RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17953
(234 letters)
>gnl|CDD|185404 PTZ00028, PTZ00028, 40S ribosomal protein S6e; Provisional.
Length = 218
Score = 184 bits (468), Expect = 1e-58
Identities = 99/158 (62%), Positives = 115/158 (72%), Gaps = 11/158 (6%)
Query: 15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
RVRLL KG CYRPRRTGE KRKSVRGCIV +LSVL LV+V+KG QEIPGLTD PR
Sbjct: 72 RVRLLFRKGMKCYRPRRTGEMKRKSVRGCIVGHDLSVLNLVLVKKGPQEIPGLTDGERPR 131
Query: 75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
RLGPKRASKIRKLFNLSK DDVR++V++R + EGK K KAPKIQRL+TP
Sbjct: 132 RLGPKRASKIRKLFNLSKSDDVRKFVVRRKI------EGKNKT----KAPKIQRLVTPQR 181
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKK 172
LQRKR K++ L+ +E+A EY KLL K +K+
Sbjct: 182 LQRKRRYRKTLKKKVLQSREEAKEYQKLLE-EYKNEKR 218
>gnl|CDD|110116 pfam01092, Ribosomal_S6e, Ribosomal protein S6e.
Length = 127
Score = 103 bits (258), Expect = 4e-28
Identities = 47/57 (82%), Positives = 52/57 (91%)
Query: 14 RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDT 70
RVRLLLSKGHSCYRPRR GERKRKSVRGCIVD +LSVL LV+V+KGE++IPGLTD
Sbjct: 71 TRVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDPDLSVLNLVIVKKGEKDIPGLTDD 127
>gnl|CDD|225036 COG2125, RPS6A, Ribosomal protein S6E (S10) [Translation, ribosomal
structure and biogenesis].
Length = 120
Score = 67.7 bits (166), Expect = 1e-14
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 14 RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQE 63
RRVR+LLS G YRPRR GERKRK+VRG I+ ++ + LV+V GE+
Sbjct: 72 RRVRILLS-GGPGYRPRRKGERKRKTVRGNIISPDIVQINLVIVEYGEKP 120
>gnl|CDD|235271 PRK04290, PRK04290, 30S ribosomal protein S6e; Validated.
Length = 115
Score = 43.7 bits (104), Expect = 6e-06
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 14 RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVR 58
R R+LLS G +RP+ GER+RK+VRG + ++ + VV
Sbjct: 71 VRRRILLSGGPG-FRPKEKGERRRKTVRGNTISDDIVQINAKVVE 114
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 40.3 bits (95), Expect = 6e-04
Identities = 21/39 (53%), Positives = 23/39 (58%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
S ++ PAAK PA AP AA APAA K A AAAA
Sbjct: 56 SAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA 94
Score = 39.1 bits (92), Expect = 0.001
Identities = 16/46 (34%), Positives = 17/46 (36%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
+ AA AP P AA A A A A AAAAP
Sbjct: 70 PAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115
Score = 39.1 bits (92), Expect = 0.001
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ A + PA PA AAP PA AA A A A A
Sbjct: 64 AKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA 106
Score = 36.8 bits (86), Expect = 0.008
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ A++ AA APAA APA A A A A AAP P
Sbjct: 45 TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA 87
Score = 36.4 bits (85), Expect = 0.009
Identities = 18/43 (41%), Positives = 19/43 (44%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
A + APAAP AA A AA A A AAAA P
Sbjct: 67 PAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109
Score = 36.0 bits (84), Expect = 0.014
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
+ A++ A+ A A AAPAPA A A A P
Sbjct: 48 AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAA 89
Score = 35.6 bits (83), Expect = 0.017
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 183 SSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+++ + AS+ AA A A PA AA A K AAAA
Sbjct: 47 AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA 95
Score = 35.3 bits (82), Expect = 0.030
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ A + PAA PA AA A AA A AAAA
Sbjct: 69 APAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111
Score = 34.9 bits (81), Expect = 0.031
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 9/47 (19%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGA---------KGAAAA 226
A +PAA A AAP A A AA A +GAAAA
Sbjct: 80 PAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAA 126
Score = 34.9 bits (81), Expect = 0.034
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
+ A P PAA A P PAA A A AA P
Sbjct: 64 AKAPAAPAPAP-PAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAA 107
Score = 33.3 bits (77), Expect = 0.10
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
A++ A KPA AA AAPA A A AAA V P
Sbjct: 77 AAAPAAPPKPAAAAAA-AAAPAAPPAAAAAAAPAAAAVEDEVTP 119
Score = 33.3 bits (77), Expect = 0.11
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ ++ AA A A AA APAA A AAA P
Sbjct: 43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK 85
Score = 31.8 bits (73), Expect = 0.35
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
STA+ AA A AA AAPA A A A AA
Sbjct: 40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA 82
Score = 29.9 bits (68), Expect = 1.3
Identities = 15/43 (34%), Positives = 16/43 (37%)
Query: 188 LSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
+ A A AA AA APAA AA AP P
Sbjct: 33 FADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPP 75
Score = 27.9 bits (63), Expect = 6.3
Identities = 14/41 (34%), Positives = 15/41 (36%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
A P + AA AA A A A A A AAP
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAP 74
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 38.7 bits (91), Expect = 0.002
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
