BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17953
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q95V32|RS6_SPOFR 40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1
Length = 253
Score = 240 bits (612), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 135/185 (72%), Positives = 156/185 (84%), Gaps = 3/185 (1%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+NLSVLALV+VRKGEQEIPGLTD +PR
Sbjct: 72 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQEIPGLTDGNVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRASKIRKLFNLSKEDDVR+YV+KR L PAKEGK+ + YKAPKIQRL+TPV
Sbjct: 132 RLGPKRASKIRKLFNLSKEDDVRRYVVKRLL---PAKEGKENAKPRYKAPKIQRLVTPVV 188
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
LQR+RH LALKK+R KRK+ +YAKLLA R KE K +++E KRRRS+S+R S +S +
Sbjct: 189 LQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKESKVRRQEELKRRRSASMRDSKSSDK 248
Query: 195 PAAKK 199
A +K
Sbjct: 249 SAPQK 253
>sp|P62755|RS6_RAT 40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1
Length = 249
Score = 240 bits (612), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 134/185 (72%), Positives = 153/185 (82%), Gaps = 8/185 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct: 72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L KEGKK KAPKIQRL+TP
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKAPKIQRLVTPRV 184
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
LQ KR +ALKK+R K KE+AAEYAKLLA R+KE K+K +E KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244
Query: 194 EPAAK 198
E + K
Sbjct: 245 ESSQK 249
>sp|P62754|RS6_MOUSE 40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1
Length = 249
Score = 240 bits (612), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 134/185 (72%), Positives = 153/185 (82%), Gaps = 8/185 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct: 72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L KEGKK KAPKIQRL+TP
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKAPKIQRLVTPRV 184
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
LQ KR +ALKK+R K KE+AAEYAKLLA R+KE K+K +E KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244
Query: 194 EPAAK 198
E + K
Sbjct: 245 ESSQK 249
>sp|Q4R4K6|RS6_MACFA 40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1
Length = 249
Score = 240 bits (612), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 134/185 (72%), Positives = 153/185 (82%), Gaps = 8/185 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct: 72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L KEGKK KAPKIQRL+TP
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKAPKIQRLVTPRV 184
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
LQ KR +ALKK+R K KE+AAEYAKLLA R+KE K+K +E KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244
Query: 194 EPAAK 198
E + K
Sbjct: 245 ESSQK 249
>sp|P62753|RS6_HUMAN 40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1
Length = 249
Score = 240 bits (612), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 134/185 (72%), Positives = 153/185 (82%), Gaps = 8/185 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct: 72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L KEGKK KAPKIQRL+TP
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKAPKIQRLVTPRV 184
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
LQ KR +ALKK+R K KE+AAEYAKLLA R+KE K+K +E KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244
Query: 194 EPAAK 198
E + K
Sbjct: 245 ESSQK 249
>sp|P47838|RS6_CHICK 40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1
Length = 249
Score = 239 bits (610), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 133/185 (71%), Positives = 153/185 (82%), Gaps = 8/185 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct: 72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L KEGKK KAPKIQRL+TP
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKAPKIQRLVTPRV 184
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
