Query psy17953
Match_columns 234
No_of_seqs 184 out of 353
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 18:36:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17953.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17953hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a77a1 a.60.7.1 (A:209-316) F 24.8 11 0.00078 26.6 1.0 23 66-89 14-38 (108)
2 d1v8ha1 b.1.18.19 (A:2-107) Su 19.6 40 0.0029 24.0 3.2 41 14-64 19-59 (106)
3 d1cmwa1 a.60.7.1 (A:174-289) 5 10.1 70 0.0051 21.9 2.2 23 61-89 17-39 (116)
4 d1gm5a2 b.40.4.9 (A:106-285) R 10.1 54 0.0039 23.9 1.7 32 68-100 10-41 (180)
5 d2g0ia1 d.64.2.1 (A:1-111) Hyp 9.9 66 0.0048 22.6 2.0 26 1-29 1-26 (111)
6 d1i27a_ a.4.5.30 (A:) C-termin 7.3 22 0.0016 24.8 -1.6 14 93-106 12-25 (73)
7 d1xo1a1 a.60.7.1 (A:186-290) T 7.3 61 0.0044 22.6 0.8 22 62-89 19-40 (105)
8 d2idla1 d.64.2.1 (A:1-112) Hyp 7.2 1.1E+02 0.008 21.5 2.2 27 1-29 1-27 (112)
9 d2pp6a1 b.106.1.2 (A:1-93) Gif 7.0 1.1E+02 0.0077 21.9 2.0 20 10-32 45-64 (93)
10 d2i1qa1 a.60.4.1 (A:5-64) DNA 5.8 76 0.0055 19.9 0.6 20 67-89 1-21 (60)
No 1
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=24.75 E-value=11 Score=26.56 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=17.1
Q ss_pred CCCCCCCC--CccCCCchhhhhhhhC
Q psy17953 66 GLTDTTIP--RRLGPKRASKIRKLFN 89 (234)
Q Consensus 66 gLTD~tvP--rrLGPKRAskIRKLFn 89 (234)
| ||.++| ...|||+|.++=+-|+
T Consensus 14 G-~dyn~pGV~GIGpktA~klIk~~g 38 (108)
T d1a77a1 14 G-TDYNPGGVKGIGFKRAYELVRSGV 38 (108)
T ss_dssp C-CTTSTTCSTTCCHHHHHHHHHTTC
T ss_pred C-CcCCCCCCCCcCHHHHHHHHHHcC
Confidence 5 665544 5789999999877775
No 2
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=19.61 E-value=40 Score=24.03 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=28.1
Q ss_pred CeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEeccCCCC
Q psy17953 14 RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEI 64 (234)
Q Consensus 14 gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKkGek~I 64 (234)
-+|++|++ ||..+|-|+=+ .|..|-+++ |+-+++..+.+.+
T Consensus 19 ~~vk~li~------HPMeTG~r~d~--~g~~IPa~~--I~~v~v~~ng~~v 59 (106)
T d1v8ha1 19 FRLQVVAQ------HPNEPGTRRDA--EGKLIPAKY--INLVEVYFEGEKV 59 (106)
T ss_dssp EEEEEEEC------CCCBCSCCBCT--TSCBCCCBC--EEEEEEEETTEEE
T ss_pred EEEEEEEE------CCCccccccCC--CCCEecHHh--eEEEEEEECCEEE
Confidence 46888988 67788887654 377776664 5666677665543
No 3
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=10.13 E-value=70 Score=21.88 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCCCccCCCchhhhhhhhC
Q psy17953 61 EQEIPGLTDTTIPRRLGPKRASKIRKLFN 89 (234)
Q Consensus 61 ek~IpgLTD~tvPrrLGPKRAskIRKLFn 89 (234)
...|||+. ..|||-|.++-+-|+
T Consensus 17 sDnipGv~------GiG~KtA~kll~~~g 39 (116)
T d1cmwa1 17 SDNLPGVK------GIGEKTARKLLEEWG 39 (116)
T ss_dssp SSCCCCCC------CSTTCTTTTTGGGGG
T ss_pred ccCccccc------ccCchhHHHHHHhcc
Confidence 45688874 689999999988886
No 4
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.10 E-value=54 Score=23.94 Aligned_cols=32 Identities=28% Similarity=0.590 Sum_probs=24.9
Q ss_pred CCCCCCCccCCCchhhhhhhhCCCCcCccccce
Q psy17953 68 TDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYV 100 (234)
Q Consensus 68 TD~tvPrrLGPKRAskIRKLFnLSKeDDVrkyV 100 (234)
||.+.=+..|||++..+.+| |+..-.|+--|.