+ A++ A AA APAPAA A A A AA P P
Sbjct: 198 APAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAP 243
Score = 33.6 bits (78), Expect = 0.073
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPV 228
A++ AA PAPAA AA APAA A K A+P
Sbjct: 210 PAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPA 248
Score = 33.3 bits (77), Expect = 0.095
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 189 STASSEPAAKKPAPA-APVTKAAPAPAAQAKGAKGAAAAPVGP 230
A++ AA APA AP AAPA AA A A A P
Sbjct: 205 PAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASP 247
Score = 32.5 bits (75), Expect = 0.16
Identities = 19/41 (46%), Positives = 19/41 (46%)
Query: 194 EPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
E AA PA AA AAPA AA A A AAA P
Sbjct: 193 EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAP 233
Score = 31.3 bits (72), Expect = 0.43
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
A++ A APAA A AA A AA V +P
Sbjct: 81 AAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVP 125
Score = 30.9 bits (71), Expect = 0.58
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 188 LSTASSEPAAKKPAPA-APVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ A + AA PA A AP AA APA A AAAA G
Sbjct: 75 IEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGV 119
Score = 30.6 bits (70), Expect = 0.80
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
++ A APAA AA A A A AA A P
Sbjct: 194 VAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAP 233
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 36.4 bits (85), Expect = 0.009
Identities = 16/39 (41%), Positives = 17/39 (43%)
Query: 192 SSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
S+ A PA AA AAPA AA A K A A
Sbjct: 83 SASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPA 121
Score = 36.0 bits (84), Expect = 0.011
Identities = 18/44 (40%), Positives = 20/44 (45%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTN 232
S A + PAA A AA AA A A +A A A AAP
Sbjct: 85 SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVA 128
Score = 34.5 bits (80), Expect = 0.035
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
+AS AA A A A A AA AK A A AAP P
Sbjct: 83 SASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAP 123
Score = 30.7 bits (70), Expect = 0.60
Identities = 20/42 (47%), Positives = 22/42 (52%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
+ A + AA A AA KAAPAPAA A A AA P P
Sbjct: 93 AAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.1 bits (66), Expect = 2.2
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVG 229
A++ PAA A A A APAA A P G
Sbjct: 97 AAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAG 136
Score = 27.6 bits (62), Expect = 6.0
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 196 AAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
+ APAA AA APAA A A AA P
Sbjct: 85 SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAP 123
>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 155
Score = 35.2 bits (82), Expect = 0.009
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 185 SLRLSTASSEPAAKKPA-PAAPVTKAAPAPAAQAKGAKGAAAAPVGPTN 232
S+R+S A++ P A AA AAPA AA A A AA A
Sbjct: 29 SVRISRAAAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEA 77
Score = 27.1 bits (61), Expect = 6.0
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 195 PAAKKPAPAAPVTKA-APAPAAQAKGAKG 222
P A PA AA A A APAA A A+G
Sbjct: 51 PVAAAPAAAAAAAAAPAAAPAAAAAEAEG 79
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 35.7 bits (83), Expect = 0.015
Identities = 13/59 (22%), Positives = 18/59 (30%)
Query: 172 KAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
K ++ + S +R + PAA A A A A A A A
Sbjct: 262 KVNVGDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSE 320
Score = 30.0 bits (68), Expect = 1.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 189 STASSEPAAKKPAPAAP-VTKAAPAPAAQAKGAKGAAA 225
+ A ++ A PAPAA A APAA+A+G A
Sbjct: 286 AAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAE 323
Score = 28.8 bits (65), Expect = 2.8
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
++ PA AP A +++ A+ A P
Sbjct: 293 EAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATP 332
Score = 28.0 bits (63), Expect = 5.1
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 172 KAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGA 223
K ++ S + A PAA AP A APAA A G
Sbjct: 161 KVNVGDKVSTGSLIMVFEVAGEAPAA------APAAAEAAAPAAAPAAAAGV 206
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 35.1 bits (81), Expect = 0.024
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 195 PAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
PAA APAAP A PAP A A AAA P +
Sbjct: 407 PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446
Score = 27.8 bits (62), Expect = 6.2
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
A++ A P AAP A AA A AA A V
Sbjct: 408 AAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVAL 447
Score = 27.8 bits (62), Expect = 6.7
Identities = 19/49 (38%), Positives = 20/49 (40%)
Query: 186 LRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
LRL AA+ APA T A P AA A AAA P P
Sbjct: 359 LRLLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAP 407
Score = 27.4 bits (61), Expect = 6.9
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
S ++ PAA PAP A AAPA A A A AP P
Sbjct: 412 SAPAAPPAAAPPAPVAAPAAAAPAAAP-AAAPAAVALAPAPP 452