LQ KR +ALKK+R K KE+AA+YAKLLA R+KE K+K +E KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244
Query: 194 EPAAK 198
E + K
Sbjct: 245 ESSQK 249
>sp|P39017|RS6_XENLA 40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1
Length = 249
Score = 239 bits (610), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/185 (72%), Positives = 152/185 (82%), Gaps = 8/185 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+VRKGE++IPGLTD T+PR
Sbjct: 72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKDIPGLTDNTVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L AKEGKK KAPKIQRL+TP
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----AKEGKK---PRTKAPKIQRLVTPRV 184
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
LQ KR +ALKK+R K KE+A+EYAKLLA R KE K+K +E KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAKEKRQEQIAKRRRLSSLRASTSKS 244
Query: 194 EPAAK 198
E + K
Sbjct: 245 ESSQK 249
>sp|Q94624|RS6_MANSE 40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1
Length = 253
Score = 239 bits (610), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/187 (72%), Positives = 157/187 (83%), Gaps = 3/187 (1%)
Query: 13 DRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTI 72
+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+NLSVLALV+VRKGEQEIPGLTD +
Sbjct: 70 NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQEIPGLTDGNV 129
Query: 73 PRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITP 132
PRRLGPKRASKIRKLFNLSKEDDVR+YV+K L PAKEGK+ + YKAPKIQRL+TP
Sbjct: 130 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKALL---PAKEGKENAKPRYKAPKIQRLVTP 186
Query: 133 VTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTAS 192
V LQR+RH LALKK+R KRK A+YAKLLA R KE K +++E KRRRS+S+R S +S
Sbjct: 187 VVLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIKRRRSASMRDSKSS 246
Query: 193 SEPAAKK 199
++ A +K
Sbjct: 247 NQSAPQK 253
>sp|Q5E995|RS6_BOVIN 40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1
Length = 249
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/185 (71%), Positives = 153/185 (82%), Gaps = 8/185 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct: 72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L K+GKK KAPKIQRL+TP
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKDGKK---PRTKAPKIQRLVTPRV 184
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
LQ KR +ALKK+R K KE+AAEYAKLLA R+KE K+K +E KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244
Query: 194 EPAAK 198
E + K
Sbjct: 245 ESSQK 249
>sp|O01727|RS6_BRAFL 40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3
SV=1
Length = 244
Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/177 (70%), Positives = 145/177 (81%), Gaps = 6/177 (3%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLL KGHSCYRPRRTGERKRKSVRGCIVDSNLSVL LV+++KGEQ+IPGLTDTTIPR
Sbjct: 72 RVRLLLGKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLNLVILKKGEQDIPGLTDTTIPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRA +IRKLFNL+KEDDVRQYV++R P P KEGKK+ +K PKIQRLITP
Sbjct: 132 RLGPKRAGRIRKLFNLNKEDDVRQYVVRR---PLPQKEGKKQK---FKTPKIQRLITPQR 185
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTA 191
LQRKRH+ A+K+RR K++E+ A YAKLLA R KE+++A R R SSLR S +
Sbjct: 186 LQRKRHMRAVKRRRYAKQREEEATYAKLLAKRKKEEREAHAKRRSSARESSLRESKS 242
>sp|Q9BMX5|RS6_APLCA 40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1
Length = 247
Score = 234 bits (597), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 126/185 (68%), Positives = 147/185 (79%), Gaps = 9/185 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLL K HSCYRPRRTGERKRKSVRGCIVDSNLSVL+LV+++KGEQ+IPGLTD TIPR
Sbjct: 72 RVRLLLDKNHSCYRPRRTGERKRKSVRGCIVDSNLSVLSLVIIKKGEQDIPGLTDKTIPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRASKIRKLFNLSKEDDVRQYV++R LP + K+ K KAPKIQRL+TPV
Sbjct: 132 RLGPKRASKIRKLFNLSKEDDVRQYVVRRPLPERDGKKAKS------KAPKIQRLVTPVV 185
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
LQRKR +ALKK+R K++E AEY KLLA R+KE AKE + +R+RS+S + E
