 110 LLQNVNHPSVIRMKDTLVSGAITCMVLPHYSSDLYTYLTKRSRPLPIDQALIIEKQILEG 169
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANS-----FVGTPYWMAPEV 121
L YLH+ IHRDVK NI + + V + D G+A + P + GT APEV
Sbjct: 170 LRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAA--QFPVVAPAFLGLAGTVETNAPEV 227
Query: 122 ILAMDEGQYDGKVDVWSLGI 141
LA D +Y+ K D+WS GI
Sbjct: 228 -LARD--KYNSKADIWSAGI 244
Score = 81.1 bits (200), Expect = 2e-16
Identities = 59/221 (26%), Positives = 84/221 (38%), Gaps = 35/221 (15%)
Query: 290 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN 349
RPL ++ I +L GL YLH+ IHRDVK NI + + V + D G+A + P
Sbjct: 152 RPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAA--QFPVV 209
Query: 350 S-----FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIE-------LAERKPPYFNM 397
+ GT APEV LA D +Y+ K D+WS GI E + E P
Sbjct: 210 APAFLGLAGTVETNAPEV-LARD--KYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEE 266
Query: 398 NAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQ------ND 451
S H+ + +I T+ E P + A
Sbjct: 267 YVKSCHSHLLK------------IISTLKVHPEEFPRDPGSRLVRGFIEYASLERQPYTR 314
Query: 452 TPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVT 492
PC Q + V L + A RPS+ +L + +
Sbjct: 315 YPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYPMFA 355
Score = 45.6 bits (108), Expect = 7e-05
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 634 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 678
RPL ++ I +L GL YLH+ IHRDVK NI + + V
Sbjct: 152 RPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQV 196
>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TDY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TDY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TDY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. Oryza sativa contains
at least 17 MAPKs. There are two subtypes of plant MAPKs
based on the conserved phosphorylation motif present in
the activation loop, TEY and TDY. Arabidopsis thaliana
contains more TEY-type MAPKs than TDY-type, whereas the
reverse is true for Oryza sativa. This subfamily
represents the TDY subtype and is composed of Group D
plant MAPKs including Arabidopsis thaliana MPK18
(AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1
(OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1),
Zea mays MPK6, and the Medicago sativa TDY1 gene
product. OsBWMK1 enhances resistance to pathogenic
infections. It mediates stress-activated defense
responses by activating a transcription factor that
affects the expression of stress-related genes. AtMPK18
is involved in microtubule-related functions.
Length = 338
Score = 83.3 bits (206), Expect = 4e-17
Identities = 87/342 (25%), Positives = 135/342 (39%), Gaps = 82/342 (23%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYRG 229
IG GS+G V A + E VAIKK++ + + ++ IL+EI+ LR L+HP
Sbjct: 8 IGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDA-TRILREIKLLRLLRHP------- 59
Query: 230 CYLRDHTAWLVMEYCLGSASDIIEVHWI-----EREFH-----VEGMGNRLQQL-----K 274
DI+E+ I REF E M + L Q+
Sbjct: 60 --------------------DIVEIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDD 99
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
EH F +++ LR L Y+H+ HRD+K NIL +
Sbjct: 100 LTPEHHQFFLYQL-----------------LRALKYIHTANVFHRDLKPKNILANADCKL 142
Query: 335 KLADFGSASI---KCPANSF----VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
K+ DFG A + P F V T ++ APE+ + +Y +D+WS+G E+
Sbjct: 143 KICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSF-FSKYTPAIDIWSIGCIFAEV 201
Query: 388 AERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHI 447
KP + N + L I T L + I + + R+ +++M
Sbjct: 202 LTGKPLFPGKNVVHQLDLI----TDLLGTPSPETISRVRNEKARR----YLSSMR----- 248
Query: 448 AQNDTPCLQSSDWSDTFA-HFVSSCLAKNPADRPSSGRLLTH 488
+ P Q +D A + LA +P DRP++ L
Sbjct: 249 KKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALAD 290
Score = 59.0 bits (143), Expect = 3e-09
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 24/151 (15%)
Query: 7 LLRQLKHPNTIEYRGCYL-------RD-HTAWLVMEYCLGSASDIIEVHKR--PLKEEEI 56
LLR L+HP+ +E + L +D + + +ME SD+ +V K L E
Sbjct: 52 LLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELME------SDLHQVIKANDDLTPEHH 105
Query: 57 AAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI---KCPANSF--- 110
+LR L Y+H+ HRD+K NIL +K+ DFG A + P F
Sbjct: 106 QFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTD 165
Query: 111 -VGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
V T ++ APE+ + +Y +D+WS+G
Sbjct: 166 YVATRWYRAPELCGSF-FSKYTPAIDIWSIG 195
Score = 35.9 bits (83), Expect = 0.063
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNIL 671
+LR L Y+H+ HRD+K NIL
Sbjct: 112 LLRALKYIHTANVFHRDLKPKNIL 135
>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the
Serine/Threonine Kinase, p38beta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38beta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38beta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38beta, also called MAPK11, is widely expressed
in tissues and shows more similarity with p38alpha than
with the other isoforms. Both are sensitive to
pyridinylimidazoles and share some common substrates
such as MAPK activated protein kinase 2 (MK2) and the
transcription factors ATF2, c-Fos and, ELK-1. p38beta is
involved in regulating the activation of the
cyclooxygenase-2 promoter and the expression of
TGFbeta-induced alpha-smooth muscle cell actin.
Length = 343
Score = 83.6 bits (206), Expect = 4e-17
Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 49/297 (16%)
Query: 158 EDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLR 217
E PE+ +++L +G G++G+V A R+ VA+KK+S + +E+R L+
Sbjct: 12 EVPER-YQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHA-RRTYRELRLLK 69
Query: 218 QLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQL-KCF 276
+KH N I L + S + EV+ + MG L + KC
Sbjct: 70 HMKHENVI-----------GLLDVFTPATSIENFNEVYLV-----TNLMGADLNNIVKC- 112
Query: 277 TEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 336
+ L +E + + +LRGL Y+HS G IHRD+K N+ + E +++
Sbjct: 113 -------------QKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRI 159
Query: 337 ADFGSA-SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYF 395
DFG A +V T ++ APE++L + Y+ VD+WS+G EL + K +
Sbjct: 160 LDFGLARQADDEMTGYVATRWYRAPEIML--NWMHYNQTVDIWSVGCIMAELLKGKALFP 217
Query: 396 NMNAMSALYHIAQ-NDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQND 451
+ + L I + TP S + V+K ISS RK Y +L H+ Q D
Sbjct: 218 GNDYIDQLKRIMEVVGTP---SPE--VLKKISSEHARK--YI-----QSLPHMPQQD 262
Score = 68.2 bits (166), Expect = 4e-12
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHT------AWLVMEYCLGSASDIIEVHKRPLKEEEIAAIC 60
LL+ +KH N I + + +LV ++I++ K L +E + +
Sbjct: 67 LLKHMKHENVIGLLDVFTPATSIENFNEVYLVTNLMGADLNNIVKCQK--LSDEHVQFLI 124
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSFVGTPYWMAP 119
+LRGL Y+HS G IHRD+K N+ + E +++ DFG A +V T ++ AP
Sbjct: 125 YQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADDEMTGYVATRWYRAP 184
Query: 120 EVILAMDEGQYDGKVDVWSLGITPGSL 146
E++L + Y+ VD+WS+G L
Sbjct: 185 EIML--NWMHYNQTVDIWSVGCIMAEL 209
Score = 41.6 bits (97), Expect = 0.001
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 636 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
L +E + + +LRGL Y+HS G IHRD+K N+ + E
Sbjct: 115 LSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNE 153
>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine
Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyk2 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase catalytic domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Tyk2 is widely expressed in many tissues. It is involved
in signaling via the cytokine receptors IFN-alphabeta,
IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell
surface urokinase receptor (uPAR) signaling and plays a
role in modulating vascular smooth muscle cell (VSMC)
functional behavior in response to injury. Tyk2 is also
important in dendritic cell function and T helper (Th)1
cell differentiation. A homozygous mutation of Tyk2 was
found in a patient with hyper-IgE syndrome (HIES), a
primary immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 283
Score = 82.3 bits (203), Expect = 4e-17
Identities = 72/246 (29%), Positives = 99/246 (40%), Gaps = 62/246 (25%)
Query: 167 LREIGHGSFGAV----YYARCLVSREIVAIKKM-SYLGKQCAEKWADILKEIRFLRQLKH 221
+R +G G FG V Y + E+VA+K + G+Q W KEI L+ L H
Sbjct: 9 IRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGW---KKEINILKTLYH 65
Query: 222 PNTIEYRGCYLR--DHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
N ++Y+GC L+MEY LGS D + H + L QL F +
Sbjct: 66 ENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLN-----------LAQLLLFAQ 114
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
IC G+ YLHS IHRD+ A N+LL VK+ D
Sbjct: 115 Q--------------------IC----EGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGD 150
Query: 339 FGSAS----------IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA 388
FG A ++ +S V +W A E + E ++ DVWS G+T EL
Sbjct: 151 FGLAKAVPEGHEYYRVREDGDSPV---FWYAVE---CLKENKFSYASDVWSFGVTLYELL 204
Query: 389 ERKPPY 394
Sbjct: 205 THCDSK 210
Score = 74.2 bits (182), Expect = 2e-14
Identities = 60/187 (32%), Positives = 85/187 (45%), Gaps = 29/187 (15%)
Query: 7 LLRQLKHPNTIEYRGCYLR--DHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAA--ICS 61
+L+ L H N ++Y+GC L+MEY LGS D + HK L + + A IC
Sbjct: 59 ILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQIC- 117
Query: 62 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS----------IKCPANSFV 111
G+ YLHS IHRD+ A N+LL VK+ DFG A ++ +S V
Sbjct: 118 ---EGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPV 174
Query: 112 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDPEKIFEDLREIG 171
+W A E + E ++ DVWS G+T L + K+ P K FE++
Sbjct: 175 ---FWYAVE---CLKENKFSYASDVWSFGVTLYEL----LTHCDSKQSPPKKFEEMIGPK 224
Query: 172 HGSFGAV 178
G V
Sbjct: 225 QGQMTVV 231
Score = 44.5 bits (105), Expect = 1e-04
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 615 QLVMEYC-LGSASDIIEVHKRPLKEEEIAA--ICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
QL+MEY LGS D + HK L + + A IC G+ YLHS IHRD+ A N+L
Sbjct: 84 QLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQIC----EGMAYLHSQHYIHRDLAARNVL 139
Query: 672 LTETGTVKL 680
L VK+
Sbjct: 140 LDNDRLVKI 148
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals,
there are three PKN isoforms from different genes
(designated PKN-alpha, beta, and gamma), which show
different enzymatic properties, tissue distribution, and
varied functions. PKN can be activated by the small
GTPase Rho, and by fatty acids such as arachidonic and
linoleic acids. It is involved in many biological
processes including cytokeletal regulation, cell
adhesion, vesicle transport, glucose transport,
regulation of meiotic maturation and embryonic cell
cycles, signaling to the nucleus, and tumorigenesis.
Length = 324
Score = 82.8 bits (205), Expect = 4e-17
Identities = 62/208 (29%), Positives = 92/208 (44%), Gaps = 39/208 (18%)
Query: 12 KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLH 71
+HP + C+ + VMEY G ++ +H E + V+ GL YLH
Sbjct: 60 RHPFLVNLFACFQTEDHVCFVMEYAAGGDL-MMHIHTDVFSEPRAVFYAACVVLGLQYLH 118
Query: 72 SLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN--------SFVGTPYWMAPEVIL 123
++RD+K N+LL G VK+ADFG C +F GTP ++APEV+
Sbjct: 119 ENKIVYRDLKLDNLLLDTEGFVKIADFG----LCKEGMGFGDRTSTFCGTPEFLAPEVLT 174
Query: 124 AMDEGQYDGKVDVWSLGITPGSLKDPEIAEL------FDKEDPEKIFEDLREIGHGSFGA 177
E Y VD W LG+ I E+ F +D E++F+ +
Sbjct: 175 ---ETSYTRAVDWWGLGVL--------IYEMLVGESPFPGDDEEEVFDSIVN------DE 217
Query: 178 VYYARCLVSREIVAIKKMSYLGKQCAEK 205
V Y R L SRE ++I M L ++ E+
Sbjct: 218 VRYPRFL-SREAISI--MRRLLRRNPER 242
Score = 81.7 bits (202), Expect = 1e-16
Identities = 72/251 (28%), Positives = 99/251 (39%), Gaps = 70/251 (27%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILK--EIRFLRQLK- 220
F L +G G FG V A + E+ AIK A K DI+ E+ L K
Sbjct: 1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIK---------ALKKGDIIARDEVESLMCEKR 51
Query: 221 ---------HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQ 271
HP + C+ + VMEY G D++ H+
Sbjct: 52 IFETANSERHPFLVNLFACFQTEDHVCFVMEYAAGG--DLM--------MHI-------- 93
Query: 272 QLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 331
F+E A+F A C V+ GL YLH ++RD+K N+LL
Sbjct: 94 HTDVFSEPRAVF--------------YAAC--VVLGLQYLHENKIVYRDLKLDNLLLDTE 137
Query: 332 GTVKLADFGSASIKCPAN--------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 383
G VK+ADFG C +F GTP ++APEV+ E Y VD W LG+
Sbjct: 138 GFVKIADFG----LCKEGMGFGDRTSTFCGTPEFLAPEVLT---ETSYTRAVDWWGLGVL 190
Query: 384 CIELAERKPPY 394
E+ + P+
Sbjct: 191 IYEMLVGESPF 201
Score = 42.7 bits (101), Expect = 4e-04
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 617 VMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 676
VMEY G ++ +H E + V+ GL YLH ++RD+K N+LL G
Sbjct: 80 VMEYAAGGDL-MMHIHTDVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEG 138
Query: 677 TVKL 680
VK+
Sbjct: 139 FVKI 142
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 85.9 bits (212), Expect = 4e-17
Identities = 79/278 (28%), Positives = 126/278 (45%), Gaps = 62/278 (22%)
Query: 156 DKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRF 215
D E +E +++IG+G FG V+ + ++E K +SY G + EK + ++ E+
Sbjct: 7 DGESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREK-SQLVIEVNV 65
Query: 216 LRQLKHPNTIEYRGCYLR--DHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQL 273
+R+LKH N + Y +L + +++ME+C A D + +Q
Sbjct: 66 MRELKHKNIVRYIDRFLNKANQKLYILMEFC--DAGD---------------LSRNIQ-- 106
Query: 274 KCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGR-------IHRDVKAGNI 326
KC+ +F ++E I I +L L Y H+L +HRD+K NI
Sbjct: 107 KCYK----MFG------KIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNI 156
Query: 327 LLTETGT------------------VKLADFG---SASIKCPANSFVGTPYWMAPEVILA 365
L+ TG K+ DFG + I+ A+S VGTPY+ +PE++L
Sbjct: 157 FLS-TGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLL- 214
Query: 366 MDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMSAL 403
+ YD K D+W+LG EL K P+ N S L
Sbjct: 215 HETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQL 252
Score = 62.4 bits (151), Expect = 6e-10
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 36/169 (21%)
Query: 6 SLLRQLKHPNTIEYRGCYLR--DHTAWLVMEYCLGS--ASDIIEVHKR--PLKEEEIAAI 59
+++R+LKH N + Y +L + +++ME+C + +I + +K ++E I I
Sbjct: 64 NVMRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDI 123
Query: 60 CSGVLRGLNYLHSLGR-------IHRDVKAGNILLTETGT------------------VK 94
+L L Y H+L +HRD+K NI L+ TG K
Sbjct: 124 TRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLS-TGIRHIGKITAQANNLNGRPIAK 182
Query: 95 LADFG---SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
+ DFG + I+ A+S VGTPY+ +PE++L + YD K D+W+LG
Sbjct: 183 IGDFGLSKNIGIESMAHSCVGTPYYWSPELLL-HETKSYDDKSDMWALG 230
>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src
kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; C-terminal Src kinase (Csk)
subfamily; catalytic (c) domain. The Csk subfamily is
composed of Csk, Chk, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk and Chk are translocated to the membrane via binding
to specific transmembrane proteins, G-proteins, or
adaptor proteins near the membrane. Csk catalyzes the
tyr phosphorylation of the regulatory C-terminal tail of
Src kinases, resulting in their inactivation. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As negative regulators of Src
kinases, Csk and Chk play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression.
Length = 256
Score = 81.3 bits (201), Expect = 5e-17
Identities = 59/216 (27%), Positives = 84/216 (38%), Gaps = 45/216 (20%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWAD-ILKEIRFLRQLKHPNTIEYR 228
IG G FG V + VA+K + + A L E + L+HPN ++
Sbjct: 14 IGKGEFGDVMLG--DYRGQKVAVKCL-----KDDSTAAQAFLAEASVMTTLRHPNLVQLL 66
Query: 229 GCYLRDHTAWLVMEYCL-GSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEV 287
G L+ + ++V EY GS D + R V L Q F
Sbjct: 67 GVVLQGNPLYIVTEYMAKGSLVDYLR----SRGRAV----ITLAQQLGFALD-------- 110
Query: 288 HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCP 347
+C G + YL +HRD+ A N+L++E K++DFG A
Sbjct: 111 ------------VCEG----MEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQ 154
Query: 348 ANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGI 382
P W APE A+ E ++ K DVWS GI
Sbjct: 155 GQDSGKLPVKWTAPE---ALREKKFSTKSDVWSFGI 187
Score = 73.6 bits (181), Expect = 2e-14
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Query: 3 AGSSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRPLKE-EEIAAIC 60
A +S++ L+HPN ++ G L+ + ++V EY GS D + R + +
Sbjct: 49 AEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFA 108
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPY-WMAP 119
V G+ YL +HRD+ A N+L++E K++DFG A P W AP
Sbjct: 109 LDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTAP 168
Query: 120 EVILAMDEGQYDGKVDVWSLGI 141
E A+ E ++ K DVWS GI
Sbjct: 169 E---ALREKKFSTKSDVWSFGI 187
Score = 35.8 bits (83), Expect = 0.057
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 616 LVMEYCL-GSASDIIEVHKRPLKE-EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
+V EY GS D + R + + V G+ YL +HRD+ A N+L++
Sbjct: 77 IVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVS 136
Query: 674 ETGTVKLD----TPDEQAGNDSSK 693
E K+ + G DS K
Sbjct: 137 EDLVAKVSDFGLAKEASQGQDSGK 160
>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 1 from higher
eukaryotes-like. Serine/Threonine Kinases (STKs),
Cyclin-Dependent protein Kinase 1 (CDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes. CDK1 is also called Cell division control
protein 2 (Cdc2) or p34 protein kinase, and is regulated
by cyclins A, B, and E. The CDK1/cyclin A complex
controls G2 phase entry and progression. CDK1/cyclin A2
has also been implicated as an important regulator of S
phase events. The CDK1/cyclin B complex is critical for
G2 to M phase transition. It induces mitosis by
activating nuclear enzymes that regulate chromatin
condensation, nuclear membrane degradation,
mitosis-specific microtubule and cytoskeletal
reorganization. CDK1 also associates with cyclin E and
plays a role in the entry into S phase. CDK1
transcription is stable throughout the cell cycle but is
modulated in some pathological conditions. It may play a
role in regulating apoptosis under these conditions. In
breast cancer cells, HER2 can mediate apoptosis by
inactivating CDK1. Activation of CDK1 may contribute to
HIV-1 induced apoptosis and neuronal apoptosis in
neurodegenerative diseases.
Length = 285
Score = 81.7 bits (202), Expect = 6e-17
Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 38/233 (16%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+ + +IG G++G VY R + +IVA+KK+ L + + ++EI L++L+HPN
Sbjct: 2 YTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIR-LESEEEGVPSTAIREISLLKELQHPN 60
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ + +++ +L+ EF + L L
Sbjct: 61 IVCLQDVLMQESRLYLIF------------------EFLSMDLKKYLDSLP--------- 93
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA- 342
+ + E + + +L+G+ + HS +HRD+K N+L+ G +KLADFG A
Sbjct: 94 ----KGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLAR 149
Query: 343 SIKCPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP 392
+ P + V T ++ APEV+L +Y VD+WS+G E+A +KP
Sbjct: 150 AFGIPVRVYTHEVVTLWYRAPEVLLG--SPRYSTPVDIWSIGTIFAEMATKKP 200
Score = 74.0 bits (182), Expect = 2e-14
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 24/177 (13%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC---LGSASDIIEVHKRPLKEEEIAAICSG 62
SLL++L+HPN + + +++ +L+ E+ L D + + + E + +
Sbjct: 51 SLLKELQHPNIVCLQDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQY-MDAELVKSYLYQ 109
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSF---VGTPYWMA 118
+L+G+ + HS +HRD+K N+L+ G +KLADFG A + P + V T ++ A
Sbjct: 110 ILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRA 169
Query: 119 PEVILAMDEGQYDGKVDVWSLG------ITPGSL--KDPEIAELFDKEDPEKIFEDL 167
PEV+L +Y VD+WS+G T L D EI +LF +IF L
Sbjct: 170 PEVLLG--SPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLF------RIFRIL 218
Score = 32.8 bits (75), Expect = 0.70
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+L+G+ + HS +HRD+K N+L+ G +KL
Sbjct: 110 ILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKL 142
>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase Like 5.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 5 (CDKL5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. Mutations in the gene encoding CDKL5,
previously called STK9, are associated with early onset
epilepsy and severe mental retardation [X-linked
infantile spasm syndrome (ISSX) or West syndrome]. In
addition, CDKL5 mutations also sometimes cause a
phenotype similar to Rett syndrome (RTT), a progressive
neurodevelopmental disorder. These pathogenic mutations
are located in the N-terminal portion of the protein
within the kinase domain.
Length = 287
Score = 81.2 bits (200), Expect = 9e-17
Identities = 67/250 (26%), Positives = 116/250 (46%), Gaps = 42/250 (16%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
FE L +G G++G V R ++EIVAIKK ++ E L+E++ LR LK N
Sbjct: 3 FEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKD-SEENEEVKETTLRELKMLRTLKQEN 61
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+E + + R +LV EY +E+ N L+ L
Sbjct: 62 IVELKEAFRRRGKLYLVFEY-------------VEK--------NMLELL---------- 90
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA- 342
E + E++ + +++ +++ H +HRD+K N+L++ +KL DFG A
Sbjct: 91 --EEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFAR 148
Query: 343 --SIKCPAN--SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMN 398
S AN +V T ++ +PE++L Y VD+WS+G EL++ +P + +
Sbjct: 149 NLSEGSNANYTEYVATRWYRSPELLLG---APYGKAVDMWSVGCILGELSDGQPLFPGES 205
Query: 399 AMSALYHIAQ 408
+ L+ I +
Sbjct: 206 EIDQLFTIQK 215
Score = 72.7 bits (178), Expect = 6e-14
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 16/162 (9%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
+LR LK N +E + + R +LV EY + +++E + E++ + +++
Sbjct: 53 MLRTLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKA 112
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SIKCPAN--SFVGTPYWMAPEV 121
+++ H +HRD+K N+L++ +KL DFG A S AN +V T ++ +PE+
Sbjct: 113 IHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPEL 172
Query: 122 ILAMDEGQYDGKVDVWSLGITPGSLKD--------PEIAELF 155
+L Y VD+WS+G G L D EI +LF
Sbjct: 173 LLG---APYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLF 211
Score = 33.4 bits (76), Expect = 0.44
Identities = 15/65 (23%), Positives = 35/65 (53%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LV EY + +++E + E++ + +++ +++ H +HRD+K N+L++
Sbjct: 77 LVFEYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHN 136
Query: 676 GTVKL 680
+KL
Sbjct: 137 DVLKL 141
>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 1. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously
expressed and is under transcriptional control of
numerous stimuli including cell stress (cell shrinkage),
serum, hormones (gluco- and mineralocorticoids),
gonadotropins, growth factors, interleukin-6, and other
cytokines. It plays roles in sodium retention and
potassium elimination in the kidney, nutrient transport,
salt sensitivity, memory consolidation, and cardiac
repolarization. A common SGK1 variant is associated with
increased blood pressure and body weight. SGK1 may also
contribute to tumor growth, neurodegeneration, fibrosing
disease, and ischemia.
Length = 325
Score = 82.0 bits (202), Expect = 1e-16
Identities = 75/237 (31%), Positives = 103/237 (43%), Gaps = 47/237 (19%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIK---KMSYLGKQCAEKWADILKEIR-FLRQLKHPNTI 225
IG GSFG V AR + A+K K + L K+ EK I+ E L+ +KHP +
Sbjct: 3 IGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKK-EEK--HIMSERNVLLKNVKHPFLV 59
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
+ + V++Y G E +H LQ+ +CF E A F
Sbjct: 60 GLHFSFQTADKLYFVLDYINGG----------ELFYH-------LQRERCFLEPRARF-- 100
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK 345
EIA+ L YLHSL ++RD+K NILL G + L DFG
Sbjct: 101 -------YAAEIAS-------ALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKEN 146
Query: 346 CPANS----FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMN 398
N F GTP ++APEV + + YD VD W LG E+ PP+++ N
Sbjct: 147 IEHNGTTSTFCGTPEYLAPEV---LHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN 200
Score = 65.4 bits (159), Expect = 3e-11
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 1 MPAGSSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAIC 60
M + LL+ +KHP + + + V++Y G +R E
Sbjct: 43 MSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYA 102
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANS----FVGTPYW 116
+ + L YLHSL ++RD+K NILL G + L DFG N F GTP +
Sbjct: 103 AEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEY 162
Query: 117 MAPEVILAMDEGQYDGKVDVWSLG 140
+APEV + + YD VD W LG
Sbjct: 163 LAPEV---LHKQPYDRTVDWWCLG 183
Score = 32.7 bits (74), Expect = 0.77
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+ L YLHSL ++RD+K NILL G + L
Sbjct: 105 IASALGYLHSLNIVYRDLKPENILLDSQGHIVL 137
>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine
Kinases, Tyrosine kinase expressed in hepatocellular
carcinoma and Resting lymphocyte kinase. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase expressed
in hepatocellular carcinoma (Tec) and Resting lymphocyte
kinase (Rlk); catalytic (c) domain. The PTKc family is
part of a larger superfamily, that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tec and
Rlk (also named Txk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. Instead of PH, Rlk
contains an N-terminal cysteine-rich region. In addition
to PH, Tec also contains the Tec homology (TH) domain
with proline-rich and zinc-binding regions. Tec kinases
are expressed mainly by haematopoietic cells. Tec is
more widely-expressed than other Tec subfamily kinases.
It is found in endothelial cells, both B- and T-cells,
and a variety of myeloid cells including mast cells,
erythroid cells, platelets, macrophages and neutrophils.
Rlk is expressed in T-cells and mast cell lines. Tec and
Rlk are both key components of T-cell receptor (TCR)
signaling. They are important in TCR-stimulated
proliferation, IL-2 production and phopholipase C-gamma1
activation.
Length = 256
Score = 79.9 bits (197), Expect = 1e-16
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 62/242 (25%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIE 226
++E+G G FG V+ + ++ VAIK ++ G E D ++E + + +L HP ++
Sbjct: 9 MKELGSGQFGVVHLGK-WRAQIKVAIKAINE-GAMSEE---DFIEEAKVMMKLSHPKLVQ 63
Query: 227 YRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFE 286
G + ++V E F E+ L N+
Sbjct: 64 LYGVCTQQKPLYIVTE---------------------------------FMENGCLLNYL 90
Query: 287 VHKR-PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----- 340
++ L ++ + ++C V G+ YL IHRD+ A N L++ TG VK++DFG
Sbjct: 91 RQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYV 150
Query: 341 -------SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKP 392
S+ K P W PEV +Y K DVWS G+ E+ E K
Sbjct: 151 LDDEYTSSSGAKFPVK-------WSPPEVFNF---SKYSSKSDVWSFGVLMWEVFTEGKM 200
Query: 393 PY 394
P+
Sbjct: 201 PF 202
Score = 66.4 bits (162), Expect = 6e-12
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 23/150 (15%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGV 63
+ ++ +L HP ++ G + ++V E+ G + + + L ++ + ++C V
Sbjct: 50 AKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDV 109
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG------------SASIKCPANSFV 111
G+ YL IHRD+ A N L++ TG VK++DFG S+ K P
Sbjct: 110 CEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVK--- 166
Query: 112 GTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
W PEV +Y K DVWS G+
Sbjct: 167 ----WSPPEVFNF---SKYSSKSDVWSFGV 189
Score = 40.6 bits (95), Expect = 0.002
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 636 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
L ++ + ++C V G+ YL IHRD+ A N L++ TG VK+
Sbjct: 97 LSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKV 141
>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C iota.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, iota isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-iota is directly implicated in carcinogenesis. It is
critical to oncogenic signaling mediated by Ras and
Bcr-Abl. The PKC-iota gene is the target of
tumor-specific gene amplification in many human cancers,
and has been identified as a human oncogene. In addition
to its role in transformed growth, PKC-iota also
promotes invasion, chemoresistance, and tumor cell
survival. Expression profiling of PKC-iota is a
prognostic marker of poor clinical outcome in several
human cancers. PKC-iota also plays a role in
establishing cell polarity, and has critical embryonic
functions.
Length = 329
Score = 81.3 bits (200), Expect = 2e-16
Identities = 77/309 (24%), Positives = 123/309 (39%), Gaps = 57/309 (18%)
Query: 168 REIGHGSFGAVYYARCLVSREIVAIK--KMSYLGKQCAEKWADILKEIRFLRQLKHPNTI 225
R IG GS+ V R + I A+K K + W K + F + HP +
Sbjct: 1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHV-FEQASNHPFLV 59
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
C+ + + V+EY G D++ FH++
Sbjct: 60 GLHSCFQTESRLFFVIEYVNGG--DLM--------FHMQ--------------------- 88
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK 345
+R L EE + + LNYLH G I+RD+K N+LL G +KL D+G
Sbjct: 89 --RQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 146
Query: 346 C-PANS---FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMS 401
P ++ F GTP ++APE++ D Y VD W+LG+ E+ + P F++
Sbjct: 147 LRPGDTTSTFCGTPNYIAPEILRGED---YGFSVDWWALGVLMFEMMAGRSP-FDI---- 198
Query: 402 ALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTP----CLQS 457
+ +D P + D+ + + I R P ++ A S L D C
Sbjct: 199 ----VGSSDNPDQNTEDY-LFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQ 253
Query: 458 SDWSDTFAH 466
+ ++D H
Sbjct: 254 TGFADIQGH 262
Score = 72.0 bits (176), Expect = 2e-13
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 13 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHS 72
HP + C+ + + V+EY G +R L EE + + LNYLH
Sbjct: 55 HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHE 114
Query: 73 LGRIHRDVKAGNILLTETGTVKLADFGSASIKC-PANS---FVGTPYWMAPEVILAMDEG 128
G I+RD+K N+LL G +KL D+G P ++ F GTP ++APE++ D
Sbjct: 115 RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGED-- 172
Query: 129 QYDGKVDVWSLGI 141
Y VD W+LG+
Sbjct: 173 -YGFSVDWWALGV 184
Score = 40.8 bits (95), Expect = 0.002
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 609 SSLFSPQLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAG 668
S LF V+EY G +R L EE + + LNYLH G I+RD+K
Sbjct: 69 SRLF---FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLD 125
Query: 669 NILLTETGTVKL 680
N+LL G +KL
Sbjct: 126 NVLLDSEGHIKL 137
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; catalytic (c) domain (repeat 2). The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal catalytic tyr kinase domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger
downstream signaling events such as the phosphorylation
of signal transducers and activators of transcription
(STATs). Jak2 is widely expressed in many tissues while
Jak3 is expressed only in hematopoietic cells. Jak2 is
essential for the signaling of hormone-like cytokines
such as growth hormone, erythropoietin, thrombopoietin,
and prolactin, as well as some IFNs and cytokines that
signal through the IL-3 and gp130 receptors. Jak3 binds
the shared receptor subunit common gamma chain and thus,
is essential in the signaling of cytokines that use it
such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
Disruption of Jak2 in mice results in an embryonic
lethal phenotype with multiple defects including
erythropoietic and cardiac abnormalities. It is the only
Jak gene that results in a lethal phenotype when
disrupted in mice. A mutation in the pseudokinase domain
of Jak2, V617F, is present in many myeloproliferative
diseases, including almost all patients with
polycythemia vera, and 50% of patients with essential
thrombocytosis and myelofibrosis. Jak3 is important in
lymphoid development and myeloid cell differentiation.
Inactivating mutations in Jak3 have been reported in
humans with severe combined immunodeficiency (SCID).
Length = 284
Score = 80.2 bits (198), Expect = 2e-16
Identities = 73/276 (26%), Positives = 114/276 (41%), Gaps = 81/276 (29%)
Query: 167 LREIGHGSFGAVYYARCLV----SREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHP 222
++++G G+FG+V R + E+VA+KK+ + AE D +EI L+ L+H
Sbjct: 9 IQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST---AEHLRDFEREIEILKSLQHD 65
Query: 223 NTIEYRG-CY------LRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLK 274
N ++Y+G CY LR LVMEY GS D ++ H + +
Sbjct: 66 NIVKYKGVCYSAGRRNLR-----LVMEYLPYGSLRDYLQKH----------------RER 104
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
L+ + IC +G+ YL S +HRD+ NIL+ V
Sbjct: 105 LDHRKLLLYASQ-------------IC----KGMEYLGSKRYVHRDLATRNILVESENRV 147
Query: 335 KLADFGSASI----------KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITC 384
K+ DFG + + P S + +W APE ++ E ++ DVWS G+
Sbjct: 148 KIGDFGLTKVLPQDKEYYKVREPGESPI---FWYAPE---SLTESKFSVASDVWSFGVVL 201
Query: 385 IEL-----AERKPPYFNMNAM-------SALYHIAQ 408
EL PP M M +YH+ +
Sbjct: 202 YELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIE 237
Score = 74.4 bits (183), Expect = 2e-14
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 43/188 (22%)
Query: 7 LLRQLKHPNTIEYRG-CY------LRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAA 58
+L+ L+H N ++Y+G CY LR LVMEY GS D ++ H+ L ++
Sbjct: 58 ILKSLQHDNIVKYKGVCYSAGRRNLR-----LVMEYLPYGSLRDYLQKHRERLDHRKLLL 112
Query: 59 ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI----------KCPAN 108
S + +G+ YL S +HRD+ NIL+ VK+ DFG + + P
Sbjct: 113 YASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGE 172
Query: 109 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKED----PEKIF 164
S + +W APE ++ E ++ DVWS G+ + ELF D P F
Sbjct: 173 SPI---FWYAPE---SLTESKFSVASDVWSFGVV--------LYELFTYSDKSCSPPAEF 218
Query: 165 EDLREIGH 172
+R +G+
Sbjct: 219 --MRMMGN 224
Score = 41.3 bits (97), Expect = 0.001
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 615 QLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
+LVMEY GS D ++ H+ L ++ S + +G+ YL S +HRD+ NIL+
Sbjct: 83 RLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVE 142
Query: 674 ETGTVKL 680
VK+
Sbjct: 143 SENRVKI 149
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 81.0 bits (200), Expect = 2e-16
Identities = 63/231 (27%), Positives = 99/231 (42%), Gaps = 40/231 (17%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYRG 229
+G G+FG V R + + A+K + ++ A L E R L+ +HP +
Sbjct: 3 LGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKY 62
Query: 230 CYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEVHK 289
+ VMEY G E FH L + + F+E A F
Sbjct: 63 SFQTHDRLCFVMEYANGG----------ELFFH-------LSRERVFSEDRARF------ 99
Query: 290 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASIK 345
E ++A L YLHS ++RD+K N++L + G +K+ DFG S
Sbjct: 100 --YGAEIVSA--------LGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDG 149
Query: 346 CPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
+F GTP ++APEV +++ Y VD W LG+ E+ + P++N
Sbjct: 150 ATMKTFCGTPEYLAPEV---LEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN 197
Score = 72.2 bits (177), Expect = 1e-13
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVL 64
S +L+ +HP + + VMEY G +R E+ + ++
Sbjct: 46 SRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIV 105
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASIKCPANSFVGTPYWMAPE 120
L YLHS ++RD+K N++L + G +K+ DFG S +F GTP ++APE
Sbjct: 106 SALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPE 165
Query: 121 VILAMDEGQYDGKVDVWSLGITP-----GSLKDPEIAELFDKEDPEKIFE 165
V +++ Y VD W LG+ G L F +D EK+FE
Sbjct: 166 V---LEDNDYGRAVDWWGLGVVMYEMMCGRLP-------FYNQDHEKLFE 205
Score = 35.6 bits (82), Expect = 0.085
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 617 VMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 676
VMEY G +R E+ + ++ L YLHS ++RD+K N++L + G
Sbjct: 73 VMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDG 132
Query: 677 TVKL 680
+K+
Sbjct: 133 HIKI 136
>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine
Kinases, Discoidin Domain Receptors. Protein Tyrosine
Kinase (PTK) family; Discoidin Domain Receptor (DDR)
subfamily; catalytic (c) domain. The DDR subfamily
consists of homologs of mammalian DDR1, DDR2, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
DDR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular discoidin homology domain, a
transmembrane segment, an extended juxtamembrane region,
and an intracellular catalytic domain. The binding of
the ligand, collagen, to DDRs results in a slow but
sustained receptor activation. DDRs regulate cell
adhesion, proliferation, and extracellular matrix
remodeling. They have been linked to a variety of human
cancers including breast, colon, ovarian, brain, and
lung. There is no evidence showing that DDRs act as
transforming oncogenes. They are more likely to play a
role in the regulation of tumor growth and metastasis.
Length = 296
Score = 80.5 bits (199), Expect = 2e-16
Identities = 65/267 (24%), Positives = 99/267 (37%), Gaps = 63/267 (23%)
Query: 158 EDPEKIFEDLREIGHGSFGAVYYARCLV----SREIVAIKKMSYLGKQCAEKW------- 206
E P + + ++G G FG V+ S + A + A K
Sbjct: 1 EFPRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASD 60
Query: 207 ---ADILKEIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEY-CLGSASDIIEVHWIEREFH 262
D LKE++ L +L PN G D ++MEY G
Sbjct: 61 NAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGD--------------- 105
Query: 263 VEGMGNRLQQLKCFTEHFALFNFEVH-KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDV 321
L Q +H A + + L + + + + G+ YL SL +HRD+
Sbjct: 106 -------LNQF--LQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDL 156
Query: 322 KAGNILLTETGTVKLADFGSASIKCPANSFVGTPY-----------WMAPEVILAMDEGQ 370
N L+ + T+K+ADFG + N + Y WMA E +L G+
Sbjct: 157 ATRNCLVGKNYTIKIADFGMSR-----NLYSSDYYRVQGRAPLPIRWMAWESVLL---GK 208
Query: 371 YDGKVDVWSLGITCIE---LAERKPPY 394
+ K DVW+ G+T E L R+ PY
Sbjct: 209 FTTKSDVWAFGVTLWEILTLC-REQPY 234
Score = 63.5 bits (155), Expect = 8e-11
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 30/157 (19%)
Query: 8 LRQLKHPNTIEYRGCYLRDHTAWLVMEY-CLGSASDIIEVH----------KRPLKEEEI 56
L +L PN G D ++MEY G + ++ H + L +
Sbjct: 73 LSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTL 132
Query: 57 AAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPY- 115
+ + + G+ YL SL +HRD+ N L+ + T+K+ADFG + N + Y
Sbjct: 133 LYMATQIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSR-----NLYSSDYYR 187
Query: 116 ----------WMAPEVILAMDEGQYDGKVDVWSLGIT 142
WMA E +L G++ K DVW+ G+T
Sbjct: 188 VQGRAPLPIRWMAWESVLL---GKFTTKSDVWAFGVT 221
>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase,
Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps)
kinase subfamily; catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes kinase is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells. It plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. A recent study implicates Fes
kinase as a tumor suppressor in colorectal cancer.
Length = 252
Score = 79.3 bits (195), Expect = 2e-16
Identities = 67/242 (27%), Positives = 96/242 (39%), Gaps = 54/242 (22%)
Query: 169 EIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKW-----ADILKEIRFLRQLKHPN 223
IG G+FG V+ R VA+K C E A L+E R L+Q HPN
Sbjct: 2 RIGRGNFGEVFSGRLRADNTPVAVK-------SCRETLPPDLKAKFLQEARILKQYSHPN 54
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ G + ++VME G G+ L L+
Sbjct: 55 IVRLIGVCTQKQPIYIVMELVQG--------------------GDFLTFLRTEGPR---- 90
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA- 342
LK +E+ + G+ YL S IHRD+ A N L+TE +K++DFG +
Sbjct: 91 --------LKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSR 142
Query: 343 ----SIKCPANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIE-LAERKPPYFN 396
+ P W APE A++ G+Y + DVWS GI E + PY N
Sbjct: 143 EEEDGVYASTGGMKQIPVKWTAPE---ALNYGRYSSESDVWSFGILLWEAFSLGAVPYAN 199
Query: 397 MN 398
++
Sbjct: 200 LS 201
Score = 71.2 bits (174), Expect = 1e-13
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRP-LKEEEIAAICSGVLR 65
+L+Q HPN + G + ++VME G + P LK +E+ +
Sbjct: 46 ILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAA 105
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-----SIKCPANSFVGTPY-WMAP 119
G+ YL S IHRD+ A N L+TE +K++DFG + + P W AP
Sbjct: 106 GMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAP 165
Query: 120 EVILAMDEGQYDGKVDVWSLGI 141
E A++ G+Y + DVWS GI
Sbjct: 166 E---ALNYGRYSSESDVWSFGI 184
Score = 34.2 bits (78), Expect = 0.20
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 636 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
LK +E+ + G+ YL S IHRD+ A N L+TE +K+
Sbjct: 91 LKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKI 135
>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 2. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more
restricted distribution that SGK1 and is most abundantly
expressed in epithelial tissues including kidney, liver,
pancreas, and the choroid plexus of the brain. In vitro
cellular assays show that SGK2 can stimulate the
activity of ion channels, the glutamate transporter
EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Length = 321
Score = 80.4 bits (198), Expect = 3e-16
Identities = 74/243 (30%), Positives = 107/243 (44%), Gaps = 48/243 (19%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIK---KMSYLGKQCAEKWADILKEIR-FLRQLKHPNTI 225
IG GSFG V A+ A+K K + L K+ + I+ E L+ LKHP +
Sbjct: 3 IGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKK---EQNHIMAERNVLLKNLKHPFLV 59
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
+ + V++Y G E FH LQ+ +CF E A F
Sbjct: 60 GLHYSFQTAEKLYFVLDYVNGG----------ELFFH-------LQRERCFLEPRARF-- 100
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----S 341
E+A+ + YLHSL I+RD+K NILL G V L DFG
Sbjct: 101 -------YAAEVAS-------AIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEG 146
Query: 342 ASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMS 401
+ ++F GTP ++APEV + + YD VD W LG E+ PP+++ + +S
Sbjct: 147 VEPEETTSTFCGTPEYLAPEV---LRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRD-VS 202
Query: 402 ALY 404
+Y
Sbjct: 203 QMY 205
Score = 69.2 bits (169), Expect = 1e-12
Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Query: 1 MPAGSSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAIC 60
M + LL+ LKHP + + + V++Y G +R E
Sbjct: 43 MAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQRERCFLEPRARFYA 102
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASIKCPANSFVGTPYW 116
+ V + YLHSL I+RD+K NILL G V L DFG + ++F GTP +
Sbjct: 103 AEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEY 162
Query: 117 MAPEVILAMDEGQYDGKVDVWSLG 140
+APEV + + YD VD W LG
Sbjct: 163 LAPEV---LRKEPYDRTVDWWCLG 183
Score = 33.8 bits (77), Expect = 0.29
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
V + YLHSL I+RD+K NILL G V L
Sbjct: 105 VASAIGYLHSLNIIYRDLKPENILLDSQGHVVL 137
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 3. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK3 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGK3 is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. SGK3 also regulates many transporters,
ion channels, and receptors. It plays a critical role in
hair follicle morphogenesis and hair cycling.
Length = 325
Score = 80.4 bits (198), Expect = 3e-16
Identities = 71/264 (26%), Positives = 108/264 (40%), Gaps = 44/264 (16%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIR-FLRQLKHPNTIEYR 228
IG GSFG V A+ + + A+K + ++ I+ E L+ +KHP +
Sbjct: 3 IGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLH 62
Query: 229 GCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEVH 288
+ + V+++ G E FH LQ+ + F E A F
Sbjct: 63 YSFQTTEKLYFVLDFVNGG----------ELFFH-------LQRERSFPEPRARF----- 100
Query: 289 KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASI 344
A I S L YLHS+ ++RD+K NILL G V L DFG +
Sbjct: 101 -------YAAEIASA----LGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQ 149
Query: 345 KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMSA-- 402
+F GTP ++APEVI + YD VD W LG E+ PP++ +
Sbjct: 150 SDTTTTFCGTPEYLAPEVI---RKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYD 206
Query: 403 -LYHIAQNDTPCLQSSDWSVIKTI 425
+ H P + WS+++ +
Sbjct: 207 NILHKPLVLRPGASLTAWSILEEL 230
Score = 68.1 bits (166), Expect = 4e-12
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 7/144 (4%)
Query: 1 MPAGSSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAIC 60
M + LL+ +KHP + + + V+++ G +R E
Sbjct: 43 MAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQRERSFPEPRARFYA 102
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASIKCPANSFVGTPYW 116
+ + L YLHS+ ++RD+K NILL G V L DFG + +F GTP +
Sbjct: 103 AEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEY 162
Query: 117 MAPEVILAMDEGQYDGKVDVWSLG 140
+APEVI + YD VD W LG
Sbjct: 163 LAPEVI---RKQPYDNTVDWWCLG 183
Score = 32.7 bits (74), Expect = 0.68
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 651 GLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
L YLHS+ ++RD+K NILL G V L
Sbjct: 108 ALGYLHSINIVYRDLKPENILLDSQGHVVL 137
>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine
Kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Spleen Tyrosine Kinase (Syk)
subfamily; catalytic (c) domain. The Syk subfamily is
composed of Syk, ZAP-70, Shark, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing two Src homology 2 (SH2) domains
N-terminal to the catalytic tyr kinase domain. They are
involved in the signaling downstream of activated
receptors (including B-cell, T-cell, and Fc receptors)
that contain ITAMs (immunoreceptor tyr activation
motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. Syk is important in B-cell
receptor (BCR) signaling, while Zap-70 is primarily
expressed in T-cells and NK cells, and is a crucial
component in T-cell receptor (TCR) signaling. Syk also
plays a central role in Fc receptor-mediated
phagocytosis in the adaptive immune system. Shark is
exclusively expressed in ectodermally derived epithelia,
and is localized preferentially to the apical surface of
the epithelial cells, it may play a role in a signaling
pathway for epithelial cell polarity.
Length = 257
Score = 78.9 bits (195), Expect = 4e-16
Identities = 62/248 (25%), Positives = 95/248 (38%), Gaps = 64/248 (25%)
Query: 168 REIGHGSFGAV---YYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
+E+GHG+FG+V Y VA+K + +K + L+E + QL HP
Sbjct: 1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKK--EFLREASVMAQLDHPCI 58
Query: 225 IEYRGCYLRDHTAW-LVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ G + LVME + +G L
Sbjct: 59 VRLIGVCKGE--PLMLVME--------------------LAPLG-------------PLL 83
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SA 342
+ +R + ++ + V G+ YL S +HRD+ A N+LL K++DFG S
Sbjct: 84 KYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSR 143
Query: 343 SIKCPANSFVGTPY------------WMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 390
++ G+ Y W APE I + G++ K DVWS G+T E
Sbjct: 144 ALG------AGSDYYRATTAGRWPLKWYAPECI---NYGKFSSKSDVWSYGVTLWEAFSY 194
Query: 391 -KPPYFNM 397
PY M
Sbjct: 195 GAKPYGEM 202
Score = 67.0 bits (164), Expect = 3e-12
Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 38/174 (21%)
Query: 10 QLKHPNTIEYRGCYLRDHTAW-LVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGL 67
QL HP + G + LVME LG + +R + ++ + V G+
Sbjct: 52 QLDHPCIVRLIGVCKGE--PLMLVMELAPLGPLLKYL-KKRREIPVSDLKELAHQVAMGM 108
Query: 68 NYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPANSFVGTPY----------- 115
YL S +HRD+ A N+LL K++DFG S ++ G+ Y
Sbjct: 109 AYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALG------AGSDYYRATTAGRWPL 162
Query: 116 -WMAPEVILAMDEGQYDGKVDVWSLGIT----------P-GSLKDPEIAELFDK 157
W APE I + G++ K DVWS G+T P G +K E+ + +
Sbjct: 163 KWYAPECI---NYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLES 213
Score = 38.9 bits (91), Expect = 0.007
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 616 LVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
LVME LG + +R + ++ + V G+ YL S +HRD+ A N+LL
Sbjct: 72 LVMELAPLGPLLKYL-KKRREIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVN 130
Query: 675 TGTVKL 680
K+
Sbjct: 131 RHQAKI 136
>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-2 is
specifically expressed in neurons in the central nervous
system, mainly in terminally differentiated neurons. It
associates with Trap (Tudor repeat associator with
PCTAIRE-2) and could play a role in regulating
mitochondrial function in neurons.
Length = 309
Score = 79.3 bits (195), Expect = 5e-16
Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 45/232 (19%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIE 226
L ++G G++ V+ R ++ +VA+K++ ++ A A ++E+ L+ LKH N +
Sbjct: 11 LEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTA--IREVSLLKDLKHANIVT 68
Query: 227 YRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREF--HVEGMGNRLQQLKCFTEHFALFN 284
D + LV EY ++++ +++ GN + + +F
Sbjct: 69 LHDIVHTDKSLTLVFEY-------------LDKDLKQYMDDCGNIMS-----MHNVKIFL 110
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI 344
+++ LRGL Y H +HRD+K N+L+ E G +KLADFG A
Sbjct: 111 YQI-----------------LRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARA 153
Query: 345 K-CPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP 392
K P ++ V T ++ P+V+L E Y ++D+W +G E+A +P
Sbjct: 154 KSVPTKTYSNEVVTLWYRPPDVLLGSSE--YSTQIDMWGVGCIFFEMASGRP 203
Score = 71.2 bits (174), Expect = 3e-13
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 31/172 (18%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-------LGSASDIIEVHKRPLKEEEIAA 58
SLL+ LKH N + D + LV EY + +I+ +H +
Sbjct: 56 SLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDKDLKQYMDDCGNIMSMHN-------VKI 108
Query: 59 ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK-CPANSF---VGTP 114
+LRGL Y H +HRD+K N+L+ E G +KLADFG A K P ++ V T
Sbjct: 109 FLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTL 168
Query: 115 YWMAPEVILAMDEGQYDGKVDVWSLG-----------ITPGSLKDPEIAELF 155
++ P+V+L E Y ++D+W +G + PGS + E+ +F
Sbjct: 169 WYRPPDVLLGSSE--YSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIF 218
Score = 37.3 bits (86), Expect = 0.023
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+LRGL Y H +HRD+K N+L+ E G +KL
Sbjct: 113 ILRGLAYCHRRKVLHRDLKPQNLLINERGELKL 145
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic
subunit; Provisional.