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 34.9 bits (80), Expect = 0.031
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 173 AKEDERKRRRSSSLRLSTASSEPA-AKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
A++ + + ++ PA A +PA A P AA A AA A+ A AA AP
Sbjct: 436 ARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDD 495
Query: 232 NLP 234
P
Sbjct: 496 PPP 498
Score = 28.3 bits (63), Expect = 4.4
Identities = 12/47 (25%), Positives = 14/47 (29%)
Query: 188 LSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
L+ A A AP A APAA A+ A
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAA 479
Score = 27.9 bits (62), Expect = 4.9
Identities = 18/37 (48%), Positives = 18/37 (48%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
A PAA PA AAP A PA A A A AA A
Sbjct: 383 AQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAV 419
Score = 27.5 bits (61), Expect = 8.2
Identities = 19/36 (52%), Positives = 21/36 (58%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
A++ PAA PAPAAP A APAA A AAA
Sbjct: 388 AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAP 423
Score = 27.5 bits (61), Expect = 8.3
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPV 228
A++ A PA A AA A A A + AP
Sbjct: 393 AAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 34.8 bits (80), Expect = 0.039
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 14/101 (13%)
Query: 141 LLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE------ 194
+L LK R + A + + +K + RK+ +S +S + +
Sbjct: 1263 ILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAV 1322
Query: 195 -----PAAKK---PAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
KK PAA KAA PAA K +
Sbjct: 1323 EVSLAERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQSG 1363
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 33.8 bits (77), Expect = 0.055
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 183 SSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVG 229
+S + A+S PA K+ A APV A+PA A G A VG
Sbjct: 192 VASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVG 238
Score = 32.2 bits (73), Expect = 0.20
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 192 SSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
+EPAA + AP + PAP A A A+P T P
Sbjct: 185 RTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATP 227
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 33.8 bits (77), Expect = 0.066
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 192 SSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
+SE ++ P A APAA A+ A+AAP P L
Sbjct: 366 TSEADIEREQPGD---LAGQAPAAHQVDAEAASAAPEEPAALA 405
>gnl|CDD|221459 pfam12200, DUF3597, Domain of unknown function (DUF3597). This
family of proteins is found in bacteria, eukaryotes and
viruses. Proteins in this family are typically between
126 and 281 amino acids in length. The function of this
domain is unknown. The structure of this domain has been
found to contain five helices with a long flexible loop
between helices one and two.
Length = 124
Score = 31.9 bits (73), Expect = 0.10
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 192 SSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ AA PA A AA A AA A AA+ V
Sbjct: 12 EAAAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDVAAV 51
Score = 29.2 bits (66), Expect = 0.91
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 201 APAAPVTKAAPAPAAQAKGAKGAAAAPVGPTN 232
A AAP AAPA A A A AA P +
Sbjct: 14 AAAAPAPAAAPATAPAAAAAAAPAATPPAAAS 45
Score = 27.3 bits (61), Expect = 3.4
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 199 KPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNL 233
A AP A APAA A A A ++
Sbjct: 14 AAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDV 48
Score = 26.9 bits (60), Expect = 4.7
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPV 228
A++ PA AP AA APAA A A V
Sbjct: 12 EAAAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDVAAV 51
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 33.3 bits (77), Expect = 0.10
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 195 PAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
PAA P P P AAPA +AQA A AA AP +P
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP 400
Score = 27.5 bits (62), Expect = 6.2
Identities = 11/47 (23%), Positives = 14/47 (29%)
Query: 188 LSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
L P + PA +A T A A A + P P
Sbjct: 365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAP 411
Score = 27.5 bits (62), Expect = 7.3
Identities = 14/46 (30%), Positives = 16/46 (34%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
S+ PAA A AAP AP A +A LP
Sbjct: 371 PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLP 416
Score = 27.1 bits (61), Expect = 9.8
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 188 LSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
L A AKK PAA +A P +A + A A
Sbjct: 429 LQRAQGATKAKKSEPAAAS-RARPVNSALERLASVRPAPSALE 470
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 33.0 bits (76), Expect = 0.12
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ A++ AA PA AAP AAPAPAA + A A AP P+
Sbjct: 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS 443
Score = 30.7 bits (70), Expect = 0.79
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 178 RKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
R R L ++ + PAA P+ AA AAPAPAA A A A A P
Sbjct: 377 RLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAP 429