Sbjct: 186 LQRKRARMALKKKRVTKKREDHAEYTKLLAQRMKE---AKERKMERKRSNSRSKGDSIRE 242
Query: 195 PAAKK 199
+KK
Sbjct: 243 STSKK 247
>sp|Q9YGF2|RS6_ONCMY 40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1
Length = 249
Score = 234 bits (596), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 129/185 (69%), Positives = 152/185 (82%), Gaps = 8/185 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLL+KGHSCYRPRRTGERKRKSVRGCI D+NLSVL LV+++KGE++IPGLTD+T+PR
Sbjct: 72 RVRLLLAKGHSCYRPRRTGERKRKSVRGCIGDANLSVLNLVIIKKGEKDIPGLTDSTVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRASKIRKLFNL+KEDDVRQYV++R L KEGKK KAP+IQRL+TP
Sbjct: 132 RLGPKRASKIRKLFNLAKEDDVRQYVVRRPL----TKEGKK---PRTKAPRIQRLVTPRV 184
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
LQ KR +ALKK+R K KE+A+EYAKLLA R+KE K+K +E KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244
Query: 194 EPAAK 198
E + K
Sbjct: 245 ESSQK 249
>sp|Q2PQM1|RS6_GLOMM 40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6
PE=2 SV=1
Length = 248
Score = 232 bits (591), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/173 (73%), Positives = 146/173 (84%), Gaps = 7/173 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLL KGHSCYRPRRTGERKRKSVRGCIVD+N+SVLALV+V+KGE++IPGLTDT++PR
Sbjct: 72 RVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVIVKKGEKDIPGLTDTSVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRASKIRKL+NLSK DDVR YVI+R P PAK+ KK + KAPKIQRLITPV
Sbjct: 132 RLGPKRASKIRKLYNLSKVDDVRPYVIRR---PLPAKDNKKAIS---KAPKIQRLITPVV 185
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLR 187
LQRKR +ALKK+R KE AA+YAKLLA R KE KAK +E KRRRS+S+R
Sbjct: 186 LQRKRRRIALKKKRQAASKEAAADYAKLLAQRKKE-SKAKREEAKRRRSASMR 237
>sp|P29327|RS6_DROME 40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1
SV=1
Length = 248
Score = 230 bits (587), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 126/173 (72%), Positives = 146/173 (84%), Gaps = 7/173 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLL KGHSCYRPRRTGERKRKSVRGCIVD+N+SVLALVV++KGE++IPGLTDTTIPR
Sbjct: 72 RVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRASKIRKL+NLSKEDDVR++V++R P PAK+ KK KAPKIQRLITPV
Sbjct: 132 RLGPKRASKIRKLYNLSKEDDVRRFVVRR---PLPAKDNKKATS---KAPKIQRLITPVV 185
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLR 187
LQRK +ALKK+R + KE +A+YAKLL R KE KAK +E KRRRS+S+R
Sbjct: 186 LQRKHRRIALKKKRQIASKEASADYAKLLVQRKKE-SKAKREEAKRRRSASIR 237
>sp|Q90YR8|RS6_ICTPU 40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1
Length = 249
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/174 (72%), Positives = 146/174 (83%), Gaps = 8/174 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV++RKGE++IPGLTD+T+PR
Sbjct: 72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIIRKGEKDIPGLTDSTVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRAS+IRKLFNLSKEDDVRQYV++R L KEGKK KAPKIQRL+TP
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRRPL----TKEGKK---PRTKAPKIQRLVTPRV 184
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLR 187
LQ KR +ALK++R K K++AAEYAKLLA R+KE K+K +E KRRR SSLR
Sbjct: 185 LQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIAKRRRLSSLR 238
>sp|Q9U761|RS6_AEDAE 40S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 PE=2 SV=2
Length = 346
Score = 223 bits (568), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 112/151 (74%), Positives = 126/151 (83%), Gaps = 6/151 (3%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLL KGHSCYRPRRTGERKRKSVRGCIVD NLS LAL+VV+KGE++IPGLTDTT+PR
Sbjct: 72 RVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRAS IRKL+NL+KEDDVRQ+V+KR LP K K+ + KAPKIQRLITPV
Sbjct: 132 RLGPKRASNIRKLYNLTKEDDVRQFVVKRPLPEKDGKKART------KAPKIQRLITPVV 185
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAI 165
LQRKRH LA+KKRR RKE AEY K+L +
Sbjct: 186 LQRKRHRLAIKKRRVESRKEAEAEYMKILHL 216
>sp|Q9U762|RS6_AEDAL 40S ribosomal protein S6 OS=Aedes albopictus GN=RpS6 PE=2 SV=1
Length = 349