Length = 340
Score = 79.6 bits (196), Expect = 6e-16
Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 48/257 (18%)
Query: 147 KDPEIAELFDKEDPEKIFED---LREIGHGSFGAVYYARCLVSR-EIVAIKKMSYLGKQC 202
KD + + +++ K +ED +R +G GSFG V A VAIK+ K
Sbjct: 13 KDSDSTKEPKRKNKMK-YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEK-SKII 70
Query: 203 AEKWAD-ILKEIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREF 261
+K D + E + L + HP + G + + +LV+E+ +G EF
Sbjct: 71 KQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGG------------EF 118
Query: 262 HVEGMGNRL--QQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHR 319
N+ + CF + FE YL SL ++R
Sbjct: 119 FTFLRRNKRFPNDVGCFYAAQIVLIFE-----------------------YLQSLNIVYR 155
Query: 320 DVKAGNILLTETGTVKLADFGSASI-KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVW 378
D+K N+LL + G +K+ DFG A + + GTP ++APE++L + G+ D W
Sbjct: 156 DLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGHGK---AADWW 212
Query: 379 SLGITCIELAERKPPYF 395
+LGI E+ PP++
Sbjct: 213 TLGIFIYEILVGCPPFY 229
Score = 68.1 bits (166), Expect = 4e-12
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
+L + HP + G + + +LV+E+ +G + + + ++
Sbjct: 84 ILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLI 143
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI-KCPANSFVGTPYWMAPEVILAM 125
YL SL ++RD+K N+LL + G +K+ DFG A + + GTP ++APE++L +
Sbjct: 144 FEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNV 203
Query: 126 DEGQYDGKVDVWSLGI 141
G+ D W+LGI
Sbjct: 204 GHGK---AADWWTLGI 216
Score = 29.6 bits (66), Expect = 7.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 652 LNYLHSLGRIHRDVKAGNILLTETGTVKL 680
YL SL ++RD+K N+LL + G +K+
Sbjct: 144 FEYLQSLNIVYRDLKPENLLLDKDGFIKM 172
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 80.8 bits (199), Expect = 6e-16
Identities = 47/124 (37%), Positives = 71/124 (57%), Gaps = 19/124 (15%)
Query: 31 LVMEYCLGSASDIIEVHKR------PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGN 84
L+MEY GS D+ + K+ P +E E+ + ++ L+ +HS +HRD+K+ N
Sbjct: 142 LIMEY--GSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSAN 199
Query: 85 ILLTETGTVKLADFG-------SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVW 137
I L TG +KL DFG S S+ A+SF GTPY++APE+ + +Y K D+W
Sbjct: 200 IFLMPTGIIKLGDFGFSKQYSDSVSLDV-ASSFCGTPYYLAPEL---WERKRYSKKADMW 255
Query: 138 SLGI 141
SLG+
Sbjct: 256 SLGV 259
Score = 80.4 bits (198), Expect = 9e-16
Identities = 87/354 (24%), Positives = 140/354 (39%), Gaps = 91/354 (25%)
Query: 149 PEIAELFDKEDPEKIFEDLREI-GHGSFGAVYYA-RCLVSREIVAIKKMSYLGKQCAEKW 206
PE E+ + +P + L + G A + A R +E V + K L + +
Sbjct: 53 PEGEEVPESNNPREHMYVLTTLVGRNPTTAAFVATRGSDPKEKV-VAKFVMLNDERQAAY 111
Query: 207 ADILKEIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGM 266
A E+ L H +++ + D L+MEY GS D+
Sbjct: 112 AR--SELHCLAACDHFGIVKHFDDFKSDDKLLLIMEY--GSGGDL--------------- 152
Query: 267 GNRL--QQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAG 324
N+ Q+LK EH P +E E+ + ++ L+ +HS +HRD+K+
Sbjct: 153 -NKQIKQRLK---EHL----------PFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSA 198
Query: 325 NILLTETGTVKLADFG-------SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDV 377
NI L TG +KL DFG S S+ A+SF GTPY++APE+ + +Y K D+
Sbjct: 199 NIFLMPTGIIKLGDFGFSKQYSDSVSLDV-ASSFCGTPYYLAPEL---WERKRYSKKADM 254
Query: 378 WSLGITCIELAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFN 437
WSLG+ EL P+ ++R+
Sbjct: 255 WSLGVILYELLTLHRPF-------------------------------KGPSQRE----- 278
Query: 438 MNAMSALYHIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLV 491
M + + + PC S + L+KNPA RP++ +LL + +
Sbjct: 279 --IMQQVLYGKYDPFPC----PVSSGMKALLDPLLSKNPALRPTTQQLLHTEFL 326
Score = 44.6 bits (105), Expect = 2e-04
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 616 LVMEYCLGSASDIIEVHKR------PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGN 669
L+MEY GS D+ + K+ P +E E+ + ++ L+ +HS +HRD+K+ N
Sbjct: 142 LIMEY--GSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSAN 199
Query: 670 ILLTETGTVKL 680
I L TG +KL
Sbjct: 200 IFLMPTGIIKL 210
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with
Cyclin-Dependent Kinases (CDKs), which belong to a large
family of STKs that are regulated by their cognate
cyclins. Together, CDKs and cyclins are involved in the
control of cell-cycle progression, transcription, and
neuronal function. The association of PCTAIRE-like
proteins with cyclins has not been widely studied,
although PFTAIRE-1 has been shown to function as a CDK
which is regulated by cyclin D3 as well as the
membrane-associated cyclin Y. PCTAIRE-like proteins show
unusual expression patterns with high levels in
post-mitotic tissues, suggesting that they may be
involved in regulating post-mitotic cellular events.
Length = 291
Score = 79.0 bits (195), Expect = 6e-16
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 41/233 (17%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
++ L ++G GS+ VY R ++ ++VA+K++ ++ A A ++E L+ LKH N
Sbjct: 7 YKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTA--IREASLLKDLKHAN 64
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ T LV EY ++ G G + ++ F F L
Sbjct: 65 IVTLHDIIHTKKTLTLVFEYLDTDLKQYMDDC---------GGGLSMHNVRLFL--FQL- 112
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
LRGL Y H +HRD+K N+L++E G +KLADFG A
Sbjct: 113 ---------------------LRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLAR 151
Query: 344 IKC-PANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP 392
K P+ ++ V T ++ P+V+L E Y +D+W +G E+A +P
Sbjct: 152 AKSVPSKTYSNEVVTLWYRPPDVLLGSTE--YSTSLDMWGVGCIFYEMATGRP 202
Score = 75.1 bits (185), Expect = 1e-14
Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 25/177 (14%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
SLL+ LKH N + T LV EY ++ L + +LR
Sbjct: 55 SLLKDLKHANIVTLHDIIHTKKTLTLVFEYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLR 114
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKC-PANSF---VGTPYWMAPEV 121
GL Y H +HRD+K N+L++E G +KLADFG A K P+ ++ V T ++ P+V
Sbjct: 115 GLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDV 174
Query: 122 ILAMDEGQYDGKVDVWSLG-----------ITPGSLKDPEIAELFDKEDPEKIFEDL 167
+L E Y +D+W +G + PGS D E + KIF L
Sbjct: 175 LLGSTE--YSTSLDMWGVGCIFYEMATGRPLFPGS-TDVE-------DQLHKIFRVL 221
Score = 43.5 bits (103), Expect = 2e-04
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LV EY ++ L + +LRGL Y H +HRD+K N+L++E
Sbjct: 80 LVFEYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISER 139
Query: 676 GTVKL 680
G +KL
Sbjct: 140 GELKL 144
>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR) subfamily; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). The InsR subfamily
is composed of InsR, Insulin-like Growth Factor-1
Receptor (IGF-1R), and similar proteins. PTKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR and
IGF-1R are receptor tyr kinases (RTKs) composed of two
alphabeta heterodimers. Binding of the ligand (insulin,
IGF-1, or IGF-2) to the extracellular alpha subunit
activates the intracellular tyr kinase domain of the
transmembrane beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR and IGF-1R, which share 84%
sequence identity in their kinase domains, display
physiologically distinct yet overlapping functions in
cell growth, differentiation, and metabolism. InsR
activation leads primarily to metabolic effects while
IGF-1R activation stimulates mitogenic pathways. In
cells expressing both receptors, InsR/IGF-1R hybrids are
found together with classical receptors. Both receptors
can interact with common adaptor molecules such as IRS-1
and IRS-2.
Length = 277
Score = 78.5 bits (194), Expect = 6e-16
Identities = 61/250 (24%), Positives = 96/250 (38%), Gaps = 58/250 (23%)
Query: 159 DPEKIFEDLREIGHGSFGAVY--YARCLVSREI---VAIKKMSYLGKQCA--EKWADILK 211
EKI +RE+G GSFG VY A+ +V E VAIK ++ + A + + L
Sbjct: 4 PREKI-TLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVN----ENASMRERIEFLN 58
Query: 212 EIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEY-CLGSASDIIEVHWIEREFHVEGMGNRL 270
E +++ + + G +VME G + E E +
Sbjct: 59 EASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLG---- 114
Query: 271 QQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 330
P ++ + + + G+ YL + +HRD+ A N ++ E
Sbjct: 115 --------------------PPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAE 154
Query: 331 TGTVKLADFGSASIKCPANSFVGTPY------------WMAPEVILAMDEGQYDGKVDVW 378
TVK+ DFG T Y WMAPE ++ +G + K DVW
Sbjct: 155 DLTVKIGDFGM------TRDIYETDYYRKGGKGLLPVRWMAPE---SLKDGVFTTKSDVW 205
Query: 379 SLGITCIELA 388
S G+ E+A
Sbjct: 206 SFGVVLWEMA 215
Score = 62.4 bits (152), Expect = 2e-10
Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 33/160 (20%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEY-CLGSASDIIEVHKRPLKE----------E 54
S++++ + + G +VME G + RP E +
Sbjct: 61 SVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSR-RPEAENNPGLGPPTLQ 119
Query: 55 EIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTP 114
+ + + + G+ YL + +HRD+ A N ++ E TVK+ DFG T
Sbjct: 120 KFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGM------TRDIYETD 173
Query: 115 Y------------WMAPEVILAMDEGQYDGKVDVWSLGIT 142
Y WMAPE ++ +G + K DVWS G+
Sbjct: 174 YYRKGGKGLLPVRWMAPE---SLKDGVFTTKSDVWSFGVV 210
Score = 36.2 bits (84), Expect = 0.049
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 635 PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
P ++ + + + G+ YL + +HRD+ A N ++ E TVK+
Sbjct: 115 PPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKI 160
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src
subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr,
Fyn, Yrk, and Yes. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) tyr kinases which are anchored to the
plasma membrane. They contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, and Lyn show a limited expression pattern.
Length = 261
Score = 77.7 bits (192), Expect = 8e-16
Identities = 64/247 (25%), Positives = 97/247 (39%), Gaps = 63/247 (25%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIE 226
R++G G FG V+ + + VA+K + K L+E + +++L+H
Sbjct: 11 ERKLGAGQFGEVWMGTWNGTTK-VAVKTL----KPGTMSPEAFLQEAQIMKKLRHDK--- 62
Query: 227 YRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGM--GNRLQQLKCFTEHFALFN 284
LV Y + S + I +I E+ M G+ L LK
Sbjct: 63 ------------LVQLYAVCSEEEPI---YIVTEY----MSKGSLLDFLK---------- 93
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-- 342
+ L+ ++ + + + G+ YL S IHRD+ A NIL+ E K+ADFG A
Sbjct: 94 -SGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARL 152
Query: 343 ----------SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER-K 391
K P W APE G++ K DVWS GI E+ +
Sbjct: 153 IEDDEYTAREGAKFPIK-------WTAPEAANY---GRFTIKSDVWSFGILLTEIVTYGR 202
Query: 392 PPYFNMN 398
PY M
Sbjct: 203 VPYPGMT 209
Score = 63.9 bits (156), Expect = 5e-11
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 26/150 (17%)
Query: 7 LLRQLKHPNTIE-YRGCYLRDHTAWLVMEY-CLGSASDII-EVHKRPLKEEEIAAICSGV 63
++++L+H ++ Y C + ++V EY GS D + + L+ ++ + + +
Sbjct: 54 IMKKLRHDKLVQLYAVCSEEE-PIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQI 112
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA------------SIKCPANSFV 111
G+ YL S IHRD+ A NIL+ E K+ADFG A K P
Sbjct: 113 AEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIK--- 169
Query: 112 GTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
W APE G++ K DVWS GI
Sbjct: 170 ----WTAPEAANY---GRFTIKSDVWSFGI 192
Score = 33.1 bits (76), Expect = 0.50
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 634 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVK 679
+ L+ ++ + + + G+ YL S IHRD+ A NIL+ E K
Sbjct: 98 KKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCK 143
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 80.3 bits (198), Expect = 1e-15
Identities = 60/203 (29%), Positives = 89/203 (43%), Gaps = 51/203 (25%)
Query: 290 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN 349
R +E E + VL ++++HS IHRD+K+ NILL G VKL DFG + +
Sbjct: 138 RTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATV 197
Query: 350 S------FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMSAL 403
S F GTPY++APE+ Y K D++SLG+ EL K P F+ M +
Sbjct: 198 SDDVGRTFCGTPYYVAPEI---WRRKPYSKKADMFSLGVLLYELLTLKRP-FDGENMEEV 253
Query: 404 YHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSDT 463
H KT++ + PP + +P +Q
Sbjct: 254 MH-----------------KTLAGRYDPLPP---------------SISPEMQE------ 275
Query: 464 FAHFVSSCLAKNPADRPSSGRLL 486
V++ L+ +P RPSS +LL
Sbjct: 276 ---IVTALLSSDPKRRPSSSKLL 295
Score = 73.4 bits (180), Expect = 2e-13
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 49 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN 108
R +E E + VL ++++HS IHRD+K+ NILL G VKL DFG + +
Sbjct: 138 RTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATV 197
Query: 109 S------FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITPG---SLKDPEIAELFDKED 159
S F GTPY++APE+ Y K D++SLG+ +LK P FD E+
Sbjct: 198 SDDVGRTFCGTPYYVAPEI---WRRKPYSKKADMFSLGVLLYELLTLKRP-----FDGEN 249
Query: 160 PEKI 163
E++
Sbjct: 250 MEEV 253
Score = 45.6 bits (108), Expect = 8e-05
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 634 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
R +E E + VL ++++HS IHRD+K+ NILL G VKL
Sbjct: 138 RTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKL 184
>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein
Serine/Threonine Kinases, Novel Protein Kinase C theta
and delta. Serine/Threonine Kinases (STKs), Novel
Protein Kinase C (nPKC), theta and delta-like isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The nPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
nPKCs are calcium-independent, but require DAG
(1,2-diacylglycerol) and phosphatidylserine (PS) for
activity. There are four nPKC isoforms, delta, epsilon,
eta, and theta. PKC-theta is selectively expressed in
T-cells and plays an important and non-redundant role in
several aspects of T-cell biology. PKC-delta plays a
role in cell cycle regulation and programmed cell death
in many cell types.
Length = 316
Score = 78.3 bits (193), Expect = 1e-15
Identities = 75/251 (29%), Positives = 106/251 (42%), Gaps = 48/251 (19%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADI---LKEIRFLR-QLKHPNTI 225
+G GSFG V A + E AIK L K + D+ + E R L +HP
Sbjct: 3 LGKGSFGKVMLAELKGTNEFFAIKA---LKKDVVLEDDDVECTMVERRVLALAWEHPFLT 59
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
+ + VMEY G D++ FH+ Q F E A F
Sbjct: 60 HLFCTFQTKEHLFFVMEYLNGG--DLM--------FHI-------QSSGRFDEARARF-- 100
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK 345
EI IC GL +LH G I+RD+K N+LL + G +K+ADFG
Sbjct: 101 -------YAAEI--IC-----GLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKEN 146
Query: 346 C----PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMS 401
A++F GTP ++APE++ +Y+ VD WS G+ E+ + P F+
Sbjct: 147 MNGEGKASTFCGTPDYIAPEILKGQ---KYNESVDWWSFGVLLYEMLIGQSP-FHGEDED 202
Query: 402 ALYHIAQNDTP 412
L+ ND P
Sbjct: 203 ELFDSILNDRP 213
Score = 74.8 bits (184), Expect = 2e-14
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 30 WLVMEYCLGS--ASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 87
+ VMEY G I + A + ++ GL +LH G I+RD+K N+LL
Sbjct: 72 FFVMEYLNGGDLMFHIQSSGRFDEARARFYA--AEIICGLQFLHKKGIIYRDLKLDNVLL 129
Query: 88 TETGTVKLADFGSASIKC----PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITP 143
+ G +K+ADFG A++F GTP ++APE++ +Y+ VD WS G+
Sbjct: 130 DKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQ---KYNESVDWWSFGVL- 185
Query: 144 GSLKDPEIAEL-FDKEDPEKIFEDLR 168
L + I + F ED +++F+ +
Sbjct: 186 --LYEMLIGQSPFHGEDEDELFDSIL 209
Score = 36.7 bits (85), Expect = 0.035
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 617 VMEYCLGS--ASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
VMEY G I + A + ++ GL +LH G I+RD+K N+LL +
Sbjct: 74 VMEYLNGGDLMFHIQSSGRFDEARARFYA--AEIICGLQFLHKKGIIYRDLKLDNVLLDK 131
Query: 675 TGTVKL 680
G +K+
Sbjct: 132 DGHIKI 137
>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy
protein kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Myotonic Dystrophy
protein kinase (DMPK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The DMPK-like subfamily is composed of DMPK
and DMPK-related cell division control protein 42
(Cdc42) binding kinase (MRCK). Three isoforms of MRCK
are known, named alpha, beta and gamma. The DMPK gene is
implicated in myotonic dystrophy 1 (DM1), an inherited
multisystemic disorder with symptoms that include muscle
hyperexcitability, progressive muscle weakness and
wasting, cataract development, testicular atrophy, and
cardiac conduction defects. The genetic basis for DM1 is
the mutational expansion of a CTG repeat in the 3'-UTR
of DMPK. DMPK is expressed in skeletal and cardiac
muscles, and in central nervous tissues. The functional
role of DMPK is not fully understood. It may play a role
in the signal transduction and homeostasis of calcium.
MRCK is activated via interaction with the small GTPase
Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent
cell motility. MRCKgamma is expressed in heart and
skeletal muscles, unlike MRCKalpha and MRCKbeta, which
are expressed ubiquitously.
Length = 331
Score = 78.3 bits (193), Expect = 1e-15
Identities = 70/250 (28%), Positives = 116/250 (46%), Gaps = 61/250 (24%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILK--EIRFLRQ--- 218
FE L+ IG G+FG V + + ++ A+K ++ KW ++LK E R+
Sbjct: 3 FEILKVIGRGAFGEVAVVKMKNTGQVYAMKILN--------KW-EMLKRAETACFREERD 53
Query: 219 -LKHPN-----TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQ 272
L + + + Y + ++ +LVM+Y +G G+ L
Sbjct: 54 VLVNGDRRWITNLHY--AFQDENNLYLVMDYYVG--------------------GDLLTL 91
Query: 273 LKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 332
L F + E R E + AI S +H LG +HRD+K N+LL + G
Sbjct: 92 LSKFEDRLP----EDMARFYLAEMVLAIDS--------VHQLGYVHRDIKPDNVLLDKNG 139
Query: 333 TVKLADFGS-----ASIKCPANSFVGTPYWMAPEVILAMDE--GQYDGKVDVWSLGITCI 385
++LADFGS A +N VGTP +++PE++ AM++ G+Y + D WSLG+
Sbjct: 140 HIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMY 199
Query: 386 ELAERKPPYF 395
E+ + P++
Sbjct: 200 EMLYGETPFY 209
Score = 72.1 bits (177), Expect = 2e-13
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 12/122 (9%)
Query: 30 WLVMEYCLGSASDIIEVHKR---PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 86
+LVM+Y +G D++ + + L E+ + ++ ++ +H LG +HRD+K N+L
Sbjct: 77 YLVMDYYVGG--DLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVL 134
Query: 87 LTETGTVKLADFGS-----ASIKCPANSFVGTPYWMAPEVILAMDE--GQYDGKVDVWSL 139
L + G ++LADFGS A +N VGTP +++PE++ AM++ G+Y + D WSL
Sbjct: 135 LDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSL 194
Query: 140 GI 141
G+
Sbjct: 195 GV 196
Score = 35.1 bits (81), Expect = 0.13
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 616 LVMEYCLGSASDIIEVHKR---PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
LVM+Y +G D++ + + L E+ + ++ ++ +H LG +HRD+K N+LL
Sbjct: 78 LVMDYYVGG--DLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLL 135
Query: 673 TETGTVKL 680
+ G ++L
Sbjct: 136 DKNGHIRL 143
>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-3 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-3 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-3 shows a
restricted pattern of expression and is present in
brain, kidney, and intestine. It is elevated in
Alzheimer's disease (AD) and has been shown to associate
with paired helical filaments (PHFs) and stimulate Tau
phosphorylation. As AD progresses, phosphorylated Tau
aggregates and forms PHFs, which leads to the formation
of neurofibrillary tangles (NFTs). In human glioma
cells, PCTAIRE-3 induces cell cycle arrest and cell
death.
Length = 288
Score = 77.8 bits (191), Expect = 1e-15
Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 41/232 (17%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIE 226
L ++G G++ V+ R ++ +VA+K++ ++ A A ++E+ L+ LKH N +
Sbjct: 10 LDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTA--IREVSLLKNLKHANIVT 67
Query: 227 YRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFE 286
+ LV EY SD+ + +++ GN + + +F F+
Sbjct: 68 LHDIIHTERCLTLVFEYL---DSDLKQ--------YLDNCGNLMS-----MHNVKIFMFQ 111
Query: 287 VHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK- 345
+ LRGL+Y H +HRD+K N+L+ E G +KLADFG A K
Sbjct: 112 L-----------------LRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKS 154
Query: 346 CPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
P ++ V T ++ P+V+L E Y +D+W +G E+A +P +
Sbjct: 155 VPTKTYSNEVVTLWYRPPDVLLGSTE--YSTPIDMWGVGCILYEMATGRPMF 204
Score = 67.7 bits (165), Expect = 3e-12
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 65
SLL+ LKH N + + LV EY ++ + + +LR
Sbjct: 55 SLLKNLKHANIVTLHDIIHTERCLTLVFEYLDSDLKQYLDNCGNLMSMHNVKIFMFQLLR 114
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK-CPANSF---VGTPYWMAPEV 121
GL+Y H +HRD+K N+L+ E G +KLADFG A K P ++ V T ++ P+V
Sbjct: 115 GLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDV 174
Query: 122 ILAMDEGQYDGKVDVWSLG 140
+L E Y +D+W +G
Sbjct: 175 LLGSTE--YSTPIDMWGVG 191
Score = 37.3 bits (86), Expect = 0.024
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+LRGL+Y H +HRD+K N+L+ E G +KL
Sbjct: 112 LLRGLSYCHKRKILHRDLKPQNLLINEKGELKL 144
>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine
Kinases, Mitogen-Activated Protein Kinases 4 and 6.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK4/6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. MAPK4 is also called ERK4 or
p63MAPK, while MAPK6 is also called ERK3 or p97MAPK.
MAPK4 and MAPK6 are atypical MAPKs that are not
regulated by MAP2Ks. MAPK6 is expressed ubiquitously
with highest amounts in brain and skeletal muscle. It
may be involved in the control of cell differentiation
by negatively regulating cell cycle progression in
certain conditions. It may also play a role in
glucose-induced insulin secretion. MAPK6 and MAPK4
cooperate to regulate the activity of MAPK-activated
protein kinase 5 (MK5), leading to its relocation to the
cytoplasm and exclusion from the nucleus. The MAPK6/MK5
and MAPK4/MK5 pathways may play critical roles in
embryonic and post-natal development.
Length = 342
Score = 78.3 bits (193), Expect = 2e-15
Identities = 72/280 (25%), Positives = 120/280 (42%), Gaps = 51/280 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+ DLR +G GS G V+ A + VA+KK+ Q L+EI+ +R+L H N
Sbjct: 7 YMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQ---SVKHALREIKIIRRLDHDN 63
Query: 224 TI---EYRGCYLRDHTAWLVMEYCLGSASDIIEVH--WIEREFHVEGMGNRLQQLKCFTE 278
+ E G D T + E++ +I +E+ + N L+Q E
Sbjct: 64 IVKVYEVLGPSGSDLTE---------DVGSLTELNSVYIVQEYMETDLANVLEQGPLSEE 114
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL-TETGTVKLA 337
H LF ++ +LRGL Y+HS +HRD+K N+ + TE +K+
Sbjct: 115 HARLFMYQ-----------------LLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIG 157
Query: 338 DFGSASIKCPANSFVG-------TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 390
DFG A I P S G T ++ +P ++L+ + Y +D+W+ G E+
Sbjct: 158 DFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNN--YTKAIDMWAAGCIFAEMLTG 215
Query: 391 KPPYFNMNAMSALYHIA-------QNDTPCLQSSDWSVIK 423
KP + + + + I + D L + S ++
Sbjct: 216 KPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVR 255
Score = 61.7 bits (150), Expect = 4e-10
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 12/121 (9%)
Query: 28 TAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 87
+ ++V EY ++++E + PL EE +LRGL Y+HS +HRD+K N+ +
Sbjct: 90 SVYIVQEYMETDLANVLE--QGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFI 147
Query: 88 -TETGTVKLADFGSASIKCPANSFVG-------TPYWMAPEVILAMDEGQYDGKVDVWSL 139
TE +K+ DFG A I P S G T ++ +P ++L+ + Y +D+W+
Sbjct: 148 NTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNN--YTKAIDMWAA 205
Query: 140 G 140
G
Sbjct: 206 G 206
Score = 45.5 bits (108), Expect = 7e-05
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 597 SQHSYNNNNSNYSSLFSPQLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLH 656
S + + + L S +V EY ++++E + PL EE +LRGL Y+H
Sbjct: 74 SGSDLTEDVGSLTELNSVYIVQEYMETDLANVLE--QGPLSEEHARLFMYQLLRGLKYIH 131
Query: 657 SLGRIHRDVKAGNILL-TETGTVKL 680
S +HRD+K N+ + TE +K+
Sbjct: 132 SANVLHRDLKPANVFINTEDLVLKI 156
>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C theta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), theta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta
is selectively expressed in T-cells and plays an
important and non-redundant role in several aspects of
T-cell biology. Although T-cells also express other PKC
isoforms, PKC-theta is unique in that upon antigen
stimulation, it is translocated to the plasma membrane
at the immunological synapse, where it mediates signals
essential for T-cell activation. It is essential for
TCR-induced proliferation, cytokine production, T-cell
survival, and the differentiation and effector function
of T-helper (Th) cells, particularly Th2 and Th17.
PKC-theta is being developed as a therapeutic target for
Th2-mediated allergic inflammation and Th17-mediated
autoimmune diseases.
Length = 316
Score = 77.7 bits (191), Expect = 2e-15
Identities = 70/252 (27%), Positives = 108/252 (42%), Gaps = 48/252 (19%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADI---LKEIRFLR-QLKHPNTI 225
+G GSFG V+ A + + AIK L K D+ + E R L +HP
Sbjct: 3 LGKGSFGKVFLAELKGTNQFFAIKA---LKKDVVLMDDDVECTMVEKRVLSLAWEHPFLT 59
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
+ + VMEY G D++ FH++ + F
Sbjct: 60 HLYCTFQTKENLFFVMEYLNGG--DLM--------FHIQ----------------SCHKF 93
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----S 341
++ + EI IC GL +LHS G ++RD+K NILL G +K+ADFG +
Sbjct: 94 DLPRATFYAAEI--IC-----GLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKEN 146
Query: 342 ASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMS 401
+F GTP ++APE++L +Y+ VD WS G+ E+ + P+ +
Sbjct: 147 MLGDAKTCTFCGTPDYIAPEILLGQ---KYNTSVDWWSFGVLLYEMLIGQSPFHGHDE-E 202
Query: 402 ALYHIAQNDTPC 413
L+ + D PC
Sbjct: 203 ELFQSIRMDNPC 214
Score = 72.7 bits (178), Expect = 9e-14
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 30 WLVMEYCLGS--ASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 87
+ VMEY G I HK L A + ++ GL +LHS G ++RD+K NILL
Sbjct: 72 FFVMEYLNGGDLMFHIQSCHKFDLPRATFYA--AEIICGLQFLHSKGIVYRDLKLDNILL 129
Query: 88 TETGTVKLADFG----SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITP 143
G +K+ADFG + +F GTP ++APE++L +Y+ VD WS G+
Sbjct: 130 DTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQ---KYNTSVDWWSFGVL- 185
Query: 144 GSLKDPEIAEL-FDKEDPEKIFEDLR 168
L + I + F D E++F+ +R
Sbjct: 186 --LYEMLIGQSPFHGHDEEELFQSIR 209
Score = 38.0 bits (88), Expect = 0.016
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 616 LVMEYCLGS--ASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
VMEY G I HK L A + ++ GL +LHS G ++RD+K NILL
Sbjct: 73 FVMEYLNGGDLMFHIQSCHKFDLPRATFYA--AEIICGLQFLHSKGIVYRDLKLDNILLD 130
Query: 674 ETGTVKL 680
G +K+
Sbjct: 131 TDGHIKI 137
>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-1 is
expressed ubiquitously and is localized in the
cytoplasm. Its kinase activity is cell cycle dependent
and peaks at the S and G2 phases. PCTAIRE-1 is highly
expressed in the brain and may play a role in regulating
neurite outgrowth. It can also associate with Trap
(Tudor repeat associator with PCTAIRE-2), a
physiological partner of PCTAIRE-2; with p11, a small
dimeric protein with similarity to S100; and with 14-3-3
proteins, mediators of phosphorylation-dependent
interactions in many different proteins.
Length = 301
Score = 77.7 bits (191), Expect = 2e-15
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 55/237 (23%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIE 226
L ++G G++ VY R ++ +VA+K++ ++ A A ++E+ L+ LKH N +
Sbjct: 11 LDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTA--IREVSLLKDLKHANIVT 68
Query: 227 YRGCYLRDHTAWLVMEYC-------LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
+ + LV EY L + I +H ++
Sbjct: 69 LHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNSINMHNVK--------------------- 107
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
LF F++ LRGLNY H +HRD+K N+L+ E G +KLADF
Sbjct: 108 --LFLFQL-----------------LRGLNYCHRRKVLHRDLKPQNLLINERGELKLADF 148
Query: 340 GSASIKC-PANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP 392
G A K P ++ V T ++ P+++L + Y ++D+W +G E++ +P
Sbjct: 149 GLARAKSIPTKTYSNEVVTLWYRPPDILLGSTD--YSTQIDMWGVGCIFYEMSTGRP 203
Score = 69.6 bits (170), Expect = 9e-13
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-------LGSASDIIEVHKRPLKEEEIAA 58
SLL+ LKH N + + + LV EY L + I +H L
Sbjct: 56 SLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNSINMHNVKL------- 108
Query: 59 ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKC-PANSF---VGTP 114
+LRGLNY H +HRD+K N+L+ E G +KLADFG A K P ++ V T
Sbjct: 109 FLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTL 168
Query: 115 YWMAPEVILAMDEGQYDGKVDVWSLG 140
++ P+++L + Y ++D+W +G
Sbjct: 169 WYRPPDILLGSTD--YSTQIDMWGVG 192
Score = 38.4 bits (89), Expect = 0.011
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+LRGLNY H +HRD+K N+L+ E G +KL
Sbjct: 113 LLRGLNYCHRRKVLHRDLKPQNLLINERGELKL 145
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAST kinases contain an
N-terminal domain of unknown function, a central
catalytic domain, and a C-terminal PDZ domain that
mediates protein-protein interactions. There are four
mammalian MAST kinases, named MAST1-MAST4. MAST1 is also
referred to as syntrophin-associated STK (SAST), while
MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 77.1 bits (190), Expect = 3e-15
Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 55/251 (21%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
FE ++ I +G++GAVY R +R+ A+KK++ + + E L ++P
Sbjct: 3 FETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPF 62
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ + +VMEY VEG G+ LK
Sbjct: 63 VVSMFCSFETKRHLCMVMEY-------------------VEG-GDCATLLK--------- 93
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG--- 340
+ L + + + L YLH+ G +HRD+K N+L+T G +KL DFG
Sbjct: 94 ----NIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSK 149
Query: 341 -----------SASIKCPANSFV-----GTPYWMAPEVILAMDEGQYDGKVDVWSLGITC 384
I+ F+ GTP ++APEVIL G+ VD W++GI
Sbjct: 150 IGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGK---PVDWWAMGIIL 206
Query: 385 IELAERKPPYF 395
E P+F
Sbjct: 207 YEFLVGCVPFF 217
Score = 69.0 bits (169), Expect = 1e-12
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 22/130 (16%)
Query: 31 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 90
+VMEY G + + L + + + L YLH+ G +HRD+K N+L+T
Sbjct: 78 MVMEYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSM 137
Query: 91 GTVKLADFG--------------SASIKCPANSFV-----GTPYWMAPEVILAMDEGQYD 131
G +KL DFG I+ F+ GTP ++APEVIL G+
Sbjct: 138 GHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGK-- 195
Query: 132 GKVDVWSLGI 141
VD W++GI
Sbjct: 196 -PVDWWAMGI 204
Score = 43.6 bits (103), Expect = 2e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
+VMEY G + + L + + + L YLH+ G +HRD+K N+L+T
Sbjct: 78 MVMEYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSM 137
Query: 676 GTVKL 680
G +KL
Sbjct: 138 GHIKL 142
>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is
expressed primarily in the brain, and to a lesser extent
in the heart and testis. Mice deficient in Jnk3 are
protected against kainic acid-induced seizures, stroke,
sciatic axotomy neural death, and neuronal death due to
NGF deprivation, oxidative stress, or exposure to
beta-amyloid peptide. This suggests that JNK3 may play
roles in the pathogenesis of these diseases.
Length = 355
Score = 77.8 bits (191), Expect = 3e-15
Identities = 94/354 (26%), Positives = 144/354 (40%), Gaps = 66/354 (18%)
Query: 162 KIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSY-LGKQCAEKWADILKEIRFLRQLK 220
K +++L+ IG G+ G V A V VAIKK+S Q K A +E+ ++ +
Sbjct: 17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRA--YRELVLMKCVN 74
Query: 221 HPNTIEYRGCYLRDHT------AWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLK 274
H N I + + +LVME + +I++ E E M L Q+
Sbjct: 75 HKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQM-----ELDHERMSYLLYQML 129
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
C G+ +LHS G IHRD+K NI++ T+
Sbjct: 130 C-------------------------------GIKHLHSAGIIHRDLKPSNIVVKSDCTL 158
Query: 335 KLADFGSASIKCPANSFVGTP-----YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
K+ DFG A + SF+ TP Y+ APEVIL M Y VD+WS+G E+
Sbjct: 159 KILDFGLA--RTAGTSFMMTPYVVTRYYRAPEVILGMG---YKENVDIWSVGCIMGEMVR 213
Query: 390 RKPPYFNMNAMSALYH-IAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALY--- 445
K + + + I Q TPC + + T+ + E +P Y + L+
Sbjct: 214 HKILFPGRDYIDQWNKVIEQLGTPCPEFMK-KLQPTVRNYVENRPKYAGL-TFPKLFPDS 271
Query: 446 -HIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPS 498
A ++ L++S D +S L +PA R S L H + P+
Sbjct: 272 LFPADSEHNKLKASQARD----LLSKMLVIDPAKRISVDEALQHPYINVWYDPA 321
Score = 72.8 bits (178), Expect = 1e-13
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 19/151 (12%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHT------AWLVMEYCLGSASDIIEVHKRPLKEEEIAAIC 60
L++ + H N I + + +LVME + +I++ L E ++ +
Sbjct: 69 LMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQME---LDHERMSYLL 125
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTP-----Y 115
+L G+ +LHS G IHRD+K NI++ T+K+ DFG A + SF+ TP Y
Sbjct: 126 YQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA--RTAGTSFMMTPYVVTRY 183
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLGITPGSL 146
+ APEVIL M Y VD+WS+G G +
Sbjct: 184 YRAPEVILGMG---YKENVDIWSVGCIMGEM 211
Score = 40.1 bits (93), Expect = 0.004
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 16/90 (17%)
Query: 604 NNSNYSSL---FSPQ----------LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 650
N+ N SL F+PQ LVME + +I++ L E ++ + +L
Sbjct: 74 NHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQME---LDHERMSYLLYQMLC 130
Query: 651 GLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
G+ +LHS G IHRD+K NI++ T+K+
Sbjct: 131 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKI 160
>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C epsilon.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), epsilon isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta.
PKC-epsilon has been shown to behave as an oncoprotein.
Its overexpression contributes to neoplastic
transformation depending on the cell type. It
contributes to oncogenesis by inducing disordered cell
growth and inhibiting cell death. It also plays a role
in tumor invasion and metastasis. PKC-epsilon has also
been found to confer cardioprotection against ischemia
and reperfusion-mediated damage. Other cellular
functions include the regulation of gene expression,
cell adhesion, and cell motility.
Length = 321
Score = 76.8 bits (189), Expect = 4e-15
Identities = 68/238 (28%), Positives = 96/238 (40%), Gaps = 57/238 (23%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADI---LKEIRFLR-QLKHPNTI 225
+G GSFG V A + E+ AIK L K + D+ + E R L KHP
Sbjct: 3 LGKGSFGKVMLAELKGTDEVYAIK---VLKKDVILQDDDVDCTMTEKRILALAAKHPFLT 59
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
C+ + VMEY G D++ F
Sbjct: 60 ALHCCFQTKDRLFFVMEYVNGG--DLM--------------------------------F 85
Query: 286 EVHK-RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI 344
++ + R E + V L +LH G I+RD+K NILL G KLADFG
Sbjct: 86 QIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFG---- 141
Query: 345 KCPAN--------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
C +F GTP ++APE+ + E +Y VD W+LG+ E+ +PP+
Sbjct: 142 MCKEGILNGVTTTTFCGTPDYIAPEI---LQELEYGPSVDWWALGVLMYEMMAGQPPF 196
Score = 71.0 bits (174), Expect = 3e-13
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 12 KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDII-EVHK-RPLKEEEIAAICSGVLRGLNY 69
KHP C+ + VMEY G D++ ++ + R E + V L +
Sbjct: 54 KHPFLTALHCCFQTKDRLFFVMEYVNGG--DLMFQIQRSRKFDEPRSRFYAAEVTLALMF 111
Query: 70 LHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN--------SFVGTPYWMAPEV 121
LH G I+RD+K NILL G KLADFG C +F GTP ++APE+
Sbjct: 112 LHRHGVIYRDLKLDNILLDAEGHCKLADFG----MCKEGILNGVTTTTFCGTPDYIAPEI 167
Query: 122 ILAMDEGQYDGKVDVWSLGI 141
+ E +Y VD W+LG+
Sbjct: 168 ---LQELEYGPSVDWWALGV 184
Score = 35.6 bits (82), Expect = 0.085
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 617 VMEYCLGSASDII-EVHK-RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
VMEY G D++ ++ + R E + V L +LH G I+RD+K NILL
Sbjct: 74 VMEYVNGG--DLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDA 131
Query: 675 TGTVKL 680
G KL
Sbjct: 132 EGHCKL 137
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 77.0 bits (189), Expect = 4e-15
Identities = 63/243 (25%), Positives = 102/243 (41%), Gaps = 60/243 (24%)
Query: 170 IGHGSFGAV----------YYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQL 219
+G G+FG V YYA ++ +E++ K ++ A + E R L+
Sbjct: 3 LGKGTFGKVILVREKATGRYYAMKILRKEVIIAK----------DEVAHTVTESRVLQNT 52
Query: 220 KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
+HP + + VMEY G E FH L + + FTE
Sbjct: 53 RHPFLTALKYAFQTHDRLCFVMEYANGG----------ELFFH-------LSRERVFTEE 95
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
A F + ++ L YLHS ++RD+K N++L + G +K+ DF
Sbjct: 96 RARF----------------YGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDF 139
Query: 340 G----SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYF 395
G S +F GTP ++APEV +++ Y VD W LG+ E+ + P++
Sbjct: 140 GLCKEGISDGATMKTFCGTPEYLAPEV---LEDNDYGRAVDWWGLGVVMYEMMCGRLPFY 196
Query: 396 NMN 398
N +
Sbjct: 197 NQD 199
Score = 68.5 bits (167), Expect = 2e-12
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVL 64
S +L+ +HP + + VMEY G +R EE + ++
Sbjct: 46 SRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIV 105
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASIKCPANSFVGTPYWMAPE 120
L YLHS ++RD+K N++L + G +K+ DFG S +F GTP ++APE
Sbjct: 106 SALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPE 165
Query: 121 VILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDPEKIFE 165
V +++ Y VD W LG+ + + F +D E++FE
Sbjct: 166 V---LEDNDYGRAVDWWGLGVVMYEMMCGRLP--FYNQDHERLFE 205
Score = 35.4 bits (81), Expect = 0.11
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
VMEY G +R EE + ++ L YLHS ++RD+K N++L +
Sbjct: 72 FVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKD 131
Query: 676 GTVKL 680
G +K+
Sbjct: 132 GHIKI 136
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 76.0 bits (187), Expect = 5e-15
Identities = 67/256 (26%), Positives = 112/256 (43%), Gaps = 47/256 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+E L +IG G++G VY AR + ++VA+KK + L L+EI L+ L
Sbjct: 3 YEKLEKIGEGTYGKVYKARDKNTGKLVALKK-TRLEMDEEGIPPTALREISLLQMLSESI 61
Query: 224 TIEYRGCYLRDHTA--------WLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKC 275
I +H +LV EY + + L++
Sbjct: 62 YIVRLLDV--EHVEEKNGKPSLYLVFEY----------------------LDSDLKK--- 94
Query: 276 FTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL-TETGTV 334
F N RPL + I + +L+G+ + H G +HRD+K N+L+ + G +
Sbjct: 95 ----FMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLL 150
Query: 335 KLADFG-SASIKCPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 390
K+AD G + P S+ + T ++ APEV+L Y VD+WS+G E++ +
Sbjct: 151 KIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLG--STHYSTPVDIWSVGCIFAEMSRK 208
Query: 391 KPPYFNMNAMSALYHI 406
+P + + + L HI
Sbjct: 209 QPLFPGDSELQQLLHI 224
Score = 64.8 bits (158), Expect = 3e-11
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 30 WLVMEYCLGSASDIIEVHKR----PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNI 85
+LV EY ++ + R PL + I + +L+G+ + H G +HRD+K N+
Sbjct: 82 YLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNL 141
Query: 86 LL-TETGTVKLADFG-SASIKCPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
L+ + G +K+AD G + P S+ + T ++ APEV+L Y VD+WS+G
Sbjct: 142 LVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLG--STHYSTPVDIWSVG 199
Score = 39.8 bits (93), Expect = 0.004
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 604 NNSNYSSLFSPQLVMEYCLGSASDIIEVHKR----PLKEEEIAAICSGVLRGLNYLHSLG 659
+ SL+ LV EY ++ + R PL + I + +L+G+ + H G
Sbjct: 74 EKNGKPSLY---LVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHG 130
Query: 660 RIHRDVKAGNILLTETGTV 678
+HRD+K N+L+ + +
Sbjct: 131 VMHRDLKPQNLLVDKQKGL 149
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Fes subfamily; catalytic (c) domain. Fes subfamily
members include Fes (or Fps), Fer, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes and Fer kinases play roles in haematopoiesis,
inflammation and immunity, growth factor signaling,
cytoskeletal regulation, cell migration and adhesion,
and the regulation of cell-cell interactions. Fes and
Fer show redundancy in their biological functions.
Length = 251
Score = 75.2 bits (185), Expect = 6e-15
Identities = 63/238 (26%), Positives = 96/238 (40%), Gaps = 45/238 (18%)
Query: 168 REIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEY 227
+IG G+FG VY L VA+K + + L+E L+Q HPN ++
Sbjct: 1 EKIGKGNFGDVYKGV-LKGNTEVAVK--TCRSTLPPDLKRKFLQEAEILKQYDHPNIVKL 57
Query: 228 RGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEV 287
G ++ ++VME G G+ L L+
Sbjct: 58 IGVCVQKQPIYIVMELVPG--------------------GSLLTFLR------------K 85
Query: 288 HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-----SA 342
K L +++ + G+ YL S IHRD+ A N L+ E +K++DFG
Sbjct: 86 KKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEG 145
Query: 343 SIKCPANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPPYFNMN 398
I ++ P W APE A++ G+Y + DVWS GI E + PY M+
Sbjct: 146 GIYTVSDGLKQIPIKWTAPE---ALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS 200
Score = 70.2 bits (172), Expect = 3e-13
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 4 GSSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSG 62
+ +L+Q HPN ++ G ++ ++VME G S + K L +++ +
Sbjct: 42 EAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLD 101
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-----SASIKCPANSFVGTPY-W 116
G+ YL S IHRD+ A N L+ E +K++DFG I ++ P W
Sbjct: 102 AAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKW 161
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGI 141
APE A++ G+Y + DVWS GI
Sbjct: 162 TAPE---ALNYGRYTSESDVWSYGI 183
Score = 35.5 bits (82), Expect = 0.074
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 616 LVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
+VME G S + K L +++ + G+ YL S IHRD+ A N L+ E
Sbjct: 69 IVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGE 128
Query: 675 TGTVKL 680
+K+
Sbjct: 129 NNVLKI 134
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 74.9 bits (184), Expect = 7e-15
Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 49/257 (19%)
Query: 159 DPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ 218
DP+ + L+E+G G FG V Y + + VAIK + K+ + + ++E + + +
Sbjct: 2 DPKDL-TFLKELGTGQFGVVKYGK-WRGQYDVAIKMI----KEGSMSEDEFIEEAKVMMK 55
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
L H ++ G + ++V EY M N C
Sbjct: 56 LSHEKLVQLYGVCTKQRPIYIVTEY----------------------MSN-----GC--- 85
Query: 279 HFALFNF-EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
L N+ H + + ++ +C V G+ YL S IHRD+ A N L+ + G VK++
Sbjct: 86 ---LLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVS 142
Query: 338 DFGSAS--IKCPANSFVGTPY---WMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERK 391
DFG + + S VG+ + W PEV+L ++ K DVW+ G+ E+ + K
Sbjct: 143 DFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYS---KFSSKSDVWAFGVLMWEVYSLGK 199
Query: 392 PPYFNMNAMSALYHIAQ 408
PY N + ++Q
Sbjct: 200 MPYERFNNSETVEKVSQ 216
Score = 68.0 bits (166), Expect = 2e-12
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGV 63
+ ++ +L H ++ G + ++V EY G + + H + + ++ +C V
Sbjct: 50 AKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDV 109
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS--IKCPANSFVGTPY---WMA 118
G+ YL S IHRD+ A N L+ + G VK++DFG + + S VG+ + W
Sbjct: 110 CEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSP 169
Query: 119 PEVILAMDEGQYDGKVDVWSLGI 141
PEV+L ++ K DVW+ G+
Sbjct: 170 PEVLLYS---KFSSKSDVWAFGV 189
Score = 37.6 bits (87), Expect = 0.019
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 632 HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
H + + ++ +C V G+ YL S IHRD+ A N L+ + G VK+
Sbjct: 93 HGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKV 141
>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The GRK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. GRKs phosphorylate and
regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors, which
regulate some part of nearly all physiological
functions. Phosphorylated GPCRs bind to arrestins, which
prevents further G protein signaling despite the
presence of activating ligand. GRKs contain a central
catalytic domain, flanked by N- and C-terminal
extensions. The N-terminus contains an RGS (regulator of
G protein signaling) homology (RH) domain and several
motifs. The C-terminus diverges among different groups
of GRKs. There are seven types of GRKs, named GRK1 to
GRK7. They are subdivided into three main groups: visual
(GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and
GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is
widespread while GRK1/4/7 show a limited tissue
distribution. The substrate spectrum of the widely
expressed GRKs partially overlaps. GRKs play important
roles in the cardiovascular, immune, respiratory,
skeletal, and nervous systems.
Length = 277
Score = 75.2 bits (185), Expect = 8e-15
Identities = 63/236 (26%), Positives = 98/236 (41%), Gaps = 53/236 (22%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMS--YLGKQCAEKWADILKEI------RFLRQLKH 221
+G G FG V + + ++ A KK+ L K+ E+ A K+I RF+ L +
Sbjct: 1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAY 60
Query: 222 PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
+ C LVM L + D+ ++H+ +G F E A
Sbjct: 61 AFETKDDLC--------LVMT--LMNGGDL--------KYHIYNVGEPG-----FPEARA 97
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
+F A I G L +LH ++RD+K N+LL + G V+++D G
Sbjct: 98 IF------------YAAQIICG----LEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGL 141
Query: 342 A---SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
A GTP +MAPEV+ YD VD ++LG T E+ + P+
Sbjct: 142 AVELKGGKKIKGRAGTPGYMAPEVLQ---GEVYDFSVDWFALGCTLYEMIAGRSPF 194
Score = 69.5 bits (170), Expect = 7e-13
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 57 AAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SIKCPANSFVGT 113
A I G L +LH ++RD+K N+LL + G V+++D G A GT
Sbjct: 102 AQIICG----LEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGT 157
Query: 114 PYWMAPEVILAMDEGQYDGKVDVWSLGIT 142
P +MAPEV+ YD VD ++LG T
Sbjct: 158 PGYMAPEVLQ---GEVYDFSVDWFALGCT 183
Score = 35.2 bits (81), Expect = 0.11
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 642 AAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
A I G L +LH ++RD+K N+LL + G V++
Sbjct: 102 AQIICG----LEHLHQRRIVYRDLKPENVLLDDHGNVRI 136
>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine
Kinases, Tropomyosin Related Kinases. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase (Trk)
subfamily; catalytic (c) domain. The Trk subfamily
consists of TrkA, TrkB, TrkC, and similar proteins. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Trk
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular region with arrays of
leucine-rich motifs flanked by two cysteine-rich
clusters followed by two immunoglobulin-like domains, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, the nerve growth
factor (NGF) family of neutrotrophins, leads to Trk
receptor oligomerization and activation of the catalytic
domain. Trk receptors are mainly expressed in the
peripheral and central nervous systems. They play
important roles in cell fate determination, neuronal
survival and differentiation, as well as in the
regulation of synaptic plasticity. Altered expression of
Trk receptors is associated with many human diseases.
Length = 280
Score = 75.2 bits (185), Expect = 8e-15
Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 38/255 (14%)
Query: 167 LREIGHGSFGAVYYARCLV-----SREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKH 221
RE+G G+FG V+ C +E+VA+K + A K D +E L +H
Sbjct: 10 KRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARK--DFEREAELLTNFQH 67
Query: 222 PNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHF 280
N +++ G +V EY G + + H + F ++ + + +L
Sbjct: 68 ENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAF-LKSPDSPMGELT------ 120
Query: 281 ALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
++ I + G+ YL S +HRD+ N L+ VK+ DFG
Sbjct: 121 -------------LSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFG 167
Query: 341 -SASIKCPANSFVG----TPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPP 393
S + VG P WM PE I+ ++ + DVWS G+ E+ K P
Sbjct: 168 MSRDVYTTDYYRVGGHTMLPIRWMPPESIMY---RKFTTESDVWSFGVVLWEIFTYGKQP 224
Query: 394 YFNMNAMSALYHIAQ 408
++ ++ + I Q
Sbjct: 225 WYGLSNEEVIECITQ 239
Score = 52.1 bits (125), Expect = 4e-07
Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 23/156 (14%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKR-------------PLK 52
LL +H N +++ G +V EY G + + H L
Sbjct: 61 LLTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELT 120
Query: 53 EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPANSFV 111
++ I + G+ YL S +HRD+ N L+ VK+ DFG S + V
Sbjct: 121 LSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRV 180
Query: 112 G----TPY-WMAPEVILAMDEGQYDGKVDVWSLGIT 142
G P WM PE I+ ++ + DVWS G+
Sbjct: 181 GGHTMLPIRWMPPESIMY---RKFTTESDVWSFGVV 213
>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-1 is
widely expressed except in the spleen and thymus. It is
highly expressed in the brain, heart, pancreas, testis,
and ovary, and is localized in the cytoplasm. It is
regulated by cyclin D3 and is inhibited by the p21 cell
cycle inhibitor. It has also been shown to interact with
the membrane-associated cyclin Y, which recruits the
protein to the plasma membrane.