Score = 30.3 bits (69), Expect = 0.95
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
+A++ A PAPAA AA APA A A A AP
Sbjct: 399 PSAAAAAPAAAPAPAAAAPAAAAAPAPAA--APQPAPAP 435
Score = 30.3 bits (69), Expect = 0.97
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
A++ PAA A + APAPA A AP G P
Sbjct: 413 AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP 456
Score = 30.0 bits (68), Expect = 1.1
Identities = 18/42 (42%), Positives = 19/42 (45%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTN 232
ASS P + PAAP AAPA A A A A A P
Sbjct: 604 ASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP 645
Score = 29.6 bits (67), Expect = 1.4
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ A+ PAA AP AP A A GA + P
Sbjct: 419 AAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAA 461
Score = 28.4 bits (64), Expect = 3.4
Identities = 18/59 (30%), Positives = 18/59 (30%)
Query: 173 AKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
A E K A APAAP APA A GA A AP
Sbjct: 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707
Score = 28.4 bits (64), Expect = 3.6
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
A++ P+A APAA AA APAA A A AA P
Sbjct: 395 AAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPA 434
Score = 28.4 bits (64), Expect = 4.0
Identities = 17/41 (41%), Positives = 17/41 (41%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
S PAA A AP AAP P A A AA AP
Sbjct: 454 PSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP 494
Score = 28.0 bits (63), Expect = 5.2
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
S+ E AA+ APAAP AAPAPA A A+AAP
Sbjct: 605 SSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPG 646
Score = 28.0 bits (63), Expect = 5.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 194 EPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
AA AAP APAPA G A A P+ P
Sbjct: 418 AAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPP 458
Score = 28.0 bits (63), Expect = 5.6
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
+ A + AA A AAP AAP PA A +
Sbjct: 407 AAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG 452
Score = 27.6 bits (62), Expect = 6.1
Identities = 16/48 (33%), Positives = 17/48 (35%)
Query: 187 RLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
RL A A AP+A A APA A AAA P
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQP 431
Score = 27.3 bits (61), Expect = 7.8
Identities = 14/62 (22%), Positives = 18/62 (29%)
Query: 173 AKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTN 232
+ S + S++PA A P APAP A A AA
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503
Query: 233 LP 234
Sbjct: 504 AG 505
Score = 27.3 bits (61), Expect = 8.7
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
+ A++ A PAPA A A + AAAP
Sbjct: 424 APAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465
Score = 27.3 bits (61), Expect = 8.9
Identities = 12/44 (27%), Positives = 14/44 (31%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
A + A A AP PAPA A + A P
Sbjct: 411 APAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454
>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 130
Score = 31.7 bits (72), Expect = 0.14
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
++ PA P T+A+P AQA AA A P+ +P
Sbjct: 24 PAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMP 69
Score = 26.7 bits (59), Expect = 6.0
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 192 SSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
+ AA PA+ + Q + AA G +P
Sbjct: 23 APAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMP 65
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 32.5 bits (75), Expect = 0.17
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 187 RLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
R+ ++ AA A AA AAPA A A A+ + A
Sbjct: 75 RIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDAL 115
Score = 31.7 bits (73), Expect = 0.29
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
A+ AA A AA A A AA A A +P
Sbjct: 81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSP 117
Score = 30.6 bits (70), Expect = 0.78
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAA 225
+ A + AA A AA A AA A+ + A +
Sbjct: 80 AAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALS 116
Score = 30.2 bits (69), Expect = 0.98
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
A++ AA A AAP A A A Q+ A AA
Sbjct: 83 GAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAAR 120
Score = 28.3 bits (64), Expect = 3.3
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
+ A A AA AA AQA A + + P
Sbjct: 77 DEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSP 117
Score = 27.9 bits (63), Expect = 5.0
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 194 EPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
+ A A AA AA A AA A+ AAA P
Sbjct: 77 DEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSP 117
Score = 27.9 bits (63), Expect = 5.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
+ A++ AA A AA +A A AA+ + AA
Sbjct: 82 AGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAA 119
Score = 27.5 bits (62), Expect = 6.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAA 225
+ A++ AA PA A A + A + A+ AA
Sbjct: 88 AAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAA 124
>gnl|CDD|236507 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional.
