Query psy17953
Match_columns 234
No_of_seqs 184 out of 353
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 18:36:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1646|consensus 100.0 7.2E-79 1.6E-83 531.9 13.9 176 4-187 61-236 (237)
2 PTZ00028 40S ribosomal protein 100.0 4.8E-70 1E-74 477.4 15.4 157 4-170 61-217 (218)
3 PF01092 Ribosomal_S6e: Riboso 99.9 2.8E-28 6.1E-33 199.5 3.7 67 4-70 61-127 (127)
4 PRK04290 30S ribosomal protein 99.9 4.5E-22 9.7E-27 161.0 5.6 54 5-59 62-115 (115)
5 COG2125 RPS6A Ribosomal protei 99.8 4.4E-21 9.5E-26 156.2 5.5 58 5-63 63-120 (120)
6 PRK00247 putative inner membra 73.7 29 0.00064 34.2 9.8 46 125-170 312-358 (429)
7 PF07462 MSP1_C: Merozoite sur 51.9 26 0.00056 36.0 5.0 17 149-165 244-260 (574)
8 PRK08406 transcription elongat 25.4 59 0.0013 27.1 2.4 49 39-100 23-78 (140)
9 KOG1924|consensus 24.4 3.6E+02 0.0077 29.8 8.2 86 146-234 466-551 (1102)
10 PF07462 MSP1_C: Merozoite sur 23.2 76 0.0017 32.7 3.1 17 130-146 174-190 (574)
11 TIGR01952 nusA_arch NusA famil 23.2 79 0.0017 26.7 2.7 52 39-102 23-81 (141)
12 cd00225 API3 Ascaris pepsin in 21.3 3.4E+02 0.0073 24.0 6.2 55 153-215 43-97 (159)
No 1
>KOG1646|consensus
Probab=100.00 E-value=7.2e-79 Score=531.92 Aligned_cols=176 Identities=73% Similarity=1.036 Sum_probs=169.8
Q ss_pred ecccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEeccCCCCCCCCCCCCCCccCCCchhh
Q psy17953 4 ITKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGPKRASK 83 (234)
Q Consensus 4 ~~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKkGek~IpgLTD~tvPrrLGPKRAsk 83 (234)
+-|+|||||++||+|||++|||||||||+|||+|||||||||++|||+|||+||++||+|||||||+++|++|||||||+
T Consensus 61 FPMkqGvLt~~RvrlLL~kg~scyRpRr~GeRkRKSVRGcIV~anlsvLnLvIvKkGekdipGLTdt~~P~rlGPkRask 140 (237)
T KOG1646|consen 61 FPMKQGVLTPGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVSANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASK 140 (237)
T ss_pred CcccccccccchhhhhhhcCccccccccccccccccccceeecccceeeeeeEeccCcccCCCccccccccccCchhhHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcCccccceecccCCCCCCCCCCccccccccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17953 84 IRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLL 163 (234)
Q Consensus 84 IRKLFnLSKeDDVrkyVirr~l~~~~~kegkK~~~~~tKaPKIQRLVTP~~LQrKr~~~alKk~r~~k~keeaaeYakLL 163 (234)
||||||||+||||++||||++++ ++|++++ ||||||||||||.+||||++++|+|++++.+++|+|+||++||
T Consensus 141 IrKlfnLskEddvr~~vir~~~~----~~~~k~~---tkaPKIqrlvtp~~lqrk~~~~alkk~~~~k~re~aaey~kLL 213 (237)
T KOG1646|consen 141 IRKLFNLSKEDDVRQYVIRRPLT----KEGKKPK---TKAPKIQRLVTPRRLQRKRQRIALKKKQIKKNREEAAEYAKLL 213 (237)
T ss_pred HHHHhCCCccccceeeEEecccc----ccCCCcc---ccCcchhhccchHHHHhhhhHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999997 8999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhhc
Q psy17953 164 AIRIKEKKKAKEDERKRRRSSSLR 187 (234)
Q Consensus 164 akr~ke~k~~~~~~~krrr~ss~r 187 (234)
++|++|+++++.+ ++++++||++
T Consensus 214 akr~kE~k~kr~e-~~~rr~ss~~ 236 (237)
T KOG1646|consen 214 AKRLKEAKEKRFE-VKRRRASSLR 236 (237)
T ss_pred HHHHHHHHHHHHH-HHHHhhhhhc
Confidence 9999999999865 6677777765
No 2
>PTZ00028 40S ribosomal protein S6e; Provisional
Probab=100.00 E-value=4.8e-70 Score=477.37 Aligned_cols=157 Identities=62% Similarity=0.919 Sum_probs=151.2