Score = 220 bits (560), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/151 (74%), Positives = 125/151 (82%), Gaps = 6/151 (3%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLL KGHSCYRPRRTGERKRKSVRGCIVD NLS LAL+VV+KGE++IPGLTDTT+ R
Sbjct: 72 RVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVLR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRAS IRKL+NL+KEDDVRQYV+KR LP K K+ + KAPKIQRLITPV
Sbjct: 132 RLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEKDGKKPRT------KAPKIQRLITPVV 185
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAI 165
LQRKRH LA+KKRR RKE AEY K+L +
Sbjct: 186 LQRKRHRLAIKKRRVESRKEAEAEYMKILHL 216
>sp|Q9C0Z7|RS6B_SCHPO 40S ribosomal protein S6-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps6b PE=1 SV=1
Length = 239
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/170 (66%), Positives = 136/170 (80%), Gaps = 5/170 (2%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLL GH CYRPRR GERKRKSVRGCIV +L+VLAL +V++GEQ+IPGLTD T+P+
Sbjct: 72 RVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPK 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRASKIR+ FNLSKEDDVRQ+VI+R + PK KEGKK KAPKIQRL+TP T
Sbjct: 132 RLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPK--KEGKK---PYTKAPKIQRLVTPRT 186
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSS 184
LQ KRH ALK+R+ K +E+AAE+A+L+A R+ E K+ KE + RR SS
Sbjct: 187 LQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKEVVKARRASS 236
>sp|P05752|RS6A_SCHPO 40S ribosomal protein S6-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps6a PE=1 SV=2
Length = 239
Score = 213 bits (543), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 113/173 (65%), Positives = 139/173 (80%), Gaps = 6/173 (3%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLL GH CYRPRR GERKRKSVRGCIV +L+VLAL ++++GEQ+IPGLTD T+P+
Sbjct: 72 RVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPK 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRASKIR+ FNLSKEDDVRQ+VI+R + PK KEGKK KAPKIQRL+TP T
Sbjct: 132 RLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPK--KEGKKP---YTKAPKIQRLVTPRT 186
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLR 187
LQ KRH ALK+R+ K +E+AAE+A+L+A R+ E K+ +E K RR+SSL+
Sbjct: 187 LQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKREVV-KARRASSLK 238
>sp|Q6BXH8|RS6_DEBHA 40S ribosomal protein S6 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RPS6 PE=3 SV=1
Length = 236
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/173 (61%), Positives = 135/173 (78%), Gaps = 9/173 (5%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RV+LLL+KGHSCYRPRRTGERKRKSVRGCIV +L+VLAL VV++G+ +I GLTDTT P+
Sbjct: 72 RVKLLLAKGHSCYRPRRTGERKRKSVRGCIVAQDLAVLALSVVKQGDSDIEGLTDTTTPK 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRA+ IRK F L+KEDDVRQ+V++R + K +K KAPKIQRL+TP T
Sbjct: 132 RLGPKRANNIRKFFGLTKEDDVRQFVVRREVV--------KGDKKYTKAPKIQRLVTPQT 183
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLR 187
LQRKR L A K + ++++ AAEYA+LLA R+ E +KA+ E K+RR+SSL+
Sbjct: 184 LQRKRALKAQKVKNAQQQRDAAAEYAQLLAQRLHE-RKAERAEIKKRRASSLK 235
>sp|P0CX38|RS6B_YEAST 40S ribosomal protein S6-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS6B PE=1 SV=1
Length = 236
Score = 184 bits (467), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/171 (62%), Positives = 128/171 (74%), Gaps = 10/171 (5%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
R++LLL+K SCYRPRR GERKRKSVRG IV +L+VLALV+V+KGEQE+ GLTDTT+P+
Sbjct: 72 RIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPK 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLY-KAPKIQRLITPV 133
RLGPKRA+ IRK F LSKEDDVR +VI+R + K K Y KAPKIQRL+TP
Sbjct: 132 RLGPKRANNIRKFFGLSKEDDVRDFVIRREVT---------KGEKTYTKAPKIQRLVTPQ 182
Query: 134 TLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSS 184
LQRKRH ALK R ++E AAEYA+LLA R+ E+K K + RKRR SS
Sbjct: 183 RLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASS 233
>sp|P0CX37|RS6A_YEAST 40S ribosomal protein S6-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS6A PE=1 SV=1