Length = 509
Score = 32.5 bits (75), Expect = 0.18
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 192 SSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
S+ PAA APAA + PA + AAA
Sbjct: 376 SAAPAAAAAAPAAKEEEKKPASPWRKYALMALAAA 410
Score = 29.0 bits (66), Expect = 2.2
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 200 PAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
P P V+ AAPA AA A AK P P
Sbjct: 369 PPPPIQVS-AAPAAAAAAPAAKEEEKKPASP 398
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 31.2 bits (71), Expect = 0.21
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 165 IRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAA 224
+++ E K +K + + + TA + KK A A A APAA+A A A
Sbjct: 93 LKVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAE 152
Query: 225 AA 226
Sbjct: 153 EE 154
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 31.8 bits (72), Expect = 0.22
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 178 RKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
R++ ++L ++ + A PA AP P + A A A P P
Sbjct: 10 RRKGLWTTLAIAAVAGASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPP 66
Score = 29.5 bits (66), Expect = 1.4
Identities = 14/44 (31%), Positives = 15/44 (34%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
S+ AA PA P A PA Q A P N P
Sbjct: 48 PSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAP 91
Score = 29.1 bits (65), Expect = 1.8
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
+TA+++PA P P+ APA A N
Sbjct: 35 ATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAA 80
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 31.8 bits (72), Expect = 0.23
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 137 RKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPA 196
+ ++ KKRR + L +RI E + D + ++ E A
Sbjct: 68 KGDKVIHFKKRRRQSSRRTKGHRQLLTLVRITEILASGADASGVKAATG----AGKVEVA 123
Query: 197 AKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNL 233
A+ A A A A A A AAA G +L
Sbjct: 124 AEAAPAKAKKEAAPKAAPAPAAAAAPPAAAAAGADDL 160
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 32.2 bits (73), Expect = 0.25
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 189 STASSEPAAKKPAPAAPVTKA----APAPAAQAKGAKGAAAAPVG-PTNLP 234
S+ A PA A P ++ P PAA AK A AP T P
Sbjct: 191 VAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNP 241
Score = 27.5 bits (61), Expect = 7.2
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 199 KPAPAAPVTKAAPAPA-----AQAKGAKGAAAAPVGP 230
A + P T APA A + A AAAP
Sbjct: 190 SVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAA 226
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 31.4 bits (72), Expect = 0.26
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 151 KRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAA 210
+R EQ A+ + EK+KA ERK + + + ++ + P + +++
Sbjct: 113 QRAEQQAKKRE----AAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELT 168
Query: 211 PAPAAQAKGAKGAAAAPV 228
A + K K A A V
Sbjct: 169 VGQAVKVKAGKSAMDATV 186
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 31.8 bits (72), Expect = 0.29
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ + PAA + P +PA+ A +A P+
Sbjct: 81 TGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPS 123
Score = 30.2 bits (68), Expect = 0.94
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+T +S P PA+P + + APA+ + + +
Sbjct: 89 ATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATA 131
Score = 27.2 bits (60), Expect = 9.4
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 188 LSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+S + P A P + P P+ A A G +AAP
Sbjct: 74 VSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAV 117
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 31.4 bits (71), Expect = 0.37
Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 1/133 (0%)
Query: 99 YVIKRTLP-PKPAKEGKKKVRKLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAA 157
+++R P KE + R Y+ + ++ TL+R R + + R + + A
Sbjct: 271 LILERKYPLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENA 330
Query: 158 EYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQA 217
E K E K K++ ++RR++ ++ + + A A A A A
Sbjct: 331 EIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGL 390
Query: 218 KGAKGAAAAPVGP 230
A P
Sbjct: 391 IDASPNEDTPSEN 403
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 31.6 bits (72), Expect = 0.40
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAA 225
+ +S+PAA APA P A P A+ +G+AA
Sbjct: 289 KSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325
Score = 31.2 bits (71), Expect = 0.44
Identities = 10/48 (20%), Positives = 13/48 (27%)
Query: 187 RLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
A++ PA + PAA A P P P
Sbjct: 269 AAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPP 316
>gnl|CDD|234994 PRK01973, PRK01973, septum formation inhibitor; Reviewed.
Length = 271
Score = 31.2 bits (71), Expect = 0.40
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 176 DERKRRRSSSLRLSTA-SSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPV 228
+ R RR ++ A ++ A PA AA AA APAA A A AP
Sbjct: 102 EARDRRAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPE 155
>gnl|CDD|234465 TIGR04092, LTA_DltD, D-alanyl-lipoteichoic acid biosynthesis
protein DltD. Members of this protein family are DltD,
part of the DltABCD system widely distributed in the
Firmicutes for D-alanylation of lipoteichoic acids. The
most common form of LTA, as in Staphylococcus aureus,
has a backbone of polyglycerolphosphate.