T Consensus 10 ~~i~~lkGvGpk~~~~L~kl-gI~ti~DLL~~~ 41 (180)
T d1gm5a2 10 TDIQYAKGVGPNRKKKLKKL-GIETLRDLLEFF 41 (180)
T ss_dssp CCSSSSSSCCHHHHHHHHTT-TCCSSGGGTSCC
T ss_pred CChhhcCCcCHHHHHHHHHh-CCCcHHHHHHhC
Confidence 66677788999999999985 888777764333
No 5
>d2g0ia1 d.64.2.1 (A:1-111) Hypothetical protein Smu.848 {Streptococcus mutans [TaxId: 1309]}
Probab=9.88 E-value=66 Score=22.64 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=16.5
Q ss_pred CeeecccccCCCCCeEEEeecCCCccccC
Q psy17953 1 MIKITKWWLCPKDRRVRLLLSKGHSCYRP 29 (234)
Q Consensus 1 ~~~~~~~~gVlt~gRVrLLLskG~scYRP 29 (234)
||+++-+.. +|.+.-+.-.||.+|-+
T Consensus 1 MI~v~~~~~---~~~i~~f~v~GHA~~~~ 26 (111)
T d2g0ia1 1 MIQATFIRR---KGILESVELTGHAGSGE 26 (111)
T ss_dssp CEEEEEEEE---TTEEEEEEEECCC-CCC
T ss_pred CEEEEEEEc---CCeEEEEEEEecCCCCC
Confidence 787776543 45565455559999985
No 6
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.35 E-value=22 Score=24.77 Aligned_cols=14 Identities=36% Similarity=0.833 Sum_probs=12.3
Q ss_pred cCccccceecccCC
Q psy17953 93 EDDVRQYVIKRTLP 106 (234)
Q Consensus 93 eDDVrkyVirr~l~ 106 (234)
||.||.|+.|+|.+
T Consensus 12 EeaVrRYL~RKPmT 25 (73)
T d1i27a_ 12 EDAVRRYLTRKPMT 25 (73)
T ss_dssp HHHHHHHHHHSCBC
T ss_pred HHHHHHHHhhCCCc
Confidence 57799999999986
No 7
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=7.27 E-value=61 Score=22.59 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCccCCCchhhhhhhhC
Q psy17953 62 QEIPGLTDTTIPRRLGPKRASKIRKLFN 89 (234)
Q Consensus 62 k~IpgLTD~tvPrrLGPKRAskIRKLFn 89 (234)
..|||+ ...|||.|.++-+-|+
T Consensus 19 DnipGV------~GiG~KtA~kli~~~g 40 (105)
T d1xo1a1 19 DNIRGV------EGIGAKRGYNIIREFG 40 (105)
T ss_dssp GTBCCC------TTCCHHHHHHHHHHHC
T ss_pred cCCcCc------CCcCHHHHHHHHHHcc
Confidence 457776 3689999999998887
No 8
>d2idla1 d.64.2.1 (A:1-112) Hypothetical protein SP1106 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=7.16 E-value=1.1e+02 Score=21.50 Aligned_cols=27 Identities=22% Similarity=0.125 Sum_probs=18.0
Q ss_pred CeeecccccCCCCCeEEEeecCCCccccC
Q psy17953 1 MIKITKWWLCPKDRRVRLLLSKGHSCYRP 29 (234)
Q Consensus 1 ~~~~~~~~gVlt~gRVrLLLskG~scYRP 29 (234)
||+++-... -+|.+.=+.-.||.+|=+
T Consensus 1 MI~v~~~~~--~~g~i~~f~v~GHA~~ae 27 (112)
T d2idla1 1 MIQAVFERA--EDGELRSAEITGHAESGE 27 (112)
T ss_dssp CEEEEEEEC--TTSCEEEEEEESCSSCCC
T ss_pred CEEEEEEEC--CCCCEEEEEEEecCCCCC
Confidence 788776542 244566566669999985
No 9
>d2pp6a1 b.106.1.2 (A:1-93) Gifsy-2 prophage protein STM1035 {Salmonella typhimurium [TaxId: 90371]}
Probab=6.99 E-value=1.1e+02 Score=21.88 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=10.5
Q ss_pred CCCCCeEEEeecCCCccccCCCC
Q psy17953 10 CPKDRRVRLLLSKGHSCYRPRRT 32 (234)
Q Consensus 10 Vlt~gRVrLLLskG~scYRPrr~ 32 (234)
+-+.+|--.|. .+||||++.
T Consensus 45 l~G~~rsLvvF---Ss~ykPrr~ 64 (93)
T d2pp6a1 45 VEGNGKNVVVF---SGNVIPRRG 64 (93)
T ss_dssp ----CEEEEEC---CSSCCCCTT
T ss_pred ccCCceEEEEE---cCCcccCCC
Confidence 33455544554 488999764
No 10
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=5.84 E-value=76 Score=19.93 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=0.0
Q ss_pred CCCCCCCCccCCCchhhhhhh-hC
Q psy17953 67 LTDTTIPRRLGPKRASKIRKL-FN 89 (234)
Q Consensus 67 LTD~tvPrrLGPKRAskIRKL-Fn 89 (234)
|+|+. ..||+|+.++.+- |+
T Consensus 1 L~~Ip---GIG~~~a~~L~~~G~~ 21 (60)
T d2i1qa1 1 LTDLP---GVGPSTAEKLVEAGYI 21 (60)
T ss_dssp CTTST---TCCHHHHHHHHHHTCC
T ss_pred CCCCC---CCCHHHHHHHHHccCC
Done!