Length = 303
Score = 75.1 bits (184), Expect = 1e-14
Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 44/239 (18%)
Query: 155 FDKEDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIR 214
F K D +E L ++G GS+ VY + V+ ++VA+K + ++ A ++E
Sbjct: 1 FGKADS---YEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTA--IREAS 55
Query: 215 FLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLK 274
L+ LKH N + T LV EY +D+ + ++++ H G+
Sbjct: 56 LLKGLKHANIVLLHDIIHTKETLTLVFEYV---HTDLCQ--YMDK--HPGGL-------- 100
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
E+ LF F++ LRGL+Y+H +HRD+K N+L+++TG +
Sbjct: 101 -HPENVKLFLFQL-----------------LRGLSYIHQRYILHRDLKPQNLLISDTGEL 142
Query: 335 KLADFGSASIK-CPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
KLADFG A K P++++ V T ++ P+V+L E Y +D+W +G +E+ +
Sbjct: 143 KLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTE--YSTCLDMWGVGCIFVEMIQ 199
Score = 74.3 bits (182), Expect = 3e-14
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVL 64
+SLL+ LKH N + T LV EY ++ H L E + +L
Sbjct: 54 ASLLKGLKHANIVLLHDIIHTKETLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLL 113
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK-CPANSF---VGTPYWMAPE 120
RGL+Y+H +HRD+K N+L+++TG +KLADFG A K P++++ V T ++ P+
Sbjct: 114 RGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPD 173
Query: 121 VILAMDEGQYDGKVDVWSLG 140
V+L E Y +D+W +G
Sbjct: 174 VLLGSTE--YSTCLDMWGVG 191
Score = 43.1 bits (101), Expect = 3e-04
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
LV EY ++ H L E + +LRGL+Y+H +HRD+K N+L+++T
Sbjct: 80 LVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDT 139
Query: 676 GTVKL 680
G +KL
Sbjct: 140 GELKL 144
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 75.5 bits (185), Expect = 1e-14
Identities = 60/237 (25%), Positives = 101/237 (42%), Gaps = 48/237 (20%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYRG 229
+G G+FG V R S + A+K + ++ A L E R L+ +HP +
Sbjct: 3 LGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKY 62
Query: 230 CYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEVHK 289
+ VMEY G E FH+ +
Sbjct: 63 SFQTKDRLCFVMEYVNGG----------ELFFHLS-----------------------RE 89
Query: 290 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG--------S 341
R E+ + ++ L+YLHS ++RD+K N++L + G +K+ DFG +
Sbjct: 90 RVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDA 149
Query: 342 ASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMN 398
A++K +F GTP ++APEV +++ Y VD W LG+ E+ + P++N +
Sbjct: 150 ATMK----TFCGTPEYLAPEV---LEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD 199
Score = 70.1 bits (171), Expect = 7e-13
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVL 64
S +L+ +HP + + VMEY G +R E+ + ++
Sbjct: 46 SRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRERVFSEDRTRFYGAEIV 105
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG--------SASIKCPANSFVGTPYW 116
L+YLHS ++RD+K N++L + G +K+ DFG +A++K +F GTP +
Sbjct: 106 SALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMK----TFCGTPEY 161
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDPEKIFE 165
+APEV +++ Y VD W LG+ + + F +D EK+FE
Sbjct: 162 LAPEV---LEDNDYGRAVDWWGLGVVMYEMMCGRLP--FYNQDHEKLFE 205
Score = 34.3 bits (78), Expect = 0.25
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
VMEY G +R E+ + ++ L+YLHS ++RD+K N++L +
Sbjct: 72 FVMEYVNGGELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKD 131
Query: 676 GTVKL 680
G +K+
Sbjct: 132 GHIKI 136
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase. Serine/Threonine Kinases
(STKs), Rho-associated coiled-coil containing protein
kinase (ROCK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The ROCK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. ROCK is also referred to as Rho-associated
kinase or simply as Rho kinase. It contains an
N-terminal extension, a catalytic kinase domain, and a
long C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain. It is activated via interaction with Rho GTPases
and is involved in many cellular functions including
contraction, adhesion, migration, motility,
proliferation, and apoptosis. The ROCK subfamily
consists of two isoforms, ROCK1 and ROCK2, which may be
functionally redundant in some systems, but exhibit
different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is
more prominent in brain and skeletal muscle while ROCK1
is more pronounced in the liver, testes, and kidney.
Studies in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 76.0 bits (187), Expect = 1e-14
Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 42/239 (17%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
F+ ++ IG G+FG V R S+++ A+K +S A +E +
Sbjct: 45 FDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEW 104
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
++ + D ++VMEY G D++ + +
Sbjct: 105 IVQLHYAFQDDKYLYMVMEYMPGG--DLVNL---------------------------MS 135
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
N+++ E+ + V+ L+ +HS+G IHRDVK N+LL ++G +KLADFG+
Sbjct: 136 NYDI-----PEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTC- 189
Query: 344 IKCPANSF------VGTPYWMAPEVILAM-DEGQYDGKVDVWSLGITCIELAERKPPYF 395
+K AN VGTP +++PEV+ + +G Y + D WS+G+ E+ P++
Sbjct: 190 MKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFY 248
Score = 71.7 bits (176), Expect = 3e-13
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 11/120 (9%)
Query: 30 WLVMEYCLGSASDIIEVHKRPLKEEEIAAICSG-VLRGLNYLHSLGRIHRDVKAGNILLT 88
++VMEY G D++ + E+ A + V+ L+ +HS+G IHRDVK N+LL
Sbjct: 119 YMVMEYMPGG--DLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLD 176
Query: 89 ETGTVKLADFGSASIKCPANSF------VGTPYWMAPEVILAM-DEGQYDGKVDVWSLGI 141
++G +KLADFG+ +K AN VGTP +++PEV+ + +G Y + D WS+G+
Sbjct: 177 KSGHLKLADFGTC-MKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGV 235
Score = 40.5 bits (95), Expect = 0.002
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSG-VLRGLNYLHSLGRIHRDVKAGNILLTE 674
+VMEY G D++ + E+ A + V+ L+ +HS+G IHRDVK N+LL +
Sbjct: 120 MVMEYMPGG--DLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDK 177
Query: 675 TGTVKL 680
+G +KL
Sbjct: 178 SGHLKL 183
>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase
1-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Yeast protein kinase 1
(YPK1)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YPK1-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
fungal proteins with similarity to the AGC STKs,
Saccharomyces cerevisiae YPK1 and Schizosaccharomyces
pombe Gad8p. YPK1 is required for cell growth and acts
as a downstream kinase in the sphingolipid-mediated
signaling pathway of yeast. It also plays a role in
efficient endocytosis and in the maintenance of cell
wall integrity. Gad8p is a downstream target of Tor1p,
the fission yeast homolog of mTOR. It plays a role in
cell growth and sexual development.
Length = 312
Score = 75.0 bits (184), Expect = 1e-14
Identities = 64/237 (27%), Positives = 94/237 (39%), Gaps = 42/237 (17%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYRG 229
IG GSFG V R ++ I A+K + + L E L Q+ P + +
Sbjct: 1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKF 60
Query: 230 CYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEVHK 289
+ +LV+ + G FH LQ+ F A F
Sbjct: 61 SFQSPEKLYLVLAFINGG-----------ELFH------HLQREGRFDLSRARF------ 97
Query: 290 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCP-- 347
+ +L L LH I+RD+K NILL G + L DFG +
Sbjct: 98 ----------YTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDD 147
Query: 348 --ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYF--NMNAM 400
N+F GTP ++APE++L Y VD W+LG+ E+ PP++ N+N M
Sbjct: 148 DKTNTFCGTPEYLAPELLLGHG---YTKAVDWWTLGVLLYEMLTGLPPFYDENVNEM 201
Score = 62.3 bits (151), Expect = 3e-10
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCP----ANSFVGTPYWMA 118
+L L LH I+RD+K NILL G + L DFG + N+F GTP ++A
Sbjct: 102 LLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLA 161
Query: 119 PEVILAMDEGQYDGKVDVWSLGI 141
PE++L Y VD W+LG+
Sbjct: 162 PELLLGHG---YTKAVDWWTLGV 181
Score = 32.2 bits (73), Expect = 0.89
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+L L LH I+RD+K NILL G + L
Sbjct: 102 LLCALENLHKFNVIYRDLKPENILLDYQGHIAL 134
>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 1. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK1,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK1 plays a role in the regulation
of translational control and transcriptional activation.
It phosphorylates the transcription factors, CREB and
NFkappaB. It also phosphorylates the nucleosomal
proteins H3 and HMG-14. Increased phosphorylation of
MEK1 is associated with the development of cerebral
ischemic/hypoxic preconditioning.
Length = 290
Score = 74.6 bits (183), Expect = 2e-14
Identities = 65/241 (26%), Positives = 97/241 (40%), Gaps = 44/241 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ-LKH- 221
FE L+ +G G++G V+ R + + + M L K + A + R RQ L+H
Sbjct: 2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHI 61
Query: 222 ---PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
P + + D L+++Y G
Sbjct: 62 RQSPFLVTLHYAFQTDTKLHLILDYINGG------------------------------- 90
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
LF + KE+E+ ++ L +LH LG I+RD+K NILL G V L D
Sbjct: 91 --ELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTD 148
Query: 339 FG-----SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP 393
FG A SF GT +MAP+++ D G +D VD WS+G+ EL P
Sbjct: 149 FGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGG-HDKAVDWWSMGVLMYELLTGASP 207
Query: 394 Y 394
+
Sbjct: 208 F 208
Score = 66.9 bits (163), Expect = 6e-12
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 31 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 90
L+++Y G + KE+E+ ++ L +LH LG I+RD+K NILL
Sbjct: 82 LILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSN 141
Query: 91 GTVKLADFG-----SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
G V L DFG A SF GT +MAP+++ D G +D VD WS+G+
Sbjct: 142 GHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGG-HDKAVDWWSMGV 196
Score = 38.4 bits (89), Expect = 0.009
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 615 QLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
L+++Y G + KE+E+ ++ L +LH LG I+RD+K NILL
Sbjct: 81 HLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDS 140
Query: 675 TGTVKL 680
G V L
Sbjct: 141 NGHVVL 146
>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 1. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK1 is preferentially expressed in the liver,
lung, spleen, testes, and kidney. It mediates signaling
from Rho to the actin cytoskeleton. It is implicated in
the development of cardiac fibrosis, cardiomyocyte
apoptosis, and hyperglycemia. Mice deficient with ROCK1
display eyelids open at birth (EOB) and omphalocele
phenotypes due to the disorganization of actin filaments
in the eyelids and the umbilical ring.
Length = 371
Score = 75.4 bits (185), Expect = 2e-14
Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 44/240 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+E ++ IG G+FG V R +R++ A+K +S A +E + P
Sbjct: 45 YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 104
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
++ + D ++VMEY G D++ + +
Sbjct: 105 VVQLFYAFQDDRYLYMVMEYMPGG--DLVNL---------------------------MS 135
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS-- 341
N++V P K + V+ L+ +HS+G IHRDVK N+LL ++G +KLADFG+
Sbjct: 136 NYDV---PEKWARFYT--AEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCM 190
Query: 342 -----ASIKCPANSFVGTPYWMAPEVILAM-DEGQYDGKVDVWSLGITCIELAERKPPYF 395
++C ++ VGTP +++PEV+ + +G Y + D WS+G+ E+ P++
Sbjct: 191 KMNKEGMVRC--DTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFY 248
Score = 70.8 bits (173), Expect = 7e-13
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 13/125 (10%)
Query: 26 DHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSG-VLRGLNYLHSLGRIHRDVKAGN 84
D ++VMEY G D++ + E+ A + V+ L+ +HS+G IHRDVK N
Sbjct: 115 DRYLYMVMEYMPGG--DLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDN 172
Query: 85 ILLTETGTVKLADFGS-------ASIKCPANSFVGTPYWMAPEVILAM-DEGQYDGKVDV 136
+LL ++G +KLADFG+ ++C ++ VGTP +++PEV+ + +G Y + D
Sbjct: 173 MLLDKSGHLKLADFGTCMKMNKEGMVRC--DTAVGTPDYISPEVLKSQGGDGYYGRECDW 230
Query: 137 WSLGI 141
WS+G+
Sbjct: 231 WSVGV 235
Score = 40.4 bits (94), Expect = 0.003
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSG-VLRGLNYLHSLGRIHRDVKAGNILLTE 674
+VMEY G D++ + E+ A + V+ L+ +HS+G IHRDVK N+LL +
Sbjct: 120 MVMEYMPGG--DLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDK 177
Query: 675 TGTVKL 680
+G +KL
Sbjct: 178 SGHLKL 183
>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C zeta.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, zeta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-zeta plays a critical role in activating the glucose
transport response. It is activated by glucose, insulin,
and exercise through diverse pathways. PKC-zeta also
plays a central role in maintaining cell polarity in
yeast and mammalian cells. In addition, it affects actin
remodeling in muscle cells.
Length = 327
Score = 74.7 bits (183), Expect = 2e-14
Identities = 73/309 (23%), Positives = 122/309 (39%), Gaps = 59/309 (19%)
Query: 168 REIGHGSFGAVYYARCLVSREIVAIK--KMSYLGKQCAEKWADILKEIRFLRQLKHPNTI 225
R IG GS+ V R + +I A+K K + W K + F + +P +
Sbjct: 1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHV-FEQASSNPFLV 59
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
C+ +LV+EY G D++ FH++
Sbjct: 60 GLHSCFQTTSRLFLVIEYVNG--GDLM--------FHMQ--------------------- 88
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK 345
+R L EE + + LN+LH G I+RD+K N+LL G +KL D+G
Sbjct: 89 --RQRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEG 146
Query: 346 C----PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMS 401
++F GTP ++APE++ + Y VD W+LG+ E+ + P+ +
Sbjct: 147 LGPGDTTSTFCGTPNYIAPEILRGEE---YGFSVDWWALGVLMFEMMAGRSPFDII---- 199
Query: 402 ALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTP----CLQS 457
D P + + D+ + + I R P + ++ A L D C
Sbjct: 200 -------TDNPDMNTEDY-LFQVILEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQPQ 251
Query: 458 SDWSDTFAH 466
+ +SD +H
Sbjct: 252 TGFSDIKSH 260
Score = 68.9 bits (168), Expect = 2e-12
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 13 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHS 72
+P + C+ +LV+EY G +R L EE + + LN+LH
Sbjct: 55 NPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQRKLPEEHARFYAAEICIALNFLHE 114
Query: 73 LGRIHRDVKAGNILLTETGTVKLADFGSASIKC----PANSFVGTPYWMAPEVILAMDEG 128
G I+RD+K N+LL G +KL D+G ++F GTP ++APE++ +
Sbjct: 115 RGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEE-- 172
Query: 129 QYDGKVDVWSLGI 141
Y VD W+LG+
Sbjct: 173 -YGFSVDWWALGV 184
Score = 41.6 bits (97), Expect = 0.001
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 609 SSLFSPQLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAG 668
S LF LV+EY G +R L EE + + LN+LH G I+RD+K
Sbjct: 69 SRLF---LVIEYVNGGDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLD 125
Query: 669 NILLTETGTVKL 680
N+LL G +KL
Sbjct: 126 NVLLDADGHIKL 137
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 73.8 bits (181), Expect = 3e-14
Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 51/241 (21%)
Query: 161 EKIF-EDLREIGHGSFGAV----YYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRF 215
EK F + +R++G G FG V Y + E VA+K + + AD+ KEI
Sbjct: 2 EKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLK--PESGGNHIADLKKEIEI 59
Query: 216 LRQLKHPNTIEYRGCYLRD--HTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQL 273
LR L H N ++Y+G D + L+ME+ L S S ++ + + + N QQL
Sbjct: 60 LRNLYHENIVKYKGICTEDGGNGIKLIMEF-LPSGS--LKEYLPRNKNKI----NLKQQL 112
Query: 274 KCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGT 333
K + IC +G++YL S +HRD+ A N+L+
Sbjct: 113 KYAVQ---------------------IC----KGMDYLGSRQYVHRDLAARNVLVESEHQ 147
Query: 334 VKLADFG-SASIKCPANSF-----VGTP-YWMAPEVILAMDEGQYDGKVDVWSLGITCIE 386
VK+ DFG + +I+ + + +P +W APE ++ + ++ DVWS G+T E
Sbjct: 148 VKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLI---QSKFYIASDVWSFGVTLYE 204
Query: 387 L 387
L
Sbjct: 205 L 205
Score = 64.2 bits (156), Expect = 4e-11
Identities = 41/146 (28%), Positives = 76/146 (52%), Gaps = 13/146 (8%)
Query: 7 LLRQLKHPNTIEYRGCYLRD--HTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGV 63
+LR L H N ++Y+G D + L+ME+ GS + + +K + ++ +
Sbjct: 59 ILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQI 118
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPANSF-----VGTP-YW 116
+G++YL S +HRD+ A N+L+ VK+ DFG + +I+ + + +P +W
Sbjct: 119 CKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFW 178
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGIT 142
APE ++ + ++ DVWS G+T
Sbjct: 179 YAPECLI---QSKFYIASDVWSFGVT 201
Score = 36.1 bits (83), Expect = 0.063
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 615 QLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
+L+ME+ GS + + +K + ++ + +G++YL S +HRD+ A N+L+
Sbjct: 84 KLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVE 143
Query: 674 ETGTVKL 680
VK+
Sbjct: 144 SEHQVKI 150
>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase,
Cell Division Cycle 2-like 6. Serine/Threonine Kinases
(STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDC2L6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDC2L6 is also called CDK8-like and was
previously referred to as CDK11. However, this is a
confusing nomenclature as CDC2L6 is distinct from
CDC2L1, which is represented by the two protein products
from its gene, called CDK11(p110) and CDK11(p58), as
well as the caspase-processed CDK11(p46). CDK11(p110),
CDK11(p58), and CDK11(p46)do not belong to this
subfamily. CDC2L6 is an associated protein of Mediator,
a multiprotein complex that provides a platform to
connect transcriptional and chromatin regulators and
cofactors, in order to activate and mediate RNA
polymerase II transcription. CDC2L6 is localized mainly
in the nucleus amd exerts an opposing effect to CDK8 in
VP16-dependent transcriptional activation by being a
negative regulator.
Length = 317
Score = 74.3 bits (182), Expect = 3e-14
Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 61/259 (23%)
Query: 169 EIGHGSFGAVYYARCLVSREI--VAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIE 226
++G G++G VY A+ ++ A+K++ G + +EI LR+LKHPN I
Sbjct: 8 KVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSA-----CREIALLRELKHPNVIA 62
Query: 227 YRGCYLR--DHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
+ +L D WL+ +Y II+ H +
Sbjct: 63 LQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASK------------------------- 97
Query: 285 FEVHKRPLK--EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT----ETGTVKLAD 338
+K+P++ + ++ +L G++YLH+ +HRD+K NIL+ E G VK+AD
Sbjct: 98 --ANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIAD 155
Query: 339 FGSASI-KCP------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 391
G A + P + V T ++ APE++L Y +D+W++G EL +
Sbjct: 156 MGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGAR--HYTKAIDIWAIGCIFAELLTSE 213
Query: 392 PPYFNMNAMSALYHIAQND 410
P ++H Q D
Sbjct: 214 P----------IFHCRQED 222
Score = 72.4 bits (177), Expect = 1e-13
Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 23/156 (14%)
Query: 6 SLLRQLKHPNTIEYRGCYLR--DHTAWLVMEYCLGSASDIIEVH------KRPLK--EEE 55
+LLR+LKHPN I + +L D WL+ +Y II+ H K+P++
Sbjct: 50 ALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSM 109
Query: 56 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT----ETGTVKLADFGSASI-KCP---- 106
+ ++ +L G++YLH+ +HRD+K NIL+ E G VK+AD G A + P
Sbjct: 110 VKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPL 169
Query: 107 --ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
+ V T ++ APE++L Y +D+W++G
Sbjct: 170 ADLDPVVVTFWYRAPELLLGAR--HYTKAIDIWAIG 203
Score = 33.1 bits (75), Expect = 0.54
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 616 LVMEYCLGSASDIIEVH------KRPLK--EEEIAAICSGVLRGLNYLHSLGRIHRDVKA 667
L+ +Y II+ H K+P++ + ++ +L G++YLH+ +HRD+K
Sbjct: 77 LLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKP 136
Query: 668 GNILLT----ETGTVKL 680
NIL+ E G VK+
Sbjct: 137 ANILVMGEGPERGRVKI 153
>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase,
Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK)
family; Focal Adhesion Kinase (FAK); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FAK is a
cytoplasmic (or nonreceptor) tyr kinase that contains an
autophosphorylation site and a FERM domain at the
N-terminus, a central tyr kinase domain, proline-rich
regions, and a C-terminal FAT (focal adhesion targeting)
domain. FAK activity is dependent on integrin-mediated
cell adhesion, which facilitates N-terminal
autophosphorylation. Full activation is achieved by the
phosphorylation of its two adjacent A-loop tyrosines.
FAK is important in mediating signaling initiated at
sites of cell adhesions and at growth factor receptors.
Through diverse molecular interactions, FAK functions as
a biosensor or integrator to control cell motility. It
is a key regulator of cell survival, proliferation,
migration and invasion, and thus plays an important role
in the development and progression of cancer. Src binds
to autophosphorylated FAK forming the FAK-Src dual
kinase complex, which is activated in a wide variety of
tumor cells and generates signals promoting growth and
metastasis. FAK is being developed as a target for
cancer therapy.
Length = 270
Score = 73.6 bits (181), Expect = 3e-14
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 24/150 (16%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGV 63
+ ++RQ HP+ ++ G + ++ W+VME LG ++V+K L + +
Sbjct: 58 AYIMRQFDHPHIVKLIGV-ITENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQL 116
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG------------SASIKCPANSFV 111
L YL S +HRD+ A N+L++ VKL DFG ++ K P
Sbjct: 117 STALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIK--- 173
Query: 112 GTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
WMAPE I + ++ DVW G+
Sbjct: 174 ----WMAPESI---NFRRFTSASDVWMFGV 196
Score = 70.5 bits (173), Expect = 3e-13
Identities = 62/264 (23%), Positives = 95/264 (35%), Gaps = 67/264 (25%)
Query: 168 REIGHGSFGAVY---YARCLVSREIVAIKKMSYLGKQCAE--KWADILKEIRFLRQLKHP 222
R IG G FG VY Y + VA+K K C L+E +RQ HP
Sbjct: 12 RCIGEGQFGDVYQGVYMSPENEKIAVAVKTC----KNCTSPSVREKFLQEAYIMRQFDHP 67
Query: 223 NTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
+ ++ G + ++ W+VME LG + + LQ K + +
Sbjct: 68 HIVKLIGV-ITENPVWIVMELAPLGE------------------LRSYLQVNKYSLDLAS 108
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG- 340
L + + L YL S +HRD+ A N+L++ VKL DFG
Sbjct: 109 LILY---------------SYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGL 153
Query: 341 -----------SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
++ K P WMAPE I + ++ DVW G+ E+
Sbjct: 154 SRYLEDESYYKASKGKLPIK-------WMAPESI---NFRRFTSASDVWMFGVCMWEILM 203
Query: 390 R-KPPYFNMNAMSALYHIAQNDTP 412
P+ + + I +
Sbjct: 204 LGVKPFQGVKNNDVIGRIENGERL 227
Score = 42.8 bits (101), Expect = 4e-04
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 616 LVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
+VME LG ++V+K L + + L YL S +HRD+ A N+L++
Sbjct: 83 IVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSS 142
Query: 675 TGTVKL 680
VKL
Sbjct: 143 PDCVKL 148
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase,
REarranged during Transfection protein. Protein
Tyrosine Kinase (PTK) family; RET (REarranged during
Transfection) protein; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. RET is a
receptor tyr kinase (RTK) containing an extracellular
region with four cadherin-like repeats, a
calcium-binding site, and a cysteine-rich domain, a
transmembrane segment, and an intracellular catalytic
domain. It is part of a multisubunit complex that binds
glial-derived neurotropic factor (GDNF) family ligands
(GFLs) including GDNF, neurturin, artemin, and
persephin. GFLs bind RET along with four GPI-anchored
coreceptors, bringing two RET molecules together,
leading to autophosphorylation, activation, and
intracellular signaling. RET is essential for the
development of the sympathetic, parasympathetic and
enteric nervous systems, and the kidney. RET disruption
by germline mutations causes diseases in humans
including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and
three related inherited cancers: multiple endocrine
neoplasia type 2A (MEN2A), MEN2B, and familial medullary
thyroid carcinoma (FMTC).
Length = 290
Score = 73.8 bits (181), Expect = 3e-14
Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 27/230 (11%)
Query: 170 IGHGSFGAVYYA-----RCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
+G G FG V A + VA+K + + D+L E L+Q+ HP+
Sbjct: 8 LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSS--ELRDLLSEFNLLKQVNHPHV 65
Query: 225 IEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
I+ G +D L++EY GS + ++ GNR L
Sbjct: 66 IKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSS--------YLD 117
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
N + R L ++ + + RG+ YL + +HRD+ A N+L+ E +K++DFG +
Sbjct: 118 NPDE--RALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSR 175
Query: 344 IKCPANSFVGTPY------WMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
+S+V WMA E ++ + Y + DVWS G+ E+
Sbjct: 176 DVYEEDSYVKRSKGRIPVKWMAIE---SLFDHIYTTQSDVWSFGVLLWEI 222
Score = 62.7 bits (152), Expect = 1e-10
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 47/203 (23%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEY-----------------CLGSASDIIEVHK 48
+LL+Q+ HP+ I+ G +D L++EY SD
Sbjct: 55 NLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSS 114
Query: 49 -------RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA 101
R L ++ + + RG+ YL + +HRD+ A N+L+ E +K++DFG +
Sbjct: 115 YLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLS 174
Query: 102 SIKCPANSFVGTPY------WMAPEVILAMDEGQYDGKVDVWSLG------ITPGSLKDP 149
+S+V WMA E ++ + Y + DVWS G +T G P
Sbjct: 175 RDVYEEDSYVKRSKGRIPVKWMAIE---SLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYP 231
Query: 150 EIAELFDKEDPEKIFEDLREIGH 172
IA PE++F +L + G+
Sbjct: 232 GIA-------PERLF-NLLKTGY 246
Score = 32.6 bits (74), Expect = 0.68
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 634 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
R L ++ + + RG+ YL + +HRD+ A N+L+ E +K+
Sbjct: 122 RALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKI 168
>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C.
Serine/Threonine Kinases (STKs), Atypical Protein Kinase
C (aPKC) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
aPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. aPKCs only require
phosphatidylserine (PS) for activation. They contain a
C2-like region, instead of a calcium-binding (C2) region
found in classical PKCs, in their regulatory domain.
There are two aPKC isoforms, zeta and iota. aPKCs are
involved in many cellular functions including
proliferation, migration, apoptosis, polarity
maintenance and cytoskeletal regulation. They also play
a critical role in the regulation of glucose metabolism
and in the pathogenesis of type 2 diabetes.
Length = 329
Score = 74.5 bits (183), Expect = 3e-14
Identities = 66/245 (26%), Positives = 100/245 (40%), Gaps = 54/245 (22%)
Query: 168 REIGHGSFGAVYYARCLVSREIVAIK--KMSYLGKQCAEKWADILKEIRFLRQLKHPNTI 225
R IG GS+ V +R I A+K K + W K + F HP +
Sbjct: 1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHV-FETASNHPFLV 59
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
C+ + + V+E+ G D++ FH++
Sbjct: 60 GLHSCFQTESRLFFVIEFVSG--GDLM--------FHMQ--------------------- 88
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK 345
+R L EE + + LN+LH G I+RD+K N+LL G +KL D+G
Sbjct: 89 --RQRKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYG----M 142
Query: 346 CPAN--------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIE-LAERKPPYFN 396
C +F GTP ++APE++ D Y VD W+LG+ E +A R P F+
Sbjct: 143 CKEGIRPGDTTSTFCGTPNYIAPEILRGED---YGFSVDWWALGVLMFEMMAGRSP--FD 197
Query: 397 MNAMS 401
+ MS
Sbjct: 198 IVGMS 202
Score = 69.5 bits (170), Expect = 1e-12
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 13 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHS 72
HP + C+ + + V+E+ G +R L EE + + LN+LH
Sbjct: 55 HPFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQRKLPEEHARFYSAEISLALNFLHE 114
Query: 73 LGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN--------SFVGTPYWMAPEVILA 124
G I+RD+K N+LL G +KL D+G C +F GTP ++APE++
Sbjct: 115 RGIIYRDLKLDNVLLDAEGHIKLTDYG----MCKEGIRPGDTTSTFCGTPNYIAPEILRG 170
Query: 125 MDEGQYDGKVDVWSLGI 141
D Y VD W+LG+
Sbjct: 171 ED---YGFSVDWWALGV 184
Score = 41.0 bits (96), Expect = 0.002
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 609 SSLFSPQLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAG 668
S LF V+E+ G +R L EE + + LN+LH G I+RD+K
Sbjct: 69 SRLF---FVIEFVSGGDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERGIIYRDLKLD 125
Query: 669 NILLTETGTVKL 680
N+LL G +KL
Sbjct: 126 NVLLDAEGHIKL 137
>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 2. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK2 was the first identified target of
activated RhoA, and was found to play a role in stress
fiber and focal adhesion formation. It is prominently
expressed in the brain, heart, and skeletal muscles. It
is implicated in vascular and neurological disorders,
such as hypertension and vasospasm of the coronary and
cerebral arteries. ROCK2 is also activated by caspase-2
cleavage, resulting in thrombin-induced microparticle
generation in response to cell activation. Mice
deficient in ROCK2 show intrauterine growth retardation
and embryonic lethality because of placental
dysfunction.
Length = 370
Score = 74.7 bits (183), Expect = 3e-14
Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 44/240 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
++ ++ IG G+FG V R S+++ A+K +S A +E + P
Sbjct: 45 YDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 104
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
++ + D ++VMEY G D++ + +
Sbjct: 105 VVQLFCAFQDDKYLYMVMEYMPGG--DLVNL---------------------------MS 135
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG--- 340
N++V ++ K + V+ L+ +HS+G IHRDVK N+LL + G +KLADFG
Sbjct: 136 NYDVPEKWAK-----FYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCM 190
Query: 341 ----SASIKCPANSFVGTPYWMAPEVILAM-DEGQYDGKVDVWSLGITCIELAERKPPYF 395
+ ++C ++ VGTP +++PEV+ + +G Y + D WS+G+ E+ P++
Sbjct: 191 KMDETGMVRC--DTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFY 248
Score = 69.7 bits (170), Expect = 1e-12
Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 13/137 (9%)
Query: 14 PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSG-VLRGLNYLHS 72
P ++ + D ++VMEY G D++ + E+ A + V+ L+ +HS
Sbjct: 103 PWVVQLFCAFQDDKYLYMVMEYMPGG--DLVNLMSNYDVPEKWAKFYTAEVVLALDAIHS 160
Query: 73 LGRIHRDVKAGNILLTETGTVKLADFG-------SASIKCPANSFVGTPYWMAPEVILAM 125
+G IHRDVK N+LL + G +KLADFG + ++C ++ VGTP +++PEV+ +
Sbjct: 161 MGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRC--DTAVGTPDYISPEVLKSQ 218
Query: 126 -DEGQYDGKVDVWSLGI 141
+G Y + D WS+G+
Sbjct: 219 GGDGYYGRECDWWSVGV 235
Score = 40.8 bits (95), Expect = 0.002
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSG-VLRGLNYLHSLGRIHRDVKAGNILLTE 674
+VMEY G D++ + E+ A + V+ L+ +HS+G IHRDVK N+LL +
Sbjct: 120 MVMEYMPGG--DLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDK 177
Query: 675 TGTVKL 680
G +KL
Sbjct: 178 HGHLKL 183
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility.
It plays a role in the signaling of the growth factors
PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha
have been detected in many transformed cell lines and
several human tumors. In addition, PKC-alpha is required
for HER2 dependent breast cancer invasion.
Length = 323
Score = 74.3 bits (182), Expect = 3e-14
Identities = 70/243 (28%), Positives = 105/243 (43%), Gaps = 55/243 (22%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADI---LKEIRFLRQL- 219
F L +G GSFG V A + E+ AIK L K + D+ + E R L
Sbjct: 2 FNFLMVLGKGSFGKVMLAERKGTDELYAIK---ILKKDVVIQDDDVECTMVEKRVLALQD 58
Query: 220 KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
K P + C+ + VMEY G D++ +H++ +G F E
Sbjct: 59 KPPFLTQLHSCFQTVDRLYFVMEYVNGG--DLM--------YHIQQVGK-------FKEP 101
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
A+F EI+ GL +LH G I+RD+K N++L G +K+ADF
Sbjct: 102 QAVF---------YAAEISV-------GLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADF 145
Query: 340 GSASIKCPAN--------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 391
G C + +F GTP ++APE+I G+ VD W+ G+ E+ +
Sbjct: 146 G----MCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGK---SVDWWAYGVLLYEMLAGQ 198
Query: 392 PPY 394
PP+
Sbjct: 199 PPF 201
Score = 68.9 bits (168), Expect = 2e-12
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 34/201 (16%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGS--ASDIIEVHKRPLKEEEIAAICSGVL 64
L Q K P + C+ + VMEY G I +V K KE + + +
Sbjct: 54 LALQDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGK--FKEPQAVFYAAEIS 111
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN--------SFVGTPYW 116
GL +LH G I+RD+K N++L G +K+ADFG C + +F GTP +
Sbjct: 112 VGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFG----MCKEHMVDGVTTRTFCGTPDY 167
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGITPGSL---KDPEIAELFDKEDPEKIFEDLREIGHG 173
+APE+I G+ VD W+ G+ + + P FD ED +++F+ + E H
Sbjct: 168 IAPEIIAYQPYGK---SVDWWAYGVLLYEMLAGQPP-----FDGEDEDELFQSIME--HN 217
Query: 174 SFGAVYYARCLVSREIVAIKK 194
V Y + L S+E V+I K
Sbjct: 218 ----VSYPKSL-SKEAVSICK 233
Score = 34.2 bits (78), Expect = 0.26
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 616 LVMEYCLGS--ASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
VMEY G I +V K KE + + + GL +LH G I+RD+K N++L
Sbjct: 78 FVMEYVNGGDLMYHIQQVGK--FKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLD 135
Query: 674 ETGTVKL 680
G +K+
Sbjct: 136 SEGHIKI 142
>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of
cAMP-dependent protein kinase-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), Fission yeast Suppressor of loss of
cAMP-dependent protein kinase (Sck1)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sck1-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of fungal proteins
with similarity to the Schizosaccharomyces pombe STK
Sck1. Sck1 plays a role in trehalase activation
triggered by glucose and a nitrogen source. Trehalase
catalyzes the cleavage of the disaccharide trehalose to
glucose. Trehalose, as a carbohydrate reserve and stress
metabolite, plays an important role in the response of
yeast to environmental changes.
Length = 330
Score = 74.2 bits (182), Expect = 4e-14
Identities = 72/243 (29%), Positives = 104/243 (42%), Gaps = 62/243 (25%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYRG 229
IG G+FG VY R +R I A+K +S KEI +++ H TI R
Sbjct: 1 IGKGTFGQVYQVRKKDTRRIYAMKVLSK-------------KEIVAKKEVAH--TIGERN 45
Query: 230 ---CYLRDHTAWLV-MEYCLGSASDII---------EVHWIEREFHVEGMGNRLQQLKCF 276
L D + ++V +++ + SD+ E+ W LQ+ F
Sbjct: 46 ILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSGGELFW------------HLQKEGRF 93
Query: 277 TEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 336
+E A F I VL L +LH ++RD+K NILL TG + L
Sbjct: 94 SEDRAKF---------------YIAELVL-ALEHLHKYDIVYRDLKPENILLDATGHIAL 137
Query: 337 ADFGSASIKCPA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP 392
DFG + N+F GT ++APEV+L DE Y VD WSLG+ E+
Sbjct: 138 CDFGLSKANLTDNKTTNTFCGTTEYLAPEVLL--DEKGYTKHVDFWSLGVLVFEMCCGWS 195
Query: 393 PYF 395
P++
Sbjct: 196 PFY 198
Score = 65.0 bits (158), Expect = 4e-11
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPA----NSFVGTPYWMAPEVI 122
L +LH ++RD+K NILL TG + L DFG + N+F GT ++APEV+
Sbjct: 109 LEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVL 168
Query: 123 LAMDEGQYDGKVDVWSLGI 141
L DE Y VD WSLG+
Sbjct: 169 L--DEKGYTKHVDFWSLGV 185
Score = 29.1 bits (65), Expect = 9.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 652 LNYLHSLGRIHRDVKAGNILLTETGTVKL 680
L +LH ++RD+K NILL TG + L
Sbjct: 109 LEHLHKYDIVYRDLKPENILLDATGHIAL 137
>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Human Fyn-related kinase (Frk) and similar
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Frk and
Srk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Frk, also known as Rak, is specifically
expressed in liver, lung, kidney, intestine, mammary
glands, and the islets of Langerhans. Rodent homologs
were previously referred to as GTK (gastrointestinal tyr
kinase), BSK (beta-cell Src-like kinase), or IYK
(intestinal tyr kinase). Studies in mice reveal that Frk
is not essential for viability. It plays a role in the
signaling that leads to cytokine-induced beta-cell death
in Type I diabetes. It also regulates beta-cell number
during embryogenesis and early in life.
Length = 261
Score = 72.8 bits (179), Expect = 4e-14
Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 52/266 (19%)
Query: 158 EDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLR 217
E + LR++G G FG V+ + VA+K + K D L E + ++
Sbjct: 2 EIDRTSIQLLRKLGAGQFGEVWEGLWNNTTP-VAVKTL----KPGTMDPKDFLAEAQIMK 56
Query: 218 QLKHPNTIE-YRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCF 276
+L+HP I+ Y C L + ++V E
Sbjct: 57 KLRHPKLIQLYAVCTLEE-PIYIVTE---------------------------------L 82
Query: 277 TEHFALFNFEVHK--RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
++ +L + R LK ++ + + V G+ YL + IHRD+ A N+L+ E
Sbjct: 83 MKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNIC 142
Query: 335 KLADFGSASI--KCPANSFVGTPY---WMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
K+ADFG A + + + G + W APE L ++ K DVWS GI E+
Sbjct: 143 KVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALY---NRFSIKSDVWSFGILLTEIVT 199
Query: 390 R-KPPYFNMNAMSALYHIAQN-DTPC 413
+ PY M L + Q PC
Sbjct: 200 YGRMPYPGMTNAEVLQQVDQGYRMPC 225
Score = 66.7 bits (163), Expect = 5e-12
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 5 SSLLRQLKHPNTIE-YRGCYLRD--HTAWLVMEYCLGSASDIIEVHK-RPLKEEEIAAIC 60
+ ++++L+HP I+ Y C L + + +M+Y GS + ++ R LK ++ +
Sbjct: 52 AQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKY--GSLLEYLQGGAGRALKLPQLIDMA 109
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI--KCPANSFVGTPY--- 115
+ V G+ YL + IHRD+ A N+L+ E K+ADFG A + + + G +
Sbjct: 110 AQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIK 169
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLGI 141
W APE L ++ K DVWS GI
Sbjct: 170 WTAPEAALY---NRFSIKSDVWSFGI 192
Score = 36.2 bits (84), Expect = 0.043
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 634 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
R LK ++ + + V G+ YL + IHRD+ A N+L+ E K+
Sbjct: 98 RALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKV 144
>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK2
is specifically translocated to the mitochondria during
dopaminergic cell death. Specific substrates include the
microtubule-associated proteins DCX and Tau, as well as
TIF-IA which is involved in ribosomal RNA synthesis
regulation. Mice deficient in Jnk2 show protection
against arthritis, type 1 diabetes, atherosclerosis,
abdominal aortic aneurysm, cardiac cell death,
TNF-induced liver damage, and tumor growth, indicating
that JNK2 may play roles in the pathogenesis of these
diseases.
Length = 359
Score = 74.3 bits (182), Expect = 4e-14
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHT------AWLVMEYCLGSASDIIEVHKRPLKEEEIAAIC 60
LL+ + H N I + + +LVME + +I + L E ++ +
Sbjct: 73 LLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIHME---LDHERMSYLL 129
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCP---ANSFVGTPYWM 117
+L G+ +LHS G IHRD+K NI++ T+K+ DFG A C +V T Y+
Sbjct: 130 YQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYR 189
Query: 118 APEVILAMDEGQYDGKVDVWSLGITPGSL 146
APEVIL M Y VD+WS+G G L
Sbjct: 190 APEVILGM---GYKENVDIWSVGCIMGEL 215
Score = 72.8 bits (178), Expect = 1e-13
Identities = 78/285 (27%), Positives = 116/285 (40%), Gaps = 53/285 (18%)
Query: 162 KIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSY-LGKQCAEKWADILKEIRFLRQLK 220
K ++ L+ IG G+ G V A V VA+KK+S Q K A +E+ L+ +
Sbjct: 21 KRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRA--YRELVLLKCVN 78
Query: 221 HPNTIEYRGCYLRDHT------AWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLK 274
H N I + + +LVME + +I + E E M L Q+
Sbjct: 79 HKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIHM-----ELDHERMSYLLYQML 133
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
C G+ +LHS G IHRD+K NI++ T+
Sbjct: 134 C-------------------------------GIKHLHSAGIIHRDLKPSNIVVKSDCTL 162
Query: 335 KLADFGSASIKCP---ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 391
K+ DFG A C +V T Y+ APEVIL M Y VD+WS+G EL +
Sbjct: 163 KILDFGLARTACTNFMMTPYVVTRYYRAPEVILGM---GYKENVDIWSVGCIMGELVKGS 219
Query: 392 PPYFNMNAMSALYH-IAQNDTPCLQSSDWSVIKTISSTAERKPPY 435
+ + + I Q TP + + + T+ + E +P Y
Sbjct: 220 VIFQGTDHIDQWNKVIEQLGTPSAEFMN-RLQPTVRNYVENRPQY 263
Score = 39.2 bits (91), Expect = 0.007
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 604 NNSNYSSL---FSPQ----------LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLR 650
N+ N SL F+PQ LVME + +I + L E ++ + +L
Sbjct: 78 NHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIHME---LDHERMSYLLYQMLC 134
Query: 651 GLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
G+ +LHS G IHRD+K NI++ T+K+
Sbjct: 135 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKI 164
>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C eta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), eta isoform, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta
is predominantly expressed in squamous epithelia, where
it plays a crucial role in the signaling of cell-type
specific differentiation. It is also expressed in pro-B
cells and early-stage thymocytes, and acts as a key
regulator in early B-cell development. PKC-eta increases
glioblastoma multiforme (GBM) proliferation and
resistance to radiation, and is being developed as a
therapeutic target for the management of GBM.
Length = 320
Score = 73.4 bits (180), Expect = 5e-14
Identities = 66/235 (28%), Positives = 98/235 (41%), Gaps = 47/235 (20%)
Query: 168 REIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADI---LKEIRFLR-QLKHPN 223
R +G GSFG V AR S + A+K L K + D+ + E R L HP
Sbjct: 1 RVLGKGSFGKVMLARLKESGRLYAVK---VLKKDVILQDDDVECTMTEKRILSLARNHPF 57
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
+ C+ + VME+ G D++ FH+ Q+ + F E A F
Sbjct: 58 LTQLYCCFQTPDRLFFVMEFVNGG--DLM--------FHI-------QKSRRFDEARARF 100
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
+ + L +LH G I+RD+K N+LL G KLADFG
Sbjct: 101 ----------------YAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCK 144
Query: 344 IK----CPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
++F GTP ++APE+ + E Y VD W++G+ E+ P+
Sbjct: 145 EGIFNGKTTSTFCGTPDYIAPEI---LQEMLYGPSVDWWAMGVLLYEMLCGHAPF 196
Score = 67.6 bits (165), Expect = 4e-12
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHK-RPLKEEEIAAICSGVL 64
SL R HP + C+ + VME+ G + + K R E + +
Sbjct: 50 SLARN--HPFLTQLYCCFQTPDRLFFVMEFVNG-GDLMFHIQKSRRFDEARARFYAAEIT 106
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK----CPANSFVGTPYWMAPE 120
L +LH G I+RD+K N+LL G KLADFG ++F GTP ++APE
Sbjct: 107 SALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPE 166
Query: 121 VILAMDEGQYDGKVDVWSLGI 141
+ + E Y VD W++G+
Sbjct: 167 I---LQEMLYGPSVDWWAMGV 184
Score = 33.7 bits (77), Expect = 0.38
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+ L +LH G I+RD+K N+LL G KL
Sbjct: 105 ITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKL 137
>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein
Serine/Threonine Kinase, 70 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 70 kDa
ribosomal protein S6 kinase (p70S6K) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The p70S6K subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. p70S6K (or S6K)
contains only one catalytic kinase domain, unlike p90
ribosomal S6 kinases (RSKs). It acts as a downstream
effector of the STK mTOR (mammalian Target of Rapamycin)
and plays a role in the regulation of the translation
machinery during protein synthesis. p70S6K also plays a
pivotal role in regulating cell size and glucose
homeostasis. Its targets include S6, the translation
initiation factor eIF3, and the insulin receptor
substrate IRS-1, among others. Mammals contain two
isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta).
Length = 323
Score = 73.7 bits (181), Expect = 5e-14
Identities = 63/236 (26%), Positives = 95/236 (40%), Gaps = 44/236 (18%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYLGK----QCAEKWADILKEIRFLRQLKHP 222
L+ +G G +G V+ R + + I M L K + + A E L +KHP
Sbjct: 1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHP 60
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
++ + +L++EY G E H+E G ++ CF
Sbjct: 61 FIVDLIYAFQTGGKLYLILEYLSGG----------ELFMHLEREGIFMEDTACF------ 104
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-- 340
S + L +LH G I+RD+K NILL G VKL DFG
Sbjct: 105 -----------------YLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLC 147
Query: 341 --SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
S ++F GT +MAPE+++ G+ VD WSLG ++ PP+
Sbjct: 148 KESIHEGTVTHTFCGTIEYMAPEILMRSGHGK---AVDWWSLGALMYDMLTGAPPF 200
Score = 68.3 bits (167), Expect = 3e-12
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 3 AGSSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAI-CS 61
A ++L +KHP ++ + +L++EY L + + + + E+ A S
Sbjct: 49 AERNILEAVKHPFIVDLIYAFQTGGKLYLILEY-LSGGELFMHLEREGIFMEDTACFYLS 107
Query: 62 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASIKCPANSFVGTPYWM 117
+ L +LH G I+RD+K NILL G VKL DFG S ++F GT +M
Sbjct: 108 EISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYM 167
Query: 118 APEVILAMDEGQYDGKVDVWSLG 140
APE+++ G+ VD WSLG
Sbjct: 168 APEILMRSGHGK---AVDWWSLG 187
Score = 37.9 bits (88), Expect = 0.016
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 646 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
S + L +LH G I+RD+K NILL G VKL
Sbjct: 107 SEISLALEHLHQQGIIYRDLKPENILLDAQGHVKL 141
>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine
Kinase, C-ros. Protein Tyrosine Kinases (PTK) family;
C-ros and Drosophila Sevenless proteins; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The
proto-oncogene c-ros encodes an orphan receptor tyr
kinase (RTK) with an unknown ligand. RTKs contain an
extracellular ligand-binding domain, a transmembrane
region, and an intracellular tyr kinase domain. RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. C-ros is
expressed in embryonic cells of the kidney, intestine
and lung, but disappears soon after birth. It persists
only in the adult epididymis. Male mice bearing inactive
mutations of c-ros lack the initial segment of the
epididymis and are infertile. The Drosophila protein,
Sevenless, is required for the specification of the R7
photoreceptor cell during eye development.
Length = 269
Score = 72.6 bits (178), Expect = 6e-14
Identities = 75/261 (28%), Positives = 109/261 (41%), Gaps = 61/261 (23%)
Query: 170 IGHGSFGAVYYARCLV-----SREI-VAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+G G+FG VY S I VA+K + G EK + LKE + HPN
Sbjct: 3 LGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRK-GATDQEK-KEFLKEAHLMSNFNHPN 60
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
++ G L + +++ME L D++ ++ R+ VE G L LK
Sbjct: 61 IVKLLGVCLLNEPQYIIME--LMEGGDLL--SYL-RDARVERFGPPLLTLK--------- 106
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG-----TVKLAD 338
E+ IC V +G YL + IHRD+ A N L++E G VK+ D
Sbjct: 107 ------------ELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGD 154
Query: 339 FGSASIKCPANSFVGTPY------------WMAPEVILAMDEGQYDGKVDVWSLGITCIE 386
FG A + Y WMAPE +L +G++ + DVWS G+ E
Sbjct: 155 FGL------ARDIYKSDYYRKEGEGLLPVRWMAPESLL---DGKFTTQSDVWSFGVLMWE 205
Query: 387 -LAERKPPYFNMNAMSALYHI 406
L + PY +N L H+
Sbjct: 206 ILTLGQQPYPALNNQEVLQHV 226
Score = 59.9 bits (145), Expect = 1e-09
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 37/163 (22%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEE---------E 55
+ L+ HPN ++ G L + +++ME L D++ + E E
Sbjct: 50 AHLMSNFNHPNIVKLLGVCLLNEPQYIIME--LMEGGDLLSYLRDARVERFGPPLLTLKE 107
Query: 56 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG-----TVKLADFGSASIKCPANSF 110
+ IC V +G YL + IHRD+ A N L++E G VK+ DFG A
Sbjct: 108 LLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGL------ARDI 161
Query: 111 VGTPY------------WMAPEVILAMDEGQYDGKVDVWSLGI 141
+ Y WMAPE +L +G++ + DVWS G+
Sbjct: 162 YKSDYYRKEGEGLLPVRWMAPESLL---DGKFTTQSDVWSFGV 201
Score = 33.3 bits (76), Expect = 0.40
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 640 EIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 676
E+ IC V +G YL + IHRD+ A N L++E G
Sbjct: 107 ELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKG 143
>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK1
specifically binds with JAMP (JNK1-associated membrane
protein), which regulates the duration of JNK1 activity
in response to stimuli. Specific JNK1 substrates include
Itch and SG10, which are implicated in Th2 responses and
airway inflammation, and microtubule dynamics and
axodendritic length, respectively. Mice deficient in
Jnk1 are protected against arthritis, obesity, type 2
diabetes, cardiac cell death, and non-alcoholic liver
disease, suggesting that JNK1 may play roles in the
pathogenesis of these diseases.