Length = 383
Score = 31.0 bits (71), Expect = 0.43
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 87 LFNLSKEDDVRQYVIKRTL---PPKPAKEGKKKVRKLYKAPKI-----QRLITPVTLQRK 138
L N + ++Y KR L K K + ++KLY K + + P
Sbjct: 148 LKNPKISTETKRYAAKRLLELSVVKSDKILENLLKKLYANGKKLSKFDKVYLEPYYRNLL 207
Query: 139 RHLLALKKRRCLKRKEQAAEYAKLLAIRI---KEKKKAKEDERKR 180
L R LK K++ + AK L + KKA+++ +KR
Sbjct: 208 EKEDDLFSRFKLKYKKKIKKAAKKLPETYDWEELDKKAEKEGKKR 252
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 30.9 bits (70), Expect = 0.48
Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 191 ASSEPAAKKPAPAAPVTK---AAPAPAAQAKGAKGAAAAPVGPT 231
SE A K A A A AP A AK AK A PV T
Sbjct: 242 PPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGT 285
Score = 30.2 bits (68), Expect = 1.0
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
A + A K PA A P A A A +A+ G AAA P
Sbjct: 254 AETNAALKTPATA-PKAAAKNAKAPEAQPVSGTAAAEPAPK 293
Score = 29.8 bits (67), Expect = 1.4
Identities = 14/43 (32%), Positives = 15/43 (34%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+TA A AP A A K A AAAA P
Sbjct: 264 ATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPA 306
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 31.4 bits (71), Expect = 0.49
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ +S A A AP AA A A A A P P
Sbjct: 390 AVGASAVPAVTAVTGAAGAALAPKAAAAA-AATRAEAPPAAPA 431
Score = 29.0 bits (65), Expect = 2.2
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 187 RLSTASSEPAAKKPAPAAP-VTKAAPAPAAQAKGAKGAAAA 226
+ AS E A AP AP PA AA A A GAAAA
Sbjct: 512 APAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAA 552
Score = 29.0 bits (65), Expect = 2.4
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
A++ A VT AA A A A AA P
Sbjct: 386 RAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPP 427
Score = 28.7 bits (64), Expect = 2.9
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
T P PA A A PAP A+A A GA+A P
Sbjct: 363 TGGGAPGGGVPARVA---GAVPAPGARAAAAVGASAVP 397
Score = 28.3 bits (63), Expect = 4.4
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 180 RRRSSSLRLSTASSEPAAKKPAPAAPV----TKAAPAPAAQAKGAKGAAAAP 227
R ++ A++ AA KPA T A A A A A
Sbjct: 567 RGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQ 618
Score = 27.9 bits (62), Expect = 5.8
Identities = 8/41 (19%), Positives = 10/41 (24%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ A A+ V A AAA T
Sbjct: 381 PAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAAT 421
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 30.5 bits (69), Expect = 0.50
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 170 KKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
KAK+ +K + +++ A +E A+K A A A A AA+ + A+ A A
Sbjct: 121 LSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAE 177
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 30.7 bits (70), Expect = 0.52
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 111 KEGKKKVRKLYKA--PKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIK 168
E +KV K + KI + + +R A +K+ K++E+ A+ AKL +
Sbjct: 255 PEVLRKVDKTREEEEEKILKA-----AEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQR 309
Query: 169 EKKKAKEDERKRRR 182
K + KE +++ R+
Sbjct: 310 -KLEEKERKKQARK 322
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 31.2 bits (71), Expect = 0.53
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 177 ERKRRRSSSL-RLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAK 221
ERKR +L + PA PAAPV AAP AA A+
Sbjct: 520 ERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAAAPKAAAATPPAQ 565
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN;
Provisional.
Length = 319
Score = 30.4 bits (68), Expect = 0.72
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 134 TLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLR-----L 188
TLQR+R L +++ L ++ + E + R + + R+ + +S+ + L
Sbjct: 152 TLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLL 211
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAK 218
T + A KP AAPVT+AA AP A+
Sbjct: 212 QTPAHTTAQSKPQQAAPVTRAADAPKPTAE 241
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 30.4 bits (69), Expect = 0.76
Identities = 18/74 (24%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 160 AKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKG 219
A L I A + A PAA P P A AK
Sbjct: 113 APLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAAS----KPTPPAAAKP 168
Query: 220 AKGAAAAPVGPTNL 233
+ A AA PT +
Sbjct: 169 PEPAPAAKPPPTPV 182
>gnl|CDD|215174 PLN02305, PLN02305, lipoxygenase.
Length = 918
Score = 30.7 bits (69), Expect = 0.80
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 71 TIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKV 117
++P R +A R +F SK +R I+ +LPP P+ G K V
Sbjct: 501 SLPER----KAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFV 543
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 28.9 bits (65), Expect = 0.82
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 197 AKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
A K A AAPV AA A AA A +
Sbjct: 53 AIKKAAAAPVAAAAAAAAAAAAAEEEEEEEE 83
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 30.3 bits (68), Expect = 0.86
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 169 EKKKAKEDE---------RKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKG 219
KKKA E + + + R + S +A P PV ++AP P +
Sbjct: 390 VKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQAS 449
Query: 220 AKGAAAAPVGPTNL 233
A A+ +L
Sbjct: 450 APRNVASGKPGVDL 463
>gnl|CDD|240324 PTZ00234, PTZ00234, variable surface protein Vir12; Provisional.