Length = 236
Score = 184 bits (467), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/171 (62%), Positives = 128/171 (74%), Gaps = 10/171 (5%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
R++LLL+K SCYRPRR GERKRKSVRG IV +L+VLALV+V+KGEQE+ GLTDTT+P+
Sbjct: 72 RIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPK 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLY-KAPKIQRLITPV 133
RLGPKRA+ IRK F LSKEDDVR +VI+R + K K Y KAPKIQRL+TP
Sbjct: 132 RLGPKRANNIRKFFGLSKEDDVRDFVIRREVT---------KGEKTYTKAPKIQRLVTPQ 182
Query: 134 TLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSS 184
LQRKRH ALK R ++E AAEYA+LLA R+ E+K K + RKRR SS
Sbjct: 183 RLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASS 233
>sp|Q6FJH3|RS6_CANGA 40S ribosomal protein S6 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPS6A
PE=3 SV=1
Length = 236
Score = 183 bits (464), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/171 (60%), Positives = 129/171 (75%), Gaps = 10/171 (5%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RV+LLL+KGHSCYRPRR+GERKRKSVRG IV +L+VL+LV+V+KGEQE+ G+TD T+P+
Sbjct: 72 RVKLLLAKGHSCYRPRRSGERKRKSVRGAIVGPDLAVLSLVIVKKGEQELEGVTDATVPK 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLY-KAPKIQRLITPV 133
RLGPKRA+ IRK F L+KEDDVR +VI+R + K K Y KAPKIQRL+TP
Sbjct: 132 RLGPKRANHIRKFFGLTKEDDVRDFVIRREVT---------KGEKTYTKAPKIQRLVTPQ 182
Query: 134 TLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSS 184
LQRKR+ LK R ++E AAEYA+LLA R+ E+K K + RKRR SS
Sbjct: 183 RLQRKRYQRNLKVRNAQAQREAAAEYAQLLAKRLAERKAEKAETRKRRASS 233
>sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1
Length = 251
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/187 (57%), Positives = 133/187 (71%), Gaps = 14/187 (7%)
Query: 15 RVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTI 72
RVRLLL +G C+R RR GER+RKSVRGCIV +LSVL LV+V+KGE ++PGLTD
Sbjct: 72 RVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEK 131
Query: 73 PRRLGPKRASKIRKLFNLSKEDDVRQYV--IKRTLPPKPAKEGKKKVRKLYKAPKIQRLI 130
PR GPKRASKIRKLFNLSKEDDVR+YV +RT K K KAPKIQRL+
Sbjct: 132 PRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKT-------CSKAPKIQRLV 184
Query: 131 TPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLST 190
TP+TLQRKR +A KK+R K K +AAEY KLLA R+KE++ + + ++RS RLS
Sbjct: 185 TPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRS---RLSA 241
Query: 191 ASSEPAA 197
A+++ A+
Sbjct: 242 AAAKTAS 248
>sp|P51430|RS62_ARATH 40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1
SV=3
Length = 249
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/187 (57%), Positives = 133/187 (71%), Gaps = 14/187 (7%)
Query: 15 RVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTI 72
RVRLLL +G C+R RRTGER+RKSVRGCIV +LSVL LV+V+KG ++PGLTDT
Sbjct: 72 RVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEK 131
Query: 73 PRRLGPKRASKIRKLFNLSKEDDVRQYV--IKRTLPPKPAKEGKKKVRKLYKAPKIQRLI 130
PR GPKRASKIRKLFNL KEDDVR+YV +RT K K K+ KAPKIQRL+
Sbjct: 132 PRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGK-------KVSKAPKIQRLV 184
Query: 131 TPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLST 190
TP+TLQRKR +A KK+R K AA+Y KLLA R+KE++ + + ++RS RLS+
Sbjct: 185 TPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRS---RLSS 241
Query: 191 ASSEPAA 197
A ++P A
Sbjct: 242 APAKPVA 248
>sp|Q74ZK3|RS6_ASHGO 40S ribosomal protein S6 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPS6 PE=3 SV=1
Length = 236
Score = 180 bits (456), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/171 (59%), Positives = 128/171 (74%), Gaps = 10/171 (5%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RV+LL++KG SCYRPRR GERKRKSVRG IV +L+VLAL++ +KG+QEI G+T+ ++P+
Sbjct: 72 RVKLLMAKGTSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGDQEIEGITNESVPK 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLY-KAPKIQRLITPV 133
RLGPKRA+ IRK F L+K+DDVR +VI+R + K K Y KAPKIQRL+TP
Sbjct: 132 RLGPKRANNIRKFFGLTKDDDVRDFVIRREVV---------KGDKTYTKAPKIQRLVTPQ 182