Length = 364
Score = 73.2 bits (179), Expect = 1e-13
Identities = 77/287 (26%), Positives = 120/287 (41%), Gaps = 57/287 (19%)
Query: 162 KIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSY-LGKQCAEKWADILKEIRFLRQLK 220
K +++L+ IG G+ G V A + VAIKK+S Q K A +E+ ++ +
Sbjct: 24 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRA--YRELVLMKCVN 81
Query: 221 HPNTIEYRGCYLRDHT------AWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLK 274
H N I + + ++VME + +I++ E E M L Q+
Sbjct: 82 HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQM-----ELDHERMSYLLYQML 136
Query: 275 CFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 334
C G+ +LHS G IHRD+K NI++ T+
Sbjct: 137 C-------------------------------GIKHLHSAGIIHRDLKPSNIVVKSDCTL 165
Query: 335 KLADFGSASIKCPANSFVGTP-----YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
K+ DFG A + SF+ TP Y+ APEVIL M Y VD+WS+G E+ +
Sbjct: 166 KILDFGLA--RTAGTSFMMTPYVVTRYYRAPEVILGMG---YKENVDIWSVGCIMGEMIK 220
Query: 390 RKPPYFNMNAMSALYH-IAQNDTPCLQSSDWSVIKTISSTAERKPPY 435
+ + + I Q TPC + + T+ + E +P Y
Sbjct: 221 GGVLFPGTDHIDQWNKVIEQLGTPCPEFMK-KLQPTVRTYVENRPKY 266
Score = 69.7 bits (170), Expect = 1e-12
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 13/122 (10%)
Query: 30 WLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 89
++VME + +I++ L E ++ + +L G+ +LHS G IHRD+K NI++
Sbjct: 105 YIVMELMDANLCQVIQME---LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKS 161
Query: 90 TGTVKLADFGSASIKCPANSFVGTP-----YWMAPEVILAMDEGQYDGKVDVWSLGITPG 144
T+K+ DFG A + SF+ TP Y+ APEVIL M Y VD+WS+G G
Sbjct: 162 DCTLKILDFGLA--RTAGTSFMMTPYVVTRYYRAPEVILGMG---YKENVDIWSVGCIMG 216
Query: 145 SL 146
+
Sbjct: 217 EM 218
Score = 38.5 bits (89), Expect = 0.012
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 610 SLFSPQ----------LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLG 659
++F+PQ +VME + +I++ L E ++ + +L G+ +LHS G
Sbjct: 90 NVFTPQKSLEEFQDVYIVMELMDANLCQVIQME---LDHERMSYLLYQMLCGIKHLHSAG 146
Query: 660 RIHRDVKAGNILLTETGTVKL 680
IHRD+K NI++ T+K+
Sbjct: 147 IIHRDLKPSNIVVKSDCTLKI 167
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine
Kinase, Muscle-specific kinase. Protein Tyrosine Kinase
(PTK) family; Muscle-specific kinase (Musk); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Musk is a receptor tyr kinase (RTK) containing an
extracellular region with four immunoglobulin-like
domains and a cysteine-rich cluster, a transmembrane
segment, and an intracellular catalytic domain. Musk is
expressed and concentrated in the postsynaptic membrane
in skeletal muscle. It is essential for the
establishment of the neuromuscular junction (NMJ), a
peripheral synapse that conveys signals from motor
neurons to muscle cells. Agrin, a large proteoglycan
released from motor neurons, stimulates Musk
autophosphorylation and activation, leading to the
clustering of acetylcholine receptors (AChRs). To date,
there is no evidence to suggest that agrin binds
directly to Musk. Mutations in AChR, Musk and other
partners are responsible for diseases of the NMJ, such
as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 71.8 bits (176), Expect = 1e-13
Identities = 69/265 (26%), Positives = 106/265 (40%), Gaps = 36/265 (13%)
Query: 158 EDPEKIFEDLREIGHGSFGAVYYARC--LVSRE---IVAIKKMSYLGKQCAEKWADILKE 212
E P E +R+IG G+FG V+ AR L+ E +VA+K + + A+ AD +E
Sbjct: 1 EYPRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLK--EEASADMQADFQRE 58
Query: 213 IRFLRQLKHPNTIEYRGCYLRDHTAWLVMEY-CLGSASDIIE---VHWIEREFHVEGMGN 268
+ + HPN ++ G L+ EY G ++ + H
Sbjct: 59 AALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSAR 118
Query: 269 RLQQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 328
+ PL E I V G+ YL +HRD+ N L+
Sbjct: 119 KCGLNPL---------------PLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLV 163
Query: 329 TETGTVKLADFG-SASI----KCPANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGI 382
E VK+ADFG S +I A+ P WM PE I +Y + DVW+ G+
Sbjct: 164 GENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFY---NRYTTESDVWAYGV 220
Query: 383 TCIEL-AERKPPYFNMNAMSALYHI 406
E+ + PY+ M +Y++
Sbjct: 221 VLWEIFSYGMQPYYGMAHEEVIYYV 245
Score = 51.8 bits (124), Expect = 5e-07
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 50 PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASI----K 104
PL E I V G+ YL +HRD+ N L+ E VK+ADFG S +I
Sbjct: 126 PLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY 185
Query: 105 CPANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGI 141
A+ P WM PE I +Y + DVW+ G+
Sbjct: 186 YKASENDAIPIRWMPPESIFY---NRYTTESDVWAYGV 220
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 72.4 bits (177), Expect = 1e-13
Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 61/244 (25%)
Query: 170 IGHGSFGAV----------YYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQL 219
+G G+FG V YYA ++ +E++ K ++ A L E R L+
Sbjct: 3 LGKGTFGKVILVKEKATGRYYAMKILKKEVIVAK----------DEVAHTLTENRVLQNS 52
Query: 220 KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
+HP + + VMEY G E FH L + + F+E
Sbjct: 53 RHPFLTALKYSFQTHDRLCFVMEYANGG----------ELFFH-------LSRERVFSED 95
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRI-HRDVKAGNILLTETGTVKLAD 338
A F + ++ L+YLHS + +RD+K N++L + G +K+ D
Sbjct: 96 RARF----------------YGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITD 139
Query: 339 FG--SASIKCPAN--SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
FG IK A +F GTP ++APEV +++ Y VD W LG+ E+ + P+
Sbjct: 140 FGLCKEGIKDGATMKTFCGTPEYLAPEV---LEDNDYGRAVDWWGLGVVMYEMMCGRLPF 196
Query: 395 FNMN 398
+N +
Sbjct: 197 YNQD 200
Score = 64.7 bits (157), Expect = 5e-11
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
+L+ +HP + + VMEY G +R E+ + ++
Sbjct: 48 VLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSA 107
Query: 67 LNYLHSLGRI-HRDVKAGNILLTETGTVKLADFG--SASIKCPAN--SFVGTPYWMAPEV 121
L+YLHS + +RD+K N++L + G +K+ DFG IK A +F GTP ++APEV
Sbjct: 108 LDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEV 167
Query: 122 ILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDPEKIFE 165
+++ Y VD W LG+ + + F +D EK+FE
Sbjct: 168 ---LEDNDYGRAVDWWGLGVVMYEMMCGRLP--FYNQDHEKLFE 206
Score = 30.8 bits (69), Expect = 2.8
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRI-HRDVKAGNILLTE 674
VMEY G +R E+ + ++ L+YLHS + +RD+K N++L +
Sbjct: 72 FVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDK 131
Query: 675 TGTVKL 680
G +K+
Sbjct: 132 DGHIKI 137
>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C delta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), delta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta
plays a role in cell cycle regulation and programmed
cell death in many cell types. It slows down cell
proliferation, inducing cell cycle arrest and enhancing
cell differentiation. PKC-delta is also involved in the
regulation of transcription as well as immune and
inflammatory responses. It plays a central role in the
genotoxic stress response that leads to DNA
damaged-induced apoptosis.
Length = 316
Score = 71.9 bits (176), Expect = 2e-13
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 15/132 (11%)
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI 344
F++++ EI +C GL +LHS G I+RD+K N++L G +K+ADFG
Sbjct: 93 FDLYRATFYAAEI--VC-----GLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKE 145
Query: 345 KC----PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAM 400
A++F GTP ++APE++ + +Y VD WS G+ E+ + P F+ +
Sbjct: 146 NVFGDNRASTFCGTPDYIAPEILQGL---KYTFSVDWWSFGVLLYEMLIGQSP-FHGDDE 201
Query: 401 SALYHIAQNDTP 412
L+ + DTP
Sbjct: 202 DELFESIRVDTP 213
Score = 70.0 bits (171), Expect = 7e-13
Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 11/111 (9%)
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKC----PANSFVGTPYWMA 118
++ GL +LHS G I+RD+K N++L G +K+ADFG A++F GTP ++A
Sbjct: 105 IVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIA 164
Query: 119 PEVILAMDEGQYDGKVDVWSLGITPGSLKDPEIAEL-FDKEDPEKIFEDLR 168
PE++ + +Y VD WS G+ L + I + F +D +++FE +R
Sbjct: 165 PEILQGL---KYTFSVDWWSFGVL---LYEMLIGQSPFHGDDEDELFESIR 209
Score = 35.3 bits (81), Expect = 0.10
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
++ GL +LHS G I+RD+K N++L G +K+
Sbjct: 105 IVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKI 137
>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine
Kinases, Class EphA Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
most class EphA receptors including EphA3, EphA4, EphA5,
and EphA7, but excluding EphA1, EphA2 and EphA10;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. One exception is EphA4, which also
binds ephrins-B2/B3. EphRs contain an ephrin-binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). Ephrin/EphR interaction mainly results in
cell-cell repulsion or adhesion, making it important in
neural development and plasticity, cell morphogenesis,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis. EphARs and ephrin-A
ligands are expressed in multiple areas of the
developing brain, especially in the retina and tectum.
They are part of a system controlling retinotectal
mapping.
Length = 267
Score = 71.1 bits (174), Expect = 2e-13
Identities = 68/246 (27%), Positives = 96/246 (39%), Gaps = 56/246 (22%)
Query: 168 REIGHGSFGAVYYARCLV--SREI-VAIK--KMSYLGKQCAEKWADILKEIRFLRQLKHP 222
+ IG G FG V R + REI VAIK K Y KQ D L E + Q HP
Sbjct: 10 KVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQ----RRDFLSEASIMGQFDHP 65
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
N I G + +V EY + D L+ F +
Sbjct: 66 NIIHLEGVVTKSKPVMIVTEYMENGSLDAF--------------------LRKHDGQFTV 105
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA 342
++ + G+ G+ YL +G +HRD+ A NIL+ K++DFG +
Sbjct: 106 I------------QLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLS 153
Query: 343 SI--KCPANSFVGT----PY-WMAPEVILAMDEGQYDGKVDVWSLGITCIEL---AERKP 392
+ P ++ P W APE I ++ DVWS GI E+ ER
Sbjct: 154 RVLEDDPEAAYTTRGGKIPIRWTAPEAIAYR---KFTSASDVWSYGIVMWEVMSYGER-- 208
Query: 393 PYFNMN 398
PY+ M+
Sbjct: 209 PYWEMS 214
Score = 62.6 bits (152), Expect = 1e-10
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGV 63
+S++ Q HPN I G + +V EY GS + H ++ + G+
Sbjct: 56 ASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGI 115
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI--KCPANSFVGT----PY-W 116
G+ YL +G +HRD+ A NIL+ K++DFG + + P ++ P W
Sbjct: 116 ASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRW 175
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGI 141
APE I ++ DVWS GI
Sbjct: 176 TAPEAIAYR---KFTSASDVWSYGI 197
Score = 32.6 bits (74), Expect = 0.62
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 616 LVMEYCL-GSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
+V EY GS + H ++ + G+ G+ YL +G +HRD+ A NIL+
Sbjct: 82 IVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILV 139
>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
beta. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, beta isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
The PKC beta isoforms (I and II), generated by
alternative splicing of a single gene, are
preferentially activated by hyperglycemia-induced DAG in
retinal tissues. This is implicated in diabetic
microangiopathy such as ischemia, neovascularization,
and abnormal vasodilator function. PKC-beta also plays
an important role in VEGF signaling. In addition,
glucose regulates proliferation in retinal endothelial
cells via PKC-betaI. PKC-beta is also being explored as
a therapeutic target in cancer. It contributes to tumor
formation and is involved in the tumor host mechanisms
of inflammation and angiogenesis.
Length = 323
Score = 72.0 bits (176), Expect = 2e-13
Identities = 72/243 (29%), Positives = 104/243 (42%), Gaps = 55/243 (22%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADI---LKEIRFLR-QL 219
F L +G GSFG V A + E+ AIK L K + D+ + E R L
Sbjct: 2 FNFLMVLGKGSFGKVMLAERKGTDELYAIK---ILKKDVVIQDDDVECTMVEKRVLALSG 58
Query: 220 KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
K P + C+ + VMEY G D++ + + QQ+ F E
Sbjct: 59 KPPFLTQLHSCFQTMDRLYFVMEYVNGG--DLM--------YQI-------QQVGRFKEP 101
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
A+F EIA GL +LHS G I+RD+K N++L G +K+ADF
Sbjct: 102 HAVF---------YAAEIAI-------GLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADF 145
Query: 340 GSASIKCPAN--------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 391
G C N +F GTP ++APE+I G+ VD W+ G+ E+ +
Sbjct: 146 G----MCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGK---SVDWWAFGVLLYEMLAGQ 198
Query: 392 PPY 394
P+
Sbjct: 199 APF 201
Score = 69.6 bits (170), Expect = 1e-12
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 33/221 (14%)
Query: 12 KHPNTIEYRGCYLRDHTAWLVMEYCLGS--ASDIIEVHKRPLKEEEIAAICSGVLRGLNY 69
K P + C+ + VMEY G I +V + KE + + GL +
Sbjct: 59 KPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQVGR--FKEPHAVFYAAEIAIGLFF 116
Query: 70 LHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN--------SFVGTPYWMAPEV 121
LHS G I+RD+K N++L G +K+ADFG C N +F GTP ++APE+
Sbjct: 117 LHSKGIIYRDLKLDNVMLDSEGHIKIADFG----MCKENMWDGVTTKTFCGTPDYIAPEI 172
Query: 122 ILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDPEKIFEDLREIGHGSFGAVYYA 181
I G+ VD W+ G+ + + F+ ED +++F+ + E H V Y
Sbjct: 173 IAYQPYGK---SVDWWAFGVLLYEMLAGQAP--FEGEDEDELFQSIME--HN----VAYP 221
Query: 182 RCLVSREIVAIKK---MSYLGKQ--CAEKWADILKEIRFLR 217
+ + S+E VAI K + GK+ C + +KE F R
Sbjct: 222 KSM-SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFR 261
Score = 33.8 bits (77), Expect = 0.32
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 616 LVMEYCLGS--ASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
VMEY G I +V + KE + + GL +LHS G I+RD+K N++L
Sbjct: 78 FVMEYVNGGDLMYQIQQVGR--FKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLD 135
Query: 674 ETGTVKL 680
G +K+
Sbjct: 136 SEGHIKI 142
>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 8.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK8 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK8
can act as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDK8 phosphorylates cyclin
H, a subunit of the general transcription factor TFIIH,
which results in the inhibition of TFIIH-dependent
phosphorylation of the C-terminal domain (CTD) of RNAP
II, facilitating the inhibition of transcription. It has
also been shown to promote transcription by a mechanism
that is likely to involve RNAP II phosphorylation. CDK8
also functions as a stimulus-specific positive
coregulator of p53 transcriptional responses.
Length = 317
Score = 71.6 bits (175), Expect = 2e-13
Identities = 67/259 (25%), Positives = 112/259 (43%), Gaps = 61/259 (23%)
Query: 169 EIGHGSFGAVYYARCLVSREI--VAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIE 226
++G G++G VY A+ ++ A+K++ G + +EI LR+LKHPN I
Sbjct: 8 KVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSA-----CREIALLRELKHPNVIS 62
Query: 227 YRGCYLR--DHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
+ +L D WL+ +Y II+ H +
Sbjct: 63 LQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASK------------------------- 97
Query: 285 FEVHKRP--LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT----ETGTVKLAD 338
+K+P L + ++ +L G++YLH+ +HRD+K NIL+ E G VK+AD
Sbjct: 98 --ANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIAD 155
Query: 339 FGSASI-KCP------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 391
G A + P + V T ++ APE++L Y +D+W++G EL +
Sbjct: 156 MGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGAR--HYTKAIDIWAIGCIFAELLTSE 213
Query: 392 PPYFNMNAMSALYHIAQND 410
P ++H Q D
Sbjct: 214 P----------IFHCRQED 222
Score = 71.6 bits (175), Expect = 2e-13
Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 23/156 (14%)
Query: 6 SLLRQLKHPNTIEYRGCYLR--DHTAWLVMEYCLGSASDIIEVH------KRP--LKEEE 55
+LLR+LKHPN I + +L D WL+ +Y II+ H K+P L
Sbjct: 50 ALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGM 109
Query: 56 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT----ETGTVKLADFGSASI-KCP---- 106
+ ++ +L G++YLH+ +HRD+K NIL+ E G VK+AD G A + P
Sbjct: 110 VKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPL 169
Query: 107 --ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
+ V T ++ APE++L Y +D+W++G
Sbjct: 170 ADLDPVVVTFWYRAPELLLGAR--HYTKAIDIWAIG 203
Score = 32.0 bits (72), Expect = 1.2
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 616 LVMEYCLGSASDIIEVH------KRP--LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKA 667
L+ +Y II+ H K+P L + ++ +L G++YLH+ +HRD+K
Sbjct: 77 LLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKP 136
Query: 668 GNILLT----ETGTVKL 680
NIL+ E G VK+
Sbjct: 137 ANILVMGEGPERGRVKI 153
>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional.
Length = 391
Score = 72.7 bits (178), Expect = 2e-13
Identities = 52/148 (35%), Positives = 73/148 (49%), Gaps = 21/148 (14%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVME------YCLGSASDIIEVHKRPLKEEEIAA 58
+ +LR + HP+ I+ +G + + L++ YC +A KR + +I A
Sbjct: 134 AHILRAINHPSIIQLKGTFTYNKFTCLILPRYKTDLYCYLAA-------KRNIAICDILA 186
Query: 59 ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANS-----FVGT 113
I VLR + YLH IHRD+KA NI + G V L DFG+A N+ + GT
Sbjct: 187 IERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGT 246
Query: 114 PYWMAPEVILAMDEGQYDGKVDVWSLGI 141
APE +LA D Y VD+WS GI
Sbjct: 247 IATNAPE-LLARDP--YGPAVDIWSAGI 271
Score = 68.1 bits (166), Expect = 5e-12
Identities = 68/225 (30%), Positives = 95/225 (42%), Gaps = 35/225 (15%)
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
L+ + KR + +I AI VLR + YLH IHRD+KA NI + G V L DFG+
Sbjct: 169 LYCYLAAKRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGA 228
Query: 342 ASIKCPANS-----FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
A N+ + GT APE +LA D Y VD+WS GI E+A F
Sbjct: 229 ACFPVDINANKYYGWAGTIATNAPE-LLARDP--YGPAVDIWSAGIVLFEMATCHDSLFE 285
Query: 397 MNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQ 456
+ + D C SD IK I + P F ++A + L I +
Sbjct: 286 KDGL---------DGDC--DSDRQ-IKLIIRRSGTHPNEFPIDAQANLDEIYIG--LAKK 331
Query: 457 SSD-------WSDTF------AHFVSSCLAKNPADRPSSGRLLTH 488
SS W++ + + + LA + RPS+ LL
Sbjct: 332 SSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDF 376
Score = 42.3 bits (99), Expect = 8e-04
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 579 SSSQAHNRHHHHHPVTHLSQHSYNNNNSNYSSLFSPQLVME-YCLGSASDIIEVHKRPLK 637
++++AH +HP + ++ N ++ L P+ + YC +A KR +
Sbjct: 130 TATEAHILRAINHPSIIQLKGTFTYNK--FTCLILPRYKTDLYCYLAA-------KRNIA 180
Query: 638 EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 678
+I AI VLR + YLH IHRD+KA NI + G V
Sbjct: 181 ICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDV 221
>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, 90 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 90 kDa
ribosomal protein S6 kinase (RSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. RSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family.
They are activated by signaling inputs from
extracellular regulated kinase (ERK) and
phosphoinositide dependent kinase 1 (PDK1). ERK
phosphorylates and activates the CTD of RSK, serving as
a docking site for PDK1, which phosphorylates and
activates the NTD, which in turn phosphorylates all
known RSK substrates. RSKs act as downstream effectors
of mitogen-activated protein kinase (MAPK) and play key
roles in mitogen-activated cell growth, differentiation,
and survival. Mammals possess four RSK isoforms (RSK1-4)
from distinct genes. RSK proteins are also referred to
as MAP kinase-activated protein kinases (MAPKAPKs),
p90-RSKs, or p90S6Ks.
Length = 318
Score = 71.8 bits (176), Expect = 2e-13
Identities = 65/228 (28%), Positives = 100/228 (43%), Gaps = 44/228 (19%)
Query: 167 LREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILK---EIRFLRQLKHPN 223
L+ +G GSFG V+ R + + + M L K+ K D ++ E L ++ HP
Sbjct: 1 LKVLGQGSFGKVFLVRKITGPDAGQLYAMKVL-KKATLKVRDRVRTKMERDILAEVNHPF 59
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
++ + + +L++++ G D+ RL + FTE F
Sbjct: 60 IVKLHYAFQTEGKLYLILDFLRGG--DLF---------------TRLSKEVMFTEEDVKF 102
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG--- 340
E+A L++LHSLG I+RD+K NILL E G +KL DFG
Sbjct: 103 YLA---------ELAL-------ALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSK 146
Query: 341 -SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
S + A SF GT +MAPEV+ + + D WS G+ E+
Sbjct: 147 ESIDHEKKAYSFCGTVEYMAPEVV---NRRGHTQSADWWSFGVLMFEM 191
Score = 68.3 bits (167), Expect = 2e-12
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG----SASIKCPANSFVGTPYWMAPEV 121
L++LHSLG I+RD+K NILL E G +KL DFG S + A SF GT +MAPEV
Sbjct: 110 ALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEV 169
Query: 122 ILAMDEGQYDGKVDVWSLGI 141
+ + + D WS G+
Sbjct: 170 V---NRRGHTQSADWWSFGV 186
Score = 43.3 bits (102), Expect = 3e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 651 GLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
L++LHSLG I+RD+K NILL E G +KL
Sbjct: 110 ALDHLHSLGIIYRDLKPENILLDEEGHIKL 139
>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional.
Length = 392
Score = 71.8 bits (176), Expect = 4e-13
Identities = 43/120 (35%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
LF + PL E+ I +L L YLH G IHRDVK NI L E L DFG+
Sbjct: 172 LFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGA 231
Query: 342 A-----SIKCPAN-SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYF 395
A P + GT +PE +LA+D Y K D+WS G+ E++ + F
Sbjct: 232 ACKLDAHPDTPQCYGWSGTLETNSPE-LLALDP--YCAKTDIWSAGLVLFEMSVKNVTLF 288
Score = 64.5 bits (157), Expect = 7e-11
Identities = 48/144 (33%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVM---EYCLGSASDIIEVHKRPLKEEEIAAICSGV 63
+L+ + H I Y T +VM + L + D PL E+ I +
Sbjct: 139 ILKTISHRAIINLIHAYRWKSTVCMVMPKYKCDLFTYVDRSG----PLPLEQAITIQRRL 194
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-----SIKCPAN-SFVGTPYWM 117
L L YLH G IHRDVK NI L E L DFG+A P + GT
Sbjct: 195 LEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETN 254
Query: 118 APEVILAMDEGQYDGKVDVWSLGI 141
+PE +LA+D Y K D+WS G+
Sbjct: 255 SPE-LLALDP--YCAKTDIWSAGL 275
Score = 42.9 bits (101), Expect = 4e-04
Identities = 21/48 (43%), Positives = 23/48 (47%)
Query: 633 KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
PL E+ I +L L YLH G IHRDVK NI L E L
Sbjct: 179 SGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVL 226
>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related
(NDR) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The NDR subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. NDR kinases
regulate mitosis, cell growth, embryonic development,
and neurological processes. They are also required for
proper centrosome duplication. Higher eukaryotes contain
two NDR isoforms, NDR1 and NDR2. This subfamily also
contains fungal NDR-like kinases.
Length = 364
Score = 71.2 bits (175), Expect = 4e-13
Identities = 75/281 (26%), Positives = 108/281 (38%), Gaps = 80/281 (28%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
FE ++ IG G+FG V + + I A+KK+ + +++L++ Q+ H
Sbjct: 3 FESIKVIGRGAFGEVRLVQKKDTGHIYAMKKL---------RKSEMLEK----EQVAHVR 49
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEG-MGNRLQQLKCFTEHFAL 282
R W+V Y S D ++ I E+ G M L + FTE
Sbjct: 50 A--ERDILAEADNPWVVKLYY--SFQDENYLYLI-MEYLPGGDMMTLLMKKDTFTEEETR 104
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-- 340
F E I AI S +H LG IHRD+K N+LL G +KL+DFG
Sbjct: 105 FYIA--------ETILAIDS--------IHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLC 148
Query: 341 -----------------------SASIKCP-----------------ANSFVGTPYWMAP 360
I P A S VGTP ++AP
Sbjct: 149 TGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAP 208
Query: 361 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMS 401
EV L + Y+ + D WSLG+ E+ PP+ + N
Sbjct: 209 EVFL---QTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQE 246
Score = 60.1 bits (146), Expect = 2e-09
Identities = 45/154 (29%), Positives = 64/154 (41%), Gaps = 45/154 (29%)
Query: 30 WLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 89
+L+MEY G + + K EEE + + ++ +H LG IHRD+K N+LL
Sbjct: 77 YLIMEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDA 136
Query: 90 TGTVKLADFG-------------------------SASIKCP-----------------A 107
G +KL+DFG I P A
Sbjct: 137 KGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALA 196
Query: 108 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
S VGTP ++APEV L + Y+ + D WSLG+
Sbjct: 197 YSTVGTPDYIAPEVFL---QTGYNKECDWWSLGV 227
Score = 43.1 bits (102), Expect = 4e-04
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
L+MEY G + + K EEE + + ++ +H LG IHRD+K N+LL
Sbjct: 78 LIMEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAK 137
Query: 676 GTVKL 680
G +KL
Sbjct: 138 GHIKL 142
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 69.4 bits (170), Expect = 8e-13
Identities = 76/288 (26%), Positives = 114/288 (39%), Gaps = 56/288 (19%)
Query: 168 REIGHGSFGAVYYARCL-VSREIVAIK---KMSYLGKQCAEKWADILKEIRFLRQL-KHP 222
+ +G G+FG V A +S+ +K KM +E+ A ++ E++ + L H
Sbjct: 41 KTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREA-LMSELKIMSHLGNHE 99
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
N + G ++ EYC C+ + L
Sbjct: 100 NIVNLLGACTIGGPILVITEYC------------------------------CYGD---L 126
Query: 283 FNFEVHKRP--LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
NF KR L E++ + V +G+ +L S IHRD+ A N+LLT VK+ DFG
Sbjct: 127 LNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFG 186
Query: 341 SA-SIKCPANSFV-GTPY----WMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPP 393
A I +N V G WMAPE I Y + DVWS GI E+ + P
Sbjct: 187 LARDIMNDSNYVVKGNARLPVKWMAPESIF---NCVYTFESDVWSYGILLWEIFSLGSNP 243
Query: 394 YFNMNAMSALYHIAQN----DTPCLQSSD-WSVIKTISSTAERKPPYF 436
Y M S Y + + P ++ + ++KT K P F
Sbjct: 244 YPGMPVDSKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTF 291
Score = 64.8 bits (158), Expect = 3e-11
Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 6 SLLRQLK-------HPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRP-LKEEEI 56
+L+ +LK H N + G ++ EYC G + + + L E++
Sbjct: 84 ALMSELKIMSHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDL 143
Query: 57 AAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSFV-GTP 114
+ V +G+ +L S IHRD+ A N+LLT VK+ DFG A I +N V G
Sbjct: 144 LSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNA 203
Query: 115 Y----WMAPEVILAMDEGQYDGKVDVWSLGI 141
WMAPE I Y + DVWS GI
Sbjct: 204 RLPVKWMAPESIF---NCVYTFESDVWSYGI 231
Score = 37.9 bits (88), Expect = 0.018
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 593 VTHLSQHSYNNNNSNYSSLFSPQLVM-EYCL-GSASDIIEVHKRP-LKEEEIAAICSGVL 649
++HL H N ++ P LV+ EYC G + + + L E++ + V
Sbjct: 92 MSHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVA 151
Query: 650 RGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+G+ +L S IHRD+ A N+LLT VK+
Sbjct: 152 KGMAFLASKNCIHRDLAARNVLLTHGKIVKI 182
>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 2. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 2 (FGFR2); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR2 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. There are many splice
variants of FGFR2 which show differential expression and
binding to FGF ligands. Disruption of either FGFR2 or
FGFR2b is lethal in mice, due to defects in the placenta
or severe impairment of tissue development including
lung, limb, and thyroid, respectively. Disruption of
FGFR2c in mice results in defective bone and skull
development. Genetic alterations of FGFR2 are associated
with many human skeletal disorders including Apert
syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and
Pfeiffer syndrome.
Length = 304
Score = 69.3 bits (169), Expect = 1e-12
Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 40/236 (16%)
Query: 168 REIGHGSFGAVYYARCL-----VSREIVAIKKMSYLGKQCAEK-WADILKEIRFLRQL-K 220
+ +G G FG V A L +E V + + L EK +D++ E+ ++ + K
Sbjct: 21 KPLGEGCFGQVVMAEALGIDKDKPKEAVTVA-VKMLKDDATEKDLSDLVSEMEMMKMIGK 79
Query: 221 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHF 280
H N I G +D ++++EY GN + L+
Sbjct: 80 HKNIINLLGACTQDGPLYVIVEYA--------------------SKGNLREYLRARRPPG 119
Query: 281 ALFNFEVHK---RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
+++++ + + +++ + V RG+ YL S IHRD+ A N+L+TE +K+A
Sbjct: 120 MEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIA 179
Query: 338 DFGSASIKCPANSFVGTP------YWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
DFG A + + T WMAPE A+ + Y + DVWS G+ E+
Sbjct: 180 DFGLARDVNNIDYYKKTTNGRLPVKWMAPE---ALFDRVYTHQSDVWSFGVLMWEI 232
Score = 65.4 bits (159), Expect = 2e-11
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 12 KHPNTIEYRGCYLRDHTAWLVMEYC----------------LGSASDIIEVHKRPLKEEE 55
KH N I G +D ++++EY + + DI V + ++
Sbjct: 79 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKD 138
Query: 56 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTP- 114
+ + V RG+ YL S IHRD+ A N+L+TE +K+ADFG A + + T
Sbjct: 139 LVSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTN 198
Query: 115 -----YWMAPEVILAMDEGQYDGKVDVWSLGI 141
WMAPE A+ + Y + DVWS G+
Sbjct: 199 GRLPVKWMAPE---ALFDRVYTHQSDVWSFGV 227
Score = 41.2 bits (96), Expect = 0.002
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 618 MEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGT 677
MEY + DI V + +++ + V RG+ YL S IHRD+ A N+L+TE
Sbjct: 120 MEY----SYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNV 175
Query: 678 VKL 680
+K+
Sbjct: 176 MKI 178
>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-2 is also
referred to as ALS2CR7 (amyotrophic lateral sclerosis 2
(juvenile) chromosome region candidate 7). It may be
associated with amyotrophic lateral sclerosis 2 (ALS2),
an autosomal recessive form of juvenile ALS. The
function of PFTAIRE-2 is not yet known.
Length = 291
Score = 68.8 bits (168), Expect = 1e-12
Identities = 79/337 (23%), Positives = 134/337 (39%), Gaps = 69/337 (20%)
Query: 166 DLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTI 225
+L ++G GS+ VY ++ ++VA+K +S ++ A ++E L+ LKH N +
Sbjct: 9 NLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTA--IREASLLKGLKHANIV 66
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
T V EY +H ++ ++ G + LF F
Sbjct: 67 LLHDIIHTKETLTFVFEY----------MHTDLAQYMIQHPGG------LHPYNVRLFMF 110
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA--- 342
++ LRGL Y+H +HRD+K N+L++ G +KLADFG A
Sbjct: 111 QL-----------------LRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAK 153
Query: 343 SIKCPA-NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNM-NAM 400
SI +S V T ++ P+V+L + Y +D+W G IE+ + +P + + +
Sbjct: 154 SIPSQTYSSEVVTLWYRPPDVLLGATD--YSSALDIWGAGCIFIEMLQGQPAFPGVSDVF 211
Query: 401 SALYHIAQNDTPCLQSSDWSVIKT--------ISSTAERKPPYFNMNAMSALYHIAQNDT 452
L I W+V+ +S KP +F L + + +
Sbjct: 212 EQLEKI------------WTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLS 259
Query: 453 PCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHD 489
++ D S L P DR S+ L H
Sbjct: 260 RPPKAED-------LASQMLMMFPKDRISAQDALLHP 289
Score = 68.8 bits (168), Expect = 1e-12
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVL 64
+SLL+ LKH N + T V EY + + H L + +L
Sbjct: 54 ASLLKGLKHANIVLLHDIIHTKETLTFVFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLL 113
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SIKCPA-NSFVGTPYWMAPE 120
RGL Y+H +HRD+K N+L++ G +KLADFG A SI +S V T ++ P+
Sbjct: 114 RGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPD 173
Query: 121 VILAMDEGQYDGKVDVWSLG-----ITPGSLKDPEIAELFDKEDPEKIFEDL 167
V+L + Y +D+W G + G P ++++F E EKI+ L
Sbjct: 174 VLLGATD--YSSALDIWGAGCIFIEMLQGQPAFPGVSDVF--EQLEKIWTVL 221
Score = 36.1 bits (83), Expect = 0.057
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
V EY + + H L + +LRGL Y+H +HRD+K N+L++
Sbjct: 80 FVFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYL 139
Query: 676 GTVKLDTPDEQAGNDSSKSNSITSE-HSVQSVGVGVNPHD 714
G +KL A +++ SI S+ +S + V + P D
Sbjct: 140 GELKL------ADFGLARAKSIPSQTYSSEVVTLWYRPPD 173
>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the
Serine/Threonine Kinase, p38alpha Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38alpha subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38alpha subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38alpha, also called MAPK14, is expressed in
most tissues and is the major isoform involved in the
immune and inflammatory response. It is the central p38
MAPK involved in myogenesis. It plays a role in
regulating cell cycle check-point transition and
promoting cell differentiation. p38alpha also regulates
cell proliferation and death through crosstalk with the
JNK pathway. Its substrates include MAPK activated
protein kinase 2 (MK2), MK5, and the transcription
factors ATF2 and Mitf.
Length = 345
Score = 69.7 bits (170), Expect = 1e-12
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 36/232 (15%)
Query: 158 EDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLR 217
E PE+ +++L +G G++G+V A + VA+KK+S Q +E+R L+
Sbjct: 14 EVPER-YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-PFQSIIHAKRTYRELRLLK 71
Query: 218 QLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQL-KCF 276
+KH N I + A + E + + H+ MG L + KC
Sbjct: 72 HMKHENVIGLLDVF--------------TPARSLEEFNDVYLVTHL--MGADLNNIVKC- 114
Query: 277 TEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 336
+ L ++ + + +LRGL Y+HS IHRD+K N+ + E +K+
Sbjct: 115 -------------QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKI 161
Query: 337 ADFGSAS-IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
DFG A +V T ++ APE++L + Y+ VD+WS+G EL
Sbjct: 162 LDFGLARHTDDEMTGYVATRWYRAPEIML--NWMHYNQTVDIWSVGCIMAEL 211
Score = 65.1 bits (158), Expect = 4e-11
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 27/149 (18%)
Query: 7 LLRQLKHPNTI-------------EYRGCYLRDHTAWLVMEYCLGS-ASDIIEVHKRPLK 52
LL+ +KH N I E+ YL H +G+ ++I++ K L
Sbjct: 69 LLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHL--------MGADLNNIVKCQK--LT 118
Query: 53 EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS-IKCPANSFV 111
++ + + +LRGL Y+HS IHRD+K N+ + E +K+ DFG A +V
Sbjct: 119 DDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV 178
Query: 112 GTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
T ++ APE++L + Y+ VD+WS+G
Sbjct: 179 ATRWYRAPEIML--NWMHYNQTVDIWSVG 205
Score = 39.3 bits (91), Expect = 0.007
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 626 SDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL----- 680
++I++ K L ++ + + +LRGL Y+HS IHRD+K N+ + E +K+
Sbjct: 109 NNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGL 166
Query: 681 --DTPDEQAG 688
T DE G
Sbjct: 167 ARHTDDEMTG 176
>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase alpha.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) alpha isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKalpha is expressed
ubiquitously in many tissues. It plays a role in the
regulation of peripheral actin reorganization and
neurite outgrowth. It may also play a role in the
transferrin iron uptake pathway.
Length = 332
Score = 69.3 bits (169), Expect = 1e-12
Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 51/245 (20%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIK---KMSYLGKQ---CAEKWADILKEIRFLR 217
FE L+ IG G+FG V + + ++ A+K K L + C + D+L
Sbjct: 3 FEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVN----G 58
Query: 218 QLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
+ T+ Y + ++ +LVM+Y +G G+ L L F
Sbjct: 59 DNQWITTLHY--AFQDENNLYLVMDYYVG--------------------GDLLTLLSKFE 96
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
+ E R E + AI S +H L +HRD+K NIL+ G ++LA
Sbjct: 97 DRLP----EDMARFYLAEMVIAIDS--------VHQLHYVHRDIKPDNILMDMNGHIRLA 144
Query: 338 DFGSA-----SIKCPANSFVGTPYWMAPEVILAMDEGQ--YDGKVDVWSLGITCIELAER 390
DFGS ++ VGTP +++PE++ AM++G+ Y + D WSLG+ E+
Sbjct: 145 DFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYG 204
Query: 391 KPPYF 395
+ P++
Sbjct: 205 ETPFY 209
Score = 65.5 bits (159), Expect = 3e-11
Identities = 39/126 (30%), Positives = 72/126 (57%), Gaps = 12/126 (9%)
Query: 26 DHTAWLVMEYCLGSASDIIEVHKR---PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKA 82
++ +LVM+Y +G D++ + + L E+ + ++ ++ +H L +HRD+K
Sbjct: 73 ENNLYLVMDYYVGG--DLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKP 130
Query: 83 GNILLTETGTVKLADFGSA-----SIKCPANSFVGTPYWMAPEVILAMDEGQ--YDGKVD 135
NIL+ G ++LADFGS ++ VGTP +++PE++ AM++G+ Y + D
Sbjct: 131 DNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECD 190
Query: 136 VWSLGI 141
WSLG+
Sbjct: 191 WWSLGV 196
Score = 31.2 bits (70), Expect = 2.3
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 598 QHSYNNNNSNYSSLFSPQLVMEYCLGSASDIIEVHKR---PLKEEEIAAICSGVLRGLNY 654
+++ + N+ Y LVM+Y +G D++ + + L E+ + ++ ++
Sbjct: 67 HYAFQDENNLY-------LVMDYYVGG--DLLTLLSKFEDRLPEDMARFYLAEMVIAIDS 117
Query: 655 LHSLGRIHRDVKAGNILLTETGTVKL 680
+H L +HRD+K NIL+ G ++L
Sbjct: 118 VHQLHYVHRDIKPDNILMDMNGHIRL 143
>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase beta.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) beta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKbeta is expressed
ubiquitously in many tissues.
Length = 331
Score = 68.9 bits (168), Expect = 2e-12
Identities = 67/250 (26%), Positives = 112/250 (44%), Gaps = 61/250 (24%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILK--EIRFLRQLKH 221
FE ++ IG G+FG V + + I A+K ++ KW ++LK E R+ ++
Sbjct: 3 FEIIKVIGRGAFGEVAVVKMKHTERIYAMKILN--------KW-EMLKRAETACFREERN 53
Query: 222 P---------NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQ 272
T+ Y + ++ +LVM+Y +G G+ L
Sbjct: 54 VLVNGDCQWITTLHY--AFQDENYLYLVMDYYVG--------------------GDLLTL 91
Query: 273 LKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 332
L F + E R E + AI S +H L +HRD+K N+LL G
Sbjct: 92 LSKFEDRLP----EDMARFYIAEMVLAIHS--------IHQLHYVHRDIKPDNVLLDMNG 139
Query: 333 TVKLADFGSA-----SIKCPANSFVGTPYWMAPEVILAMDE--GQYDGKVDVWSLGITCI 385
++LADFGS ++ VGTP +++PE++ AM++ G+Y + D WSLG+
Sbjct: 140 HIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMY 199
Query: 386 ELAERKPPYF 395
E+ + P++
Sbjct: 200 EMLYGETPFY 209
Score = 64.6 bits (157), Expect = 5e-11
Identities = 39/126 (30%), Positives = 72/126 (57%), Gaps = 12/126 (9%)
Query: 26 DHTAWLVMEYCLGSASDIIEVHKR---PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKA 82
++ +LVM+Y +G D++ + + L E+ + ++ ++ +H L +HRD+K
Sbjct: 73 ENYLYLVMDYYVGG--DLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKP 130
Query: 83 GNILLTETGTVKLADFGSA-----SIKCPANSFVGTPYWMAPEVILAMDE--GQYDGKVD 135
N+LL G ++LADFGS ++ VGTP +++PE++ AM++ G+Y + D
Sbjct: 131 DNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECD 190
Query: 136 VWSLGI 141
WSLG+
Sbjct: 191 WWSLGV 196
Score = 30.7 bits (69), Expect = 3.1
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 616 LVMEYCLGSASDIIEVHKR---PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
LVM+Y +G D++ + + L E+ + ++ ++ +H L +HRD+K N+LL
Sbjct: 78 LVMDYYVGG--DLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLL 135
Query: 673 TETGTVKL 680
G ++L
Sbjct: 136 DMNGHIRL 143
>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional.
Length = 440
Score = 69.7 bits (170), Expect = 2e-12
Identities = 102/427 (23%), Positives = 167/427 (39%), Gaps = 100/427 (23%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKM----SYLGKQCAEKWADILKEIRFLRQLKHPNTI 225
IG+GSFG VY A C+ + E VAIKK+ Y + E+ ++ L H N I
Sbjct: 74 IGNGSFGVVYEAICIDTSEKVAIKKVLQDPQYKNR-----------ELLIMKNLNHINII 122
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDI---IEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
+L+D + E + +I + + +I + H + +H+A
Sbjct: 123 -----FLKD---YYYTECFKKNEKNIFLNVVMEFIPQTVHK------------YMKHYAR 162
Query: 283 FNFEVHKRPLKEEEIAA--ICSGVLRGLNYLHSLGRIHRDVKAGNILLT-ETGTVKLADF 339
N H PL ++ + +C R L Y+HS HRD+K N+L+ T T+KL DF
Sbjct: 163 NN---HALPLFLVKLYSYQLC----RALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDF 215
Query: 340 GSASIKCPAN---SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
GSA S++ + ++ APE++L Y +D+WSLG E+ P +
Sbjct: 216 GSAKNLLAGQRSVSYICSRFYRAPELMLG--ATNYTTHIDLWSLGCIIAEMILGYPIFSG 273
Query: 397 MNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQ 456
+++ L I Q V+ T P + M+ Y A P ++
Sbjct: 274 QSSVDQLVRIIQ------------VLGT--------PTEDQLKEMNPNY--ADIKFPDVK 311
Query: 457 SSDWSDTFA--------HFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSV--------L 500
D F +F+S L P R + L R P + L
Sbjct: 312 PKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLRDPCIKLPKYIDKL 371
Query: 501 VDLIRRTKAAVRDLDNLNYRKM---------KKILMADGADTESTIDPDDTPDEQAGNDS 551
DL A ++++ + RK+ K+ LM+D D D ++ D+
Sbjct: 372 PDLFNFCDAEIKEMSDACRRKIIPKCTYEAYKEFLMSDENDANIIADKISKDFGESNIDA 431
Query: 552 SKSNSIT 558
+N+
Sbjct: 432 KNNNAKN 438
Score = 53.1 bits (127), Expect = 4e-07
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 65 RGLNYLHSLGRIHRDVKAGNILLT-ETGTVKLADFGSASIKCPAN---SFVGTPYWMAPE 120
R L Y+HS HRD+K N+L+ T T+KL DFGSA S++ + ++ APE
Sbjct: 181 RALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSVSYICSRFYRAPE 240
Query: 121 VILAMDEGQYDGKVDVWSLG 140
++L Y +D+WSLG
Sbjct: 241 LMLG--ATNYTTHIDLWSLG 258
Score = 29.2 bits (65), Expect = 9.1
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 650 RGLNYLHSLGRIHRDVKAGNILLT-ETGTVKL 680
R L Y+HS HRD+K N+L+ T T+KL
Sbjct: 181 RALAYIHSKFICHRDLKPQNLLIDPNTHTLKL 212
>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
Kinases, Met and Ron. Protein Tyrosine Kinase (PTK)
family; Met and Ron; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Met and
Ron are receptor tyr kinases (RTKs) composed of an
alpha-beta heterodimer. The extracellular alpha chain is
disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic domain. Binding
to their ligands leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Met binds to the ligand, hepatocyte growth
factor/scatter factor (HGF/SF), and is also called the
HGF receptor. HGF/Met signaling plays a role in growth,
transformation, cell motility, invasion, metastasis,
angiogenesis, wound healing, and tissue regeneration.
Aberrant expression of Met through mutations or gene
amplification is associated with many human cancers
including hereditary papillary renal and gastric
carcinomas. The ligand for Ron is macrophage stimulating
protein (MSP). Ron signaling is important in regulating
cell motility, adhesion, proliferation, and apoptosis.
Aberrant Ron expression is implicated in tumorigenesis
and metastasis.
Length = 262
Score = 67.1 bits (164), Expect = 4e-12
Identities = 68/263 (25%), Positives = 103/263 (39%), Gaps = 68/263 (25%)
Query: 168 REIGHGSFGAVYYARCLVSREI---VAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
R IG G FG VY+ + S A+K ++ + E+ LKE ++ HPN
Sbjct: 1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITD--LEEVEQFLKEGIIMKDFSHPNV 58
Query: 225 IEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
+ G L + LV + + +H L N
Sbjct: 59 LSLLGICLPSEGSPLV--------------------------------VLPYMKHGDLRN 86
Query: 285 F---EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
F E H +K+ + V +G+ YL S +HRD+ A N +L E+ TVK+ADFG
Sbjct: 87 FIRSETHNPTVKD--LIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGL 144
Query: 342 A---------------SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIE 386
A K P WMA E ++ ++ K DVWS G+ E
Sbjct: 145 ARDIYDKEYYSVHNHTGAKLPVK-------WMALE---SLQTQKFTTKSDVWSFGVLLWE 194
Query: 387 LAER-KPPYFNMNAMSALYHIAQ 408
L R PPY ++++ ++ Q
Sbjct: 195 LMTRGAPPYPDVDSFDITVYLLQ 217
Score = 55.2 bits (133), Expect = 4e-08
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 27/152 (17%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLV-MEY-CLGSASDIIEVHKRPLKEEEIAAICSGVL 64
+++ HPN + G L + LV + Y G + I +++ V
Sbjct: 49 IMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVA 108
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---------------SIKCPANS 109
+G+ YL S +HRD+ A N +L E+ TVK+ADFG A K P
Sbjct: 109 KGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVK- 167
Query: 110 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
WMA E ++ ++ K DVWS G+
Sbjct: 168 ------WMALE---SLQTQKFTTKSDVWSFGV 190
Score = 34.0 bits (78), Expect = 0.23
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
V +G+ YL S +HRD+ A N +L E+ TVK+
Sbjct: 107 VAKGMEYLASKKFVHRDLAARNCMLDESFTVKV 139
>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 2. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK2,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK2 and MSK1 play nonredundant
roles in activating histone H3 kinases, which play
pivotal roles in compaction of the chromatin fiber. MSK2
is the required H3 kinase in response to stress stimuli
and activation of the p38 MAPK pathway. MSK2 also plays
a role in the pathogenesis of psoriasis.
Length = 332
Score = 67.7 bits (165), Expect = 5e-12
Identities = 65/241 (26%), Positives = 99/241 (41%), Gaps = 45/241 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQ-LKH- 221
FE L+ +G G++G V+ R + + + M L K + A ++ R R L+H
Sbjct: 2 FELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHV 61
Query: 222 ---PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
P + + + L+++Y G + FT
Sbjct: 62 RQSPFLVTLHYAFQTEAKLHLILDYVSGG--------------------------EMFTH 95
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
+ NF E+E+ ++ L +LH LG ++RD+K NILL G V L D
Sbjct: 96 LYQRDNF-------SEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTD 148
Query: 339 FGSA-----SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP 393
FG + K SF GT +MAPE+I +G + VD WSLGI EL P
Sbjct: 149 FGLSKEFLSEEKERTYSFCGTIEYMAPEIIRG--KGGHGKAVDWWSLGILIFELLTGASP 206
Query: 394 Y 394
+
Sbjct: 207 F 207
Score = 63.4 bits (154), Expect = 1e-10
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 31 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 90
L+++Y G + E+E+ ++ L +LH LG ++RD+K NILL
Sbjct: 82 LILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSE 141
Query: 91 GTVKLADFGSA-----SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
G V L DFG + K SF GT +MAPE+I +G + VD WSLGI
Sbjct: 142 GHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRG--KGGHGKAVDWWSLGI 195
Score = 36.9 bits (85), Expect = 0.036
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 615 QLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
L+++Y G + E+E+ ++ L +LH LG ++RD+K NILL
Sbjct: 81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDS 140
Query: 675 TGTVKL 680
G V L
Sbjct: 141 EGHVVL 146
>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine
Kinases, Apoptosis-associated tyrosine kinases. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase (Aatyk) subfamily; catalytic (c) domain.
The Aatyk subfamily is also referred to as the lemur
tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1
(Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Aatyk proteins are mostly receptor tyr kinases (RTKs)
containing a transmembrane segment and a long C-terminal
cytoplasmic tail with a catalytic domain. Aatyk1 does
not contain a transmembrane segment and is a cytoplasmic
(or nonreceptor) kinase. Aatyk proteins are classified
as tyr kinases based on overall sequence similarity and
the phylogenetic tree. However, analysis of catalytic
residues suggests that Aatyk proteins may be
multispecific kinases, functioning also as
serine/threonine kinases. They are involved in neural
differentiation, nerve growth factor (NGF) signaling,
apoptosis, and spermatogenesis.
Length = 269
Score = 66.8 bits (163), Expect = 5e-12
Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 56/264 (21%)
Query: 168 REIGHGSFGAVYY--ARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTI 225
EIG+G FG V A +S+ V +K++ ++ L+E++ R+L HPN +
Sbjct: 1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELR--ASATPDEQLLFLQEVQPYRELNHPNVL 58
Query: 226 EYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNR--LQQLKCFTEHFAL 282
+ G + LV+E+C LG + + R V M + LQ++ C
Sbjct: 59 QCLGQCIESIPYLLVLEFCPLGDLKNYLRS---NRG-MVAQMAQKDVLQRMAC------- 107
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA 342
E+A+ GL +LH IH D+ N LT +VK+ D+G A
Sbjct: 108 -------------EVAS-------GLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLA 147
Query: 343 SIKCPANSFVGTP------YWMAPEVILAMDEGQYDGKV-------DVWSLGITCIELAE 389
+ P + ++ W+APE+ ++ D ++WSLG+T EL
Sbjct: 148 LEQYPEDYYITKDCHAVPLRWLAPEL---VEIRGQDLLPKDQTKKSNIWSLGVTMWELFT 204
Query: 390 RKP-PYFNMNAMSAL-YHIAQNDT 411
PY +++ L + + D
Sbjct: 205 AADQPYPDLSDEQVLKQVVREQDI 228
Score = 56.8 bits (137), Expect = 1e-08
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 29/169 (17%)
Query: 9 RQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDII---EVHKRPLKEEEIAA-ICSGV 63
R+L HPN ++ G + LV+E+C LG + + + ++++ + V
Sbjct: 50 RELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEV 109
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTP------YWM 117
GL +LH IH D+ N LT +VK+ D+G A + P + ++ W+
Sbjct: 110 ASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWL 169
Query: 118 APEVILAMDEGQYDGKV-------DVWSLGITPGSLKDPEIAELFDKED 159
APE+ ++ D ++WSLG+T + ELF D
Sbjct: 170 APEL---VEIRGQDLLPKDQTKKSNIWSLGVT--------MWELFTAAD 207
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Fyn, together with Lck, plays a
critical role in T-cell signal transduction by
phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury.