Length = 433
Score = 30.4 bits (68), Expect = 0.90
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 183 SSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAK--GAKGAAA 225
SSS + + + P A++PA A V P+A K GA+GA A
Sbjct: 242 SSSPKTAPSKGSPGAQEPAKTAVVKSPGGIPSAGGKRAGAEGAGA 286
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 30.3 bits (69), Expect = 0.93
Identities = 19/80 (23%), Positives = 28/80 (35%)
Query: 146 KRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAP 205
K+ R + + R+K KK A + + S + A+K A
Sbjct: 474 KKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARAR 533
Query: 206 VTKAAPAPAAQAKGAKGAAA 225
+ A AA K A AAA
Sbjct: 534 QAEKQAAAAADPKKAAVAAA 553
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 30.5 bits (68), Expect = 0.94
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 5/154 (3%)
Query: 74 RRLGPKRASKIRKLFNLSKEDDVRQY-VIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITP 132
RR +A + RK L K ++ ++ K+ K A E KKK + KA + ++
Sbjct: 1267 RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE- 1325
Query: 133 VTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTAS 192
+ K+ A KK+ +K A A+ A + + ++ E ++ + +
Sbjct: 1326 ---EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA 1382
Query: 193 SEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
++ A++ A K A +A K AAAA
Sbjct: 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416
Score = 30.1 bits (67), Expect = 1.2
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 7/148 (4%)
Query: 79 KRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQRK 138
K+A + R + K ++ R R A+E +K +L KA + ++
Sbjct: 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE-ARKADELKKAEEKKKA------DEA 1295
Query: 139 RHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAK 198
+ KK K+K + A+ A + +E KK + +K+ + A +E A
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Query: 199 KPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
A KA A + + K A AA
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
Score = 28.2 bits (62), Expect = 4.4
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 79 KRASKIRKLFNLSK--EDDVRQY--VIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
K+A + +K K E+D ++ + K K A E KKK + KA +
Sbjct: 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA-------- 1436
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
K+ KK K+K + A+ A+ + +E KKA E ++K + + +E
Sbjct: 1437 ---KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
Query: 195 PAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
A KK A A A A +AK A+ A A
Sbjct: 1494 EAKKK-ADEAKKAAEAKKKADEAKKAEEAKKA 1524
Score = 28.2 bits (62), Expect = 4.7
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 3/151 (1%)
Query: 79 KRASKIRKLFNLSK-EDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQR 137
++A + RK K ED + +K+ K E KK + +I++
Sbjct: 1206 RKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265
Query: 138 KRHLLALKKRRCLKRKE--QAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEP 195
R A+K K E +A E K + E+KK ++ +K+ +
Sbjct: 1266 ARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1325
Query: 196 AAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
AKK A AA AA+A A+ AAA
Sbjct: 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356
>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 30.2 bits (68), Expect = 1.1
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 192 SSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
+ P A + AP AAPAP A A A
Sbjct: 15 EATPPAPAASAPAPAA-AAPAPVAAAAPAAAGPRPD 49
Score = 28.3 bits (63), Expect = 4.7
Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 194 EPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
EPA ++ P AP +APAPAA A A AAAAP
Sbjct: 10 EPAKEEATPPAP-AASAPAPAAAAP-APVAAAAP 41
Score = 27.9 bits (62), Expect = 5.6
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
A E PA +AP AA APA A A AA
Sbjct: 12 AKEEATPPAPAASAP-APAAAAPAPVAAAAPAAAGP 46
Score = 27.1 bits (60), Expect = 9.5
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 175 EDERKRRRSSSLRLSTASSE-PAAKKPAPAAPVTKAAPAP 213
E + ++ AS+ PAA PAP A AA P
Sbjct: 7 AKEEPAKEEATPPAPAASAPAPAAAAPAPVAAAAPAAAGP 46
>gnl|CDD|222843 PHA02030, PHA02030, hypothetical protein.