Q ss_pred ecccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEeccCCCCCCCCCCCCCCccCCCchhh
Q psy17953 4 ITKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGPKRASK 83 (234)
Q Consensus 4 ~~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKkGek~IpgLTD~tvPrrLGPKRAsk 83 (234)
+-|+|||+|++||+|||++||+||||+++|||+||||||||||+||||||++||++||++||||||+++|++|||||||+
T Consensus 61 fPMkqgV~~~~RvrlLL~kG~~gyrprr~GeRkRKsVRGciVs~dis~lNlvIvk~Ge~~i~gLtd~~~prrlgPkrask 140 (218)
T PTZ00028 61 FPMMQGVLTNNRVRLLFRKGMKCYRPRRTGEMKRKSVRGCIVGHDLSVLNLVLVKKGPQEIPGLTDGERPRRLGPKRASK 140 (218)
T ss_pred cccCCCccCCceEEEEecCCCCCCCcCCCCcceeeeeeeeeecCCceEEEEEEEecCCccChhhccCcCCccCCCcchhh
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcCccccceecccCCCCCCCCCCccccccccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17953 84 IRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLL 163 (234)
Q Consensus 84 IRKLFnLSKeDDVrkyVirr~l~~~~~kegkK~~~~~tKaPKIQRLVTP~~LQrKr~~~alKk~r~~k~keeaaeYakLL 163 (234)
|||||||||+|||++|||+|++. |++ . +|||||||||||.+||||++++++|+++.++++++++||++||
T Consensus 141 irklfnlsk~ddvrk~virr~~~------gkk-~---~KapKIQRLiTp~~lqrKr~~~~~k~~r~~~~k~~~~ey~kll 210 (218)
T PTZ00028 141 IRKLFNLSKSDDVRKFVVRRKIE------GKN-K---TKAPKIQRLVTPQRLQRKRRYRKTLKKKVLQSREEAKEYQKLL 210 (218)
T ss_pred hHHHhCCCccCChhhceeccccC------CCC-C---CcCCceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999983 544 3 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy17953 164 AIRIKEK 170 (234)
Q Consensus 164 akr~ke~ 170 (234)
++|++|.
T Consensus 211 ~~~~~e~ 217 (218)
T PTZ00028 211 EEYKNEK 217 (218)
T ss_pred HHHHhhc
Confidence 9999874
No 3
>PF01092 Ribosomal_S6e: Ribosomal protein S6e; InterPro: IPR001377 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins have been grouped on the basis of sequence similarities. Ribosomal protein S6 is the major substrate of protein kinases in eukaryotic ribosomes [] and may play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZM_Y 2XZN_Y 3U5C_G 3U5G_G 3J16_C.
Probab=99.94 E-value=2.8e-28 Score=199.54 Aligned_cols=67 Identities=57% Similarity=0.844 Sum_probs=48.2
Q ss_pred ecccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEeccCCCCCCCCCC
Q psy17953 4 ITKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDT 70 (234)
Q Consensus 4 ~~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKkGek~IpgLTD~ 70 (234)
+.|++||++++||++||++||+||||+++|||||||||||||++||+|||++||++||++||||||+
T Consensus 61 fPMr~~v~~~~rvr~Ll~~G~~gyrp~r~GeRrRKsVRG~~is~di~qiN~~Iv~~G~k~i~glt~~ 127 (127)
T PF01092_consen 61 FPMRQGVLGPGRVRLLLSKGGPGYRPRRKGERRRKSVRGNIISADISQINLVIVKKGEKPIPGLTDT 127 (127)
T ss_dssp -BB-TT---SSEEEEEE-TTBTTB--SSTT--EEEEEE-SC--TTEEEEEEEEEE--SS--HHHHT-
T ss_pred ceeecCCCCcceEEEEEeCCCcccccCcCCeEeeeeeeccEecCCeeeEEEEEEEecCccCccccCC
Confidence 3589999999999999999999999999999999999999999999999999999999999999996
No 4
>PRK04290 30S ribosomal protein S6e; Validated
Probab=99.85 E-value=4.5e-22 Score=161.02 Aligned_cols=54 Identities=35% Similarity=0.540 Sum_probs=52.2
Q ss_pred cccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEec
Q psy17953 5 TKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRK 59 (234)
Q Consensus 5 ~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKk 59 (234)
-|++||++++|++|||++| +||||+++|||||||||||||++||+|||++||++