Length = 260
Score = 66.6 bits (162), Expect = 5e-12
Identities = 72/285 (25%), Positives = 123/285 (43%), Gaps = 51/285 (17%)
Query: 158 EDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLR 217
E P + + ++++G+G FG V+ + + VA+K + G E + L+E + ++
Sbjct: 2 EIPRESLQLIKKLGNGQFGEVWMGTWNGNTK-VAVKTLK-PGTMSPESF---LEEAQIMK 56
Query: 218 QLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
+L+H LV Y + S I +I E+ +G
Sbjct: 57 KLRHDK---------------LVQLYAVVSEEPI----YIVTEYMSKG------------ 85
Query: 278 EHFALFNF--EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVK 335
+L +F + R LK + + + V G+ Y+ + IHRD+++ NIL+ + K
Sbjct: 86 ---SLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCK 142
Query: 336 LADFGSASI----KCPANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 390
+ADFG A + + A P W APE L G++ K DVWS GI EL +
Sbjct: 143 IADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY---GRFTIKSDVWSFGILLTELVTK 199
Query: 391 -KPPYFNMNAMSALYHIAQN-DTPCLQSSDWSVIKTISSTAERKP 433
+ PY MN L + + PC Q S+ + + ++ P
Sbjct: 200 GRVPYPGMNNREVLEQVERGYRMPCPQDCPISLHELMLQCWKKDP 244
Score = 56.9 bits (137), Expect = 7e-09
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEY-CLGSASDII-EVHKRPLKEEEIAAICSG 62
+ ++++L+H ++ + + ++V EY GS D + + R LK + + +
Sbjct: 52 AQIMKKLRHDKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQ 110
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI----KCPANSFVGTPY-WM 117
V G+ Y+ + IHRD+++ NIL+ + K+ADFG A + + A P W
Sbjct: 111 VAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWT 170
Query: 118 APEVILAMDEGQYDGKVDVWSLGI 141
APE L G++ K DVWS GI
Sbjct: 171 APEAALY---GRFTIKSDVWSFGI 191
Score = 31.9 bits (72), Expect = 1.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 634 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
R LK + + + V G+ Y+ + IHRD+++ NIL+
Sbjct: 97 RALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILV 135
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ack
subfamily members are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal catalytic domain, an
SH3 domain, a Cdc42-binding CRIB domain, and a
proline-rich region. They are mainly expressed in brain
and skeletal tissues and are involved in the regulation
of cell adhesion and growth, receptor degradation, and
axonal guidance. Ack1 is also associated with
androgen-independent prostate cancer progression. Tnk1
regulates TNFalpha signaling and may play an important
role in cell death.
Length = 257
Score = 66.3 bits (162), Expect = 6e-12
Identities = 64/230 (27%), Positives = 91/230 (39%), Gaps = 49/230 (21%)
Query: 169 EIGHGSFGAVYYARCLVS--REI-VAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTI 225
++G GSFG V S + I VA+K + + ++ D LKE + L H N I
Sbjct: 2 KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLK--SDKLSDIMDDFLKEAAIMHSLDHENLI 59
Query: 226 EYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
G L H +V E LGS D + R L F L +
Sbjct: 60 RLYGVVL-THPLMMVTELAPLGSLLDRL----------------RKDALGHFLIS-TLCD 101
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SAS 343
+ V +IA G+ YL S IHRD+ A NILL VK+ DFG +
Sbjct: 102 YAV--------QIAN-------GMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRA 146
Query: 344 IKCPANSFVGTPY------WMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
+ + +V + W APE ++ + DVW G+T E+
Sbjct: 147 LPQNEDHYVMEEHLKVPFAWCAPE---SLRTRTFSHASDVWMFGVTLWEM 193
Score = 64.3 bits (157), Expect = 3e-11
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICS--- 61
+++ L H N I G L H +V E LGS D + K L I+ +C
Sbjct: 48 AIMHSLDHENLIRLYGVVL-THPLMMVTELAPLGSLLD--RLRKDALGHFLISTLCDYAV 104
Query: 62 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPANSFVGTPY----- 115
+ G+ YL S IHRD+ A NILL VK+ DFG ++ + +V +
Sbjct: 105 QIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPF 164
Query: 116 -WMAPEVILAMDEGQYDGKVDVWSLGIT 142
W APE ++ + DVW G+T
Sbjct: 165 AWCAPE---SLRTRTFSHASDVWMFGVT 189
Score = 35.1 bits (81), Expect = 0.11
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 616 LVMEYC-LGSASDIIEVHKRPLKEEEIAAICS---GVLRGLNYLHSLGRIHRDVKAGNIL 671
+V E LGS D + K L I+ +C + G+ YL S IHRD+ A NIL
Sbjct: 72 MVTELAPLGSLLD--RLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNIL 129
Query: 672 LTETGTVKL 680
L VK+
Sbjct: 130 LASDDKVKI 138
>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 5. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK5
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK5 is widely expressed in many tissues.
It associates with the membrane though an N-terminal
PIP2 binding domain and also binds phospholipids via its
C-terminus. GRK5 deficiency is associated with early
Alzheimer's disease in humans and mouse models. GRK5
also plays a crucial role in the pathogenesis of
sporadic Parkinson's disease. It participates in the
regulation and desensitization of PDGFRbeta, a receptor
tyrosine kinase involved in a variety of downstream
cellular effects including cell growth, chemotaxis,
apoptosis, and angiogenesis. GRK5 also regulates
Toll-like receptor 4, which is involved in innate and
adaptive immunity.
Length = 285
Score = 65.8 bits (160), Expect = 1e-11
Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 43/237 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMS--YLGKQCAEKWADILKEIRFLRQLKH 221
F R +G G FG V + + ++ A K++ + K+ E A L E + L ++
Sbjct: 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMA--LNEKQILEKVNS 59
Query: 222 PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
+ Y LV+ G + +FH+ MGN F E A
Sbjct: 60 QFVVNLAYAYETKDALCLVLTIMNGG----------DLKFHIYNMGN-----PGFEEERA 104
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
LF A I G L LH ++RD+K NILL + G ++++D G
Sbjct: 105 LF------------YAAEILCG----LEDLHRENTVYRDLKPENILLDDYGHIRISDLGL 148
Query: 342 ASIKCPANSF----VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
A +K P VGT +MAPEV+ + +Y D W LG E+ E + P+
Sbjct: 149 A-VKIPEGESIRGRVGTVGYMAPEVL---NNQRYTLSPDYWGLGCLIYEMIEGQSPF 201
Score = 56.1 bits (135), Expect = 2e-08
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 51 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSF 110
+EE + +L GL LH ++RD+K NILL + G ++++D G A +K P
Sbjct: 99 FEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLA-VKIPEGES 157
Query: 111 ----VGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
VGT +MAPEV+ + +Y D W LG
Sbjct: 158 IRGRVGTVGYMAPEVL---NNQRYTLSPDYWGLG 188
Score = 34.2 bits (78), Expect = 0.20
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 636 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+EE + +L GL LH ++RD+K NILL + G +++
Sbjct: 99 FEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRI 143
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 65.6 bits (160), Expect = 1e-11
Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 39/235 (16%)
Query: 167 LREIGHGSFGAVYYARCL-----VSREIVAIK--KMSYLGKQCAEKWADILKEIRFLRQL 219
L E+G G+FG VY +S VAIK K + K + +E + L
Sbjct: 10 LEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKV----QQEFRQEAELMSDL 65
Query: 220 KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
+HPN + G ++ ++ EY + D+ E ++ R +G
Sbjct: 66 QHPNIVCLLGVCTKEQPTCMLFEYL--AHGDLHE--FLVRNSPHSDVG------------ 109
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
A E K L + I + G+ YL S +HRD+ A N L+ E TVK++DF
Sbjct: 110 -AESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDF 168
Query: 340 G-------SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
G + + + S + WM PE IL G++ + D+WS G+ E+
Sbjct: 169 GLSRDIYSADYYRVQSKSLLPV-RWMPPEAILY---GKFTTESDIWSFGVVLWEI 219
Score = 60.9 bits (148), Expect = 5e-10
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-----------------LGSASDIIEVHK 48
L+ L+HPN + G ++ ++ EY +G+ S V K
Sbjct: 60 ELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETV-K 118
Query: 49 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-------SA 101
L + I + G+ YL S +HRD+ A N L+ E TVK++DFG +
Sbjct: 119 SSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSAD 178
Query: 102 SIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
+ + S + WM PE IL G++ + D+WS G+
Sbjct: 179 YYRVQSKSLLPV-RWMPPEAILY---GKFTTESDIWSFGV 214
Score = 33.2 bits (76), Expect = 0.45
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 623 GSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
G+ S V K L + I + G+ YL S +HRD+ A N L+ E TVK+
Sbjct: 109 GAESGDETV-KSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKI 165
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth
Factor Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR) subfamily; catalytic (c) domain. EGFR
(HER, ErbB) subfamily members include EGFR (HER1,
ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
The EGFR proteins are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to
their activation. Instead, they are activated by
ligand-induced dimerization, resulting in the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Collectively, they can recognize a variety of
ligands including EGF, TGFalpha, and neuregulins, among
others. All four subfamily members can form homo- or
heterodimers. HER3 contains an impaired kinase domain
and depends on its heterodimerization partner for
activation. EGFR subfamily members are involved in
signaling pathways leading to a broad range of cellular
responses including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. Gain of
function alterations, through their overexpression,
deletions, or point mutations in their kinase domains,
have been implicated in various cancers. These receptors
are targets of many small molecule inhibitors and
monoclonal antibodies used in cancer therapy.
Length = 279
Score = 65.1 bits (159), Expect = 2e-11
Identities = 64/251 (25%), Positives = 96/251 (38%), Gaps = 49/251 (19%)
Query: 160 PEKIFEDLREIGHGSFGAVYYARCLVSRE----IVAIKKMSYLGKQCAEKWADILKEIRF 215
E E ++ +G G+FG VY + E VAIK + + + +IL E
Sbjct: 5 KETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVL--REETSPKANKEILDEAYV 62
Query: 216 LRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKC 275
+ + HP+ + G CL S +I +L L C
Sbjct: 63 MASVDHPHVVRLLGI-------------CLSSQVQLI---------------TQLMPLGC 94
Query: 276 FTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVK 335
++ HK + + + C + +G++YL +HRD+ A N+L+ VK
Sbjct: 95 LLDYV-----RNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVK 149
Query: 336 LADFGSASIKCPANSFV-----GTPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
+ DFG A + P WMA E IL Y K DVWS G+T EL
Sbjct: 150 ITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESIL---HRIYTHKSDVWSYGVTVWELMT 206
Query: 390 -RKPPYFNMNA 399
PY + A
Sbjct: 207 FGAKPYEGIPA 217
Score = 59.7 bits (145), Expect = 1e-09
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 37 LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 96
LG D + HK + + + C + +G++YL +HRD+ A N+L+ VK+
Sbjct: 92 LGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKIT 151
Query: 97 DFGSASIKCPANSFV-----GTPY-WMAPEVILAMDEGQYDGKVDVWSLGIT 142
DFG A + P WMA E IL Y K DVWS G+T
Sbjct: 152 DFGLAKLLDVDEKEYHAEGGKVPIKWMALESIL---HRIYTHKSDVWSYGVT 200
Score = 35.1 bits (81), Expect = 0.11
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 615 QLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL- 672
QL+ + LG D + HK + + + C + +G++YL +HRD+ A N+L+
Sbjct: 84 QLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVK 143
Query: 673 -------TETGTVKLDTPDE 685
T+ G KL DE
Sbjct: 144 TPQHVKITDFGLAKLLDVDE 163
>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 1. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK1
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK1, also called rhodopsin kinase,
belongs to the visual group of GRKs and is expressed in
retinal cells. It phosphorylates rhodopsin in rod cells,
which leads to termination of the phototransduction
cascade. Mutations in GRK1 are associated to a
recessively inherited form of stationary nightblindness
called Oguchi disease.
Length = 280
Score = 64.9 bits (158), Expect = 2e-11
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 304 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA----SIKCPANSFVGTPYWMA 359
++ GL +LH I+RD+K N+LL G V+++D G A + + GTP +MA
Sbjct: 106 IISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMA 165
Query: 360 PEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
PE++ E +YD VD ++LG+T E+ + P+
Sbjct: 166 PELLQ--GE-EYDFSVDYFALGVTLYEMIAARGPF 197
Score = 60.2 bits (146), Expect = 7e-10
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA----SIKCPANSFVGTPYWMA 118
++ GL +LH I+RD+K N+LL G V+++D G A + + GTP +MA
Sbjct: 106 IISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMA 165
Query: 119 PEVILAMDEGQYDGKVDVWSLGIT 142
PE++ E +YD VD ++LG+T
Sbjct: 166 PELLQ--GE-EYDFSVDYFALGVT 186
Score = 32.1 bits (73), Expect = 0.89
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
++ GL +LH I+RD+K N+LL G V++
Sbjct: 106 IISGLEHLHQRRIIYRDLKPENVLLDNDGNVRI 138
>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase,
Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Fer kinase is a member
of the Fes subfamily of proteins which are cytoplasmic
(or nonreceptor) tyr kinases containing an N-terminal
region with FCH (Fes/Fer/CIP4 homology) and coiled-coil
domains, followed by a SH2 domain, and a C-terminal
catalytic domain. Fer kinase is expressed in a wide
variety of tissues, and is found to reside in both the
cytoplasm and the nucleus. It plays important roles in
neuronal polarization and neurite development,
cytoskeletal reorganization, cell migration, growth
factor signaling, and the regulation of cell-cell
interactions mediated by adherens junctions and focal
adhesions. Fer kinase also regulates cell cycle
progression in malignant cells.
Length = 250
Score = 64.6 bits (157), Expect = 2e-11
Identities = 61/223 (27%), Positives = 91/223 (40%), Gaps = 53/223 (23%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILK-----EIRFLRQLKHPNT 224
+G G+FG V+ L + VA+K C E LK E R L+Q HPN
Sbjct: 3 LGKGNFGEVFKG-TLKDKTPVAVKT-------CKEDLPQELKIKFLSEARILKQYDHPNI 54
Query: 225 IEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
++ G + ++VME G G+ L L+
Sbjct: 55 VKLIGVCTQRQPIYIVMELVPG--------------------GDFLSFLR---------- 84
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI 344
K LK +++ G+ YL S IHRD+ A N L+ E +K++DFG +
Sbjct: 85 --KKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQ 142
Query: 345 K----CPANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGI 382
+ ++ P W APE A++ G+Y + DVWS GI
Sbjct: 143 EDDGIYSSSGLKQIPIKWTAPE---ALNYGRYSSESDVWSYGI 182
Score = 64.2 bits (156), Expect = 3e-11
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRP---LKEEEIAAICS 61
+ +L+Q HPN ++ G + ++VME L D + ++ LK +++
Sbjct: 43 ARILKQYDHPNIVKLIGVCTQRQPIYIVME--LVPGGDFLSFLRKKKDELKTKQLVKFAL 100
Query: 62 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK----CPANSFVGTPY-W 116
G+ YL S IHRD+ A N L+ E +K++DFG + + ++ P W
Sbjct: 101 DAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKW 160
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGI 141
APE A++ G+Y + DVWS GI
Sbjct: 161 TAPE---ALNYGRYSSESDVWSYGI 182
Score = 29.6 bits (66), Expect = 6.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 633 KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
K LK +++ G+ YL S IHRD+ A N L+ E +K+
Sbjct: 87 KDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKI 134
>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 4. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 4 (FGFR4); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR4 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Unlike other FGFRs,
there is only one splice form of FGFR4. It binds FGF1,
FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective
ligand for FGFR4. Although disruption of FGFR4 in mice
causes no obvious phenotype, in vivo inhibition of FGFR4
in cultured skeletal muscle cells resulted in an arrest
of muscle progenitor differentiation. FGF6 and FGFR4 are
uniquely expressed in myofibers and satellite cells.
FGF6/FGFR4 signaling appears to play a key role in the
regulation of muscle regeneration. A polymorphism in
FGFR4 is found in head and neck squamous cell carcinoma.
Length = 314
Score = 65.4 bits (159), Expect = 2e-11
Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 41/190 (21%)
Query: 12 KHPNTIEYRGCYLRDHTAWLVMEYC----------------LGSASDIIEVHKRPLKEEE 55
KH N I G ++ ++++EY DI +V + L ++
Sbjct: 76 KHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKD 135
Query: 56 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS-------IKCPAN 108
+ + V RG+ YL S IHRD+ A N+L+TE +K+ADFG A K +N
Sbjct: 136 LVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSN 195
Query: 109 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI------TPGSLKDPEIAELFDKEDPEK 162
+ WMAPE A+ + Y + DVWS GI T G P I E+
Sbjct: 196 GRLPVK-WMAPE---ALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPV-------EE 244
Query: 163 IFEDLREIGH 172
+F+ LRE GH
Sbjct: 245 LFKLLRE-GH 253
Score = 64.6 bits (157), Expect = 4e-11
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 38/235 (16%)
Query: 168 REIGHGSFGAVYYARCL-VSRE------IVAIKKMSYLGKQCAEKWADILKEIRFLRQL- 219
+ +G G FG V A + + VA+K + + AD++ E+ ++ +
Sbjct: 18 KPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATD--KDLADLISEMELMKLIG 75
Query: 220 KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
KH N I G ++ ++++EY + ++ REF L+ +
Sbjct: 76 KHKNIINLLGVCTQEGPLYVIVEY--AAKGNL-------REF--------LRARRPPGPD 118
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
+ +V + L +++ + V RG+ YL S IHRD+ A N+L+TE +K+ADF
Sbjct: 119 YTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADF 178
Query: 340 GSAS-------IKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
G A K +N + WMAPE A+ + Y + DVWS GI E+
Sbjct: 179 GLARGVHDIDYYKKTSNGRLPVK-WMAPE---ALFDRVYTHQSDVWSFGILMWEI 229
Score = 42.6 bits (100), Expect = 5e-04
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 627 DIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
DI +V + L +++ + V RG+ YL S IHRD+ A N+L+TE +K+
Sbjct: 122 DITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKI 175
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lck (lymphocyte-specific
kinase) and Blk are members of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) tyr
kinases. Src kinases contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Lck is expressed in T-cells and natural
killer (NK) cells. It plays a critical role in T-cell
maturation, activation, and T-cell receptor (TCR)
signaling. Lck phosphorylates ITAM (immunoreceptor tyr
activation motif) sequences on several subunits of TCRs,
leading to the activation of different second messenger
cascades. Phosphorylated ITAMs serve as binding sites
for other signaling factor such as Syk and ZAP-70,
leading to their activation and propagation of
downstream events. In addition, Lck regulates
drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 64.5 bits (157), Expect = 3e-11
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 11/146 (7%)
Query: 3 AGSSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHK-RPLKEEEIAAIC 60
A ++L++QL+HP + ++ +++ EY GS D ++ + L ++ +
Sbjct: 50 AEANLMKQLQHPRLVRLYAVVTQE-PIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMA 108
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI----KCPANSFVGTPY- 115
+ + G+ ++ IHRD++A NIL++ET K+ADFG A + + A P
Sbjct: 109 AQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIK 168
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLGI 141
W APE A++ G + K DVWS GI
Sbjct: 169 WTAPE---AINYGTFTIKSDVWSFGI 191
Score = 63.3 bits (154), Expect = 6e-11
Identities = 69/253 (27%), Positives = 106/253 (41%), Gaps = 60/253 (23%)
Query: 158 EDPEKIFEDLREIGHGSFGAV---YYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIR 214
E P + + ++++G G FG V YY VAIK + KQ + L E
Sbjct: 2 EVPRETLKLVKKLGAGQFGEVWMGYYN----GHTKVAIKSL----KQGSMSPEAFLAEAN 53
Query: 215 FLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLK 274
++QL+HP LV Y + + I +I E+ G
Sbjct: 54 LMKQLQHPR---------------LVRLYAVVTQEPI----YIITEYMENG--------- 85
Query: 275 CFTEHFALFNF----EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 330
+L +F E K L ++ + + + G+ ++ IHRD++A NIL++E
Sbjct: 86 ------SLVDFLKTPEGIK--LTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSE 137
Query: 331 TGTVKLADFGSASI----KCPANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGITCI 385
T K+ADFG A + + A P W APE A++ G + K DVWS GI
Sbjct: 138 TLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLT 194
Query: 386 ELAER-KPPYFNM 397
E+ + PY M
Sbjct: 195 EIVTYGRIPYPGM 207
Score = 33.7 bits (77), Expect = 0.32
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+ G+ ++ IHRD++A NIL++ET K+
Sbjct: 111 IAEGMAFIERKNYIHRDLRAANILVSETLCCKI 143
>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine
Kinases, Vascular Endothelial Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor (VEGFR) subfamily;
catalytic (c) domain. The VEGFR subfamily consists of
VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. There are five
VEGF ligands in mammals, which bind, in an overlapping
pattern to the three VEGFRs, which can form homo or
heterodimers. VEGFRs regulate the cardiovascular system.
They are critical for vascular development during
embryogenesis and blood vessel formation in adults. They
induce cellular functions common to other growth factor
receptors such as cell migration, survival, and
proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta
growth factor (PLGF). It regulates monocyte and
macrophage migration, vascular permeability,
haematopoiesis, and the recruitment of haematopietic
progenitor cells from the bone marrow.
Length = 337
Score = 64.9 bits (158), Expect = 4e-11
Identities = 74/262 (28%), Positives = 110/262 (41%), Gaps = 52/262 (19%)
Query: 170 IGHGSFGAVYYARCL-----VSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQL-KHPN 223
+G G+FG V A S VA+K M G +E A ++ E++ L + H N
Sbjct: 15 LGRGAFGKVIQASAFGIEKSASCRTVAVK-MLKEGATASEYKA-LMTELKILIHIGHHLN 72
Query: 224 TIEYRG-CYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGN--RLQQLKC---- 275
+ G C +++EYC G+ S+ + +RE R +++K
Sbjct: 73 VVNLLGACTKPGGPLMVIVEYCKFGNLSNYLRS---KRECFSPYRNKSTRKREMKQKEGK 129
Query: 276 -----------------FTEHFALFNFE-------VHKRPLKEEEIAAICSGVLRGLNYL 311
F E +L + E ++K PL E++ + V RG+ +L
Sbjct: 130 KQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFL 189
Query: 312 HSLGRIHRDVKAGNILLTETGTVKLADFGSAS--IKCPANSFVGTPY----WMAPEVILA 365
S IHRD+ A NILL+E VK+ DFG A K P G WMAPE I
Sbjct: 190 ASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIF- 248
Query: 366 MDEGQYDGKVDVWSLGITCIEL 387
+ Y + DVWS G+ E+
Sbjct: 249 --DKVYTTQSDVWSFGVLLWEI 268
Score = 62.9 bits (153), Expect = 2e-10
Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 41 SDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 100
+ E++K PL E++ + V RG+ +L S IHRD+ A NILL+E VK+ DFG
Sbjct: 160 EEGDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGL 219
Query: 101 AS--IKCPANSFVGTPY----WMAPEVILAMDEGQYDGKVDVWSLGI 141
A K P G WMAPE I + Y + DVWS G+
Sbjct: 220 ARDIYKDPDYVRKGDARLPLKWMAPESIF---DKVYTTQSDVWSFGV 263
Score = 41.4 bits (97), Expect = 0.001
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 626 SDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+ E++K PL E++ + V RG+ +L S IHRD+ A NILL+E VK+
Sbjct: 160 EEGDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKI 214
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 63.8 bits (155), Expect = 4e-11
Identities = 61/231 (26%), Positives = 93/231 (40%), Gaps = 44/231 (19%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYRG 229
IG G FGAV + VA+K + +C L+E + +L H N + G
Sbjct: 14 IGEGEFGAVLQGEYTGQK--VAVKNI-----KCDVTAQAFLEETAVMTKLHHKNLVRLLG 66
Query: 230 CYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEVHK 289
L + ++VME S +++ V + QL F+
Sbjct: 67 VILHN-GLYIVMELM--SKGNLVNFLRTRGRALVS-----VIQLLQFSLD---------- 108
Query: 290 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN 349
V G+ YL S +HRD+ A NIL++E G K++DFG A +
Sbjct: 109 --------------VAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGV 154
Query: 350 SFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPPYFNMN 398
P W APE A+ ++ K DVWS G+ E+ + + PY M+
Sbjct: 155 DNSKLPVKWTAPE---ALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMS 202
Score = 61.5 bits (149), Expect = 3e-10
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRPL-KEEEIAAICSG 62
++++ +L H N + G L + ++VME G+ + + R L ++
Sbjct: 50 TAVMTKLHHKNLVRLLGVILHN-GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLD 108
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPY-WMAPEV 121
V G+ YL S +HRD+ A NIL++E G K++DFG A + P W APE
Sbjct: 109 VAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPE- 167
Query: 122 ILAMDEGQYDGKVDVWSLGI 141
A+ ++ K DVWS G+
Sbjct: 168 --ALKHKKFSSKSDVWSYGV 185
Score = 34.9 bits (80), Expect = 0.12
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 16/77 (20%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLD----TPDEQAGNDSS----------- 692
V G+ YL S +HRD+ A NIL++E G K+ G D+S
Sbjct: 109 VAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEA 168
Query: 693 -KSNSITSEHSVQSVGV 708
K +S+ V S GV
Sbjct: 169 LKHKKFSSKSDVWSYGV 185
>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase A. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase A
(TrkA); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkA is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkA
to its ligand, nerve growth factor (NGF), results in
receptor oligomerization and activation of the catalytic
domain. TrkA is expressed mainly in neural-crest-derived
sensory and sympathetic neurons of the peripheral
nervous system, and in basal forebrain cholinergic
neurons of the central nervous system. It is critical
for neuronal growth, differentiation and survival.
Alternative TrkA splicing has been implicated as a
pivotal regulator of neuroblastoma (NB) behavior. Normal
TrkA expression is associated with better NB prognosis,
while the hypoxia-regulated TrkAIII splice variant
promotes NB pathogenesis and progression. Aberrant TrkA
expression has also been demonstrated in non-neural
tumors including prostate, breast, lung, and pancreatic
cancers.
Length = 280
Score = 64.2 bits (156), Expect = 4e-11
Identities = 64/253 (25%), Positives = 103/253 (40%), Gaps = 38/253 (15%)
Query: 169 EIGHGSFGAVYYARCL-----VSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
E+G G+FG V+ A C + +VA+K + + + D +E L L+H +
Sbjct: 12 ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQ---DFQREAELLTVLQHQH 68
Query: 224 TIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
+ + G +V EY G + + H + + G QL
Sbjct: 69 IVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTL------- 121
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-S 341
++ AI S + G+ YL SL +HRD+ N L+ + VK+ DFG S
Sbjct: 122 ------------GQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMS 169
Query: 342 ASIKCPANSFVG----TPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPPYF 395
I VG P WM PE IL ++ + D+WS G+ E+ K P++
Sbjct: 170 RDIYSTDYYRVGGRTMLPIRWMPPESILYR---KFTTESDIWSFGVVLWEIFTYGKQPWY 226
Query: 396 NMNAMSALYHIAQ 408
++ A+ I Q
Sbjct: 227 QLSNTEAIECITQ 239
Score = 46.5 bits (110), Expect = 3e-05
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 50 PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPAN 108
L ++ AI S + G+ YL SL +HRD+ N L+ + VK+ DFG S I
Sbjct: 118 QLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDY 177
Query: 109 SFVG----TPY-WMAPEVILAMDEGQYDGKVDVWSLGI 141
VG P WM PE IL ++ + D+WS G+
Sbjct: 178 YRVGGRTMLPIRWMPPESILYR---KFTTESDIWSFGV 212
Score = 29.6 bits (66), Expect = 6.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 635 PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
L ++ AI S + G+ YL SL +HRD+ N L+ + VK+
Sbjct: 118 QLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKI 163
>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain
Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Discoidin Domain Receptor
(DDR)-like proteins; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR-like
proteins are members of the DDR subfamily, which are
receptor tyr kinases (RTKs) containing an extracellular
discoidin homology domain, a transmembrane segment, an
extended juxtamembrane region, and an intracellular
catalytic domain. The binding of the ligand, collagen,
to DDRs results in a slow but sustained receptor
activation. DDRs regulate cell adhesion, proliferation,
and extracellular matrix remodeling. They have been
linked to a variety of human cancers including breast,
colon, ovarian, brain, and lung. There is no evidence
showing that DDRs act as transforming oncogenes. They
are more likely to play a role in the regulation of
tumor growth and metastasis.
Length = 295
Score = 64.2 bits (156), Expect = 5e-11
Identities = 64/248 (25%), Positives = 97/248 (39%), Gaps = 59/248 (23%)
Query: 167 LRE-IGHGSFGAVYYARCLVSRE--------------IVAIKKMSYLGKQCAEKWADILK 211
L+E +G G FG V+ E +VA+K + + A D LK
Sbjct: 9 LKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARN--DFLK 66
Query: 212 EIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGN-RL 270
EI+ + +LK+PN I G + D ++ EY M N L
Sbjct: 67 EIKIMSRLKNPNIIRLLGVCVSDDPLCMITEY----------------------MENGDL 104
Query: 271 QQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 330
Q E + F + + + + + G+ YL SL +HRD+ N L+
Sbjct: 105 NQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGN 164
Query: 331 TGTVKLADFGSASIKCPANSFVGTPY-----------WMAPEVILAMDEGQYDGKVDVWS 379
T+K+ADFG + N + G Y WMA E IL G++ DVW+
Sbjct: 165 HYTIKIADFGMSR-----NLYSGDYYRIQGRAVLPIRWMAWESILL---GKFTTASDVWA 216
Query: 380 LGITCIEL 387
G+T E+
Sbjct: 217 FGVTLWEM 224
Score = 57.7 bits (139), Expect = 6e-09
Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 41/185 (22%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYC----LGSASDIIEVHKRPLKEEEIAAI--- 59
++ +LK+PN I G + D ++ EY L E+ I ++
Sbjct: 70 IMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIA 129
Query: 60 -----CSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTP 114
+ G+ YL SL +HRD+ N L+ T+K+ADFG + N + G
Sbjct: 130 NLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSR-----NLYSGDY 184
Query: 115 Y-----------WMAPEVILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFD--KEDPE 161
Y WMA E IL G++ DVW+ G+T + E+F KE P
Sbjct: 185 YRIQGRAVLPIRWMAWESILL---GKFTTASDVWAFGVT--------LWEMFTLCKEQPY 233
Query: 162 KIFED 166
+ D
Sbjct: 234 SLLSD 238
Score = 29.2 bits (65), Expect = 8.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 651 GLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
G+ YL SL +HRD+ N L+ T+K+
Sbjct: 141 GMKYLASLNFVHRDLATRNCLVGNHYTIKI 170
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. In
addition, Csk also shows Src-independent functions. It
is a critical component in G-protein signaling, and
plays a role in cytoskeletal reorganization and cell
migration.
Length = 256
Score = 63.5 bits (154), Expect = 5e-11
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 3 AGSSLLRQLKHPNTIEYRGCYLRDHTA-WLVMEY-CLGSASDIIEVHKRP-LKEEEIAAI 59
A +S++ QL+H N ++ G + + ++V EY GS D + R L + +
Sbjct: 48 AEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF 107
Query: 60 CSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPY-WMA 118
V + YL + +HRD+ A N+L++E K++DFG P W A
Sbjct: 108 SLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTA 167
Query: 119 PEVILAMDEGQYDGKVDVWSLGI 141
PE A+ E ++ K DVWS GI
Sbjct: 168 PE---ALREKKFSTKSDVWSFGI 187
Score = 53.4 bits (128), Expect = 1e-07
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 304 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPY-WMAPEV 362
V + YL + +HRD+ A N+L++E K++DFG P W APE
Sbjct: 111 VCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPE- 169
Query: 363 ILAMDEGQYDGKVDVWSLGITCIEL 387
A+ E ++ K DVWS GI E+
Sbjct: 170 --ALREKKFSTKSDVWSFGILLWEI 192
Score = 30.7 bits (69), Expect = 2.9
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLD----TPDEQAGNDSSK 693
V + YL + +HRD+ A N+L++E K+ T + + D+ K
Sbjct: 111 VCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGK 160
>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 1.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 1 (Ror1); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. Avian Ror1 was found to be
involved in late limb development. Studies in mice
reveal that Ror1 is important in the regulation of
neurite growth in central neurons, as well as in
respiratory development. Loss of Ror1 also enhances the
heart and skeletal abnormalities found in Ror2-deficient
mice.
Length = 283
Score = 63.9 bits (155), Expect = 6e-11
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 31/231 (13%)
Query: 167 LREIGHGSFGAVY----YARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHP 222
+ E+G +FG +Y Y + ++VAIK + + ++W + +E + +L HP
Sbjct: 10 MEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINN--PQQWGEFQQEASLMAELHHP 67
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
N + G ++ ++ EY + D+ E I R H + + C ++
Sbjct: 68 NIVCLLGVVTQEQPVCMLFEYL--NQGDLHEF-LIMRSPHSD--------VGCSSDEDGT 116
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA 342
K L + I + G+ YL S +H+D+ A NIL+ E VK++D G +
Sbjct: 117 V-----KSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLS 171
Query: 343 SIKCPANSFVGTP------YWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
A+ + P WM PE I+ G++ D+WS G+ E+
Sbjct: 172 REIYSADYYRVQPKSLLPIRWMPPEAIMY---GKFSSDSDIWSFGVVLWEI 219
Score = 54.6 bits (131), Expect = 7e-08
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-----------------LGSASDIIEVH 47
+SL+ +L HPN + G ++ ++ EY +G +SD
Sbjct: 58 ASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTV 117
Query: 48 KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPA 107
K L + I + G+ YL S +H+D+ A NIL+ E VK++D G + A
Sbjct: 118 KSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSA 177
Query: 108 NSFVGTP------YWMAPEVILAMDEGQYDGKVDVWSLGI 141
+ + P WM PE I+ G++ D+WS G+
Sbjct: 178 DYYRVQPKSLLPIRWMPPEAIMY---GKFSSDSDIWSFGV 214
>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 7. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK7
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs
to the visual group of GRKs. It is primarily found in
the retina and plays a role in the regulation of opsin
light receptors. GRK7 is located in retinal cone outer
segments and plays an important role in regulating
photoresponse of the cones.
Length = 277
Score = 63.8 bits (155), Expect = 6e-11
Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 43/233 (18%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKM--SYLGKQCAEKWADILKEIRFLRQLKHPNTIEY 227
+G G FG V + + ++ A KK+ L K+ EK A + KEI L ++ P +
Sbjct: 1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEI--LEKVNSPFIVNL 58
Query: 228 RGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEV 287
Y + L + L + D+ ++H+ + V
Sbjct: 59 --AYAFESKTHLCLVMSLMNGGDL--------KYHI---------------------YNV 87
Query: 288 HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCP 347
+R L+ E + + + G+ +LHS+ ++RD+K N+LL + G +L+D G A ++
Sbjct: 88 GERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLA-VELK 146
Query: 348 ANSFV----GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
+ GT +MAPE++ E Y VD +++G + E+ + P+ +
Sbjct: 147 DGKTITQRAGTNGYMAPEILK---EEPYSYPVDWFAMGCSIYEMVAGRTPFKD 196
Score = 55.0 bits (132), Expect = 4e-08
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 43 IIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 102
I V +R L+ E + + + G+ +LHS+ ++RD+K N+LL + G +L+D G A
Sbjct: 84 IYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLA- 142
Query: 103 IKCPANSFV----GTPYWMAPEVILAMDEGQYDGKVDVWSLG-----ITPGSLKDPEIAE 153
++ + GT +MAPE++ E Y VD +++G + G + E
Sbjct: 143 VELKDGKTITQRAGTNGYMAPEILK---EEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKE 199
Query: 154 LFDKED-PEKIFEDLREIGHGSFGA 177
KE+ + ED + H +F
Sbjct: 200 KVAKEELKRRTLEDEVKFEHQNFTE 224
Score = 34.9 bits (80), Expect = 0.11
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 628 IIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
I V +R L+ E + + + G+ +LHS+ ++RD+K N+LL + G +L
Sbjct: 84 IYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRL 136
>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase,
Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Yes (or c-Yes) is a
member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. c-Yes
kinase is the cellular homolog of the oncogenic protein
(v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma
viruses. It displays functional overlap with other Src
subfamily members, particularly Src. It also shows some
unique functions such as binding to occludins,
transmembrane proteins that regulate extracellular
interactions in tight junctions. Yes also associates
with a number of proteins in different cell types that
Src does not interact with, like JAK2 and gp130 in
pre-adipocytes, and Pyk2 in treated pulmonary vein
endothelial cells. Although the biological function of
Yes remains unclear, it appears to have a role in
regulating cell-cell interactions and vesicle
trafficking in polarized cells.
Length = 260
Score = 63.2 bits (153), Expect = 8e-11
Identities = 76/280 (27%), Positives = 120/280 (42%), Gaps = 52/280 (18%)
Query: 165 EDLR---EIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKH 221
E LR ++G G FG V+ + + VAIK + G E + L+E + +++L+H
Sbjct: 6 ESLRLDVKLGQGCFGEVWMGTWNGTTK-VAIKTLK-PGTMMPEAF---LQEAQIMKKLRH 60
Query: 222 PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
LV Y + S I +I EF G G+ L LK
Sbjct: 61 DK---------------LVPLYAVVSEEPI----YIVTEFM--GKGSLLDFLK------- 92
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
E + LK ++ + + + G+ Y+ + IHRD++A NIL+ + K+ADFG
Sbjct: 93 ----EGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGL 148
Query: 342 ASIKCPANSFV---GTPY---WMAPEVILAMDEGQYDGKVDVWSLGITCIELAER-KPPY 394
A + N + G + W APE L G++ K DVWS GI EL + + PY
Sbjct: 149 ARL-IEDNEYTARQGAKFPIKWTAPEAALY---GRFTIKSDVWSFGILLTELVTKGRVPY 204
Query: 395 FNMNAMSALYHIAQN-DTPCLQSSDWSVIKTISSTAERKP 433
M L + + PC Q S+ + + ++ P
Sbjct: 205 PGMVNREVLEQVERGYRMPCPQGCPESLHELMKLCWKKDP 244
Score = 57.4 bits (138), Expect = 7e-09
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDII-EVHKRPLKEEEIAAICSG 62
+ ++++L+H + + + ++V E+ GS D + E + LK ++ + +
Sbjct: 52 AQIMKKLRHDKLVPLYAV-VSEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQ 110
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFV---GTPY---W 116
+ G+ Y+ + IHRD++A NIL+ + K+ADFG A + N + G + W
Sbjct: 111 IADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARL-IEDNEYTARQGAKFPIKW 169
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGI 141
APE L G++ K DVWS GI
Sbjct: 170 TAPEAALY---GRFTIKSDVWSFGI 191
Score = 32.7 bits (74), Expect = 0.61
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 623 GSASDII-EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
GS D + E + LK ++ + + + G+ Y+ + IHRD++A NIL+ + K+
Sbjct: 85 GSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKI 143
>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled
Receptor Kinase 4-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK4-like group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. Members of the
GRK4-like group include GRK4, GRK5, GRK6, and similar
GRKs. GRKs in this group contain an N-terminal RGS
homology (RH) domain and a catalytic domain, but lack a
G protein betagamma-subunit binding domain. They are
localized to the plasma membrane through
post-translational lipid modification or direct binding
to PIP2.
Length = 285
Score = 63.3 bits (154), Expect = 8e-11
Identities = 65/237 (27%), Positives = 98/237 (41%), Gaps = 43/237 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMS--YLGKQCAEKWADILKEIRFLRQLKH 221
F R +G G FG V + + ++ A KK+ + K+ E A L E + L ++
Sbjct: 2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMA--LNEKQILEKVNS 59
Query: 222 PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
+ Y LV+ L + D+ +FH+ MGN F E A
Sbjct: 60 RFVVSLAYAYETKDALCLVLT--LMNGGDL--------KFHIYNMGN-----PGFDEERA 104
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
+F A I G L LH ++RD+K NILL + G ++++D G
Sbjct: 105 VF------------YAAEITCG----LEDLHRERIVYRDLKPENILLDDYGHIRISDLGL 148
Query: 342 ASIKCPANSF----VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
A ++ P VGT +MAPEV+ +Y D W LG E+ E K P+
Sbjct: 149 A-VEIPEGETIRGRVGTVGYMAPEVV---KNERYTFSPDWWGLGCLIYEMIEGKSPF 201
Score = 51.4 bits (123), Expect = 7e-07
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 53 EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSF-- 110
EE + + GL LH ++RD+K NILL + G ++++D G A ++ P
Sbjct: 101 EERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLA-VEIPEGETIR 159
Query: 111 --VGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
VGT +MAPEV+ +Y D W LG
Sbjct: 160 GRVGTVGYMAPEVV---KNERYTFSPDWWGLG 188
Score = 30.2 bits (68), Expect = 4.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 638 EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
EE + + GL LH ++RD+K NILL + G +++
Sbjct: 101 EERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRI 143
>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine
Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine
Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4);
pseudokinase domain. The PTKc (catalytic domain) family,
to which this subfamily belongs, includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CCK4,
also called protein tyrosine kinase 7 (PTK7), is an
orphan receptor tyr kinase (RTK) containing an
extracellular region with seven immunoglobulin domains,
a transmembrane segment, and an intracellular inactive
pseudokinase domain. Studies in mice reveal that CCK4 is
essential for neural development. Mouse embryos
containing a truncated CCK4 die perinatally and display
craniorachischisis, a severe form of neural tube defect.
The mechanism of action of the CCK4 pseudokinase is
still unknown. Other pseudokinases such as HER3 rely on
the activity of partner RTKs.
Length = 275
Score = 62.9 bits (153), Expect = 1e-10
Identities = 63/327 (19%), Positives = 112/327 (34%), Gaps = 79/327 (24%)
Query: 170 IGHGSFGAVYYAR-----CLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
+G G FG V+ A+ +V +K + + + ++ +E+ R+L H N
Sbjct: 13 LGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQ--SEFRRELDMFRKLSHKNV 70
Query: 225 IEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
+ G ++++EY L LK F +
Sbjct: 71 VRLLGLCREAEPHYMILEYT------------------------DLGDLKQFLRATKSKD 106
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI 344
++ PL ++ A+C+ + G+++L + +HRD+ A N L++ VK++ +
Sbjct: 107 EKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKD 166
Query: 345 K-----CPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNA 399
+ + W+APE + E + K DVWS G+ E+ F
Sbjct: 167 VYNSEYYKLRNALIPLRWLAPEAVQ---EDDFSTKSDVWSFGVLMWEV-------FTQGE 216
Query: 400 MSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSD 459
+ +D L + E P S LY +
Sbjct: 217 LP---FYGLSDEEVLNRLQ-------AGKLELPVP---EGCPSRLYKLMT---------- 253
Query: 460 WSDTFAHFVSSCLAKNPADRPSSGRLL 486
C A NP DRPS L+
Sbjct: 254 ----------RCWAVNPKDRPSFSELV 270
Score = 61.3 bits (149), Expect = 4e-10
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYC---------LGSASDIIEVHKRPLKEEEIA 57
+ R+L H N + G ++++EY + S ++ PL ++
Sbjct: 61 MFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKV 120
Query: 58 AICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIK-----CPANSFVG 112
A+C+ + G+++L + +HRD+ A N L++ VK++ + + +
Sbjct: 121 ALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALI 180
Query: 113 TPYWMAPEVILAMDEGQYDGKVDVWSLGIT 142
W+APE + E + K DVWS G+
Sbjct: 181 PLRWLAPEAVQ---EDDFSTKSDVWSFGVL 207
Score = 40.1 bits (94), Expect = 0.003
Identities = 15/65 (23%), Positives = 34/65 (52%)
Query: 619 EYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 678
++ + S ++ PL ++ A+C+ + G+++L + +HRD+ A N L++ V
Sbjct: 97 QFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREV 156
Query: 679 KLDTP 683
K+
Sbjct: 157 KVSLL 161
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family;
HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER3 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER3 binds the neuregulin ligands, NRG1 and
NRG2. HER3 contains an impaired tyr kinase domain and
relies on its heterodimerization partners for activity
following ligand binding. The HER2-HER3 heterodimer
constitutes a high affinity co-receptor capable of
potent mitogenic signaling. HER3 participates in a
signaling pathway involved in the proliferation,
survival, adhesion, and motility of tumor cells.
Length = 279
Score = 63.1 bits (153), Expect = 1e-10
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 21/145 (14%)
Query: 31 LVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 89
LV + LGS D + H+ L + + C + +G+ YL +HR++ A NILL
Sbjct: 85 LVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKS 144
Query: 90 TGTVKLADFGSASIKCPAN-----SFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGITP 143
V++ADFG A + P + S TP WMA E IL G+Y + DVWS G+T
Sbjct: 145 DSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILF---GRYTHQSDVWSYGVTV 201
Query: 144 -----------GSLKDPEIAELFDK 157
++ E+ +L +K
Sbjct: 202 WEMMSYGAEPYAGMRPHEVPDLLEK 226
Score = 60.4 bits (146), Expect = 7e-10
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 10/128 (7%)
Query: 267 GNRLQQLKCFTEHFALFNF-EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGN 325
G LQ + + +L + H+ L + + C + +G+ YL +HR++ A N
Sbjct: 80 GASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARN 139
Query: 326 ILLTETGTVKLADFGSASIKCPAN-----SFVGTPY-WMAPEVILAMDEGQYDGKVDVWS 379
ILL V++ADFG A + P + S TP WMA E IL G+Y + DVWS
Sbjct: 140 ILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILF---GRYTHQSDVWS 196
Query: 380 LGITCIEL 387
G+T E+
Sbjct: 197 YGVTVWEM 204
Score = 36.1 bits (83), Expect = 0.053
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 613 SPQLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
S QLV + LGS D + H+ L + + C + +G+ YL +HR++ A NIL
Sbjct: 82 SLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNIL 141
Query: 672 LTETGTVKL 680
L V++
Sbjct: 142 LKSDSIVQI 150
>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 1. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
1 (DDR1) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR1 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR1 binds to all collagens tested to date (types I-IV).
It is widely expressed in many tissues. It is abundant
in the brain and is also found in keratinocytes, colonic
mucosa epithelium, lung epithelium, thyroid follicles,
and the islets of Langerhans. During embryonic
development, it is found in the developing
neuroectoderm. DDR1 is a key regulator of cell
morphogenesis, differentiation and proliferation. It is
important in the development of the mammary gland, the
vasculator and the kidney. DDR1 is also found in human
leukocytes, where it facilitates cell adhesion,
migration, maturation, and cytokine production.
Length = 304
Score = 63.0 bits (153), Expect = 1e-10
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 39/202 (19%)
Query: 208 DILKEIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGM 266
D LKE++ L +LK PN I G + + ++ EY G + + H ++ +
Sbjct: 65 DFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDK------ 118
Query: 267 GNRLQQLKCFTEHFALFNFEVHKRP-LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGN 325
E+ H P + + + + G+ YL SL +HRD+ N
Sbjct: 119 ----------EENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRN 168
Query: 326 ILLTETGTVKLADFGSASIKCPANSFVGTPY-----------WMAPEVILAMDEGQYDGK 374
L+ E T+K+ADFG + N + G Y WMA E IL G++
Sbjct: 169 CLVGENLTIKIADFGMSR-----NLYAGDYYRIQGRAVLPIRWMAWECILM---GKFTTA 220
Query: 375 VDVWSLGITCIELAE--RKPPY 394
DVW+ G+T E+ ++ PY
Sbjct: 221 SDVWAFGVTLWEILMLCKEQPY 242
Score = 56.9 bits (137), Expect = 1e-08
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 38/166 (22%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEE---------- 55
+L +LK PN I G + + ++ EY G + + H KEE
Sbjct: 72 ILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHC 131
Query: 56 --------IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPA 107
+ + + G+ YL SL +HRD+ N L+ E T+K+ADFG +
Sbjct: 132 LPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSR----- 186
Query: 108 NSFVGTPY-----------WMAPEVILAMDEGQYDGKVDVWSLGIT 142
N + G Y WMA E IL G++ DVW+ G+T
Sbjct: 187 NLYAGDYYRIQGRAVLPIRWMAWECILM---GKFTTASDVWAFGVT 229
Score = 30.7 bits (69), Expect = 2.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 642 AAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
I SG + YL SL +HRD+ N L+ E T+K+
Sbjct: 145 LQIASG----MKYLSSLNFVHRDLATRNCLVGENLTIKI 179
>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 3. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 3 (FGFR3); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR3 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Many FGFR3 splice
variants have been reported with the IIIb and IIIc
isoforms being the predominant forms. FGFR3 IIIc is the
isoform expressed in chondrocytes, the cells affected in
dwarfism, while IIIb is expressed in epithelial cells.
FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and
FGF23. It is a negative regulator of long bone growth.
In the cochlear duct and in the lens, FGFR3 is involved
in differentiation while it appears to have a role in
cell proliferation in epithelial cells. Germline
mutations in FGFR3 are associated with skeletal
disorders including several forms of dwarfism. Some
missense mutations are associated with multiple myeloma
and carcinomas of the bladder and cervix. Overexpression
of FGFR3 is found in thyroid carcinoma.