Query: 134 TLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSS 184
LQRKRH ALK R ++E AAEYA+LLA R+ EKK K +ERKRR SS
Sbjct: 183 RLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEKAEERKRRASS 233
>sp|Q6CM04|RS6_KLULA 40S ribosomal protein S6 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RPS6 PE=3 SV=1
Length = 236
Score = 180 bits (456), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 126/170 (74%), Gaps = 8/170 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RV+LLL+KGHSCYRPRR GERKRKSVRG IV +L+VLAL++ +KGEQEI G+T+ T+P+
Sbjct: 72 RVKLLLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIEGITNDTVPK 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRA+ IRK F L+KEDDVR YVI+R + K + KAPKIQRL+TP
Sbjct: 132 RLGPKRANNIRKFFGLTKEDDVRDYVIRREVT--------KGDKSYTKAPKIQRLVTPQR 183
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSS 184
LQRKR +LK + ++E AAEYA+LLA R+ E+K K + RKRR SS
Sbjct: 184 LQRKRQQKSLKIKNAQAQREAAAEYAQLLAKRLSERKAEKAEVRKRRASS 233
>sp|Q9NEN6|RS6_CAEEL 40S ribosomal protein S6 OS=Caenorhabditis elegans GN=rps-6 PE=1
SV=1
Length = 246
Score = 177 bits (449), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/162 (58%), Positives = 117/162 (72%), Gaps = 11/162 (6%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLL KG SCYR R+ GERKRKSVRGCIVD+N+S L+LV+V+KG+ EI GLTD+ +PR
Sbjct: 72 RVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVI--KRTLPPKPAKEGKKKVRKLYKAPKIQRLITP 132
+LGPKRASKIRKLFNL+K DDV +YVI +T P K APKIQRLITP
Sbjct: 132 KLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKT---------IAPKIQRLITP 182
Query: 133 VTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAK 174
+ RK++LL K+ + +K ++ AA Y KLLA KE+ AK
Sbjct: 183 ARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKEEHDAK 224
>sp|Q6C169|RS6_YARLI 40S ribosomal protein S6 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=RPS6 PE=3 SV=1
Length = 242
Score = 173 bits (439), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 126/179 (70%), Gaps = 8/179 (4%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLLSK SCYR RR GERKRKSVRGCIV S+LSVL++V+V++G+ +I GLT T+PR
Sbjct: 72 RVRLLLSKDSSCYRSRRAGERKRKSVRGCIVSSDLSVLSVVIVKQGDADIEGLTTETVPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRA+ IRKLF LSKEDDVRQYVI+R + K K KAPKIQRLITP
Sbjct: 132 RLGPKRANNIRKLFALSKEDDVRQYVIRREVTTKSGK-------TYTKAPKIQRLITPRR 184
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASS 193
L K L K + K+ AAEYA+LLA R+ EKK K E K+RR+SSLR + +
Sbjct: 185 LAHKAQLREKKVKAIQASKDAAAEYAQLLAKRVAEKKSEKA-EEKKRRASSLRTQSVQA 242
>sp|P41798|RS6_KLUMA 40S ribosomal protein S6 OS=Kluyveromyces marxianus GN=RPS6 PE=3
SV=1
Length = 235
Score = 173 bits (439), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 102/174 (58%), Positives = 129/174 (74%), Gaps = 14/174 (8%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RV+LL++KG SCYRPRR GERKRKSVRG IV +L+VLALV+V+KG+QEI G+T+ T+P+
Sbjct: 72 RVKLLMAKGTSCYRPRRNGERKRKSVRGAIVGPDLAVLALVIVKKGDQEIEGVTNETVPK 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLY-KAPKIQRLITPV 133
RLGPKRA+ IRK F L+KEDDVR YVI+R + K K Y KAPKIQRL+TP
Sbjct: 132 RLGPKRANNIRKFFGLTKEDDVRDYVIRREVT---------KGEKTYTKAPKIQRLVTPQ 182
Query: 134 TLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLR 187
LQRKR ALK + ++E AAEYA+LLA R+ E+K E ++RR+SSL+
Sbjct: 183 RLQRKRQQKALKIKNAQAQREAAAEYAQLLAKRLAERKA----EVRKRRASSLK 232
>sp|O48549|RS61_ARATH 40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1
SV=2
Length = 250
Score = 172 bits (435), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 133/187 (71%), Gaps = 14/187 (7%)
Query: 15 RVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTI 72
RVRLLL +G C+R RRTGER+RKSVRGCIV +LSVL LV+V+KGE ++PGLTDT
Sbjct: 72 RVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEK 131
Query: 73 PRRLGPKRASKIRKLFNLSKEDDVRQYV--IKRTLPPKPAKEGKKKVRKLYKAPKIQRLI 130
PR GPKRASKIRKLFNL KEDDVR YV +R K KE + KAPKIQRL+