T Consensus 62 PM~~~v~~~~r~rlLl~~g-~gyrp~r~GeRrRKsVRG~~vs~di~qiN~~iv~~ 115 (115)
T PRK04290 62 PMRPDVPGPVRRRILLSGG-PGFRPKEKGERRRKTVRGNTISDDIVQINAKVVEY 115 (115)
T ss_pred cccCCccCCceEEEEecCC-CCCCcCCCCcEEEEEEEccEEcCCeeEEEEEEEcC
Confidence 5899999999999999999 99999999999999999999999999999999974
No 5
>COG2125 RPS6A Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.4e-21 Score=156.19 Aligned_cols=58 Identities=48% Similarity=0.728 Sum_probs=55.4
Q ss_pred cccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEeccCCC
Q psy17953 5 TKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQE 63 (234)
Q Consensus 5 ~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKkGek~ 63 (234)
-|.+||++++|+++||++ ++||||+++|||||||||||||++||+|||++||++||++
T Consensus 63 PMr~dv~g~~r~riLls~-~~GyrP~~~GeRrRKtVRG~~Is~dI~QiN~~Iv~~ge~~ 120 (120)
T COG2125 63 PMRPDVPGPRRVRILLSG-GPGYRPRRKGERKRKTVRGNIISPDIVQINLVIVEYGEKP 120 (120)
T ss_pred cccCCCCCcceEEEEecc-CCCcCCCCCCceeeeeecccccchhheeeEEEEEecCCCC
Confidence 489999999999999995 6999999999999999999999999999999999999864
No 6
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=73.66 E-value=29 Score=34.24 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=28.6
Q ss_pred CcccccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17953 125 KIQRLITPVTLQRKRHLL-ALKKRRCLKRKEQAAEYAKLLAIRIKEK 170 (234)
Q Consensus 125 KIQRLVTP~~LQrKr~~~-alKk~r~~k~keeaaeYakLLakr~ke~ 170 (234)
-.+-||+|..+-.=+..+ ++|+.+.+..+|+.++-..+-.+|.+..
T Consensus 312 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~ 358 (429)
T PRK00247 312 RLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAE 358 (429)
T ss_pred cccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689998776655444 4566666666666666665555555444
No 7
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=51.89 E-value=26 Score=35.99 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17953 149 CLKRKEQAAEYAKLLAI 165 (234)
Q Consensus 149 ~~k~keeaaeYakLLak 165 (234)
+..-+++...|..||=+
T Consensus 244 ~~~Vk~ALq~YqELLPK 260 (574)
T PF07462_consen 244 IAEVKEALQAYQELLPK 260 (574)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 33445666777776654
No 8
>PRK08406 transcription elongation factor NusA-like protein; Validated
Probab=25.38 E-value=59 Score=27.09 Aligned_cols=49 Identities=20% Similarity=0.560 Sum_probs=29.0
Q ss_pred eecceeecCCcceEEEEEEeccCCCCCCCCCCCCCCccCC--CchhhhhhhhCC-----CCcCccccce
Q psy17953 39 SVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGP--KRASKIRKLFNL-----SKEDDVRQYV 100 (234)
Q Consensus 39 SVRGciV~~disvLNlvIVKkGek~IpgLTD~tvPrrLGP--KRAskIRKLFnL-----SKeDDVrkyV 100 (234)
+++-|++++|...+ ||+.| .+....|+ .|...|..+.|- .-.||..+|+
T Consensus 23 ~~~dc~~d~~~vi~---vV~~~----------~vG~~IG~~G~rI~~i~e~lgekIdVve~s~d~~~fI 78 (140)
T PRK08406 23 TVKDCIIDDDRIIF---VVKEG----------DMGLAIGKGGENVKRLEEKLGKDIELVEYSDDPEEFI 78 (140)
T ss_pred CceEEEEeCCEEEE---EEeCC----------CccccCCcCchHHHHHHHHhCCceEEEEcCCCHHHHH
Confidence 67889999976443 66655 35667776 444555555441 1125666665
No 9
>KOG1924|consensus
Probab=24.41 E-value=3.6e+02 Score=29.78 Aligned_cols=86 Identities=19% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhccccCCCCCccCCCCCCCcccccCCCchhhhcccccccc
Q psy17953 146 KRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAA 225 (234)