Length = 334
Score = 63.1 bits (153), Expect = 1e-10
Identities = 83/345 (24%), Positives = 136/345 (39%), Gaps = 75/345 (21%)
Query: 168 REIGHGSFGAVYYARCL-VSRE------IVAIKKMSYLGKQCAEKWADILKEIRFLRQL- 219
+ +G G FG V A + + ++ VA+K + + +D++ E+ ++ +
Sbjct: 18 KPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATD--KDLSDLVSEMEMMKMIG 75
Query: 220 KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
KH N I G +D ++++EY GN + L+
Sbjct: 76 KHKNIINLLGACTQDGPLYVLVEYA--------------------SKGNLREYLRARRPP 115
Query: 280 FALFNFEVHKRP---LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 336
++F+ K P L +++ + V RG+ YL S IHRD+ A N+L+TE +K+
Sbjct: 116 GMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKI 175
Query: 337 ADFGSASIKCPANSFVGTP------YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 390
ADFG A + + T WMAPE A+ + Y + DVWS G+ E+
Sbjct: 176 ADFGLARDVHNIDYYKKTTNGRLPVKWMAPE---ALFDRVYTHQSDVWSFGVLLWEIFTL 232
Query: 391 KP-PY--------FNM-----------NAMSALY-------HIAQNDTPCLQS--SDWSV 421
PY F + N LY H + P + D
Sbjct: 233 GGSPYPGIPVEELFKLLKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDR 292
Query: 422 IKTISSTAERKPPYFNMNAMSALYHIAQNDTPCLQSSDWSDTFAH 466
+ T++ST E Y +++ Y D+P SS FAH
Sbjct: 293 VLTVTSTDE----YLDLSVPFEQYSPGCPDSPSSCSSGDDSVFAH 333
Score = 60.4 bits (146), Expect = 1e-09
Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 39/189 (20%)
Query: 12 KHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRP----------LKEE-----E 55
KH N I G +D ++++EY G+ + + + P L EE +
Sbjct: 76 KHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKD 135
Query: 56 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTP- 114
+ + V RG+ YL S IHRD+ A N+L+TE +K+ADFG A + + T
Sbjct: 136 LVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTN 195
Query: 115 -----YWMAPEVILAMDEGQYDGKVDVWSLGI------TPGSLKDPEIAELFDKEDPEKI 163
WMAPE A+ + Y + DVWS G+ T G P I E++
Sbjct: 196 GRLPVKWMAPE---ALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP-------VEEL 245
Query: 164 FEDLREIGH 172
F+ L+E GH
Sbjct: 246 FKLLKE-GH 253
Score = 34.6 bits (79), Expect = 0.16
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 627 DIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
D ++ + L +++ + V RG+ YL S IHRD+ A N+L+TE +K+
Sbjct: 122 DTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKI 175
>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 3.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR3 (or Flt4) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. VEGFR3
preferentially binds the ligands VEGFC and VEGFD. VEGFR3
is essential for lymphatic endothelial cell (EC)
development and function. It has been shown to regulate
adaptive immunity during corneal transplantation. VEGFR3
is upregulated on blood vascular ECs in pathological
conditions such as vascular tumors and the periphery of
solid tumors. It plays a role in cancer progression and
lymph node metastasis. Missense mutations in the VEGFR3
gene are associated with primary human lymphedema.
Length = 338
Score = 62.7 bits (152), Expect = 2e-10
Identities = 69/262 (26%), Positives = 105/262 (40%), Gaps = 47/262 (17%)
Query: 168 REIGHGSFGAVYYARCL-----VSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQL-KH 221
+ +GHG+FG V A S VA+K M G +E A ++ E++ L + H
Sbjct: 13 KVLGHGAFGKVVEASAFGIDKKSSCNTVAVK-MLKEGATASEHKA-LMSELKILIHIGNH 70
Query: 222 PNTIEYRG-CYLRDHTAWLVMEYC-LGSASDI-------------------IEVHWIERE 260
N + G C + +++E+C G+ S+ + +
Sbjct: 71 LNVVNLLGACTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQ 130
Query: 261 FHVEGMGNRLQQLKCFTEHFALFNFEVH---------KRPLKEEEIAAICSGVLRGLNYL 311
V+ Q F+ + + K PL E++ V RG+ +L
Sbjct: 131 SRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFL 190
Query: 312 HSLGRIHRDVKAGNILLTETGTVKLADFGSAS--IKCPANSFVGTPY----WMAPEVILA 365
S IHRD+ A NILL+E VK+ DFG A K P G+ WMAPE I
Sbjct: 191 ASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIF- 249
Query: 366 MDEGQYDGKVDVWSLGITCIEL 387
+ Y + DVWS G+ E+
Sbjct: 250 --DKVYTTQSDVWSFGVLLWEI 269
Score = 61.9 bits (150), Expect = 4e-10
Identities = 40/100 (40%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 48 KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS--IKC 105
K PL E++ V RG+ +L S IHRD+ A NILL+E VK+ DFG A K
Sbjct: 168 KSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKD 227
Query: 106 PANSFVGTPY----WMAPEVILAMDEGQYDGKVDVWSLGI 141
P G+ WMAPE I + Y + DVWS G+
Sbjct: 228 PDYVRKGSARLPLKWMAPESIF---DKVYTTQSDVWSFGV 264
Score = 40.8 bits (95), Expect = 0.002
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 633 KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
K PL E++ V RG+ +L S IHRD+ A NILL+E VK+
Sbjct: 168 KSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKI 215
>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase,
Abelson kinase. Protein Tyrosine Kinase (PTK) family;
Abelson (Abl) kinase; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Abl (or
c-Abl) is a ubiquitously-expressed cytoplasmic (or
nonreceptor) tyr kinase that contains SH3, SH2, and tyr
kinase domains in its N-terminal region, as well as
nuclear localization motifs, a putative DNA-binding
domain, and F- and G-actin binding domains in its
C-terminal tail. It also contains a short autoinhibitory
cap region in its N-terminus. Abl is normally inactive
and requires phosphorylation and myristoylation for
activation. Abl function depends on its subcellular
localization. In the cytoplasm, Abl plays a role in cell
proliferation and survival. In response to DNA damage or
oxidative stress, Abl is transported to the nucleus
where it induces apoptosis. In chronic myelogenous
leukemia (CML) patients, an aberrant translocation
results in the replacement of the first exon of Abl with
the BCR (breakpoint cluster region) gene. The resulting
BCR-Abl fusion protein is constitutively active and
associates into tetramers, resulting in a hyperactive
kinase sending a continuous signal. This leads to
uncontrolled proliferation, morphological transformation
and anti-apoptotic effects. BCR-Abl is the target of
selective inhibitors, such as imatinib (Gleevec), used
in the treatment of CML. Abl2, also known as ARG
(Abelson-related gene), is thought to play a cooperative
role with Abl in the proper development of the nervous
system. The Tel-ARG fusion protein, resulting from
reciprocal translocation between chromosomes 1 and 12,
is associated with acute myeloid leukemia (AML). The TEL
gene is a frequent fusion partner of other tyr kinase
oncogenes, including Tel/Abl, Tel/PDGFRbeta, and
Tel/Jak2, found in patients with leukemia and
myeloproliferative disorders.
Length = 263
Score = 61.8 bits (150), Expect = 2e-10
Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 55/253 (21%)
Query: 169 EIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEYR 228
++G G +G VY VA+K + K+ + + LKE ++++KHPN ++
Sbjct: 13 KLGGGQYGEVYEGVWKKYSLTVAVKTL----KEDTMEVEEFLKEAAVMKEIKHPNLVQLL 68
Query: 229 GCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEVH 288
G R+ +++ E+ GN L L
Sbjct: 69 GVCTREPPFYIITEFM--------------------TYGNLLDYL--------------- 93
Query: 289 KRPLKEEEIAAI-----CSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
R +E+ A+ + + + YL IHRD+ A N L+ E VK+ADFG +
Sbjct: 94 -RECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSR 152
Query: 344 I----KCPANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK-PPYFNM 397
+ A++ P W APE ++ ++ K DVW+ G+ E+A PY +
Sbjct: 153 LMTGDTYTAHAGAKFPIKWTAPE---SLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI 209
Query: 398 NAMSALYHIAQND 410
+ +S +Y + +
Sbjct: 210 D-LSQVYELLEKG 221
Score = 59.1 bits (143), Expect = 2e-09
Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 18/148 (12%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEY-CLGSASDIIEVHKRPLKEEEIAAI---- 59
+++++++KHPN ++ G R+ +++ E+ G+ D + R +E+ A+
Sbjct: 53 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYL----RECNRQEVNAVVLLY 108
Query: 60 -CSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI----KCPANSFVGTP 114
+ + + YL IHRD+ A N L+ E VK+ADFG + + A++ P
Sbjct: 109 MATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 168
Query: 115 Y-WMAPEVILAMDEGQYDGKVDVWSLGI 141
W APE ++ ++ K DVW+ G+
Sbjct: 169 IKWTAPE---SLAYNKFSIKSDVWAFGV 193
Score = 29.8 bits (67), Expect = 5.8
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 634 RPLKEEEIAAI-----CSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
R +E+ A+ + + + YL IHRD+ A N L+ E VK+
Sbjct: 94 RECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKV 145
>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 1. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 1 (FGFR1); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR1 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Alternative splicing of
FGFR1 transcripts produces a variety of isoforms, which
are differentially expressed in cells. FGFR1 binds the
ligands, FGF1 and FGF2, with high affinity and has also
been reported to bind FGF4, FGF6, and FGF9. FGFR1
signaling is critical in the control of cell migration
during embryo development. It promotes cell
proliferation in fibroblasts. Nuclear FGFR1 plays a role
in the regulation of transcription. Mutations,
insertions or deletions of FGFR1 have been identified in
patients with Kallman's syndrome (KS), an inherited
disorder characterized by hypogonadotropic hypogonadism
and loss of olfaction. Aberrant FGFR1 expression has
been found in some human cancers including 8P11
myeloproliferative syndrome (EMS), breast cancer, and
pancreatic adenocarcinoma.
Length = 307
Score = 62.3 bits (151), Expect = 2e-10
Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 38/235 (16%)
Query: 168 REIGHGSFGAVYYARCL-VSREI------VAIKKMSYLGKQCAEK-WADILKEIRFLRQL 219
+ +G G FG V A + + +E VA+K L EK +D++ E+ ++ +
Sbjct: 24 KPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVK---MLKSDATEKDLSDLISEMEMMKMI 80
Query: 220 -KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
KH N I G +D ++++EY S ++ E R +E N Q
Sbjct: 81 GKHKNIINLLGACTQDGPLYVIVEY--ASKGNLREYLRARRPPGMEYCYNPTQ------- 131
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
V + L +++ + V RG+ YL S IHRD+ A N+L+TE +K+AD
Sbjct: 132 --------VPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIAD 183
Query: 339 FGSASIKCPANSFVGTP------YWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
FG A + + T WMAPE A+ + Y + DVWS G+ E+
Sbjct: 184 FGLARDIHHIDYYKKTTNGRLPVKWMAPE---ALFDRIYTHQSDVWSFGVLLWEI 235
Score = 60.8 bits (147), Expect = 7e-10
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 25/152 (16%)
Query: 12 KHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHKRP---------------LKEEE 55
KH N I G +D ++++EY G+ + + + P L ++
Sbjct: 82 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKD 141
Query: 56 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTP- 114
+ + V RG+ YL S IHRD+ A N+L+TE +K+ADFG A + + T
Sbjct: 142 LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 201
Query: 115 -----YWMAPEVILAMDEGQYDGKVDVWSLGI 141
WMAPE A+ + Y + DVWS G+
Sbjct: 202 GRLPVKWMAPE---ALFDRIYTHQSDVWSFGV 230
Score = 37.7 bits (87), Expect = 0.017
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 618 MEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGT 677
MEYC E L +++ + V RG+ YL S IHRD+ A N+L+TE
Sbjct: 123 MEYCYNPTQVPEEQ----LSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNV 178
Query: 678 VKL 680
+K+
Sbjct: 179 MKI 181
>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Colony-Stimulating Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Colony-Stimulating
Factor-1 Receptor (CSF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CSF-1R,
also called c-Fms, is a member of the Platelet Derived
Growth Factor Receptor (PDGFR) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
CSF-1R to its ligand, CSF-1, leads to receptor
dimerization, trans phosphorylation and activation, and
intracellular signaling. CSF-1R signaling is critical in
the regulation of macrophages and osteoclasts. It leads
to increases in gene transcription and protein
translation, and induces cytoskeletal remodeling. CSF-1R
signaling leads to a variety of cellular responses
including survival, proliferation, and differentiation
of target cells. It plays an important role in innate
immunity, tissue development and function, and the
pathogenesis of some diseases including atherosclerosis
and cancer. CSF-1R signaling is also implicated in
mammary gland development during pregnancy and
lactation. Aberrant CSF-1/CSF-1R expression correlates
with tumor cell invasiveness, poor clinical prognosis,
and bone metastasis in breast cancer. Although the
structure of the human CSF-1R catalytic domain is known,
it is excluded from this specific alignment model
because it contains a deletion in its sequence.
Length = 374
Score = 62.9 bits (153), Expect = 2e-10
Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 290 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPA 348
PL +++ S V +G+++L S IHRDV A N+LLT+ K+ DFG A I +
Sbjct: 207 WPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDS 266
Query: 349 NSFVG----TPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPPYFNMNAMSA 402
N V P WMAPE I + Y + DVWS GI E+ + K PY + S
Sbjct: 267 NYVVKGNARLPVKWMAPESIF---DCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSK 323
Query: 403 LY 404
Y
Sbjct: 324 FY 325
Score = 59.9 bits (145), Expect = 2e-09
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 49 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPA 107
PL +++ S V +G+++L S IHRDV A N+LLT+ K+ DFG A I +
Sbjct: 207 WPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDS 266
Query: 108 NSFVG----TPY-WMAPEVILAMDEGQYDGKVDVWSLGI 141
N V P WMAPE I + Y + DVWS GI
Sbjct: 267 NYVVKGNARLPVKWMAPESIF---DCVYTVQSDVWSYGI 302
Score = 37.1 bits (86), Expect = 0.031
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 634 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
PL +++ S V +G+++L S IHRDV A N+LLT+ K+
Sbjct: 207 WPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKI 253
>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
LATS subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. LATS was originally identified in Drosophila
using a screen for genes whose inactivation led to
overproliferation of cells. In tetrapods, there are two
LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in
mice results in the development of various tumors,
including sarcomas and ovarian cancer. LATS functions as
a tumor suppressor and is implicated in cell cycle
regulation.
Length = 376
Score = 62.9 bits (153), Expect = 3e-10
Identities = 63/278 (22%), Positives = 99/278 (35%), Gaps = 83/278 (29%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
F ++ IG G+FG V R + + + A+K + + A + E L + +
Sbjct: 3 FVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEW 62
Query: 224 TIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
++ + + VM+Y G M + L +L F E A F
Sbjct: 63 VVKLYYSFQDKDNLYFVMDYIPGG-----------------DMMSLLIRLGIFEEDLARF 105
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG--- 340
IA + + +H +G IHRD+K NIL+ G +KL DFG
Sbjct: 106 ------------YIAELTCAI----ESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT 149
Query: 341 --------------------------------SASIK------------CPANSFVGTPY 356
+K C A+S VGTP
Sbjct: 150 GFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPN 209
Query: 357 WMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
++APEV+L Y D WS+G+ E+ +PP+
Sbjct: 210 YIAPEVLLRTG---YTQLCDWWSVGVILYEMLVGQPPF 244
Score = 53.3 bits (128), Expect = 3e-07
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 50/122 (40%)
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFG--------------------------- 99
+ +H +G IHRD+K NIL+ G +KL DFG
Sbjct: 114 IESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEP 173
Query: 100 --------SASIK------------CPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSL 139
+K C A+S VGTP ++APEV+L Y D WS+
Sbjct: 174 SEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTG---YTQLCDWWSV 230
Query: 140 GI 141
G+
Sbjct: 231 GV 232
Score = 35.6 bits (82), Expect = 0.099
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 652 LNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+ +H +G IHRD+K NIL+ G +KL
Sbjct: 114 IESVHKMGFIHRDIKPDNILIDRDGHIKL 142
>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine
Kinases, Class EphB Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
class EphB receptors; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). Class EphB receptors bind to transmembrane
ephrin-B ligands. There are six vertebrate EhpB
receptors (EphB1-6), which display promiscuous
interactions with three ephrin-B ligands. One exception
is EphB2, which also interacts with ephrin A5. EphRs
contain an ephrin-binding domain and two fibronectin
repeats extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion. EphBRs play important roles in synapse
formation and plasticity, spine morphogenesis, axon
guidance, and angiogenesis. In the intestinal
epithelium, EphBRs are Wnt signaling target genes that
control cell compartmentalization. They function as
suppressors of color cancer progression.
Length = 269
Score = 61.4 bits (149), Expect = 3e-10
Identities = 71/258 (27%), Positives = 100/258 (38%), Gaps = 60/258 (23%)
Query: 170 IGHGSFGAVYYARCLV--SREI-VAIK--KMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
IG G FG V R + REI VAIK K Y KQ D L E + Q HPN
Sbjct: 12 IGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQ----RRDFLSEASIMGQFDHPNI 67
Query: 225 IEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
I G + ++ E F E+ AL +
Sbjct: 68 IHLEGVVTKSRPVMIITE---------------------------------FMENGALDS 94
Query: 285 F-EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG--- 340
F + ++ + G+ G+ YL + +HRD+ A NIL+ K++DFG
Sbjct: 95 FLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSR 154
Query: 341 ----SASIKCPANSFVGT-PY-WMAPEVILAMDEGQYDGKVDVWSLGITCIEL---AERK 391
S +S G P W APE A+ ++ DVWS GI E+ ER
Sbjct: 155 FLEDDTSDPTYTSSLGGKIPIRWTAPE---AIAYRKFTSASDVWSYGIVMWEVMSYGER- 210
Query: 392 PPYFNMNAMSALYHIAQN 409
PY++M+ + I Q+
Sbjct: 211 -PYWDMSNQDVINAIEQD 227
Score = 53.3 bits (128), Expect = 1e-07
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 13/147 (8%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASD-IIEVHKRPLKEEEIAAICSGV 63
+S++ Q HPN I G + ++ E+ A D + + ++ + G+
Sbjct: 56 ASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGI 115
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-------SASIKCPANSFVGT-PY 115
G+ YL + +HRD+ A NIL+ K++DFG S +S G P
Sbjct: 116 AAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPI 175
Query: 116 -WMAPEVILAMDEGQYDGKVDVWSLGI 141
W APE A+ ++ DVWS GI
Sbjct: 176 RWTAPE---AIAYRKFTSASDVWSYGI 199
Score = 29.5 bits (66), Expect = 6.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 640 EIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
++ + G+ G+ YL + +HRD+ A NIL+
Sbjct: 107 QLVGMLRGIAAGMKYLSEMNYVHRDLAARNILV 139
>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA2
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion, making it important in neural development and
plasticity, cell morphogenesis, cell-fate determination,
embryonic development, tissue patterning, and
angiogenesis. The EphA2 receptor is overexpressed in
tumor cells and tumor blood vessels in a variety of
cancers including breast, prostate, lung, and colon. As
a result, it is an attractive target for drug design
since its inhibition could affect several aspects of
tumor progression.
Length = 268
Score = 61.1 bits (148), Expect = 4e-10
Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 56/244 (22%)
Query: 170 IGHGSFGAVYYARCLVS--REI-VAIK--KMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
IG G FG V+ + +E+ VAIK K Y KQ D L E + Q H N
Sbjct: 13 IGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQ----RQDFLSEASIMGQFSHHNI 68
Query: 225 IEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFN 284
I G + A ++ EY A D + L+ F+ +
Sbjct: 69 IRLEGVVTKFKPAMIITEYMENGALD--------------------KYLRDHDGEFSSY- 107
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI 344
++ + G+ G+ YL + +HRD+ A NIL+ K++DFG + +
Sbjct: 108 -----------QLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRV 156
Query: 345 --KCPANSFVGT----PY-WMAPEVILAMDEGQYDGKVDVWSLGITCIEL---AERKPPY 394
P ++ + P W APE A+ ++ DVWS GI E+ ER PY
Sbjct: 157 LEDDPEGTYTTSGGKIPIRWTAPE---AIAYRKFTSASDVWSFGIVMWEVMSFGER--PY 211
Query: 395 FNMN 398
++M+
Sbjct: 212 WDMS 215
Score = 57.3 bits (138), Expect = 7e-09
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASD-IIEVHKRPLKEEEIAAICSGV 63
+S++ Q H N I G + A ++ EY A D + H ++ + G+
Sbjct: 57 ASIMGQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGI 116
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI--KCPANSFVGT----PY-W 116
G+ YL + +HRD+ A NIL+ K++DFG + + P ++ + P W
Sbjct: 117 AAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRW 176
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGI 141
APE A+ ++ DVWS GI
Sbjct: 177 TAPE---AIAYRKFTSASDVWSFGI 198
Score = 30.3 bits (68), Expect = 3.2
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 610 SLFSPQLVM-EYCLGSASD-IIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKA 667
+ F P +++ EY A D + H ++ + G+ G+ YL + +HRD+ A
Sbjct: 76 TKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAA 135
Query: 668 GNILLTETGTVKL 680
NIL+ K+
Sbjct: 136 RNILVNSNLECKV 148
>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase,
Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lyn is a member of the
Src subfamily of proteins, which are cytoplasmic (or
non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Lyn is
expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn and
Blk, promotes B cell activation by phosphorylating ITAMs
(immunoreceptor tyr activation motifs) in CD19 and in Ig
components of BCR. It negatively regulates signaling by
its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an important
role in G-CSF receptor signaling by phosphorylating a
variety of adaptor molecules.
Length = 261
Score = 60.4 bits (146), Expect = 6e-10
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 50/256 (19%)
Query: 158 EDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLR 217
E P + + ++++G G FG V+ S + VA+K + G + + L+E ++
Sbjct: 2 EIPRESIKLVKKLGAGQFGEVWMGYYNNSTK-VAVKTLK-PGTMSVQAF---LEEANLMK 56
Query: 218 QLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHWIEREFHVEGMGNRLQQLKCF 276
L+H + ++ +++ EY GS D ++ EG L +L F
Sbjct: 57 TLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSD--------EGGKVLLPKLIDF 108
Query: 277 TEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 336
+ A G+ Y+ IHRD++A N+L++E+ K+
Sbjct: 109 SAQIA------------------------EGMAYIERKNYIHRDLRAANVLVSESLMCKI 144
Query: 337 ADFGSASI----KCPANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIELAER- 390
ADFG A + + A P W APE A++ G + K DVWS GI E+
Sbjct: 145 ADFGLARVIEDNEYTAREGAKFPIKWTAPE---AINFGSFTIKSDVWSFGILLYEIVTYG 201
Query: 391 KPPY---FNMNAMSAL 403
K PY N + MSAL
Sbjct: 202 KIPYPGMSNSDVMSAL 217
Score = 56.6 bits (136), Expect = 1e-08
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHK-RPLKEEEIAAICSG 62
++L++ L+H + ++ +++ EY GS D ++ + + ++ +
Sbjct: 52 ANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQ 111
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI----KCPANSFVGTPY-WM 117
+ G+ Y+ IHRD++A N+L++E+ K+ADFG A + + A P W
Sbjct: 112 IAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWT 171
Query: 118 APEVILAMDEGQYDGKVDVWSLGI 141
APE A++ G + K DVWS GI
Sbjct: 172 APE---AINFGSFTIKSDVWSFGI 192
Score = 29.2 bits (65), Expect = 7.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+ G+ Y+ IHRD++A N+L++E+ K+
Sbjct: 112 IAEGMAYIERKNYIHRDLRAANVLVSESLMCKI 144
>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine
Kinase, Apoptosis-associated tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Aatyk2 is
a member of the Aatyk subfamily of proteins, which are
receptor kinases containing a transmembrane segment and
a long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk2 is also called lemur tyrosine kinase 2
(Lmtk2) or brain-enriched kinase (Brek). It is expressed
at high levels in early postnatal brain, and has been
shown to play a role in nerve growth factor (NGF)
signaling. Studies with knockout mice reveal that Aatyk2
is essential for late stage spermatogenesis. Although it
is classified as a tyr kinase based on sequence
similarity and the phylogenetic tree, Aatyk2 has been
characterized as a serine/threonine kinase.
Length = 268
Score = 60.3 bits (146), Expect = 7e-10
Identities = 65/260 (25%), Positives = 106/260 (40%), Gaps = 60/260 (23%)
Query: 168 REIGHGSFGAVY----YARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
+EIG+G FG V Y V+R +V K + K+ + L++ R L+HPN
Sbjct: 1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKE----QNEFLQQGDPYRILQHPN 56
Query: 224 TIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVH-WIEREFHVEGMGNRLQQLKCFTEHFA 281
++ G + LV EYC LG + W R LQ++ C
Sbjct: 57 ILQCLGQCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRN----SQLLLLQRMAC------ 106
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
EIAA G+ ++H +H D+ N LT TVK+ D+G
Sbjct: 107 --------------EIAA-------GVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGI 145
Query: 342 ASIKCPANSFVGTP-------YWMAPEVI-------LAMDEGQYDGKVDVWSLGITCIEL 387
+ + ++ T W+APE++ + ++ + +VW+LG+T EL
Sbjct: 146 GPSRYKED-YIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPS---NVWALGVTLWEL 201
Query: 388 AER-KPPYFNMNAMSALYHI 406
E PY +++ L H+
Sbjct: 202 FENAAQPYSHLSDREVLNHV 221
Score = 48.3 bits (115), Expect = 7e-06
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 31/183 (16%)
Query: 9 RQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDII---EVHKRPLKEEEIAAICSGVL 64
R L+HPN ++ G + LV EYC LG + + H+R + + + +
Sbjct: 50 RILQHPNILQCLGQCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIA 109
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTP-------YWM 117
G+ ++H +H D+ N LT TVK+ D+G + + ++ T W+
Sbjct: 110 AGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKED-YIETEDDKCVPLRWL 168
Query: 118 APEVI-------LAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDK-EDPEKIFEDLRE 169
APE++ + ++ + +VW+LG+T + ELF+ P D
Sbjct: 169 APELVGEFHGGLITAEQTKPS---NVWALGVT--------LWELFENAAQPYSHLSDREV 217
Query: 170 IGH 172
+ H
Sbjct: 218 LNH 220
>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase,
Src. Protein Tyrosine Kinase (PTK) family; Src kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Src (or c-Src) is a
cytoplasmic (or non-receptor) tyr kinase, containing an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region with a conserved tyr.
It is activated by autophosphorylation at the tyr kinase
domain, and is negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
c-Src is the vertebrate homolog of the oncogenic protein
(v-Src) from Rous sarcoma virus. Together with other Src
subfamily proteins, it is involved in signaling pathways
that regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Src also play a role in regulating cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Elevated levels of Src kinase activity
have been reported in a variety of human cancers.
Several inhibitors of Src have been developed as
anti-cancer drugs. Src is also implicated in acute
inflammatory responses and osteoclast function.
Length = 262
Score = 60.1 bits (145), Expect = 7e-10
Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 51/243 (20%)
Query: 165 EDLR---EIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKH 221
E LR ++G G FG V+ + VAIK + G E + L+E + +++L+H
Sbjct: 6 ESLRLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLK-PGTMSPEAF---LQEAQVMKKLRH 60
Query: 222 PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
LV Y + S I +I E+ +G + L LK +
Sbjct: 61 EK---------------LVQLYAVVSEEPI----YIVTEYMSKG--SLLDFLKGEMGKY- 98
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
L+ ++ + + + G+ Y+ + +HRD++A NIL+ E K+ADFG
Sbjct: 99 ----------LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGL 148
Query: 342 ASIKCPANSFV---GTPY---WMAPEVILAMDEGQYDGKVDVWSLGITCIELAER-KPPY 394
A + N + G + W APE L G++ K DVWS GI EL + + PY
Sbjct: 149 ARL-IEDNEYTARQGAKFPIKWTAPEAALY---GRFTIKSDVWSFGILLTELTTKGRVPY 204
Query: 395 FNM 397
M
Sbjct: 205 PGM 207
Score = 55.8 bits (134), Expect = 2e-08
Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIE-VHKRPLKEEEIAAICSG 62
+ ++++L+H ++ + + ++V EY GS D ++ + L+ ++ + +
Sbjct: 52 AQVMKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQ 110
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFV---GTPY---W 116
+ G+ Y+ + +HRD++A NIL+ E K+ADFG A + N + G + W
Sbjct: 111 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARL-IEDNEYTARQGAKFPIKW 169
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGI 141
APE L G++ K DVWS GI
Sbjct: 170 TAPEAALY---GRFTIKSDVWSFGI 191
Score = 30.4 bits (68), Expect = 3.1
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 636 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
L+ ++ + + + G+ Y+ + +HRD++A NIL+ E K+
Sbjct: 99 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKV 143
>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR2 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. In
addition, NDR2 plays a role in regulating neuronal
growth and differentiation, as well as in facilitating
neurite outgrowth. It is also implicated in fear
conditioning as it contributes to the coupling of
neuronal morphological changes with fear-memory
consolidation. NDR2 is also referred to as STK38-like.
Length = 360
Score = 61.2 bits (148), Expect = 8e-10
Identities = 69/271 (25%), Positives = 104/271 (38%), Gaps = 77/271 (28%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
FE L+ IG G+FG V R + ++ I M L K AD+L++ Q+ H
Sbjct: 3 FESLKVIGRGAFGEV---RLVQKKDTGHIYAMKILRK------ADMLEK----EQVAHIR 49
Query: 224 TIEYRGCYLRDHTAWLV-MEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
R + AW+V M Y ++ ++ EF G +
Sbjct: 50 A--ERDILVEADGAWVVKMFYSFQDKRNL----YLIMEFLPGG---------------DM 88
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA 342
+ K L EE + + ++ +H LG IHRD+K N+LL G VKL+DFG
Sbjct: 89 MTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLC 148
Query: 343 S--------------IKCPANSF-------------------------VGTPYWMAPEVI 363
+ P + F VGTP ++APEV
Sbjct: 149 TGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVF 208
Query: 364 LAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
+ + Y+ D WSLG+ E+ PP+
Sbjct: 209 M---QTGYNKLCDWWSLGVIMYEMLIGYPPF 236
Score = 59.3 bits (143), Expect = 3e-09
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 42/151 (27%)
Query: 30 WLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 89
+L+ME+ G + + K L EE + + ++ +H LG IHRD+K N+LL
Sbjct: 77 YLIMEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDA 136
Query: 90 TGTVKLADFGSAS--------------IKCPANSF------------------------- 110
G VKL+DFG + P + F
Sbjct: 137 KGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYST 196
Query: 111 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
VGTP ++APEV + + Y+ D WSLG+
Sbjct: 197 VGTPDYIAPEVFM---QTGYNKLCDWWSLGV 224
Score = 45.4 bits (107), Expect = 8e-05
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
L+ME+ G + + K L EE + + ++ +H LG IHRD+K N+LL
Sbjct: 78 LIMEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAK 137
Query: 676 GTVKL 680
G VKL
Sbjct: 138 GHVKL 142
>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine
Kinase, Tie2. Protein Tyrosine Kinase (PTK) family;
Tie2; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie2 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie2 is expressed
mainly in endothelial cells and hematopoietic stem
cells. It is also found in a subset of tumor-associated
monocytes and eosinophils. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2. The binding of Ang-1
to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. Tie2 signaling plays key regulatory roles in
vascular integrity and quiescence, and in inflammation.
Length = 303
Score = 60.4 bits (146), Expect = 1e-09
Identities = 76/303 (25%), Positives = 122/303 (40%), Gaps = 53/303 (17%)
Query: 164 FEDLREIGHGSFGAVYYARCLVS--REIVAIKKMSYLGKQCAEKWADILKEIRFLRQL-K 220
F+D+ IG G+FG V AR R AIK+M + + D E+ L +L
Sbjct: 11 FQDV--IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK--DDHRDFAGELEVLCKLGH 66
Query: 221 HPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHF 280
HPN I G +H +L + ++++ R + F
Sbjct: 67 HPNIINLLGAC--EHRGYLYLAIEYAPHGNLLDFLRKSRVLETD-------------PAF 111
Query: 281 ALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
A+ N L +++ + V RG++YL IHRD+ A NIL+ E K+ADFG
Sbjct: 112 AIANSTAST--LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFG 169
Query: 341 -SASIKCPANSFVGT-PY-WMAPEVILAMDEGQYDGKVDVWSLGI--------------- 382
S + +G P WMA E +++ Y DVWS G+
Sbjct: 170 LSRGQEVYVKKTMGRLPVRWMAIE---SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG 226
Query: 383 -TCIELAERKPPYFN----MNAMSALYHIAQN---DTPCLQSSDWSVIKTISSTAERKPP 434
TC EL E+ P + +N +Y + + + P + S ++ +++ E +
Sbjct: 227 MTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT 286
Query: 435 YFN 437
Y N
Sbjct: 287 YVN 289
Score = 49.6 bits (118), Expect = 3e-06
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 51 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPANS 109
L +++ + V RG++YL IHRD+ A NIL+ E K+ADFG S +
Sbjct: 121 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK 180
Query: 110 FVGT-PY-WMAPEVILAMDEGQYDGKVDVWSLGI 141
+G P WMA E +++ Y DVWS G+
Sbjct: 181 TMGRLPVRWMAIE---SLNYSVYTTNSDVWSYGV 211
Score = 34.2 bits (78), Expect = 0.20
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 636 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
L +++ + V RG++YL IHRD+ A NIL+ E K+
Sbjct: 121 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKI 165
>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein
Serine/Threonine Kinase, beta-adrenergic receptor
kinase. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily,
beta-adrenergic receptor kinase (beta-ARK) group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. The beta-ARK
group is composed of GRK2, GRK3, and similar proteins.
GRK2 and GRK3 are both widely expressed in many tissues,
although GRK2 is present at higher levels. They contain
an N-terminal RGS homology (RH) domain, a central
catalytic domain, and C-terminal pleckstrin homology
(PH) domain that mediates PIP2 and G protein
betagamma-subunit translocation to the membrane. GRK2
(also called beta-ARK or beta-ARK1) is important in
regulating several cardiac receptor responses. It plays
a role in cardiac development and in hypertension.
Deletion of GRK2 in mice results in embryonic lethality,
caused by hypoplasia of the ventricular myocardium. GRK2
also plays important roles in the liver (as a regulator
of portal blood pressure), in immune cells, and in the
nervous system. Altered GRK2 expression has been
reported in several disorders including major
depression, schizophrenia, bipolar disorder, and
Parkinsonism.
Length = 278
Score = 59.9 bits (145), Expect = 1e-09
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 294 EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SIKCPANS 350
E E+ + ++ GL ++H+ ++RD+K NILL E G V+++D G A S K P S
Sbjct: 96 EAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 155
Query: 351 FVGTPYWMAPEVILAMDEG-QYDGKVDVWSLGITCIELAERKPPY 394
VGT +MAPEV + +G YD D +SLG +L P+
Sbjct: 156 -VGTHGYMAPEV---LQKGVAYDSSADWFSLGCMLFKLLRGHSPF 196
Score = 58.8 bits (142), Expect = 2e-09
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Query: 53 EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SIKCPANS 109
E E+ + ++ GL ++H+ ++RD+K NILL E G V+++D G A S K P S
Sbjct: 96 EAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 155
Query: 110 FVGTPYWMAPEVILAMDEG-QYDGKVDVWSLG 140
VGT +MAPEV + +G YD D +SLG
Sbjct: 156 -VGTHGYMAPEV---LQKGVAYDSSADWFSLG 183
Score = 36.5 bits (84), Expect = 0.041
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 638 EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
E E+ + ++ GL ++H+ ++RD+K NILL E G V++
Sbjct: 96 EAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRI 138
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 61.1 bits (148), Expect = 1e-09
Identities = 61/219 (27%), Positives = 93/219 (42%), Gaps = 42/219 (19%)
Query: 290 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN 349
RPL ++ A+ +L ++Y+H G IHRD+K N+L+ + L DFG+A C A
Sbjct: 255 RPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAA---CFAR 311
Query: 350 SFVGTPYWM---------APEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAM 400
TP+ APEV LA D Y VD+WS G+ E A
Sbjct: 312 GSWSTPFHYGIAGTVDTNAPEV-LAGDP--YTPSVDIWSAGLVIFEAAVHT--------- 359
Query: 401 SALYHIAQNDT--PCLQSSDWSVIKTISSTAERKPPYFNMNAMSAL-----YHIAQNDTP 453
++L+ ++ D P D +++ I A+ F +A S L + A+N P
Sbjct: 360 ASLFSASRGDERRPY----DAQILRIIRQ-AQVHVDEFPQHAGSRLVSQYRHRAARNRRP 414
Query: 454 CLQSSDWSDTFA------HFVSSCLAKNPADRPSSGRLL 486
W+ + + V L + A RPS+ LL
Sbjct: 415 AYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELL 453
Score = 58.0 bits (140), Expect = 1e-08
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 15/144 (10%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
LLR+L HP + + LV+ + RPL ++ A+ +L
Sbjct: 213 LLRRLSHPAVLALLDVRVVGGLTCLVLPKYRSDLYTYLGARLRPLGLAQVTAVARQLLSA 272
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPYWM--------- 117
++Y+H G IHRD+K N+L+ + L DFG+A C A TP+
Sbjct: 273 IDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAA---CFARGSWSTPFHYGIAGTVDTN 329
Query: 118 APEVILAMDEGQYDGKVDVWSLGI 141
APEV LA D Y VD+WS G+
Sbjct: 330 APEV-LAGDP--YTPSVDIWSAGL 350
Score = 39.1 bits (91), Expect = 0.009
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 634 RPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
RPL ++ A+ +L ++Y+H G IHRD+K N+L+
Sbjct: 255 RPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLV 293
>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 2.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR2 (or Flk1) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of VEGFRs to their ligands, the VEGFs, leads to
receptor dimerization, activation, and intracellular
signaling. The carboxyl terminus of VEGFR2 plays an
important role in its autophosphorylation and
activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD
and VEGFE. VEGFR2 signaling is implicated in all aspects
of normal and pathological vascular endothelial cell
biology. It induces a variety of cellular effects
including migration, survival, and proliferation. It is
critical in regulating embryonic vascular development
and angiogenesis. VEGFR2 is the major signal transducer
in pathological angiogenesis including cancer and
diabetic retinopathy, and is a target for inhibition in
cancer therapy.
Length = 343
Score = 60.0 bits (145), Expect = 1e-09
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS-- 343
+++K+ L E++ V +G+ +L S IHRD+ A NILL+E VK+ DFG A
Sbjct: 170 DLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDI 229
Query: 344 IKCPANSFVGTPY----WMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
K P G WMAPE I + Y + DVWS G+ E+
Sbjct: 230 YKDPDYVRKGDARLPLKWMAPETIF---DRVYTIQSDVWSFGVLLWEI 274
Score = 59.7 bits (144), Expect = 2e-09
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 45 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS-- 102
+++K+ L E++ V +G+ +L S IHRD+ A NILL+E VK+ DFG A
Sbjct: 170 DLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDI 229
Query: 103 IKCPANSFVGTPY----WMAPEVILAMDEGQYDGKVDVWSLGI 141
K P G WMAPE I + Y + DVWS G+
Sbjct: 230 YKDPDYVRKGDARLPLKWMAPETIF---DRVYTIQSDVWSFGV 269
Score = 40.0 bits (93), Expect = 0.004
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 630 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+++K+ L E++ V +G+ +L S IHRD+ A NILL+E VK+
Sbjct: 170 DLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKI 220
>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase B. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase B
(TrkB); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkB is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkB
to its ligands, brain-derived neurotrophic factor (BDNF)
or neurotrophin 4 (NT4), results in receptor
oligomerization and activation of the catalytic domain.
TrkB is broadly expressed in the nervous system and in
some non-neural tissues. It plays important roles in
cell proliferation, differentiation, and survival.
BDNF/Trk signaling plays a key role in regulating
activity-dependent synaptic plasticity. TrkB also
contributes to protection against gp120-induced neuronal
cell death. TrkB overexpression is associated with poor
prognosis in neuroblastoma (NB) and other human cancers.
It acts as a suppressor of anoikis (detachment-induced
apoptosis) and contributes to tumor metastasis.
Length = 288
Score = 59.3 bits (143), Expect = 2e-09
Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 40/254 (15%)
Query: 168 REIGHGSFGAVYYARCL-----VSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHP 222
RE+G G+FG V+ A C + +VA+K + + D +E L L+H
Sbjct: 11 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARK---DFHREAELLTNLQHE 67
Query: 223 NTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
+ +++ G + +V EY G + + H + EG E
Sbjct: 68 HIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRP--------AE--- 116
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
L + ++ I + G+ YL S +HRD+ N L+ E VK+ DFG
Sbjct: 117 ----------LTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGM 166
Query: 342 ASIKCPANSF-VGTPY-----WMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPPY 394
+ + + VG WM PE I+ ++ + DVWSLG+ E+ K P+
Sbjct: 167 SRDVYSTDYYRVGGHTMLPIRWMPPESIMYR---KFTTESDVWSLGVVLWEIFTYGKQPW 223
Query: 395 FNMNAMSALYHIAQ 408
+ ++ + I Q
Sbjct: 224 YQLSNNEVIECITQ 237
Score = 46.6 bits (110), Expect = 3e-05
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 22/156 (14%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVH------------KRPL 51
+ LL L+H + +++ G + +V EY G + + H L
Sbjct: 58 AELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAEL 117
Query: 52 KEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSF- 110
+ ++ I + G+ YL S +HRD+ N L+ E VK+ DFG + + +
Sbjct: 118 TQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYR 177
Query: 111 VGTPY-----WMAPEVILAMDEGQYDGKVDVWSLGI 141
VG WM PE I+ ++ + DVWSLG+
Sbjct: 178 VGGHTMLPIRWMPPESIMYR---KFTTESDVWSLGV 210
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor
(SCF), leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. Kit signaling is
involved in major cellular functions including cell
survival, proliferation, differentiation, adhesion, and
chemotaxis. Mutations in Kit, which result in
constitutive ligand-independent activation, are found in
human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 60.3 bits (146), Expect = 2e-09
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 292 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANS 350
L E++ + V +G+++L S IHRD+ A NILLT K+ DFG A I+ +N
Sbjct: 211 LDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNY 270
Query: 351 FVG----TPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPPYFNMNAMSALY 404
V P WMAPE I Y + DVWS GI E+ + PY M S Y
Sbjct: 271 VVKGNARLPVKWMAPESIF---NCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFY 327
Score = 59.5 bits (144), Expect = 3e-09
Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 39 SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 98
S+I+E + L E++ + V +G+++L S IHRD+ A NILLT K+ DF
Sbjct: 199 VTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDF 258
Query: 99 GSA-SIKCPANSFVG----TPY-WMAPEVILAMDEGQYDGKVDVWSLGI 141
G A I+ +N V P WMAPE I Y + DVWS GI
Sbjct: 259 GLARDIRNDSNYVVKGNARLPVKWMAPESIF---NCVYTFESDVWSYGI 304
Score = 35.3 bits (81), Expect = 0.11
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 624 SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
S+I+E + L E++ + V +G+++L S IHRD+ A NILLT K+
Sbjct: 199 VTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKI 255
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase
(PTK) family; Hematopoietic cell kinase (Hck); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Hck is a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Hck is present in myeloid and lymphoid
cells that play a role in the development of cancer. It
may be important in the oncogenic signaling of the
protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic
precursors, suggesting a possible role in the
development of acute myeloid leukemia (AML). In
addition, Hck is essential in regulating the
degranulation of polymorphonuclear leukocytes (PMNs).
Genetic polymorphisms affect the expression level of
Hck, which affects PMN mediator release and influences
the development of chronic obstructive pulmonary disease
(COPD).
Length = 260
Score = 58.5 bits (141), Expect = 2e-09
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 276 FTEHFALFNF----EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 331
F +L +F E K+PL + + + + G+ ++ IHRD++A NIL++ +
Sbjct: 81 FMAKGSLLDFLKSDEGSKQPLPK--LIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSAS 138
Query: 332 GTVKLADFGSASIKCPANSFV---GTPY---WMAPEVILAMDEGQYDGKVDVWSLGITCI 385
K+ADFG A + N + G + W APE A++ G + K DVWS GI +
Sbjct: 139 LVCKIADFGLARV-IEDNEYTAREGAKFPIKWTAPE---AINFGSFTIKSDVWSFGILLM 194
Query: 386 ELAER-KPPYFNMN 398
E+ + PY M+
Sbjct: 195 EIVTYGRIPYPGMS 208
Score = 56.6 bits (136), Expect = 1e-08
Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDII---EVHKRPLKEEEIAAIC 60
+++++ L+H ++ ++ +++ E+ GS D + E K+PL + +
Sbjct: 52 ANVMKTLQHDKLVKLHAVVTKE-PIYIITEFMAKGSLLDFLKSDEGSKQPLPK--LIDFS 108
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFV---GTPY-- 115
+ + G+ ++ IHRD++A NIL++ + K+ADFG A + N + G +
Sbjct: 109 AQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARV-IEDNEYTAREGAKFPI 167
Query: 116 -WMAPEVILAMDEGQYDGKVDVWSLGI 141
W APE A++ G + K DVWS GI
Sbjct: 168 KWTAPE---AINFGSFTIKSDVWSFGI 191
>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase C. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase C
(TrkC); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkC is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkC
to its ligand, neurotrophin 3 (NT3), results in receptor
oligomerization and activation of the catalytic domain.
TrkC is broadly expressed in the nervous system and in
some non-neural tissues including the developing heart.
NT3/TrkC signaling plays an important role in the
innervation of the cardiac conducting system and the
development of smooth muscle cells. Mice deficient with
NT3 and TrkC have multiple heart defects. NT3/TrkC
signaling is also critical for the development and
maintenance of enteric neurons that are important for
the control of gut peristalsis.
Length = 291
Score = 58.1 bits (140), Expect = 4e-09
Identities = 65/254 (25%), Positives = 102/254 (40%), Gaps = 37/254 (14%)
Query: 168 REIGHGSFGAVYYARCL-----VSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHP 222
RE+G G+FG V+ A C + +VA+K L D +E L L+H
Sbjct: 11 RELGEGAFGKVFLAECYNLSPTKDKMLVAVKA---LKDPTLAARKDFQREAELLTNLQHE 67
Query: 223 NTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
+ +++ G +V EY G + + H + V+G Q + E
Sbjct: 68 HIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDG-----QPRQAKGE--- 119
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG- 340
L ++ I S + G+ YL S +HRD+ N L+ VK+ DFG
Sbjct: 120 ----------LGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGM 169
Query: 341 SASIKCPANSFVG----TPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPPY 394
S + VG P WM PE I+ ++ + DVWS G+ E+ K P+
Sbjct: 170 SRDVYSTDYYRVGGHTMLPIRWMPPESIMYR---KFTTESDVWSFGVILWEIFTYGKQPW 226
Query: 395 FNMNAMSALYHIAQ 408
F ++ + I Q
Sbjct: 227 FQLSNTEVIECITQ 240
Score = 42.3 bits (99), Expect = 6e-04
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 25/159 (15%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVHK---------RPLKEE 54
+ LL L+H + +++ G +V EY G + + H +P + +
Sbjct: 58 AELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAK 117
Query: 55 ------EIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPA 107
++ I S + G+ YL S +HRD+ N L+ VK+ DFG S +
Sbjct: 118 GELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTD 177
Query: 108 NSFVG----TPY-WMAPEVILAMDEGQYDGKVDVWSLGI 141
VG P WM PE I+ ++ + DVWS G+
Sbjct: 178 YYRVGGHTMLPIRWMPPESIMYR---KFTTESDVWSFGV 213
>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR1 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. NDR1 is
highly expressed in thymus, muscle, lung and spleen. It
is not an essential protein because mice deficient of
NDR1 remain viable and fertile. However, these mice
develop T-cell lymphomas and appear to be hypersenstive
to carcinogenic treatment. NDR1 appears to act as a
tumor suppressor. NDR1 is also called STK38.
Length = 363
Score = 58.5 bits (141), Expect = 6e-09
Identities = 71/271 (26%), Positives = 109/271 (40%), Gaps = 77/271 (28%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPN 223
FE L+ IG G+FG V R + ++ + M L K AD+L++ Q+ H
Sbjct: 3 FESLKVIGRGAFGEV---RLVQKKDTGHVYAMKILRK------ADMLEK----EQVGHIR 49
Query: 224 TIEYRGCYLRDHTAWLV-MEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
R + + W+V M Y S D + ++ I EF G +
Sbjct: 50 A--ERDILVEADSLWVVKMFY---SFQDKLNLYLI-MEFLPGG---------------DM 88
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-- 340
+ K L EEE + + ++ +H LG IHRD+K N+LL G VKL+DFG
Sbjct: 89 MTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLC 148
Query: 341 -------------SASIKCPAN------------------------SFVGTPYWMAPEVI 363
+ + P++ S VGTP ++APEV
Sbjct: 149 TGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVF 208
Query: 364 LAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
+ + Y+ D WSLG+ E+ PP+
Sbjct: 209 M---QTGYNKLCDWWSLGVIMYEMLIGYPPF 236
Score = 57.8 bits (139), Expect = 1e-08
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 42/151 (27%)
Query: 30 WLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 89
+L+ME+ G + + K L EEE + + ++ +H LG IHRD+K N+LL
Sbjct: 77 YLIMEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDS 136
Query: 90 TGTVKLADFG---------------SASIKCPAN------------------------SF 110
G VKL+DFG + + P++ S
Sbjct: 137 KGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFST 196
Query: 111 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
VGTP ++APEV + + Y+ D WSLG+
Sbjct: 197 VGTPDYIAPEVFM---QTGYNKLCDWWSLGV 224
Score = 43.9 bits (103), Expect = 2e-04
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
L+ME+ G + + K L EEE + + ++ +H LG IHRD+K N+LL
Sbjct: 78 LIMEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSK 137
Query: 676 GTVKL 680
G VKL
Sbjct: 138 GHVKL 142
>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase,
Axl. Protein Tyrosine Kinase (PTK) family; Axl;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl is a member of the
Axl subfamily, which is composed of receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with two immunoglobulin-like domains followed by two
fibronectin type III repeats, a transmembrane segment,
and an intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl is widely expressed in a
variety of organs and cells including epithelial,
mesenchymal, hematopoietic, as well as non-transformed
cells. Axl signaling is important in many cellular
functions such as survival, anti-apoptosis,
proliferation, migration, and adhesion. Axl was
originally isolated from patients with chronic
myelogenous leukemia and a chronic myeloproliferative
disorder. Axl is overexpressed in many human cancers
including colon, squamous cell, thyroid, breast, and
lung carcinomas.