Sbjct: 132 PRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKE-------VSKAPKIQRLV 184
Query: 131 TPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLST 190
TP+TLQRKR +A KK++ K AA+Y KLLA R+KE++ + + ++RS RLS+
Sbjct: 185 TPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRS---RLSS 241
Query: 191 ASSEPAA 197
A+++P+
Sbjct: 242 AAAKPSV 248
>sp|Q54UU3|RS6_DICDI 40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1
SV=1
Length = 236
Score = 160 bits (404), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 109/158 (68%), Gaps = 6/158 (3%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLLL C++P R GERKRKSVRGCIV +++ L L++V+KG+ EIPGLTD + P
Sbjct: 72 RVRLLLDGRSGCFKPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAEIPGLTDVSFPA 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
GPKRAS IRKLF LSK++DVR +VI+R LP ++ K KAPKIQRL+TP T
Sbjct: 132 SKGPKRASNIRKLFKLSKDEDVRSFVIRRELPATDKRKAKS------KAPKIQRLVTPTT 185
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKK 172
+ R++ L A K R K +AAEYAKL+A R + K K
Sbjct: 186 VARRKALRAKKAARHTKASNEAAEYAKLVAQRQQAKAK 223
>sp|P29345|RS6_TOBAC 40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6
PE=2 SV=2
Length = 199
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/180 (52%), Positives = 120/180 (66%), Gaps = 15/180 (8%)
Query: 15 RVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTI 72
RVRLLL +G C+R RR GER+RKSVRGCIV +LSVL LV+V+KGE ++PGLTDT
Sbjct: 27 RVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEK 86
Query: 73 PRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITP 132
PR GP+ + L+ KEDDVR+YV E K K KAPKIQRL+TP
Sbjct: 87 PRMRGPREPQRSEALY--FKEDDVRKYV-------NTTAEFTTKW-KGSKAPKIQRLVTP 136
Query: 133 VTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTAS 192
+TLQRKR +A KK+R K K +AAEY KLLA R+KE+++ + + ++RS RLS AS
Sbjct: 137 LTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRS---RLSAAS 193
>sp|Q9NE83|RS6_LEIMA 40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1
Length = 249
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 83/120 (69%), Gaps = 9/120 (7%)
Query: 15 RVRLLLSKGHSCYRPRR--TGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTI 72
RV LL+ +G + R GER+RK+VRGC++ S+++++ + + + G+Q I G+TDTT
Sbjct: 73 RVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTA 132
Query: 73 PRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITP 132
PRRLGPKRASKIRKLFNLS+ +DVR K + + K GKK KAPKIQRLITP
Sbjct: 133 PRRLGPKRASKIRKLFNLSRTEDVR----KYVVRRRVVKSGKK---DRLKAPKIQRLITP 185
>sp|O44012|RS6_LEIIN 40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1
Length = 249
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 83/120 (69%), Gaps = 9/120 (7%)
Query: 15 RVRLLLSKGHSCYRPRR--TGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTI 72
RV LL+ +G + R GER+RK+VRGC++ S+++++ + + + G+Q I G+TDTT
Sbjct: 73 RVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTA 132
Query: 73 PRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITP 132
PRRLGPKRASKIRKLFNLS+ +DVR K + + K GKK KAPKIQRLITP
Sbjct: 133 PRRLGPKRASKIRKLFNLSRTEDVR----KYVVRRRVVKSGKK---DRLKAPKIQRLITP 185
>sp|Q8SRY0|RS6_ENCCU 40S ribosomal protein S6 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS6 PE=3 SV=1
Length = 203
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 14 RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIP 73
+RVR LLSKG + YR RR G R+RKSVRG IV + VL L+++R GE+EI GLT+
Sbjct: 56 KRVRPLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVND 115
Query: 74 RRLGPKRASKIRKLFNL-SKEDDVRQYV 100
P++ K+RK+F + +E +V Y+
Sbjct: 116 VSHLPRKEKKLRKMFGVPDEEKNVVGYI 143
>sp|O26360|RS6E_METTH 30S ribosomal protein S6e OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rps6e PE=3 SV=1
Length = 126
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 10 CPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQ 62
P RR+R L+S G Y+PRR GER+RK+ RG + ++ + VV+ KGE+
Sbjct: 64 VPGARRIRSLVS-GGVGYKPRRDGERRRKTFRGNTISDDIVQINTVVIEKGEK 115