Q Consensus 146 k~r~~k~keeaaeYakLLakr~ke~k~~~~~~~krrr~ss~r~s~s~~~~~~k~~~~~~~~~~~~~~~~a~~~~~~~~~~ 225 (234)
+...++++++|+||.+-+.+-.-...+..++-++.--.--+-..+--.-++... .++.-+ -..+++..|..|.+++.+
T Consensus 466 kak~eeseqkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~~al~s~~~-~~~~~~-~iP~PP~~pp~gG~g~pp 543 (1102)
T KOG1924|consen 466 KAKAEESEQKAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEKQALSSPSQ-LLPIDG-GIPPPPPLPPTGGTGPPP 543 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhhhhccCccc-CCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_pred cCCCCCCCC
Q psy17953 226 APVGPTNLP 234 (234)
Q Consensus 226 ~~~~~~~~~ 234 (234)
.| ||..||
T Consensus 544 pP-ppPPlp 551 (1102)
T KOG1924|consen 544 PP-PPPPLP 551 (1102)
T ss_pred CC-CCCCCC
No 10
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=23.23 E-value=76 Score=32.74 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=8.1
Q ss_pred cchHHHHHHHHHHHHHH
Q psy17953 130 ITPVTLQRKRHLLALKK 146 (234)
Q Consensus 130 VTP~~LQrKr~~~alKk 146 (234)
++...||+--..+.+.+
T Consensus 174 lSe~SlqkEdNylnlEk 190 (574)
T PF07462_consen 174 LSEESLQKEDNYLNLEK 190 (574)
T ss_pred ccHHHHhhhhhhhhHHH
Confidence 44555555444444433
No 11
>TIGR01952 nusA_arch NusA family KH domain protein, archaeal. This model represents a family of archaeal proteins found in a single copy per genome. It contains two KH domains (pfam00013) and is most closely related to the central region bacterial NusA, a transcription termination factor named for its iteraction with phage lambda protein N in E. coli. The proteins required for antitermination by N include NusA, NusB, nusE (ribosomal protein S10), and nusG. This system, on the whole, appears not to be present in the Archaea.
Probab=23.19 E-value=79 Score=26.65 Aligned_cols=52 Identities=19% Similarity=0.512 Sum_probs=34.3
Q ss_pred eecceeecCCcceEEEEEEeccCCCCCCCCCCCCCCccCC--CchhhhhhhhCC-----CCcCccccceec
Q psy17953 39 SVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGP--KRASKIRKLFNL-----SKEDDVRQYVIK 102 (234)
Q Consensus 39 SVRGciV~~disvLNlvIVKkGek~IpgLTD~tvPrrLGP--KRAskIRKLFnL-----SKeDDVrkyVir 102 (234)
+++-|++|++- -=+.||+.|+ +....|+ .|..+|+.|+|- --.||..+||..
T Consensus 23 ~~~dc~~d~~~--riifvV~~g~----------vG~~IG~~G~rIk~i~el~gekIdVVeys~D~~~fI~N 81 (141)
T TIGR01952 23 TVVDCLIDDRN--RVVFVVKEGE----------MGAAIGKGGENVKRLEELIGKSIELIEYSENLEEFVAN 81 (141)
T ss_pred ceEEEEecCCc--EEEEEEcCCC----------ccccCCCCchHHHHHHHhcCCeeEEEEcCCCHHHHHHH
Confidence 67899999985 2344667663 4556666 667777777772 223777888754
No 12
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=21.34 E-value=3.4e+02 Score=23.95 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhccccCCCCCccCCCCCCCcccccCCCchh
Q psy17953 153 KEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAA 215 (234)
Q Consensus 153 keeaaeYakLLakr~ke~k~~~~~~~krrr~ss~r~s~s~~~~~~k~~~~~~~~~~~~~~~~a 215 (234)
.++.++|+.-+.+-.+|..+..+ -++. +-.. +..+..-++.|.+|-+..+|.++-
T Consensus 43 ~~d~~~yK~~~k~~l~er~~~~~----~~~~-~~~~---~~~~~~~~~~Pk~PkkPsFCt~~D 97 (159)
T cd00225 43 VEDVADYKEEVKQALKERQEGLK----LRRA-GKKK---KAVTLAEEKLPKAPKKPSFCSPDD 97 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh----hhhh-cccc---cccccccccCCCCCCCCCcCCCCc
Confidence 35677777766666655544432 1111 1111 134445667777787777887643
Done!