Length = 272
Score = 57.7 bits (139), Expect = 6e-09
Identities = 81/336 (24%), Positives = 121/336 (36%), Gaps = 102/336 (30%)
Query: 168 REIGHGSFGAVYYARCLVSREI--VAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTI 225
+ +G G FG+V + I VA+K M + + D L E +++ HPN +
Sbjct: 5 KTLGEGEFGSVMEGQLNQDDSILKVAVKTMK-IAICTRSEMEDFLSEAVCMKEFDHPNVM 63
Query: 226 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
G CL + EG + + L F +H L +F
Sbjct: 64 RLIGV-------------CLQTVES-------------EGYPSPVVILP-FMKHGDLHSF 96
Query: 286 EVHKR----P--LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
++ R P L + + + + G+ YL S IHRD+ A N +L E V +ADF
Sbjct: 97 LLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADF 156
Query: 340 G-SASI------------KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIE 386
G S I K P W+A E ++ + Y K DVWS G+T E
Sbjct: 157 GLSKKIYNGDYYRQGRIAKMPVK-------WIAIE---SLADRVYTTKSDVWSFGVTMWE 206
Query: 387 LAER-KPPYFNMNAMSALYHIAQNDTPCLQSSDWSVIKTISSTAERKPPYFNMNAMSALY 445
+A R + PY P +++S+ +Y
Sbjct: 207 IATRGQTPY-----------------PGVENSE-------------------------IY 224
Query: 446 HIAQNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPS 481
+ Q D D +SSC NP DRPS
Sbjct: 225 DYLRQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPS 260
Score = 45.8 bits (108), Expect = 4e-05
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 51 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASI------ 103
L + + + + G+ YL S IHRD+ A N +L E V +ADFG S I
Sbjct: 109 LPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYY 168
Query: 104 ------KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 142
K P W+A E ++ + Y K DVWS G+T
Sbjct: 169 RQGRIAKMPVK-------WIAIE---SLADRVYTTKSDVWSFGVT 203
Score = 29.6 bits (66), Expect = 6.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 636 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV 678
L + + + + G+ YL S IHRD+ A N +L E V
Sbjct: 109 LPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNV 151
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 57.6 bits (139), Expect = 6e-09
Identities = 66/277 (23%), Positives = 102/277 (36%), Gaps = 83/277 (29%)
Query: 158 EDPEKIFEDLREIGHGSFGAVYYARC----------------LVSREIVAIKKMSYLGKQ 201
E P K ++G G FG V+ +VA+K + ++
Sbjct: 1 EFPRKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKML----RE 56
Query: 202 CAEKWA--DILKEIRFLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIER 259
A K A D LKEI+ + +LK PN I + ++ EY
Sbjct: 57 DANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEY---------------- 100
Query: 260 EFHVEGMGN-RLQQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLR--------GLNY 310
M N L Q E + ++ ++ I L G+ Y
Sbjct: 101 ------MENGDLNQFLSRHEP---------QEAAEKADVVTISYSTLIFMATQIASGMKY 145
Query: 311 LHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPY-----------WMA 359
L SL +HRD+ N L+ + T+K+ADFG + N + G Y WM+
Sbjct: 146 LSSLNFVHRDLATRNCLVGKNYTIKIADFGMSR-----NLYSGDYYRIQGRAVLPIRWMS 200
Query: 360 PEVILAMDEGQYDGKVDVWSLGITCIELAE--RKPPY 394
E IL G++ DVW+ G+T E+ ++ PY
Sbjct: 201 WESILL---GKFTTASDVWAFGVTLWEILTLCKEQPY 234
Score = 53.0 bits (127), Expect = 2e-07
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 30/158 (18%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCL-GSASDIIEVH--KRPLKEEEIAAICSGV 63
++ +LK PN I + ++ EY G + + H + ++ ++ I
Sbjct: 72 IMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYST 131
Query: 64 LR--------GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPY 115
L G+ YL SL +HRD+ N L+ + T+K+ADFG + N + G Y
Sbjct: 132 LIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSR-----NLYSGDYY 186
Query: 116 -----------WMAPEVILAMDEGQYDGKVDVWSLGIT 142
WM+ E IL G++ DVW+ G+T
Sbjct: 187 RIQGRAVLPIRWMSWESILL---GKFTTASDVWAFGVT 221
Score = 29.1 bits (65), Expect = 10.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 651 GLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
G+ YL SL +HRD+ N L+ + T+K+
Sbjct: 142 GMKYLSSLNFVHRDLATRNCLVGKNYTIKI 171
>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine
Kinase, Epidermal Growth Factor Receptor. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EGFR
(HER1, ErbB1) is a member of the EGFR (HER, ErbB)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular EGF-related
ligand-binding region, a transmembrane helix, and a
cytoplasmic region with a tyr kinase domain and a
regulatory C-terminal tail. Unlike other tyr kinases,
phosphorylation of the activation loop of EGFR proteins
is not critical to their activation. Instead, they are
activated by ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands for EGFR include EGF, heparin binding
EGF-like growth factor (HBEGF), epiregulin,
amphiregulin, TGFalpha, and betacellulin. Upon ligand
binding, EGFR can form homo- or heterodimers with other
EGFR subfamily members. The EGFR signaling pathway is
one of the most important pathways regulating cell
proliferation, differentiation, survival, and growth.
Overexpression and mutation in the kinase domain of EGFR
have been implicated in the development and progression
of a variety of cancers. A number of monoclonal
antibodies and small molecule inhibitors have been
developed that target EGFR, including the antibodies
Cetuximab and Panitumumab, which are used in combination
with other therapies for the treatment of colorectal
cancer and non-small cell lung carcinoma (NSCLC). The
small molecule inhibitors Gefitinib (Iressa) and
Erlotinib (Tarceva), already used for NSCLC, are
undergoing clinical trials for other types of cancer
including gastrointestinal, breast, head and neck, and
bladder.
Length = 316
Score = 57.3 bits (138), Expect = 9e-09
Identities = 63/244 (25%), Positives = 95/244 (38%), Gaps = 62/244 (25%)
Query: 161 EKIFEDLREIGHGSFGAVYYARCLVSRE----IVAIKKMSYLGKQCAEKWADILKEIRFL 216
E F+ ++ +G G+FG VY + E VAIK++ A K +IL E +
Sbjct: 6 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVM 63
Query: 217 RQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCF 276
+ +P+ C L + CL S +I +L C
Sbjct: 64 ASVDNPHV-----CRL--------LGICLTSTVQLI---------------TQLMPFGCL 95
Query: 277 TEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 336
++ HK + + + C + +G+NYL +HRD+ A N+L+ VK+
Sbjct: 96 LDYV-----REHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKI 150
Query: 337 ADFGSASI-------------KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 383
DFG A + K P WMA E IL Y + DVWS G+T
Sbjct: 151 TDFGLAKLLGADEKEYHAEGGKVPIK-------WMALESIL---HRIYTHQSDVWSYGVT 200
Query: 384 CIEL 387
EL
Sbjct: 201 VWEL 204
Score = 52.3 bits (125), Expect = 4e-07
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 23/149 (15%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
++ + +P+ G L + G D + HK + + + C + +G
Sbjct: 62 VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 121
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI-------------KCPANSFVGT 113
+NYL +HRD+ A N+L+ VK+ DFG A + K P
Sbjct: 122 MNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIK----- 176
Query: 114 PYWMAPEVILAMDEGQYDGKVDVWSLGIT 142
WMA E IL Y + DVWS G+T
Sbjct: 177 --WMALESIL---HRIYTHQSDVWSYGVT 200
Score = 36.5 bits (84), Expect = 0.043
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 29/126 (23%)
Query: 623 GSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL--------TE 674
G D + HK + + + C + +G+NYL +HRD+ A N+L+ T+
Sbjct: 93 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITD 152
Query: 675 TGTVKLDTPDEQAGN-------------DSSKSNSITSEHSVQSVGV--------GVNPH 713
G KL DE+ + +S T + V S GV G P+
Sbjct: 153 FGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPY 212
Query: 714 DPTPNS 719
D P S
Sbjct: 213 DGIPAS 218
>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 4. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK4
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK4 has a limited tissue distribution. It
is mainly found in the testis, but is also present in
the cerebellum and kidney. It is expressed as multiple
splice variants with different domain architectures. It
is post-translationally palmitoylated and localized in
the membrane. GRK4 polymorphisms are associated with
hypertension and salt sensitivity, as they cause
hyperphosphorylation, desensitization, and
internalization of the dopamine 1 (D1) receptor while
increasing the expression of the angiotensin II type 1
receptor. GRK4 plays a crucial role in the D1 receptor
regulation of sodium excretion and blood pressure.
Length = 285
Score = 56.9 bits (137), Expect = 1e-08
Identities = 63/237 (26%), Positives = 97/237 (40%), Gaps = 43/237 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMS--YLGKQCAEKWADILKEIRFLRQLKH 221
F R +G G FG V + + ++ A KK+ + K+ E A L E R L ++
Sbjct: 2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMA--LNEKRILEKVNS 59
Query: 222 PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
+ Y LV+ G + +FH+ MGN F E A
Sbjct: 60 RFVVSLAYAYETKDALCLVLTIMNGG----------DLKFHIYNMGN-----PGFDEQRA 104
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
+F A +C G L L ++RD+K NILL + G ++++D G
Sbjct: 105 IF------------YAAELCCG----LEDLQRERIVYRDLKPENILLDDRGHIRISDLGL 148
Query: 342 ASIKCPANSF----VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
A ++ P VGT +MAPEVI + +Y D W LG E+ + + P+
Sbjct: 149 A-VQIPEGETVRGRVGTVGYMAPEVI---NNEKYTFSPDWWGLGCLIYEMIQGQSPF 201
Score = 44.2 bits (104), Expect = 2e-04
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSF----VGTPYWMAPEV 121
GL L ++RD+K NILL + G ++++D G A ++ P VGT +MAPEV
Sbjct: 114 GLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLA-VQIPEGETVRGRVGTVGYMAPEV 172
Query: 122 ILAMDEGQYDGKVDVWSLG 140
I + +Y D W LG
Sbjct: 173 I---NNEKYTFSPDWWGLG 188
>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor alpha.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) alpha; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
alpha is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR alpha forms homodimers or heterodimers
with PDGFR beta, depending on the nature of the PDGF
ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
alpha signaling is important in the formation of lung
alveoli, intestinal villi, mesenchymal dermis, and hair
follicles, as well as in the development of
oligodendrocytes, retinal astrocytes, neural crest
cells, and testicular cells. Aberrant PDGFR alpha
expression is associated with some human cancers.
Mutations in PDGFR alpha have been found within a subset
of gastrointestinal stromal tumors (GISTs). An active
fusion protein FIP1L1-PDGFR alpha, derived from
interstitial deletion, is associated with idiopathic
hypereosinophilic syndrome (HES) and chronic
eosinophilic leukemia (CEL).
Length = 400
Score = 57.3 bits (138), Expect = 1e-08
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 18/150 (12%)
Query: 304 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFV--GTPY----W 357
V RG+ +L S +HRD+ A N+LL + VK+ DFG A +++V G+ + W
Sbjct: 246 VARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKW 305
Query: 358 MAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPPYFNM-------NAMSALYHIAQN 409
MAPE I + Y DVWS GI E+ + PY M N + + Y +A+
Sbjct: 306 MAPESIF---DNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGYRMAKP 362
Query: 410 DTPCLQSSDWSVIKTISSTAERKPPYFNMN 439
D + D ++K +S E++P + +++
Sbjct: 363 DHATQEVYD-IMVKCWNSEPEKRPSFLHLS 391
Score = 54.3 bits (130), Expect = 2e-07
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFV--GTPY----W 116
V RG+ +L S +HRD+ A N+LL + VK+ DFG A +++V G+ + W
Sbjct: 246 VARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKW 305
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGI 141
MAPE I + Y DVWS GI
Sbjct: 306 MAPESIF---DNLYTTLSDVWSYGI 327
Score = 31.1 bits (70), Expect = 2.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
V RG+ +L S +HRD+ A N+LL + VK+
Sbjct: 246 VARGMEFLASKNCVHRDLAARNVLLAQGKIVKI 278
>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 3. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK3
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK3 (also known as beta-adrenergic
receptor kinase 2) is widely expressed in many tissues.
GRK3-deficient mice show a lack of olfactory receptor
desensitization and altered regulation of the M2
muscarinic airway. GRK3 is involved in modulating the
cholinergic response of airway smooth muscles. It also
plays a role in dopamine receptor regulation. GRK3
promoter polymorphisms may be associated with bipolar
disorder.
Length = 279
Score = 56.6 bits (136), Expect = 1e-08
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 292 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SIKCPA 348
E+E+ + ++ GL ++H+ ++RD+K NILL E G V+++D G A S K P
Sbjct: 94 FSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH 153
Query: 349 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
S VGT +MAPEV+ YD D +SLG +L P+
Sbjct: 154 AS-VGTHGYMAPEVL--QKGTAYDSSADWFSLGCMLFKLLRGHSPF 196
Score = 54.2 bits (130), Expect = 9e-08
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 51 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA---SIKCPA 107
E+E+ + ++ GL ++H+ ++RD+K NILL E G V+++D G A S K P
Sbjct: 94 FSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH 153
Query: 108 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLG 140
S VGT +MAPEV+ YD D +SLG
Sbjct: 154 AS-VGTHGYMAPEVL--QKGTAYDSSADWFSLG 183
Score = 33.1 bits (75), Expect = 0.57
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 636 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
E+E+ + ++ GL ++H+ ++RD+K NILL E G V++
Sbjct: 94 FSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRI 138
>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase,
Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK)
family; Spleen tyrosine kinase (Syk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk,
together with Zap-70, form the Syk subfamily of kinases
which are cytoplasmic (or nonreceptor) tyr kinases
containing two Src homology 2 (SH2) domains N-terminal
to the catalytic tyr kinase domain. Syk was first cloned
from the spleen, and its function in hematopoietic cells
is well-established. Syk is involved in the signaling
downstream of activated receptors (including B-cell and
Fc receptors) that contain ITAMs (immunoreceptor tyr
activation motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. More recently, Syk
expression has been detected in other cell types
(including epithelial cells, vascular endothelial cells,
neurons, hepatocytes, and melanocytes), suggesting a
variety of biological functions in non-immune cells. Syk
plays a critical role in maintaining vascular integrity
and in wound healing during embryogenesis. It also
regulates Vav3, which is important in osteoclast
function including bone development. In breast
epithelial cells, where Syk acts as a negative regulator
for epidermal growth factor receptor (EGFR) signaling,
loss of Syk expression is associated with abnormal
proliferation during cancer development suggesting a
potential role as a tumor suppressor. In mice, Syk has
been shown to inhibit malignant transformation of
mammary epithelial cells induced with murine mammary
tumor virus (MMTV).
Length = 257
Score = 56.1 bits (135), Expect = 2e-08
Identities = 60/240 (25%), Positives = 98/240 (40%), Gaps = 50/240 (20%)
Query: 169 EIGHGSFGAVY--YARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIE 226
E+G G+FG V + S + VA+K + A K ++L+E ++QL +P +
Sbjct: 2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALK-DELLREANVMQQLDNPYIVR 60
Query: 227 YRGCYLRDHTAW-LVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
G + + +W LVME + +G L F
Sbjct: 61 MIG--ICEAESWMLVME--------------------LAELG-------------PLNKF 85
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASI 344
+ + E+ I + V G+ YL +HRD+ A N+LL K++DFG S ++
Sbjct: 86 LQKNKHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKAL 145
Query: 345 KCPANSFVGTPY------WMAPEVILAMDEGQYDGKVDVWSLGITCIE-LAERKPPYFNM 397
N + + W APE M+ ++ K DVWS G+ E + + PY M
Sbjct: 146 GADENYYKAKTHGKWPVKWYAPE---CMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM 202
Score = 55.0 bits (132), Expect = 4e-08
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 1 MPAGSSLLRQLKHPNTIEYRGCYLRDHTAW-LVMEYC-LGSASDIIEVHKRPLKEEEIAA 58
+ +++++QL +P + G + + +W LVME LG + ++ +K + E+ I
Sbjct: 43 LLREANVMQQLDNPYIVRMIG--ICEAESWMLVMELAELGPLNKFLQKNKH-VTEKNITE 99
Query: 59 ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPANSFVGTPY-- 115
+ V G+ YL +HRD+ A N+LL K++DFG S ++ N + +
Sbjct: 100 LVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGK 159
Query: 116 ----WMAPEVILAMDEGQYDGKVDVWSLGI 141
W APE M+ ++ K DVWS G+
Sbjct: 160 WPVKWYAPE---CMNYYKFSSKSDVWSFGV 186
Score = 30.7 bits (69), Expect = 2.7
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 616 LVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
LVME LG + ++ +K + E+ I + V G+ YL +HRD+ A N+LL
Sbjct: 72 LVMELAELGPLNKFLQKNKH-VTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLL 128
>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine
Kinase, Zeta-chain-associated protein of 70kDa. Protein
Tyrosine Kinase (PTK) family; Zeta-chain-associated
protein of 70kDa (Zap-70); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Zap-70 is
a member of the Syk subfamily of kinases, which are
cytoplasmic (or nonreceptor) tyr kinases containing two
Src homology 2 (SH2) domains N-terminal to the catalytic
tyr kinase domain. Zap-70 is primarily expressed in
T-cells and NK cells, and is a crucial component in
T-cell receptor (TCR) signaling. Zap-70 binds the
phosphorylated ITAM (immunoreceptor tyr activation
motif) sequences of the activated TCR zeta-chain through
its SH2 domains, leading to its phosphorylation and
activation. It then phosphorylates target proteins,
which propagate the signals to downstream pathways.
Zap-70 is hardly detected in normal peripheral B-cells,
but is present in some B-cell malignancies. It is used
as a diagnostic marker for chronic lymphocytic leukemia
(CLL) as it is associated with the more aggressive
subtype of the disease.
Length = 257
Score = 55.3 bits (133), Expect = 2e-08
Identities = 66/257 (25%), Positives = 96/257 (37%), Gaps = 60/257 (23%)
Query: 169 EIGHGSFG----AVYYARCLVSREI-VAIKKMSYLGKQCAEKWA--DILKEIRFLRQLKH 221
E+G G+FG VY R ++I VAIK + K EK ++++E + QL +
Sbjct: 2 ELGSGNFGCVKKGVYKMR---KKQIDVAIKVL----KNENEKSVRDEMMREAEIMHQLDN 54
Query: 222 PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
P + G LVME G
Sbjct: 55 PYIVRMIGV-CEAEALMLVMEMASGGP--------------------------------- 80
Query: 282 LFNFEVHKR-PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
L F K+ + + + V G+ YL +HRD+ A N+LL K++DFG
Sbjct: 81 LNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFG 140
Query: 341 -SASIKC-----PANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGITCIE-LAERKP 392
S ++ A S P W APE I ++ + DVWS GIT E + +
Sbjct: 141 LSKALGADDSYYKARSAGKWPLKWYAPECINFR---KFSSRSDVWSYGITMWEAFSYGQK 197
Query: 393 PYFNMNAMSALYHIAQN 409
PY M + I Q
Sbjct: 198 PYKKMKGPEVMSFIEQG 214
Score = 50.3 bits (120), Expect = 1e-06
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 31 LVMEYCLGSASDIIEVHKR-PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 89
LVME G + K+ + + + V G+ YL +HRD+ A N+LL
Sbjct: 71 LVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVN 130
Query: 90 TGTVKLADFG-SASIKC-----PANSFVGTPY-WMAPEVILAMDEGQYDGKVDVWSLGIT 142
K++DFG S ++ A S P W APE I ++ + DVWS GIT
Sbjct: 131 QHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFR---KFSSRSDVWSYGIT 187
>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine
Kinase, Tie1. Protein Tyrosine Kinase (PTK) family;
Tie1; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie1 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. No specific ligand has been
identified for Tie1, although the angiopoietin, Ang-1,
binds to Tie1 through integrins at high concentrations.
In vivo studies of Tie1 show that it is critical in
vascular development.
Length = 297
Score = 55.4 bits (133), Expect = 3e-08
Identities = 79/307 (25%), Positives = 121/307 (39%), Gaps = 59/307 (19%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSRE----IVAIKKMSYLGKQCAEKWADILKEIRFLRQL 219
FED+ IG G+FG V R ++ ++ AIK + + + D E+ L +L
Sbjct: 6 FEDV--IGEGNFGQV--IRAMIKKDGLKMNAAIKMLKEFASENDHR--DFAGELEVLCKL 59
Query: 220 -KHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFT 277
HPN I G ++ +EY G+ D + R+ V L+ F
Sbjct: 60 GHHPNIINLLGACENRGYLYIAIEYAPYGNLLDFL------RKSRV------LETDPAFA 107
Query: 278 EHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 337
+ L +++ S V G+ YL IHRD+ A N+L+ E K+A
Sbjct: 108 KEHGT------ASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIA 161
Query: 338 DFG-SASIKCPANSFVGT-PY-WMAPEVILAMDEGQYDGKVDVWSLGI------------ 382
DFG S + +G P WMA E +++ Y K DVWS G+
Sbjct: 162 DFGLSRGEEVYVKKTMGRLPVRWMAIE---SLNYSVYTTKSDVWSFGVLLWEIVSLGGTP 218
Query: 383 ----TCIELAERKPPYFNM----NAMSALYHIAQN---DTPCLQSSDWSVIKTISSTAER 431
TC EL E+ P + M N +Y + + D P + + +S E
Sbjct: 219 YCGMTCAELYEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEA 278
Query: 432 KPPYFNM 438
+ Y NM
Sbjct: 279 RKAYVNM 285
Score = 45.8 bits (108), Expect = 5e-05
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 25/143 (17%)
Query: 2 PAGSSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICS 61
P G+ LL L+ +E + ++H G+AS L +++ S
Sbjct: 86 PYGN-LLDFLRKSRVLETDPAFAKEH----------GTAST--------LTSQQLLQFAS 126
Query: 62 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPANSFVGT-PY-WMA 118
V G+ YL IHRD+ A N+L+ E K+ADFG S + +G P WMA
Sbjct: 127 DVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMA 186
Query: 119 PEVILAMDEGQYDGKVDVWSLGI 141
E +++ Y K DVWS G+
Sbjct: 187 IE---SLNYSVYTTKSDVWSFGV 206
>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 6. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK6
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK6 is widely expressed in many tissues.
t is expressed as multiple splice variants with
different domain architectures. It is
post-translationally palmitoylated and localized in the
membrane. GRK6 plays important roles in the regulation
of dopamine, M3 muscarinic, opioid, and chemokine
receptor signaling. It also plays maladaptive roles in
addiction and Parkinson's disease. GRK6-deficient mice
exhibit altered dopamine receptor regulation, decreased
lymphocyte chemotaxis, and increased acute inflammation
and neutrophil chemotaxis.
Length = 285
Score = 55.0 bits (132), Expect = 5e-08
Identities = 63/237 (26%), Positives = 97/237 (40%), Gaps = 43/237 (18%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMS--YLGKQCAEKWADILKEIRFLRQLKH 221
F R +G G FG V + + ++ A KK+ + K+ E A L E + L ++
Sbjct: 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMA--LNEKQILEKVNS 59
Query: 222 PNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFA 281
+ Y LV+ L + D+ +FH+ MG F E A
Sbjct: 60 RFVVSLAYAYETKDALCLVLT--LMNGGDL--------KFHIYHMGE-----AGFEEGRA 104
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
+F A IC G L LH ++RD+K NILL + G ++++D G
Sbjct: 105 VF------------YAAEICCG----LEDLHQERIVYRDLKPENILLDDHGHIRISDLGL 148
Query: 342 ASIKCPANSF----VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
A + P VGT +MAPEV+ +Y D W+LG E+ + P+
Sbjct: 149 A-VHVPEGQTIKGRVGTVGYMAPEVV---KNERYTFSPDWWALGCLLYEMIAGQSPF 201
Score = 46.6 bits (110), Expect = 3e-05
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 57 AAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSF----VG 112
A IC G L LH ++RD+K NILL + G ++++D G A + P VG
Sbjct: 109 AEICCG----LEDLHQERIVYRDLKPENILLDDHGHIRISDLGLA-VHVPEGQTIKGRVG 163
Query: 113 TPYWMAPEVILAMDEGQYDGKVDVWSLG 140
T +MAPEV+ +Y D W+LG
Sbjct: 164 TVGYMAPEVV---KNERYTFSPDWWALG 188
>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 1.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
Inactivation of LATS1 in mice results in the development
of various tumors, including sarcomas and ovarian
cancer. Promoter methylation, loss of heterozygosity,
and missense mutations targeting the LATS1 gene have
also been found in human sarcomas and ovarian cancers.
In addition, decreased expression of LATS1 is associated
with an aggressive phenotype and poor prognosis. LATS1
induces G2 arrest and promotes cytokinesis. It may be a
component of the mitotic exit network in higher
eukaryotes.
Length = 382
Score = 55.4 bits (133), Expect = 5e-08
Identities = 63/284 (22%), Positives = 102/284 (35%), Gaps = 87/284 (30%)
Query: 163 IFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHP 222
+F ++ +G G+FG V AR + ++ + A+K + + A + E L + +
Sbjct: 2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNE 61
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
+ + + VM+Y G M + L ++ F E A
Sbjct: 62 WVVRLYYSFQDKDNLYFVMDYIPGG-----------------DMMSLLIRMGIFPEDLAR 104
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-- 340
F E A+ S +H +G IHRD+K NIL+ G +KL DFG
Sbjct: 105 FYIA--------ELTCAVES--------VHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC 148
Query: 341 -------------------------------SASIKCP------------------ANSF 351
A+ +C A+S
Sbjct: 149 TGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSL 208
Query: 352 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYF 395
VGTP ++APEV+L Y D WS+G+ E+ +PP+
Sbjct: 209 VGTPNYIAPEVLLRTG---YTQLCDWWSVGVILYEMLVGQPPFL 249
Score = 45.8 bits (108), Expect = 7e-05
Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 54/123 (43%)
Query: 70 LHSLGRIHRDVKAGNILLTETGTVKLADFG------------------------------ 99
+H +G IHRD+K NIL+ G +KL DFG
Sbjct: 117 VHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNE 176
Query: 100 ---SASIKCP------------------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWS 138
A+ +C A+S VGTP ++APEV+L Y D WS
Sbjct: 177 WGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTG---YTQLCDWWS 233
Query: 139 LGI 141
+G+
Sbjct: 234 VGV 236
Score = 32.7 bits (74), Expect = 0.85
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 655 LHSLGRIHRDVKAGNILLTETGTVKL 680
+H +G IHRD+K NIL+ G +KL
Sbjct: 117 VHKMGFIHRDIKPDNILIDRDGHIKL 142
>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA10
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). EphA10,
which contains an inactive tyr kinase domain, may
function to attenuate signals of co-clustered active
receptors. EphA10 is mainly expressed in the testis.
Ephrin/EphR interaction results in cell-cell repulsion
or adhesion, making it important in neural development
and plasticity, cell morphogenesis, cell-fate
determination, embryonic development, tissue patterning,
and angiogenesis.
Length = 266
Score = 53.4 bits (128), Expect = 1e-07
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 9/145 (6%)
Query: 3 AGSSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASD-IIEVHKRPLKEEEIAAICS 61
A + L Q H N + G R +T +V EY A D + H+ L ++ +
Sbjct: 55 AEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLP 114
Query: 62 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS---IKCPANSFVGTP--YW 116
G+ G+ YL +G +H+ + A +L+ K++ F + + G W
Sbjct: 115 GLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLW 174
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGI 141
APE A+ + DVWS GI
Sbjct: 175 AAPE---AIQYHHFSSASDVWSFGI 196
Score = 49.9 bits (119), Expect = 2e-06
Identities = 62/244 (25%), Positives = 92/244 (37%), Gaps = 56/244 (22%)
Query: 168 REIGHGSFGAVYYARCL---VSREI-VAIKKMSYLGKQCAEKWA-DILKEIRFLRQLKHP 222
R +G G FG + CL RE+ VAI L C++K L E L Q H
Sbjct: 11 RILGTGRFGELCRG-CLKLPSKRELPVAIHT---LRAGCSDKQRRGFLAEALTLGQFDHS 66
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
N + G R +T +V EY M N AL
Sbjct: 67 NIVRLEGVITRGNTMMIVTEY----------------------MSNG-----------AL 93
Query: 283 FNF-EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGS 341
+F H+ L ++ + G+ G+ YL +G +H+ + A +L+ K++ F
Sbjct: 94 DSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRR 153
Query: 342 AS---IKCPANSFVGTP--YWMAPEVILAMDEGQYDGKVDVWSLGITCIEL---AERKPP 393
+ + G W APE A+ + DVWS GI E+ ER P
Sbjct: 154 LQEDKSEAIYTTMSGKSPVLWAAPE---AIQYHHFSSASDVWSFGIVMWEVMSYGER--P 208
Query: 394 YFNM 397
Y++M
Sbjct: 209 YWDM 212
Score = 29.5 bits (66), Expect = 5.7
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 616 LVMEYCLGSASD-IIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
+V EY A D + H+ L ++ + G+ G+ YL +G +H+ + A +L+
Sbjct: 83 IVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVN 141
>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Axl subfamily; catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). The Axl subfamily
consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and
similar proteins. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with two
immunoglobulin-like domains followed by two fibronectin
type III repeats, a transmembrane segment, and an
intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl subfamily members are
implicated in a variety of cellular effects including
survival, proliferation, migration, and phagocytosis.
They are also associated with several types of cancer as
well as inflammatory, autoimmune, vascular, and kidney
diseases. Mer is named after its original reported
expression pattern (monocytes, epithelial, and
reproductive tissues). It is required for the ingestion
of apoptotic cells by phagocytes such as macrophages,
retinal pigment epithelial cells, and dendritic cells.
Mer is also important in maintaining immune homeostasis.
Length = 273
Score = 53.3 bits (128), Expect = 1e-07
Identities = 62/246 (25%), Positives = 100/246 (40%), Gaps = 53/246 (21%)
Query: 168 REIGHGSFGAVYYARCLVSREI-----VAIKKMSYLGKQCAEKWADILKEIRFLRQLKHP 222
+ +G G FG+V + +S++ VA+K M +E + L E ++ HP
Sbjct: 5 KILGEGEFGSVMEGQ--LSQDDGSQLKVAVKTMKLDIHTYSE-IEEFLSEAACMKDFDHP 61
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIER-EFHVEGMGNRLQQLKCFTEHFA 281
N ++ G ++ + +++ + H + +RL L
Sbjct: 62 NVMKLIGVCFE-------ASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQT 114
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG- 340
L F V +IA G+ YL + IHRD+ A N +L E TV +ADFG
Sbjct: 115 LLKFMV--------DIA-------LGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGL 159
Query: 341 SASIKCPANSFVGTPY-----------WMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 389
S I + G Y W+A E ++ + Y K DVW+ G+T E+A
Sbjct: 160 SKKI------YSGDYYRQGRIAKMPVKWIAIE---SLADRVYTSKSDVWAFGVTMWEIAT 210
Query: 390 R-KPPY 394
R + PY
Sbjct: 211 RGQTPY 216
Score = 46.0 bits (109), Expect = 4e-05
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 21/92 (22%)
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPANSFVGTPY------ 115
+ G+ YL + IHRD+ A N +L E TV +ADFG S I + G Y
Sbjct: 122 IALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKI------YSGDYYRQGRIA 175
Query: 116 -----WMAPEVILAMDEGQYDGKVDVWSLGIT 142
W+A E ++ + Y K DVW+ G+T
Sbjct: 176 KMPVKWIAIE---SLADRVYTSKSDVWAFGVT 204
>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein
Tyrosine Kinases, Apoptosis-associated tyrosine kinases
1 and 3. Protein Tyrosine Kinase (PTK) family;
Apoptosis-associated tyrosine kinase 1 (Aatyk1) and
Aatyk3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Aatyk1 and Aatyk3 are
members of the Aatyk subfamily of proteins. Aatyk3 is a
receptor kinase containing a transmembrane segment and a
long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk1 has a similar domain arrangement but
without the transmembrane segment and is thus, a
cytoplasmic (or nonreceptor) kinase. The expression of
Aatyk1 (also referred simply as Aatyk) is upregulated
during growth arrest and apoptosis in myeloid cells.
Aatyk1 has been implicated in neural differentiation,
and is a regulator of the Na-K-2Cl cotransporter, a
membrane protein involved in cell proliferation and
survival, epithelial transport, and blood pressure
control. The function of Aatyk3 is still unknown.
Length = 269
Score = 52.6 bits (126), Expect = 2e-07
Identities = 65/240 (27%), Positives = 97/240 (40%), Gaps = 54/240 (22%)
Query: 168 REIGHGSFGAVYYARC---LVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
+EIG+G FG V ++V + Q K+ L+E + R L+H N
Sbjct: 1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKF---LEEAQPYRSLQHSNL 57
Query: 225 IEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALF 283
++ G LVME+C LG + + LQ++ C
Sbjct: 58 LQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPT--TLQRMAC-------- 107
Query: 284 NFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 343
EIA GL +LH IH D+ N LLT TVK+ D+G +
Sbjct: 108 ------------EIAL-------GLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSH 148
Query: 344 IKCPANSFVGTP-------YWMAPEVI-------LAMDEGQYDGKVDVWSLGITCIELAE 389
K + +V TP W+APE++ L +D+ + + +VWSLG+T EL E
Sbjct: 149 NKYKEDYYV-TPDQLWVPLRWIAPELVDEVHGNLLVVDQTK---ESNVWSLGVTIWELFE 204
Score = 49.2 bits (117), Expect = 3e-06
Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 39/171 (22%)
Query: 9 RQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKR-------PLKEEEIAA-I 59
R L+H N ++ G LVME+C LG + ++ P + +A I
Sbjct: 50 RSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEI 109
Query: 60 CSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTP----- 114
G+L +LH IH D+ N LLT TVK+ D+G + K + +V TP
Sbjct: 110 ALGLL----HLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYV-TPDQLWV 164
Query: 115 --YWMAPEVI-------LAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFD 156
W+APE++ L +D+ + + +VWSLG+T I ELF+
Sbjct: 165 PLRWIAPELVDEVHGNLLVVDQTK---ESNVWSLGVT--------IWELFE 204
>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed.
Length = 932
Score = 54.0 bits (130), Expect = 3e-07
Identities = 70/272 (25%), Positives = 109/272 (40%), Gaps = 85/272 (31%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWAD--ILKEIRFLR---- 217
++ +R IG G G VY A V VA+KK+ E ++ +LK+ RFLR
Sbjct: 4 YDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIR-------EDLSENPLLKK-RFLREAKI 55
Query: 218 --QLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDII--EVHWIEREFHVEGMGNRLQQ- 272
L HP +V Y + S D + + +IE G L+
Sbjct: 56 AADLIHPG---------------IVPVYSICSDGDPVYYTMPYIE--------GYTLKSL 92
Query: 273 LKCFTEHFALFNFEVHKRPLKEEE-IAA-------ICSGVLRGLNYLHSLGRIHRDVKAG 324
LK + E + L E+ + A IC+ + Y+HS G +HRD+K
Sbjct: 93 LKSVWQK------ESLSKELAEKTSVGAFLSIFHKICATI----EYVHSKGVLHRDLKPD 142
Query: 325 NILLTETGTVKLADFGSA-------------SIKCPANSF---------VGTPYWMAPEV 362
NILL G V + D+G+A + + VGTP +MAPE
Sbjct: 143 NILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPER 202
Query: 363 ILAMDEGQYDGKVDVWSLGITCIELAERKPPY 394
+L + + D+++LG+ ++ PY
Sbjct: 203 LLGVPASE---STDIYALGVILYQMLTLSFPY 231
Score = 50.2 bits (120), Expect = 4e-06
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 37/127 (29%)
Query: 45 EVHKRPLKEEE-IAA-------ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLA 96
E + L E+ + A IC+ + Y+HS G +HRD+K NILL G V +
Sbjct: 100 ESLSKELAEKTSVGAFLSIFHKICATI----EYVHSKGVLHRDLKPDNILLGLFGEVVIL 155
Query: 97 DFGSA-------------SIKCPANSF---------VGTPYWMAPEVILAMDEGQYDGKV 134
D+G+A + + VGTP +MAPE +L + +
Sbjct: 156 DWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASE---ST 212
Query: 135 DVWSLGI 141
D+++LG+
Sbjct: 213 DIYALGV 219
Score = 37.8 bits (88), Expect = 0.028
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 630 EVHKRPLKEEE-IAA-------ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTV--- 678
E + L E+ + A IC+ + Y+HS G +HRD+K NILL G V
Sbjct: 100 ESLSKELAEKTSVGAFLSIFHKICATI----EYVHSKGVLHRDLKPDNILLGLFGEVVIL 155
Query: 679 -------KLDTPDEQAGNDSSKSNSITSEHSVQSVGVGVNPHDPTPN 718
K ++ D + N S ++ VG TP+
Sbjct: 156 DWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVG------TPD 196
>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine
Kinase, HER2. Protein Tyrosine Kinase (PTK) family;
HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER2 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER2 does not bind to any known EGFR
subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner with other ligand-bound EGFR proteins
and functions as a signal amplifier, with the HER2-HER3
heterodimer being the most potent pair in mitogenic
signaling. HER2 plays an important role in cell
development, proliferation, survival and motility.
Overexpression of HER2 results in its activation and
downstream signaling, even in the absence of ligand.
HER2 overexpression, mainly due to gene amplification,
has been shown in a variety of human cancers. Its role
in breast cancer is especially well-documented. HER2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. HER2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the survival
rates of patients with HER2-overexpressing breast
cancer.
Length = 279
Score = 52.3 bits (125), Expect = 3e-07
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 23/113 (20%)
Query: 288 HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI--- 344
+K + +++ C + +G++YL + +HRD+ A N+L+ VK+ DFG A +
Sbjct: 102 NKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDI 161
Query: 345 ----------KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
K P WMA E IL ++ + DVWS G+T EL
Sbjct: 162 DETEYHADGGKVPIK-------WMALESIL---HRRFTHQSDVWSYGVTVWEL 204
Score = 51.9 bits (124), Expect = 5e-07
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 25/124 (20%)
Query: 32 VMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 91
+M Y G D + +K + +++ C + +G++YL + +HRD+ A N+L+
Sbjct: 89 LMPY--GCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPN 146
Query: 92 TVKLADFGSASI-------------KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWS 138
VK+ DFG A + K P WMA E IL ++ + DVWS
Sbjct: 147 HVKITDFGLARLLDIDETEYHADGGKVPIK-------WMALESIL---HRRFTHQSDVWS 196
Query: 139 LGIT 142
G+T
Sbjct: 197 YGVT 200
Score = 34.6 bits (79), Expect = 0.16
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 615 QLV---MEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNIL 671
QLV M Y G D + +K + +++ C + +G++YL + +HRD+ A N+L
Sbjct: 84 QLVTQLMPY--GCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVL 141
Query: 672 LTETGTVKL 680
+ VK+
Sbjct: 142 VKSPNHVKI 150
>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Insulin-like Growth Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Insulin-like Growth
Factor-1 Receptor (IGF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. IGF-1R is
a receptor tyr kinases (RTK) that is composed of two
alphabeta heterodimers. Binding of the ligand (IGF-1 or
IGF-2) to the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, which stimulates downstream kinase
activities and biological function. IGF-1R signaling is
important in the differentiation, growth, and survival
of normal cells. In cancer cells, where it is frequently
overexpressed, IGF-1R is implicated in proliferation,
the suppression of apoptosis, invasion, and metastasis.
IGF-1R is being developed as a therapeutic target in
cancer treatment.
Length = 277
Score = 52.3 bits (125), Expect = 3e-07
Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 32/249 (12%)
Query: 168 REIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNTIEY 227
RE+G GSFG VY +++ +V + + + + + A + + I FL + + ++
Sbjct: 12 RELGQGSFGMVYEG---IAKGVVKDEPETRVAIKTVNEAASMRERIEFLNE---ASVMKE 65
Query: 228 RGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEG-MGNRLQQLKCFTEHFALFNFE 286
C+ H L+ G + +I E G + + L+ L+ E+ N
Sbjct: 66 FNCH---HVVRLLGVVSQGQPTLVI------MELMTRGDLKSYLRSLRPEMEN----NPV 112
Query: 287 VHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKC 346
LK+ + + + G+ YL++ +HRD+ A N ++ E TVK+ DFG
Sbjct: 113 QAPPSLKK--MIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIY 170
Query: 347 PANSF------VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPYFNMNA 399
+ + + WM+PE ++ +G + DVWS G+ E+A + PY M+
Sbjct: 171 ETDYYRKGGKGLLPVRWMSPE---SLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSN 227
Query: 400 MSALYHIAQ 408
L + +
Sbjct: 228 EQVLRFVME 236
Score = 43.9 bits (103), Expect = 2e-04
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 66 GLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSF------VGTPYWMAP 119
G+ YL++ +HRD+ A N ++ E TVK+ DFG + + + WM+P
Sbjct: 131 GMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSP 190
Query: 120 EVILAMDEGQYDGKVDVWSLGI 141
E ++ +G + DVWS G+
Sbjct: 191 E---SLKDGVFTTYSDVWSFGV 209
>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear
Dbf2-Related kinase-like Protein Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), NDR kinase
subfamily, fungal NDR-like proteins, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The NDR subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This group is
composed of fungal NDR-like proteins including
Saccharomyces cerevisiae CBK1 (or CBK1p),
Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago
maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like
NDR kinase, group members contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. CBK1 is an essential component in the RAM
(regulation of Ace2p activity and cellular
morphogenesis) network. CBK1 and Orb6 play similar roles
in coordinating cell morphology with cell cycle
progression. Ukc1 is involved in morphogenesis,
pathogenicity, and pigment formation. Cot1 plays a role
in polar tip extension.
Length = 377
Score = 52.9 bits (127), Expect = 4e-07
Identities = 39/140 (27%), Positives = 52/140 (37%), Gaps = 54/140 (38%)
Query: 311 LHSLGRIHRDVKAGNILLTETGTVKLADFG-------------------SASIKCPAN-- 349
+H LG IHRD+K NIL+ G +KL+DFG S K +
Sbjct: 117 VHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNR 176
Query: 350 ------------------------------SFVGTPYWMAPEVILAMDEGQYDGKVDVWS 379
S VGTP ++APE+ L GQ + D WS
Sbjct: 177 NSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQ---ECDWWS 233
Query: 380 LGITCIELAERKPPYFNMNA 399
LG E PP+ + N+
Sbjct: 234 LGAIMFECLIGWPPFCSENS 253
Score = 50.2 bits (120), Expect = 2e-06
Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 54/122 (44%)
Query: 70 LHSLGRIHRDVKAGNILLTETGTVKLADFG-------------------SASIKCPAN-- 108
+H LG IHRD+K NIL+ G +KL+DFG S K +
Sbjct: 117 VHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNR 176
Query: 109 ------------------------------SFVGTPYWMAPEVILAMDEGQYDGKVDVWS 138
S VGTP ++APE+ L GQ + D WS
Sbjct: 177 NSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQ---ECDWWS 233
Query: 139 LG 140
LG
Sbjct: 234 LG 235
Score = 37.9 bits (88), Expect = 0.017
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 655 LHSLGRIHRDVKAGNILLTETGTVKL 680
+H LG IHRD+K NIL+ G +KL
Sbjct: 117 VHKLGFIHRDIKPDNILIDRGGHIKL 142
>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase;
Provisional.
Length = 507
Score = 52.8 bits (126), Expect = 5e-07
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 56 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSF 110
I + VL GL LH +G +HRD+K N+L+T G VK+ DFG+A C +F
Sbjct: 311 IKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINF 365
Score = 52.8 bits (126), Expect = 5e-07
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 297 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSF 351
I + VL GL LH +G +HRD+K N+L+T G VK+ DFG+A C +F
Sbjct: 311 IKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINF 365
Score = 42.0 bits (98), Expect = 0.001
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 641 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
I + VL GL LH +G +HRD+K N+L+T G VK+
Sbjct: 311 IKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKI 350
>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine
Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family;
Tyro3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyro3 (or Sky) is a
member of the Axl subfamily, which is composed of
receptor tyr kinases (RTKs) containing an extracellular
ligand-binding region with two immunoglobulin-like
domains followed by two fibronectin type III repeats, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, Gas6 and protein S,
leads to receptor dimerization, autophosphorylation,
activation, and intracellular signaling. Tyro3 is
predominantly expressed in the central nervous system
and the brain, and functions as a neurotrophic factor.
It is also expressed in osteoclasts and has a role in
bone resorption.
Length = 273
Score = 51.5 bits (123), Expect = 6e-07
Identities = 64/252 (25%), Positives = 95/252 (37%), Gaps = 65/252 (25%)
Query: 168 REIGHGSFGAVYYARCLV---SREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
R +G G FG+V A+ S + VA+K M + + L+E +++ HPN
Sbjct: 5 RMLGKGEFGSVREAQLKSEDGSFQKVAVK-MLKADIFSSSDIEEFLREAACMKEFDHPNV 63
Query: 225 IEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRL---QQLKCFTEHFA 281
I+ G LR RL + F +H
Sbjct: 64 IKLIGVSLRSRAK------------------------------GRLPIPMVILPFMKHGD 93
Query: 282 LFNFEVHKR------PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVK 335
L F + R L + + + G+ YL S IHRD+ A N +L E TV
Sbjct: 94 LHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVC 153
Query: 336 LADFG-SASIKCPANSFVGTPY-----------WMAPEVILAMDEGQYDGKVDVWSLGIT 383
+ADFG S I + G Y W+A E ++ + Y DVW+ G+T
Sbjct: 154 VADFGLSKKI------YSGDYYRQGCASKLPVKWLALE---SLADNVYTTHSDVWAFGVT 204
Query: 384 CIELAER-KPPY 394
E+ R + PY
Sbjct: 205 MWEIMTRGQTPY 216
Score = 44.5 bits (105), Expect = 1e-04
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPANSFVGTPY------ 115
+ G+ YL S IHRD+ A N +L E TV +ADFG S I + G Y
Sbjct: 122 IASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKI------YSGDYYRQGCAS 175
Query: 116 -----WMAPEVILAMDEGQYDGKVDVWSLGIT 142
W+A E ++ + Y DVW+ G+T
Sbjct: 176 KLPVKWLALE---SLADNVYTTHSDVWAFGVT 204
Score = 30.7 bits (69), Expect = 2.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTV 678
+ G+ YL S IHRD+ A N +L E TV
Sbjct: 122 IASGMEYLSSKNFIHRDLAARNCMLNENMTV 152
>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine
Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR is a
receptor tyr kinase (RTK) that is composed of two
alphabeta heterodimers. Binding of the insulin ligand to
the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR signaling plays an important
role in many cellular processes including glucose
homeostasis, glycogen synthesis, lipid and protein
metabolism, ion and amino acid transport, cell cycle and
proliferation, cell differentiation, gene transcription,
and nitric oxide synthesis. Insulin resistance, caused
by abnormalities in InsR signaling, has been described
in diabetes, hypertension, cardiovascular disease,
metabolic syndrome, heart failure, and female
infertility.
Length = 288
Score = 50.7 bits (121), Expect = 1e-06
Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 48/253 (18%)
Query: 158 EDPEKIFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLR 217
E + LRE+G GSFG VY +R+I+ + + + + + A + + I FL
Sbjct: 2 EVSREKITLLRELGQGSFGMVYEG---NARDIIKGEAETRVAVKTVNESASLRERIEFLN 58
Query: 218 QLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEG-MGNRLQQLKCF 276
+ + ++ C+ H L+ G + ++ E G + + L+ L+
Sbjct: 59 E---ASVMKGFTCH---HVVRLLGVVSKGQPTLVV------MELMAHGDLKSYLRSLRPE 106
Query: 277 TEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 336
E+ + P +E+ + + + G+ YL++ +HRD+ A N ++ TVK+
Sbjct: 107 AEN------NPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKI 160
Query: 337 ADFGSASIKCPANSFVGTPY------------WMAPEVILAMDEGQYDGKVDVWSLGITC 384
DFG T Y WMAPE ++ +G + D+WS G+
Sbjct: 161 GDFGM------TRDIYETDYYRKGGKGLLPVRWMAPE---SLKDGVFTTSSDMWSFGVVL 211
Query: 385 IE---LAERKPPY 394
E LAE+ PY
Sbjct: 212 WEITSLAEQ--PY 222
Score = 45.0 bits (106), Expect = 1e-04
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 21/100 (21%)
Query: 54 EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGT 113
+E+ + + + G+ YL++ +HRD+ A N ++ TVK+ DFG T
Sbjct: 119 QEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGM------TRDIYET 172
Query: 114 PY------------WMAPEVILAMDEGQYDGKVDVWSLGI 141
Y WMAPE ++ +G + D+WS G+
Sbjct: 173 DYYRKGGKGLLPVRWMAPE---SLKDGVFTTSSDMWSFGV 209
Score = 29.2 bits (65), Expect = 9.3
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 639 EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+E+ + + + G+ YL++ +HRD+ A N ++ TVK+
Sbjct: 119 QEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKI 160
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 51.8 bits (124), Expect = 1e-06
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 30 WLVMEYCLGSASDIIEV-HKRPLKEEEIAA-ICSGVLRGLNYLHSLGRIHRDVKAGNILL 87
+LVMEY +G D+ + H +EE+A S V L+YLH G IHRD+K N+L+
Sbjct: 80 YLVMEYLIGG--DVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLI 137
Query: 88 TETGTVKLADFGSASIK 104
+ G +KL DFG + +
Sbjct: 138 SNEGHIKLTDFGLSKVT 154
Score = 48.7 bits (116), Expect = 1e-05
Identities = 51/193 (26%), Positives = 77/193 (39%), Gaps = 55/193 (28%)
Query: 164 FEDLREIGHGSFGAVYYARCLVSREIVAIK---KMSYLGKQC-----AEKWADILKEIRF 215
F ++ I G+FG VY R + ++ A+K K + K AE+ A L + F
Sbjct: 6 FVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPF 65
Query: 216 LRQLKHPNTIEYRGCYLRDHTA---WLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQ 272
+ L Y +A +LVMEY +G ++ H+ G
Sbjct: 66 IVHL-----------YYSLQSANNVYLVMEYLIGGD--------VKSLLHIYGY------ 100
Query: 273 LKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 332
F E A+ S V L+YLH G IHRD+K N+L++ G
Sbjct: 101 ---FDEEMAVKYI----------------SEVALALDYLHRHGIIHRDLKPDNMLISNEG 141
Query: 333 TVKLADFGSASIK 345
+KL DFG + +
Sbjct: 142 HIKLTDFGLSKVT 154
Score = 42.6 bits (100), Expect = 8e-04
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 616 LVMEYCLGSASDIIEV-HKRPLKEEEIAA-ICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
LVMEY +G D+ + H +EE+A S V L+YLH G IHRD+K N+L++
Sbjct: 81 LVMEYLIGG--DVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLIS 138
Query: 674 ETGTVKL 680
G +KL
Sbjct: 139 NEGHIKL 145
Score = 31.8 bits (72), Expect = 1.8
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 352 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
+GTP ++APE++L G VD W+LG+ E PP FN
Sbjct: 541 LGTPDYLAPELLLGKPHGP---AVDWWALGVCLFEFLTGIPP-FN 581
>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Tie
subfamily; catalytic (c) domain. The Tie subfamily
consists of Tie1 and Tie2. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie proteins are
receptor tyr kinases (RTKs) containing an extracellular
region, a transmembrane segment, and an intracellular
catalytic domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2, while no specific
ligand has been identified for Tie1. The binding of
Ang-1 to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. In vivo studies of Tie1 show that it is
critical in vascular development.
Length = 270
Score = 49.3 bits (117), Expect = 3e-06
Identities = 64/251 (25%), Positives = 98/251 (39%), Gaps = 46/251 (18%)
Query: 170 IGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEK--WADILKEIRFLRQL-KHPNTIE 226
IG G+FG V + + ++ + + K+ A K D E+ L +L HPN I
Sbjct: 3 IGEGNFGQV--LKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 60
Query: 227 YRGCYLRDHTAWLVMEYC-LGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNF 285
G +L +EY G+ D L++ + A
Sbjct: 61 LLGACEHRGYLYLAIEYAPHGNLLDF------------------LRKSRVLETDPAFAIA 102
Query: 286 EVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASI 344
L +++ + V RG++YL IHRD+ A NIL+ E K+ADFG S
Sbjct: 103 NSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQ 162
Query: 345 KCPANSFVGT-PY-WMAPEVILAMDEGQYDGKVDVWSLGI----------------TCIE 386
+ +G P WMA E +++ Y DVWS G+ TC E
Sbjct: 163 EVYVKKTMGRLPVRWMAIE---SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE 219
Query: 387 LAERKPPYFNM 397
L E+ P + +
Sbjct: 220 LYEKLPQGYRL 230
Score = 45.1 bits (106), Expect = 8e-05
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 2 PAGSSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICS 61
P G+ LL L+ +E + + +AS L +++ +
Sbjct: 79 PHGN-LLDFLRKSRVLETDPAFAIAN----------STAST--------LSSQQLLHFAA 119
Query: 62 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-SASIKCPANSFVGT-PY-WMA 118
V RG++YL IHRD+ A NIL+ E K+ADFG S + +G P WMA
Sbjct: 120 DVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMA 179
Query: 119 PEVILAMDEGQYDGKVDVWSLGI 141
E +++ Y DVWS G+
Sbjct: 180 IE---SLNYSVYTTNSDVWSYGV 199
>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor beta.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) beta; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
beta is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR beta forms homodimers or heterodimers
with PDGFR alpha, depending on the nature of the PDGF
ligand. PDGF-BB and PDGF-DD induce PDGFR beta
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
beta signaling leads to a variety of cellular effects
including the stimulation of cell growth and chemotaxis,
as well as the inhibition of apoptosis and GAP
junctional communication. It is critical in normal
angiogenesis as it is involved in the recruitment of
pericytes and smooth muscle cells essential for vessel
stability. Aberrant PDGFR beta expression is associated
with some human cancers. The continuously-active fusion
proteins of PDGFR beta with COL1A1 and TEL are
associated with dermatofibrosarcoma protuberans (DFSP)
and a subset of chronic myelomonocytic leukemia (CMML),
respectively.