>sp|Q8TVE6|RS6E_METKA 30S ribosomal protein S6e OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rps6e PE=3 SV=1
Length = 130
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEI 64
RVRLLLS G +RP R GER+RK+VRG + ++ + V+V G++ +
Sbjct: 72 RVRLLLS-GPPGFRPERKGERRRKTVRGNTISEDIVQVNTVIVEYGDKPV 120
>sp|P54067|RS6E_METJA 30S ribosomal protein S6e OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps6e PE=3 SV=1
Length = 131
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 14 RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGL 67
R+VR+LLS ++P+R GER+RK+VRG + ++ + + VV GE+ IP L
Sbjct: 68 RKVRVLLSA-PPGFKPKRKGERRRKTVRGNTIAPDIVQINVKVVEYGEKSIPEL 120
>sp|Q5JDK8|RS6E_PYRKO 30S ribosomal protein S6e OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rps6e PE=3 SV=1
Length = 125
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 14 RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVV 57
RRV++LLS+G +RPR GER++K+V G + N+ + + +V
Sbjct: 82 RRVKILLSRG-PGFRPRERGERRKKTVHGNTISPNIVQVNMKIV 124
>sp|O58349|RS6E_PYRHO 30S ribosomal protein S6e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps6e PE=3 SV=1
Length = 125
Score = 37.7 bits (86), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 14 RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIV 45
RRVR+LLSKG +RP+ GER++K+VRG +
Sbjct: 82 RRVRILLSKG-PGFRPKEKGERRKKTVRGNTI 112
>sp|C5A7C4|RS6E_THEGJ 30S ribosomal protein S6e OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rps6e PE=3 SV=1
Length = 125
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 14 RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVV 57
RRVR+LLS+G +RP+ GER++K+VRG + + + V+V
Sbjct: 82 RRVRILLSRG-PGFRPKEKGERRKKTVRGNTISPEIVQINAVLV 124
>sp|Q9UYS3|RS6E_PYRAB 30S ribosomal protein S6e OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rps6e PE=3 SV=1
Length = 125
Score = 37.4 bits (85), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 14 RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIV 45
RRVR+LLSKG +RP+ GER++K+VRG +
Sbjct: 82 RRVRILLSKG-PGFRPKEKGERRKKTVRGNTI 112
>sp|O29739|RS6E_ARCFU 30S ribosomal protein S6e OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps6e PE=3 SV=1
Length = 129
Score = 37.4 bits (85), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 10 CPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKG 60
P R RLLLS G +RP+ G RKRK VRG ++ ++ + VVV+ G
Sbjct: 67 LPGTARRRLLLS-GGVGFRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>sp|Q8U3H8|RS6E_PYRFU 30S ribosomal protein S6e OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rps6e PE=1 SV=1
Length = 125
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 14 RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIV 45
RRVR+LLSKG +RP+ GER++K+VRG +
Sbjct: 82 RRVRVLLSKG-PGFRPKEKGERRKKTVRGNTI 112
>sp|A3MUD0|RS6E_PYRCJ 30S ribosomal protein S6e OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=rps6e PE=3 SV=1
Length = 151
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 17 RLLLSKGHSCYRPRRTGERKRKSVRG-CIVDSNLSVLALVVVRKG 60
R +L+ G YRPR+ G RK+K VRG I DS + + A++V +G
Sbjct: 78 RYILADGPPGYRPRKRGMRKKKLVRGDTITDSIVQINAVLVYPEG 122
>sp|C0MDY5|IF2_STRS7 Translation initiation factor IF-2 OS=Streptococcus equi subsp.
zooepidemicus (strain H70) GN=infB PE=3 SV=1
Length = 959
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 142 LALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRR---RSSSLRLSTASS---EP 195
+ K R + EQ AEYA+ R +E+++AK E++ R ++++L+ T E
Sbjct: 216 IDFKARAAALKAEQNAEYARQRESRFREQEEAKRLEQQARQEAKAAALKAQTEDKKHREA 275
Query: 196 AAKKPAPAAPVTKAAPAPAA 215
AK PA PV A AP A
Sbjct: 276 PAKATEPAEPVASMAAAPVA 295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,504,133
Number of Sequences: 539616
Number of extensions: 3213558
Number of successful extensions: 33720
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 698
Number of HSP's that attempted gapping in prelim test: 28922
Number of HSP's gapped (non-prelim): 3960
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)