Length = 401
Score = 50.0 bits (119), Expect = 3e-06
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 304 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFV--GTPY----W 357
V G+ +L S +HRD+ A N+L+ E VK+ DFG A ++++ G+ + W
Sbjct: 248 VANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKW 307
Query: 358 MAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
MAPE I Y DVWS GI E+
Sbjct: 308 MAPESIF---NNLYTTLSDVWSFGILLWEI 334
Score = 49.6 bits (118), Expect = 4e-06
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFV--GTPY----W 116
V G+ +L S +HRD+ A N+L+ E VK+ DFG A ++++ G+ + W
Sbjct: 248 VANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKW 307
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGI 141
MAPE I Y DVWS GI
Sbjct: 308 MAPESIF---NNLYTTLSDVWSFGI 329
>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
Length = 267
Score = 49.1 bits (118), Expect = 3e-06
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 282 LFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET-GTVKLADFG 340
LF+ + L E E+ I ++ LN LH IH D+K N+L + L D+G
Sbjct: 96 LFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYG 155
Query: 341 SASIKCPANSFVGTPYWMAPEVILAMDEGQ-YDGKVDVWSLGITCIELAERKPPY 394
I + + GT + +PE I G YD D W++G+ EL K P+
Sbjct: 156 LCKIIGTPSCYDGTLDYFSPEKIK----GHNYDVSFDWWAVGVLTYELLTGKHPF 206
Score = 42.5 bits (101), Expect = 4e-04
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 12 KHPNTIEYRGCY--LRDHTAWLVMEYCLGSASDIIEV--HKRPLKEEEIAAICSGVLRGL 67
+PN I+ L+ H L+M+Y D+ ++ + L E E+ I ++ L
Sbjct: 67 DNPNFIKLYYSVTTLKGHV--LIMDYIKDG--DLFDLLKKEGKLSEAEVKKIIRQLVEAL 122
Query: 68 NYLHSLGRIHRDVKAGNILLTET-GTVKLADFGSASIKCPANSFVGTPYWMAPEVILAMD 126
N LH IH D+K N+L + L D+G I + + GT + +PE I
Sbjct: 123 NDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIK--- 179
Query: 127 EGQ-YDGKVDVWSLGI 141
G YD D W++G+
Sbjct: 180 -GHNYDVSFDWWAVGV 194
Score = 36.4 bits (85), Expect = 0.038
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 599 HSYNNNNSN----YSSLFSPQ---LVMEYCLGSASDIIEV--HKRPLKEEEIAAICSGVL 649
H +N N Y S+ + + L+M+Y D+ ++ + L E E+ I ++
Sbjct: 62 HQLMKDNPNFIKLYYSVTTLKGHVLIMDYIKDG--DLFDLLKKEGKLSEAEVKKIIRQLV 119
Query: 650 RGLNYLHSLGRIHRDVKAGNIL 671
LN LH IH D+K N+L
Sbjct: 120 EALNDLHKHNIIHNDIKLENVL 141
>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 2.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 2 (Ror2); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror2 plays important roles in skeletal
and heart formation. Ror2-deficient mice show widespread
bone abnormalities, ventricular defects in the heart,
and respiratory dysfunction. Mutations in human Ror2
result in two different bone development genetic
disorders, recessive Robinow syndrome and brachydactyly
type B. Ror2 is also implicated in neural development.
Length = 283
Score = 49.3 bits (117), Expect = 4e-06
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 30/161 (18%)
Query: 6 SLLR-QLKHPNTIEYRGCYLRDHTAWLVMEYC-----------------LGSASDIIEVH 47
+++R +L+HPN + G ++ ++ YC +GS D V
Sbjct: 59 AMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTV- 117
Query: 48 KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG-------S 100
K L+ + I + + G+ +L S +H+D+ N+L+ + VK++D G +
Sbjct: 118 KSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAA 177
Query: 101 ASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
K NS + WM+PE I+ G++ D+WS G+
Sbjct: 178 DYYKLMGNSLLPI-RWMSPEAIMY---GKFSIDSDIWSYGV 214
Score = 46.6 bits (110), Expect = 3e-05
Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 39/235 (16%)
Query: 167 LREIGHGSFGAVYYARCLVS-----REIVAIKKMSYLGKQCAE-KWADILKEIRFLR-QL 219
+ E+G FG VY + + VAIK + K AE + K +R +L
Sbjct: 10 MEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTL----KDKAEGPLREEFKHEAMMRSRL 65
Query: 220 KHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEH 279
+HPN + G ++ ++ YC S SD+ E + R H + +G+
Sbjct: 66 QHPNIVCLLGVVTKEQPLSMIFSYC--SHSDLHEF-LVMRSPHSD-VGSTDDD------- 114
Query: 280 FALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
+ K L+ + I + + G+ +L S +H+D+ N+L+ + VK++D
Sbjct: 115 ------KTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDL 168
Query: 340 G-------SASIKCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
G + K NS + WM+PE I+ G++ D+WS G+ E+
Sbjct: 169 GLFREVYAADYYKLMGNSLLPI-RWMSPEAIMY---GKFSIDSDIWSYGVVLWEV 219
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology
to the N-terminal domain of Wnt inhibitory factor-1
(WIF) and serves as the ligand (Wnt) binding domain of
Ryk. Ryk is expressed in many different tissues both
during development and in adults, suggesting a
widespread function. It acts as a chemorepulsive axon
guidance receptor of Wnt glycoproteins and is
responsible for the establishment of axon tracts during
the development of the central nervous system. In
addition, studies in mice reveal that Ryk is essential
in skeletal, craniofacial, and cardiac development.
Thus, it appears Ryk is involved in signal transduction
despite its lack of kinase activity. Ryk may function as
an accessory protein that modulates the signals coming
from catalytically active partner RTKs such as the Eph
receptors.
Length = 280
Score = 48.2 bits (115), Expect = 8e-06
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 28/124 (22%)
Query: 304 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPY------- 356
+ G++YLH G IH+D+ A N ++ E VK+ D + P + Y
Sbjct: 126 IACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMD------YHCLGDNE 179
Query: 357 -----WMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPY-----FNMNAM-SALY 404
WMA E ++ +Y DVWS G+ EL + PY F M A Y
Sbjct: 180 NRPVKWMALE---SLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGY 236
Query: 405 HIAQ 408
+AQ
Sbjct: 237 RLAQ 240
Score = 47.8 bits (114), Expect = 1e-05
Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 34/161 (21%)
Query: 5 SSLLRQLKHPN-------TIEYRG----CYLRDHTAWLVMEYCLGSASDIIEVHKRPLKE 53
S LL L H N IE Y + W ++ L + + L
Sbjct: 59 SCLLYGLSHQNILPILHVCIEDGEPPFVLY--PYMNWGNLKLFLQQCRLGEANNPQALST 116
Query: 54 EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGT 113
+++ + + G++YLH G IH+D+ A N ++ E VK+ D + P +
Sbjct: 117 QQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMD----- 171
Query: 114 PY------------WMAPEVILAMDEGQYDGKVDVWSLGIT 142
Y WMA E ++ +Y DVWS G+
Sbjct: 172 -YHCLGDNENRPVKWMALE---SLVNKEYSSASDVWSFGVL 208
Score = 33.5 bits (77), Expect = 0.34
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 648 VLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+ G++YLH G IH+D+ A N ++ E VK+
Sbjct: 126 IACGMSYLHKRGVIHKDIAARNCVIDEELQVKI 158
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 48.5 bits (115), Expect = 1e-05
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-S 343
F+ RPL ++ AI +L + Y+H IHRD+K NI L G + L DFG+A
Sbjct: 258 FDWKDRPLLKQ-TRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAMP 316
Query: 344 IKCPANSF----VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
+ +F VGT +PE ILA D Y D+WS G+ +++
Sbjct: 317 FEKEREAFDYGWVGTVATNSPE-ILAGD--GYCEITDIWSCGLILLDM 361
Score = 46.6 bits (110), Expect = 4e-05
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 58 AICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSA-SIKCPANSF----VG 112
AI +L + Y+H IHRD+K NI L G + L DFG+A + +F VG
Sbjct: 271 AIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVG 330
Query: 113 TPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
T +PE ILA D Y D+WS G+
Sbjct: 331 TVATNSPE-ILAGD--GYCEITDIWSCGL 356
Score = 31.2 bits (70), Expect = 2.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 643 AICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
AI +L + Y+H IHRD+K NI L G + L
Sbjct: 271 AIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVL 308
>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine
Kinase, HER4. Protein Tyrosine Kinase (PTK) family;
HER4 (ErbB4); catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER4 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands that bind HER4 fall into two groups,
the neuregulins (or heregulins) and some EGFR (HER1)
ligands including betacellulin, HBEGF, and epiregulin.
All four neuregulins (NRG1-4) interact with HER4. Upon
ligand binding, HER4 forms homo- or heterodimers with
other HER proteins. HER4 is essential in embryonic
development. It is implicated in mammary gland, cardiac,
and neural development. As a postsynaptic receptor of
NRG1, HER4 plays an important role in synaptic
plasticity and maturation. The impairment of NRG1/HER4
signaling may contribute to schizophrenia.
Length = 303
Score = 47.4 bits (112), Expect = 1e-05
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 7 LLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRG 66
++ + HP+ + G L + G D + HK + + + C + +G
Sbjct: 62 IMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKG 121
Query: 67 LNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASI------KCPANSFVGTPYWMAPE 120
+ YL +HRD+ A N+L+ VK+ DFG A + + A+ WMA E
Sbjct: 122 MMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALE 181
Query: 121 VILAMDEGQYDGKVDVWSLGIT 142
I ++ + DVWS G+T
Sbjct: 182 CI---HYRKFTHQSDVWSYGVT 200
Score = 46.6 bits (110), Expect = 3e-05
Identities = 52/235 (22%), Positives = 89/235 (37%), Gaps = 44/235 (18%)
Query: 161 EKIFEDLREIGHGSFGAVYYARCLVSREIVAIK-KMSYLGKQCAEKW-ADILKEIRFLRQ 218
E + ++ +G G+FG VY + E V I + L + K + + E +
Sbjct: 6 ETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMAS 65
Query: 219 LKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTE 278
+ HP+ + G CL ++ +L C +
Sbjct: 66 MDHPHLVRLLGV-------------CLSPTIQLV---------------TQLMPHGCLLD 97
Query: 279 HFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLAD 338
+ HK + + + C + +G+ YL +HRD+ A N+L+ VK+ D
Sbjct: 98 YV-----HEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITD 152
Query: 339 FGSASI------KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
FG A + + A+ WMA E I ++ + DVWS G+T EL
Sbjct: 153 FGLARLLEGDEKEYNADGGKMPIKWMALECI---HYRKFTHQSDVWSYGVTIWEL 204
Score = 30.8 bits (69), Expect = 3.1
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 615 QLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 674
QL+ CL D + HK + + + C + +G+ YL +HRD+ A N+L+
Sbjct: 88 QLMPHGCL---LDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKS 144
Query: 675 TGTVKL 680
VK+
Sbjct: 145 PNHVKI 150
>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 46.7 bits (111), Expect = 4e-05
Identities = 69/268 (25%), Positives = 104/268 (38%), Gaps = 53/268 (19%)
Query: 118 APEVILAMDEGQYDGKVDVWSLGITPGSLKDPEIAELFDKEDPEKIF------EDL---R 168
AP LA+ Y L TPG P ++F E +F +D +
Sbjct: 89 APGAALALLAATY--------LWATPGVA--PGFVDMFVLAPLEGLFRPSFKKDDFVLGK 138
Query: 169 EIGHGSFGAVYYA----RCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHPNT 224
++G G+FG VY A + +KK + G E W N
Sbjct: 139 KLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA--VEIWM---------------NE 181
Query: 225 IEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCF---TEHFA 281
R C + A V + +S + +W+ + E L Q K F E +
Sbjct: 182 RVRRAC--PNSCADFVYGFLEPVSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYL 239
Query: 282 LFNFEVHKRPLKEEE--IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE-TGTVKLAD 338
L + + L+ E I I +L L+ LHS G +HRDVK NI+ +E +G+ K+ D
Sbjct: 240 LGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIID 299
Query: 339 FGSAS-----IKCPANSFVGTPYWMAPE 361
G+A+ I F+ P + APE
Sbjct: 300 LGAAADLRVGINYIPKEFLLDPRYAAPE 327
Score = 46.3 bits (110), Expect = 5e-05
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 32 VMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE-T 90
V Y LG D+ + +R + + I I +L L+ LHS G +HRDVK NI+ +E +
Sbjct: 235 VEPYLLGKVQDLPKGLER--ENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIFSEGS 292
Query: 91 GTVKLADFGSAS-----IKCPANSFVGTPYWMAPE 120
G+ K+ D G+A+ I F+ P + APE
Sbjct: 293 GSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPE 327
Score = 37.8 bits (88), Expect = 0.021
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 614 PQLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
P V Y LG D+ + +R + + I I +L L+ LHS G +HRDVK NI+ +
Sbjct: 232 PYNVEPYLLGKVQDLPKGLER--ENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIFS 289
Query: 674 E-TGTVKL 680
E +G+ K+
Sbjct: 290 EGSGSFKI 297
>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases. Protein
Tyrosine Kinase (PTK) family; Janus kinase (Jak)
subfamily; pseudokinase domain (repeat1). The Jak
subfamily is composed of Jak1, Jak2, Jak3, TYK2, and
similar proteins. The PTKc (catalytic domain) family to
which this subfamily belongs, is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal catalytic tyr
kinase domain. The pseudokinase domain shows similarity
to tyr kinases but lacks crucial residues for catalytic
activity and ATP binding. It modulates the kinase
activity of the C-terminal catalytic domain. Most Jaks
are expressed in a wide variety of tissues, except for
Jak3, which is expressed only in hematopoietic cells.
Jaks are crucial for cytokine receptor signaling. They
are activated by autophosphorylation upon
cytokine-induced receptor aggregation, and subsequently
trigger downstream signaling events such as the
phosphorylation of signal transducers and activators of
transcription (STATs). Jaks are also involved in
regulating the surface expression of some cytokine
receptors. The Jak-STAT pathway is involved in many
biological processes including hematopoiesis,
immunoregulation, host defense, fertility, lactation,
growth, and embryogenesis.
Length = 259
Score = 43.6 bits (103), Expect = 2e-04
Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 6 SLLRQLKHPNTIEYRGCYLRDHTAWLVMEYC-LGSASDIIEVHKRPLKEEEIAAICSGVL 64
SL+ QL H + ++ G +RD +V EY G + K + + +
Sbjct: 53 SLMSQLSHKHLVKLYGVCVRDENI-MVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLA 111
Query: 65 RGLNYLHSLGRIHRDVKAGNILLTETGT-------VKLADFGSASIKCPANSFVGTPYWM 117
L+YL +H +V NIL+ G +KL+D G V W+
Sbjct: 112 SALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREERVERIPWI 171
Query: 118 APEVILAMDEGQYDGKVDVWSLGIT 142
APE I + D WS G T
Sbjct: 172 APECI-RNGQASLTIAADKWSFGTT 195
Score = 36.3 bits (84), Expect = 0.044
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 303 GVLRGLNYLHSLGRIHRDVKAGNILLTETGT-------VKLADFGSASIKCPANSFVGTP 355
+ L+YL +H +V NIL+ G +KL+D G V
Sbjct: 109 QLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREERVERI 168
Query: 356 YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFN 396
W+APE I + D WS G T +E+ +
Sbjct: 169 PWIAPECI-RNGQASLTIAADKWSFGTTLLEICSNGEEPLS 208
Score = 29.0 bits (65), Expect = 9.9
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 647 GVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLDTPD 684
+ L+YL +H +V NIL+ G + P
Sbjct: 109 QLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPF 146
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 41.2 bits (97), Expect = 4e-04
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 18 EYRGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIH 77
+ D ++L+ME+ G D + ++ E++A + L L+ L L H
Sbjct: 57 KVLASGESDGWSYLLMEWIEGETLDEVSEEEKEDIAEQLAEL----LAKLHQLPLLVLCH 112
Query: 78 RDVKAGNILLTETGTVKLADFGSASIKCPA 107
D+ GNIL+ + + + D+ A PA
Sbjct: 113 GDLHPGNILVDDGKILGIIDWEYAGYGPPA 142
Score = 38.9 bits (91), Expect = 0.003
Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 39/147 (26%)
Query: 204 EKWADILKEIRFLRQLKHPNTI--EYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREF 261
EK AD +E+ L+ L + D ++L+ME+ IE ++
Sbjct: 33 EKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEW--------IEGETLDEVS 84
Query: 262 HVEGMGNRLQQLKCFTEHFALFNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDV 321
E + + E A ++H+ PL VL H D+
Sbjct: 85 EEE----KEDIAEQLAELLA----KLHQLPLL----------VL-----------CHGDL 115
Query: 322 KAGNILLTETGTVKLADFGSASIKCPA 348
GNIL+ + + + D+ A PA
Sbjct: 116 HPGNILVDDGKILGIIDWEYAGYGPPA 142
Score = 28.5 bits (64), Expect = 7.6
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
L+ME+ G D + ++ E++A + L L+ L L H D+ GNIL+ +
Sbjct: 70 LLMEWIEGETLDEVSEEEKEDIAEQLAEL----LAKLHQLPLLVLCHGDLHPGNILVDDG 125
Query: 676 GTVKL 680
+ +
Sbjct: 126 KILGI 130
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 43.3 bits (102), Expect = 6e-04
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 17/131 (12%)
Query: 6 SLLRQLKHPNTIEY--RGCYLRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGV 63
+L +L HPN + G + V EY G + L E + V
Sbjct: 30 ALCARLYHPNIVALLDSG-EAPPGLLFAVFEYVPGRTLREVLAADGALPAGETGRLMLQV 88
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGT---VKLADFG-----------SASIKCPANS 109
L L H+ G +HRD+K NI++++TG K+ DFG +
Sbjct: 89 LDALACAHNQGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRDADVATLTRTTE 148
Query: 110 FVGTPYWMAPE 120
+GTP + APE
Sbjct: 149 VLGTPTYCAPE 159
Score = 42.1 bits (99), Expect = 0.001
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 291 PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGT---VKLADFG------- 340
L E + VL L H+ G +HRD+K NI++++TG K+ DFG
Sbjct: 75 ALPAGETGRLMLQVLDALACAHNQGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPG 134
Query: 341 ----SASIKCPANSFVGTPYWMAPE 361
+ +GTP + APE
Sbjct: 135 VRDADVATLTRTTEVLGTPTYCAPE 159
Score = 35.2 bits (81), Expect = 0.15
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 635 PLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETG 676
L E + VL L H+ G +HRD+K NI++++TG
Sbjct: 75 ALPAGETGRLMLQVLDALACAHNQGIVHRDLKPQNIMVSQTG 116
>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 2.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
LATS2 is an essential mitotic regulator responsible for
coordinating accurate cytokinesis completion and
governing the stabilization of other mitotic regulators.
It is also critical in the maintenance of proper
chromosome number, genomic stability, mitotic fidelity,
and the integrity of centrosome duplication.
Downregulation of LATS2 is associated with poor
prognosis in acute lymphoblastic leukemia and breast
cancer.
Length = 381
Score = 42.7 bits (100), Expect = 6e-04
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 345 KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYF 395
+C A+S VGTP ++APEV+L Y D WS+G+ E+ +PP+
Sbjct: 202 RCLAHSLVGTPNYIAPEVLL---RKGYTQLCDWWSVGVILFEMLVGQPPFL 249
Score = 40.4 bits (94), Expect = 0.003
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 33/178 (18%)
Query: 163 IFEDLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQLKHP 222
+F ++ +G G+FG V A + + + A+K + + A + E L + +
Sbjct: 2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNE 61
Query: 223 NTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFAL 282
++ + + VM+Y G M + L +++ F E A
Sbjct: 62 WVVKLYYSFQDKDNLYFVMDYIPGG-----------------DMMSLLIRMEVFPEVLAR 104
Query: 283 FNFEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
F E AI S +H +G IHRD+K NIL+ G +KL DFG
Sbjct: 105 FYIA--------ELTLAIES--------VHKMGFIHRDIKPDNILIDLDGHIKLTDFG 146
Score = 39.2 bits (91), Expect = 0.008
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 70 LHSLGRIHRDVKAGNILLTETGTVKLADFG 99
+H +G IHRD+K NIL+ G +KL DFG
Sbjct: 117 VHKMGFIHRDIKPDNILIDLDGHIKLTDFG 146
Score = 35.4 bits (81), Expect = 0.10
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 104 KCPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 141
+C A+S VGTP ++APEV+L Y D WS+G+
Sbjct: 202 RCLAHSLVGTPNYIAPEVLL---RKGYTQLCDWWSVGV 236
Score = 31.9 bits (72), Expect = 1.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 655 LHSLGRIHRDVKAGNILLTETGTVKL 680
+H +G IHRD+K NIL+ G +KL
Sbjct: 117 VHKMGFIHRDIKPDNILIDLDGHIKL 142
>gnl|CDD|223554 COG0478, COG0478, RIO-like serine/threonine protein kinase fused to
N-terminal HTH domain [Signal transduction mechanisms].
Length = 304
Score = 40.8 bits (96), Expect = 0.002
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 31 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 90
+VMEY G +E+++ L E I +L + + G +H D+ NIL+TE
Sbjct: 184 VVMEYIEG-----VELYRLRLDVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTED 238
Query: 91 GTVKLADF 98
G + + D+
Sbjct: 239 GDIVVIDW 246
Score = 37.3 bits (87), Expect = 0.027
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 285 FEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADF 339
E+++ L E I +L + + G +H D+ NIL+TE G + + D+
Sbjct: 192 VELYRLRLDVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTEDGDIVVIDW 246
Score = 36.9 bits (86), Expect = 0.032
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTET 675
+VMEY G +E+++ L E I +L + + G +H D+ NIL+TE
Sbjct: 184 VVMEYIEG-----VELYRLRLDVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTED 238
Query: 676 GTVKL 680
G + +
Sbjct: 239 GDIVV 243
>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Janus kinase 1. Protein
Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak1 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak1 is widely expressed in
many tissues. Many cytokines are dependent on Jak1 for
signaling, including those that use the shared receptor
subunits common gamma chain (IL-2, IL-4, IL-7, IL-9,
IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M,
G-CSF, and IFNs, among others). The many varied
interactions of Jak1 and its ubiquitous expression
suggest many biological roles. Jak1 is important in
neurological development, as well as in lymphoid
development and function. It also plays a role in the
pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 262
Score = 38.8 bits (90), Expect = 0.008
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 12/147 (8%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDIIEVHKR--PLKEEEIAAICSG 62
+S++RQ+ H + + G +RD +V E+ D+ +H++ L +
Sbjct: 55 ASMMRQVSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLF-MHRKSDVLTTPWKFKVAKQ 113
Query: 63 VLRGLNYLHSLGRIHRDVKAGNILLTETGT-------VKLADFGSASIKCPANSFVGTPY 115
+ L+YL +H +V NILL G +KL+D G V
Sbjct: 114 LASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSRQECVERIP 173
Query: 116 WMAPEVILAMDEGQYDGKVDVWSLGIT 142
W+APE + D D WS G T
Sbjct: 174 WIAPECV--EDSKNLSIAADKWSFGTT 198
Score = 29.5 bits (66), Expect = 6.8
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 308 LNYLHSLGRIHRDVKAGNILLTETGT-------VKLADFGSASIKCPANSFVGTPYWMAP 360
L+YL +H +V NILL G +KL+D G V W+AP
Sbjct: 118 LSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSRQECVERIPWIAP 177
Query: 361 EVILAMDEGQYDGKVDVWSLGITCIEL 387
E + D D WS G T E+
Sbjct: 178 ECV--EDSKNLSIAADKWSFGTTLWEI 202
>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein
Serine/Threonine Kinases, RPK118 and similar proteins.
Serine/Threonine Kinases (STKs), RPK118-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RPK118-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily show similarity to
human RPK118, which contains an N-terminal Phox homology
(PX) domain, a Microtubule Interacting and Trafficking
(MIT) domain, and a kinase domain containing a long
insert. Also included in the family is human RPK60 (or
ribosomal protein S6 kinase-like 1), which also contains
MIT and kinase domains but lacks a PX domain. RPK118
binds sphingosine kinase, a key enzyme in the synthesis
of sphingosine 1-phosphate (SPP), a lipid messenger
involved in many cellular events. RPK118 may be involved
in transmitting SPP-mediated signaling. RPK118 also
binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118
may be involved in the transport of PRDX3 from the
cytoplasm to its site of function in the mitochondria.
Length = 237
Score = 37.5 bits (87), Expect = 0.016
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 292 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPA--N 349
+ EE + + ++ L+ LH G + RD+ NILL + G ++L F S +
Sbjct: 82 IPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDG 141
Query: 350 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 387
V Y APEV +E + D WSLG EL
Sbjct: 142 EAVENMY-CAPEVGGISEETE---ACDWWSLGAILFEL 175
Score = 37.5 bits (87), Expect = 0.017
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 14 PNTIEYRGCYLRDHTAWLVMEYCLGSA--SDIIEVHKRPLKEEEIAAICSGVLRGLNYLH 71
PN + + + + +LV+++ G S I + P EE + + ++ L+ LH
Sbjct: 45 PNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFLNIP--EECVKRWAAEMVVALDALH 102
Query: 72 SLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPA--NSFVGTPYWMAPEVILAMDEGQ 129
G + RD+ NILL + G ++L F S + V Y APEV +E +
Sbjct: 103 REGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMY-CAPEVGGISEETE 161
Query: 130 YDGKVDVWSLG 140
D WSLG
Sbjct: 162 ---ACDWWSLG 169
Score = 29.8 bits (67), Expect = 4.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 636 LKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKL 680
+ EE + + ++ L+ LH G + RD+ NILL + G ++L
Sbjct: 82 IPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQL 126
>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tyk2 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Tyk2 is widely expressed in
many tissues. It is involved in signaling via the
cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12,
IL-13, and IL-23. It mediates cell surface urokinase
receptor (uPAR) signaling and plays a role in modulating
vascular smooth muscle cell (VSMC) functional behavior
in response to injury. Tyk2 is also important in
dendritic cell function and T helper (Th)1 cell
differentiation. A homozygous mutation of Tyk2 was found
in a patient with hyper-IgE syndrome (HIES), a primary
immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 274
Score = 37.2 bits (86), Expect = 0.021
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 308 LNYLHSLGRIHRDVKAGNILLTETGT-------VKLADFGSASIKCPANSFVGTPYWMAP 360
L+YL +H +V A NILL G +KL+D G + V W+AP
Sbjct: 130 LSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAP 189
Query: 361 EVILAMDEGQYDGKVDVWSLGITCIE--------LAERKPP 393
E + D WS G T +E L ER P
Sbjct: 190 ECV--PGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPS 228
Score = 34.1 bits (78), Expect = 0.21
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 10/146 (6%)
Query: 5 SSLLRQLKHPNTIEYRGCYLRDHTAWLVMEYCLGSASDI-IEVHKRPLKEEEIAAICSGV 63
+SL+ Q+ H + G +R +V E+ D+ + K + + +
Sbjct: 67 ASLMSQVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQL 126
Query: 64 LRGLNYLHSLGRIHRDVKAGNILLTETGT-------VKLADFGSASIKCPANSFVGTPYW 116
L+YL +H +V A NILL G +KL+D G + V W
Sbjct: 127 ASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPW 186
Query: 117 MAPEVILAMDEGQYDGKVDVWSLGIT 142
+APE + D WS G T
Sbjct: 187 IAPECV--PGGNSLSTAADKWSFGTT 210
>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional.
Length = 294
Score = 36.9 bits (85), Expect = 0.031
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 14/125 (11%)
Query: 297 IAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS-----------IK 345
I I +L L Y+H G H D+K NI++ + D+G AS K
Sbjct: 128 IKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSK 187
Query: 346 CPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPYFNMNAMSALYH 405
+ GT Y+ + A + + D+ SLG ++ A K P+ L H
Sbjct: 188 EQKDLHRGTLYYAGLD---AHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIH 244
Query: 406 IAQND 410
A+ D
Sbjct: 245 AAKCD 249
Score = 33.8 bits (77), Expect = 0.31
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 8 LRQLKHPNTIEYRGC----YLRDHTAWLVMEYCLGSASDI---IEVHKRPLKEEEIAAIC 60
+ + H +Y GC R + ++++E + + +I I+ + L I I
Sbjct: 77 IHNIDHLGIPKYYGCGSFKRCRMYYRFILLEKLVENTKEIFKRIKCKNKKL----IKNIM 132
Query: 61 SGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSAS 102
+L L Y+H G H D+K NI++ + D+G AS
Sbjct: 133 KDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIAS 174
>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional.
Length = 211
Score = 36.0 bits (84), Expect = 0.037
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 31 LVMEYCLG-SASDIIEVHKRPLKE--EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 87
+VMEY G D+I + E EI G L G LHS G IH D+ N++L
Sbjct: 76 IVMEYIEGEPLKDLINSNGMEELELSREI-----GRLVGK--LHSAGIIHGDLTTSNMIL 128
Query: 88 TETGTVKLADFG 99
+ G + L DFG
Sbjct: 129 SG-GKIYLIDFG 139
Score = 30.3 bits (69), Expect = 2.9
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 616 LVMEYCLG-SASDIIEVHKRPLKE--EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
+VMEY G D+I + E EI G L G LHS G IH D+ N++L
Sbjct: 76 IVMEYIEGEPLKDLINSNGMEELELSREI-----GRLVGK--LHSAGIIHGDLTTSNMIL 128
Query: 673 TE 674
+
Sbjct: 129 SG 130
Score = 29.9 bits (68), Expect = 4.3
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 287 VHKRPLKE------EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
+ PLK+ E + + R + LHS G IH D+ N++L+ G + L DFG
Sbjct: 81 IEGEPLKDLINSNGMEELELSREIGRLVGKLHSAGIIHGDLTTSNMILSG-GKIYLIDFG 139
>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; pseudokinase domain (repeat 1). The
PTKc (catalytic domain) family to which this subfamily
belongs, is part of a larger superfamily that includes
the catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal tyr kinase domain. The pseudokinase
domain shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak2 is widely expressed in
many tissues while Jak3 is expressed only in
hematopoietic cells. Jak2 is essential for the signaling
of hormone-like cytokines such as growth hormone,
erythropoietin, thrombopoietin, and prolactin, as well
as some IFNs and cytokines that signal through the IL-3
and gp130 receptors. Jak3 binds the shared receptor
subunit common gamma chain and thus, is essential in the
signaling of cytokines that use it such as IL-2, IL-4,
IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice
results in an embryonic lethal phenotype with multiple
defects including erythropoietic and cardiac
abnormalities. It is the only Jak gene that results in a
lethal phenotype when disrupted in mice. A mutation in
the pseudokinase domain of Jak2, V617F, is present in
many myeloproliferative diseases, including almost all
patients with polycythemia vera, and 50% of patients
with essential thrombocytosis and myelofibrosis. Jak3 is
important in lymphoid development and myeloid cell
differentiation. Inactivating mutations in Jak3 have
been reported in humans with severe combined
immunodeficiency (SCID).
Length = 258
Score = 34.4 bits (79), Expect = 0.17
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 308 LNYLHSLGRIHRDVKAGNILLT-----ETGT---VKLADFGSASIKCPANSFVGTPYWMA 359
L++L G H +V A N+LL +TG +KL+D G + P + W+
Sbjct: 113 LHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLERIPWVP 172
Query: 360 PEVILAMDEGQYDGKVDVWSLGITCIEL 387
PE I + D WS G T E+
Sbjct: 173 PECI--ENPQNLSLAADKWSFGTTLWEI 198
Score = 33.7 bits (77), Expect = 0.29
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 67 LNYLHSLGRIHRDVKAGNILLT-----ETGT---VKLADFGSASIKCPANSFVGTPYWMA 118
L++L G H +V A N+LL +TG +KL+D G + P + W+
Sbjct: 113 LHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLERIPWVP 172
Query: 119 PEVILAMDEGQYDGKVDVWSLGIT 142
PE I + D WS G T
Sbjct: 173 PECI--ENPQNLSLAADKWSFGTT 194
>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region. SelP is the
only known eukaryotic selenoprotein that contains
multiple selenocysteine (Sec) residues, and accounts for
more than 50% of the selenium content of rat and human
plasma. It is thought to be glycosylated. SelP may have
antioxidant properties. It can attach to epithelial
cells, and may protect vascular endothelial cells
against peroxynitrite toxicity. The high selenium
content of SelP suggests that it may be involved in
selenium intercellular transport or storage. The
promoter structure of bovine SelP suggest that it may be
involved in countering heavy metal intoxication, and may
also have a developmental function. The N-terminal
region of SelP can exist independently of the C terminal
region. Zebrafish selenoprotein Pb lacks the C terminal
Sec-rich region, and a protein encoded by the rat SelP
gene and lacking this region has also been reported.
N-terminal region contains a conserved SecxxCys motif,
which is similar to the CysxxCys found in thioredoxins.
It is speculated that the N terminal region may adopt a
thioredoxin fold and catalyze redox reactions. The
N-terminal region also contains a His-rich region, which
is thought to mediate heparin binding. Binding to
heparan proteoglycans could account for the membrane
binding properties of SelP. The function of the
bacterial members of this family is uncharcterised.
Length = 238
Score = 33.3 bits (76), Expect = 0.42
Identities = 16/67 (23%), Positives = 25/67 (37%)
Query: 544 DEQAGNDSSKSNSITSEHSVQSVGVGVNPHDPTPNSSSQAHNRHHHHHPVTHLSQHSYNN 603
+ + GN S S E ++ P + P H+ HH H H H +++
Sbjct: 148 ERKCGNCSLTSLEDEDECKKVTLATVNKPVEAEPRQDHPHHHSHHEHQGHAHHHPHGHHH 207
Query: 604 NNSNYSS 610
SN S
Sbjct: 208 PGSNSHS 214
Score = 29.5 bits (66), Expect = 6.4
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 690 DSSKSNSITSEHSVQSVGVGVNPHDPTPNS-----SSQAHNRHHHHHP 732
D + +T + V P +S H+ H HHHP
Sbjct: 161 DEDECKKVTLATVNKPVEAEPRQDHPHHHSHHEHQGHAHHHPHGHHHP 208
>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32. Members of
this protein family are the Bud32 protein associated
with Kae1 (kinase-associated endopeptidase 1) in the
Archaea. In many Archaeal genomes, Kae1 and Bud32 are
fused. The complex is homologous to the Kae1 and Bud32
subunits of the eukaryotic KEOPS complex, an apparently
ancient protein kinase-containing molecular machine
[Unknown function, General].
Length = 199
Score = 32.6 bits (75), Expect = 0.52
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 31 LVMEYCLGSASDIIEVHKRPLK---EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 87
+VMEY + +PLK EE + + R + LH G +H D+ NI++
Sbjct: 74 IVMEY----------IEGKPLKDVIEEGNDELLREIGRLVGKLHKAGIVHGDLTTSNIIV 123
Query: 88 TETGTVKLADFG 99
+ L DFG
Sbjct: 124 RDDKLY-LIDFG 134
Score = 29.5 bits (67), Expect = 5.2
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query: 616 LVMEYCLGSASDIIEVHKRPLK---EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILL 672
+VMEY + +PLK EE + + R + LH G +H D+ NI++
Sbjct: 74 IVMEY----------IEGKPLKDVIEEGNDELLREIGRLVGKLHKAGIVHGDLTTSNIIV 123
Query: 673 TETGTVKLD 681
+ +D
Sbjct: 124 RDDKLYLID 132
Score = 28.7 bits (65), Expect = 9.3
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 286 EVHKRPLK---EEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
+ +PLK EE + + R + LH G +H D+ NI++ + L DFG
Sbjct: 78 YIEGKPLKDVIEEGNDELLREIGRLVGKLHKAGIVHGDLTTSNIIVRDDKLY-LIDFG 134
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 32.9 bits (76), Expect = 0.68
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 31 LVMEYCLGSASDIIEVHKRPLKE--EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 88
+VMEY + + LK+ E + V + LH G +H D+ N ++
Sbjct: 413 IVMEY----------IGGKDLKDVLEGNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIVR 462
Query: 89 ETGTVKLADFG 99
+ L DFG
Sbjct: 463 DDRLY-LIDFG 472
Score = 31.0 bits (71), Expect = 2.7
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 286 EVHKRPLKE--EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFG 340
+ + LK+ E + V + LH G +H D+ N ++ + L DFG
Sbjct: 417 YIGGKDLKDVLEGNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIVRDDRLY-LIDFG 472
Score = 29.9 bits (68), Expect = 5.9
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 616 LVMEYCLGSASDIIEVHKRPLKE--EEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT 673
+VMEY + + LK+ E + V + LH G +H D+ N ++
Sbjct: 413 IVMEY----------IGGKDLKDVLEGNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIVR 462
Query: 674 ETGTVKLD 681
+ +D
Sbjct: 463 DDRLYLID 470
>gnl|CDD|237859 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional.
Length = 1000
Score = 32.3 bits (74), Expect = 1.1
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 24 LRDHTAWLVMEYCLGSASDIIEVHKRPLKEEEIAAICSGVLRGL-NYLHSLGRIHRDVKA 82
LR A L +E L + +KE + + V L L LG ++ A
Sbjct: 806 LRATPASLDLEDLLARLARHFPSTTVWVKEAVLDEVLEFVWGRLKTQLLDLGFDKDEIAA 865
>gnl|CDD|140276 PTZ00249, PTZ00249, variable surface protein Vir28; Provisional.
Length = 516
Score = 31.9 bits (72), Expect = 1.4
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 553 KSNSITSEHSVQSVGVGVNPHDPTPNSSSQAHNRH----HHHHPVTHLSQHSYNNNNSNY 608
K S +S H+ V P +P SS QAH RH H VT S +++ N
Sbjct: 241 KHISFSSPHAHGRPPVETRPPNPVSVSSPQAHGRHPGETHTPPLVTVPSSKAHDRNPVQT 300
Query: 609 SSLFSPQLVMEY 620
+P V Y
Sbjct: 301 P---TPTSVSGY 309
>gnl|CDD|225213 COG2334, COG2334, Putative homoserine kinase type II (protein
kinase fold) [General function prediction only].
Length = 331
Score = 31.5 bits (72), Expect = 1.6
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 40 ASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT-ETGTVKLADF 98
+ R + + + + L L IH D+ N+L +T DF
Sbjct: 165 LDLVEPEDLRAALLAALDRLLARLPAHLPAL-GDQIIHGDLHPDNVLFDDDTDVSGFIDF 223
Query: 99 GSA 101
A
Sbjct: 224 DDA 226
Score = 29.2 bits (66), Expect = 9.9
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 288 HKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLT-ETGTVKLADFGSA 342
R + + + + L L IH D+ N+L +T DF A
Sbjct: 172 DLRAALLAALDRLLARLPAHLPAL-GDQIIHGDLHPDNVLFDDDTDVSGFIDFDDA 226
>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family,
PDC_IPDC subfamily, TPP-binding module; composed of
proteins similar to pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC, a key enzyme
in alcoholic fermentation, catalyzes the conversion of
pyruvate to acetaldehyde and CO2. It is able to utilize
other 2-oxo acids as substrates. In plants and various
plant-associated bacteria, IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway, a
tryptophan-dependent biosynthetic route to
indole-3-acetaldehyde (IAA). IPDC catalyzes the
decarboxylation of IPA to IAA. Both PDC and IPDC depend
on TPP and Mg2+ as cofactors.
Length = 183
Score = 31.0 bits (71), Expect = 1.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 75 RIHRDVKAGNILLTETGTVKLADFGSASIKCPANS-FVGTPYW 116
++ +K +IL+ ETGT + FG+ +K P + F+ P W
Sbjct: 10 QVQNFLKPNDILVAETGT---SWFGALDLKLPKGTRFISQPLW 49
Score = 31.0 bits (71), Expect = 1.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 316 RIHRDVKAGNILLTETGTVKLADFGSASIKCPANS-FVGTPYW 357
++ +K +IL+ ETGT + FG+ +K P + F+ P W
Sbjct: 10 QVQNFLKPNDILVAETGT---SWFGALDLKLPKGTRFISQPLW 49
>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function
prediction only].
Length = 517
Score = 31.5 bits (72), Expect = 1.9
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 31 LVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTE 89
L ME+ G SDI + + +E+A + V L L G H D GNIL+
Sbjct: 243 LTMEWIDGIKISDIAALKSAGIDRKELAEL--LVRAFLRQLLRDGFFHADPHPGNILVRS 300
Query: 90 TGTVKLADFG 99
G + L DFG
Sbjct: 301 DGRIVLLDFG 310
>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family. This family
consists of bacterial antibiotic resistance proteins,
which confer resistance to various aminoglycosides they
include: aminoglycoside 3'-phosphotransferase or
kanamycin kinase / neomycin-kanamycin phosphotransferase
and streptomycin 3''-kinase or streptomycin
3''-phosphotransferase. The aminoglycoside
phosphotransferases inactivate aminoglycoside
antibiotics via phosphorylation. This family also
includes homoserine kinase. This family is related to
fructosamine kinase pfam03881.
Length = 238
Score = 30.6 bits (69), Expect = 2.8
Identities = 37/204 (18%), Positives = 64/204 (31%), Gaps = 33/204 (16%)
Query: 166 DLREIGHGSFGAVYYARCLVSREIVAIKKMSYLGKQCAEKWADILKEIRFLRQL--KHPN 223
LR + G+ Y R ++ + AE ++ +E+ LR L
Sbjct: 1 TLRPLSGGASNRTYLVGTGDGRYVLKLAP-------PAEAAEELRRELALLRHLAAAGIP 53
Query: 224 TIEYRGCYLRDH---TAWLVMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHF 280
+L+ME G ER +E + L +L
Sbjct: 54 VPRVLAGGTDGGGLGLPFLLMEGLPGEVLTRPLDP-AERGALLEALARLLARLHSVPPEA 112
Query: 281 ALFNFEVHKRPLKEEEIAAICSGVL-------------RGLNYLHSL------GRIHRDV 321
+ +R ++AA ++ R L L +L +H D+
Sbjct: 113 LPLARRLRRRLKLLRQLAAALRRLVAAELLDRLAELWERLLAALLALLPALPLVLVHGDL 172
Query: 322 KAGNILLTETGTVK-LADFGSASI 344
GN+L+ G V + DF A +
Sbjct: 173 HPGNLLVDPGGRVTGVIDFEDAGL 196
Score = 29.5 bits (66), Expect = 6.1
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 73 LGRIHRDVKAGNILLTETGTVK-LADFGSASI 103
L +H D+ GN+L+ G V + DF A +
Sbjct: 165 LVLVHGDLHPGNLLVDPGGRVTGVIDFEDAGL 196
>gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine
pyrophosphate-requiring enzymes [Carbohydrate transport
and metabolism / Coenzyme metabolism / General function
prediction only].
Length = 557
Score = 30.8 bits (70), Expect = 3.1
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 80 VKAGNILLTETGTVKLADFGSASIKCPANS-FVGTPYW 116
+K G++++ ETGT + FG+ I+ P + F+ P W
Sbjct: 376 LKPGDVIIAETGT---SFFGALDIRLPKGATFISQPLW 410
Score = 30.8 bits (70), Expect = 3.1
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 321 VKAGNILLTETGTVKLADFGSASIKCPANS-FVGTPYW 357
+K G++++ ETGT + FG+ I+ P + F+ P W
Sbjct: 376 LKPGDVIIAETGT---SFFGALDIRLPKGATFISQPLW 410
>gnl|CDD|234975 PRK01723, PRK01723, 3-deoxy-D-manno-octulosonic-acid kinase;
Reviewed.
Length = 239
Score = 30.2 bits (69), Expect = 3.2
Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 25/110 (22%)
Query: 240 VMEYCLGSASDIIEVHWIEREFHVEGMGNRLQQLKCFTEHFALFNFEVHKRPLKEEEIAA 299
V+ + L +DI+ IER + LQ + PL EE+ A
Sbjct: 112 VVRHGLFYRADIL----IERIEGARDLVALLQ-----------------EAPLSEEQWQA 150
Query: 300 ICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPAN 349
I + R H G H D+ A NILL G L DF ++ P
Sbjct: 151 IGQLIAR----FHDAGVYHADLNAHNILLDPDGKFWLIDFDRGELRTPTR 196
Score = 30.2 bits (69), Expect = 3.5
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 48 KRPLKEEEIAAICSGVLRGLNYLHSLGRIHRDVKAGNILLTETGTVKLADFGSASIKCPA 107
+ PL EE+ AI + R H G H D+ A NILL G L DF ++ P
Sbjct: 140 EAPLSEEQWQAIGQLIAR----FHDAGVYHADLNAHNILLDPDGKFWLIDFDRGELRTPT 195
Query: 108 N 108
Sbjct: 196 R 196
>gnl|CDD|223584 COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme
transport and metabolism].
Length = 269
Score = 30.4 bits (69), Expect = 3.4
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 76 IHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPYW 116
H D+ GN+LLT+ G + L D+ A + P +
Sbjct: 156 CHNDLNPGNLLLTDKGGLFLIDWEYAG--------LNDPAF 188
Score = 30.4 bits (69), Expect = 3.4
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 317 IHRDVKAGNILLTETGTVKLADFGSASIKCPANSFVGTPYW 357
H D+ GN+LLT+ G + L D+ A + P +
Sbjct: 156 CHNDLNPGNLLLTDKGGLFLIDWEYAG--------LNDPAF 188
>gnl|CDD|178071 PLN02452, PLN02452, phosphoserine transaminase.
Length = 365
Score = 30.4 bits (69), Expect = 4.2
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 127 EGQYDGKVD--VWSLGITPGSLKDPEIAELFDKEDPEKIFEDLREIGHGSFGAV 178
G Y V+ V SL P +L E+ F KE + L+ GH S G +
Sbjct: 286 NGFYVCPVEKSVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLK--GHRSVGGM 337
>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional.
Length = 283
Score = 30.1 bits (68), Expect = 4.6
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 307 GLNYLH-SLGRIHRDVKAGNILLTETGTVKLADFGSASI-KCPANSFVGTPYWMAPEVIL 364
GL L+ + ++++ + + L+TE +K+ G I P V + + +++
Sbjct: 134 GLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLN 193
Query: 365 AMDEGQYDGKVDVWSLGITCIELAERKPPYFNM 397
+ +Y K D++SLG+ E+ K P+ N+
Sbjct: 194 DIFS-EYTIKDDIYSLGVVLWEIFTGKIPFENL 225
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 30.2 bits (68), Expect = 5.7
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 8 LRQLKHPNTIEYRGCYLRDHTAWLVMEYCLG-SASDIIEVHKRPLKEEEIAAICSGVLRG 66
+ +L+HPN ++ G + A+L+ EY G + S+++ R L E I G+ +
Sbjct: 737 MGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVL----RNLSWERRRKIAIGIAKA 792
Query: 67 LNYLH 71
L +LH
Sbjct: 793 LRFLH 797
>gnl|CDD|225546 COG3000, ERG3, Sterol desaturase [Lipid metabolism].
Length = 271
Score = 29.7 bits (67), Expect = 5.8
Identities = 6/37 (16%), Positives = 9/37 (24%), Gaps = 6/37 (16%)
Query: 584 HNRHHHH------HPVTHLSQHSYNNNNSNYSSLFSP 614
P H HS + + NY +
Sbjct: 190 LPLPLGWLRYVFNTPRHHRLHHSKDPYDKNYGVTLTF 226
>gnl|CDD|238744 cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A
(vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses. In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Members of this subgroup are bacterial in
origin. They are typified by the presence of a MIDAS
motif.
Length = 180
Score = 29.2 bits (66), Expect = 6.6
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 510 AVRDLDNLNYRKMKKILMADGADTESTIDPDDTPDEQAGNDSSKSNSITSEHSVQSVGVG 569
A++ L N ++ +L+ DG + IDP A + +K+ + + ++GVG
Sbjct: 92 AIKRLKNSEAKERVIVLLTDGENNAGEIDPA-----TAA-ELAKNKGVR----IYTIGVG 141
Query: 570 VNPHDPTPNSSS 581
+ P P+ S+
Sbjct: 142 KSGSGPKPDGST 153
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 29.9 bits (67), Expect = 6.8
Identities = 36/201 (17%), Positives = 59/201 (29%), Gaps = 29/201 (14%)
Query: 538 DPDDTPDEQAGNDSSKSNSITSEHSVQSVGVGVNPHDPTPNSSSQAH--NRHHHHHPVTH 595
+S+S S G H + SS R + P+TH
Sbjct: 43 PISIRNGADNDIINSESKE--------SFGKYALGHQIFSSFSSSPKLFQRRNSAGPITH 94
Query: 596 LSQ--HSYNNNNSNYSSLFSPQLVMEYCLGSASDIIEVHK--RPLKEEEIAAICSGVLRG 651
S ++ NSN FSP ASD + + +++ S V +
Sbjct: 95 SPSATSSTSSLNSNDGDQFSP----------ASDSLSFNPSSTQSRKDSGPGDGSPVQKR 144
Query: 652 LNYLHSLGRIHRDVKAGNILLTETGTVKLDTPDEQAGNDSSKSNSITSE-HSVQSVGVGV 710
N L H I+ T+ P+ ++ + S + + S
Sbjct: 145 KNPLLPSSSTH--GTHPPIVFTDNNGSHAGAPNARSRKEIPSLGSQSMQLPSPHFRQKFS 202
Query: 711 NPHDPTPNSSSQAHNRHHHHH 731
+ T N S R + H
Sbjct: 203 SSD--TSNGFSYPSIRKNSRH 221
>gnl|CDD|204097 pfam08926, DUF1908, Domain of unknown function (DUF1908). This
domain is found in a set of hypothetical/structural
eukaryotic proteins.
Length = 282
Score = 29.5 bits (66), Expect = 7.9
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 12/111 (10%)
Query: 392 PPYFNMNAMSALYHIAQNDTPCLQSSD---WSVIKTISSTAERKPPYFNMNAMSALYHIA 448
P F+ +A + A+ +D WSV SS PP +++ S+
Sbjct: 5 PRNFSASAS-INFPFARRIASRRGRADGRRWSVASLPSSGYGTNPPSSTVSSSSSSQERL 63
Query: 449 QNDTPCLQSSDWSDTFAHFVSSCLAKNPADRPSSGRLLTHDLVTRPRSPSV 499
D HF S+ + R S RPRS S+
Sbjct: 64 HQLPFQPTQDDLHFLSKHFRSTESVTDEDGRRSP--------HFRPRSRSL 106
>gnl|CDD|236852 PRK11119, proX, glycine betaine transporter periplasmic subunit;
Provisional.
Length = 331
Score = 29.1 bits (66), Expect = 8.4
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 140 GITP-GSLKDPEIAELFD 156
IT LKDP+IA+LFD
Sbjct: 128 NITNIAQLKDPKIAKLFD 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.407
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,530,855
Number of extensions: 4095043
Number of successful extensions: 6366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5166
Number of HSP's successfully gapped: 1193
Length of query: 804
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 699
Effective length of database: 6,280,432
Effective search space: 4390021968
Effective search space used: 4390021968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.1 bits)