Length = 336
Score = 29.9 bits (67), Expect = 1.1
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPA----------PAAQAKGAKGAAAAPVGP 230
A S A PA AA V +AAP+ P A AAP P
Sbjct: 275 DAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVLPDVPQVAPVAAPAAPEVP 325
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 28.0 bits (63), Expect = 1.2
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 193 SEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPV 228
+ +AK A AA A A AA A A AA
Sbjct: 40 ANGSAKLSAAAA-----AAAAAAAAAAAAAAAEEEK 70
Score = 28.0 bits (63), Expect = 1.5
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 187 RLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAK 221
++ S++ +A A AA AA A AA+ + +
Sbjct: 38 LIANGSAKLSAAAAAAAAAAAAAAAAAAAEEEKKE 72
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 30.0 bits (67), Expect = 1.2
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 172 KAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
+A ED+ + + PAPAAP +AAP P A A AA AP
Sbjct: 60 RAPEDDTVEVGGVLAIIGEPGEAGSE--PAPAAPEPEAAPEPEAPAPAPTPAAEAP 113
Score = 27.7 bits (61), Expect = 5.7
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
E A + APA T AA APA A A G+ A
Sbjct: 91 PEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGGSGEA 126
Score = 27.3 bits (60), Expect = 8.4
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVG 229
S + + AP AP PAA+A A G
Sbjct: 84 SEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGGSG 124
>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional.
Length = 670
Score = 30.1 bits (68), Expect = 1.2
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 195 PAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNL 233
PV K A A + + A T++
Sbjct: 242 VEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSESTSI 280
Score = 29.3 bits (66), Expect = 1.8
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGA 223
S + P +A + K A+ +
Sbjct: 242 VEVSPKISVPPVLKLAAEQAPAGRVEREKTARSS 275
Score = 29.3 bits (66), Expect = 2.0
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
T E + K P A APA + + K A ++
Sbjct: 239 TEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSS 275
Score = 27.8 bits (62), Expect = 5.7
Identities = 6/43 (13%), Positives = 10/43 (23%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTN 232
A + +P V A QA + +
Sbjct: 234 KAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSE 276
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 29.8 bits (68), Expect = 1.2
Identities = 13/48 (27%), Positives = 14/48 (29%)
Query: 187 RLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
+ AA A PAPAA A A AAA
Sbjct: 75 VIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAA 122
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 28.5 bits (64), Expect = 1.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 196 AAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
AA+ PA AA AA A A A+ A
Sbjct: 57 AAEAPAAAAAAGAAAAAAAGAEAAAEADEAE 87
Score = 28.1 bits (63), Expect = 1.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 188 LSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAK 221
+ A+ PAA A AA A AA+A A+
Sbjct: 54 IKNAAEAPAAAAAAGAAAAAAAGAEAAAEADEAE 87
Score = 26.2 bits (58), Expect = 8.8
Identities = 11/25 (44%), Positives = 11/25 (44%)
Query: 203 AAPVTKAAPAPAAQAKGAKGAAAAP 227
A AA A AA A A AAA
Sbjct: 58 AEAPAAAAAAGAAAAAAAGAEAAAE 82
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 29.6 bits (67), Expect = 1.4
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNL 233
+ + A PAPA + A +QA A AP P
Sbjct: 189 SQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATP 231
Score = 28.5 bits (64), Expect = 3.1
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
A PA A AAP P QA + AA
Sbjct: 214 QANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251
Score = 28.5 bits (64), Expect = 3.1
Identities = 11/44 (25%), Positives = 14/44 (31%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTN 232
A S+ A AP A P AA + + P N
Sbjct: 209 VVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252
>gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.
Length = 860
Score = 29.9 bits (68), Expect = 1.4
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 186 LRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPV 228
LR + E A++PAP A AAPA AA A AAA
Sbjct: 526 LREDKPAREVVAERPAPPATAEPAAPAAAAAAAATAAAAAKAE 568
Score = 29.1 bits (66), Expect = 2.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 202 PAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
PA V PAP A A+ A AAAA T
Sbjct: 531 PAREVVAERPAPPATAEPAAPAAAAAAAAT 560
Score = 28.3 bits (64), Expect = 4.1
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 185 SLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
S R A + + P P K AA A+ A AAA LP
Sbjct: 183 SGRTMAAIAAGKGRAPKPFM-TPKGNAGLAAAARAAAAAAAKKAKKKALP 231
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.5 bits (66), Expect = 1.7
Identities = 19/91 (20%), Positives = 38/91 (41%)
Query: 136 QRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEP 195
Q + L ++ + ++++QA E K + K++++ ++ + ++
Sbjct: 100 QERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAE 159
Query: 196 AAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
AAK A A KA A A + A AA
Sbjct: 160 AAKLKAAAEAKKKAEEAAKAAEEAKAKAEAA 190
Score = 28.8 bits (64), Expect = 2.5
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 136 QRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-----KKKAKEDERKRRRSSSLRLST 190
Q+K+ A K K +AA AK A + K KA+ K++ + + +
Sbjct: 145 QKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAA 204
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
++ A+ A A +AA A A+ K AA A
Sbjct: 205 EKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKA 240
>gnl|CDD|225340 COG2719, SpoVR, Uncharacterized conserved protein [Function
unknown].
Length = 495
Score = 29.3 bits (66), Expect = 1.7
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 67 LTDTTIPRRLGPKRAS--KIRKLFNLSKEDDVRQYV-IKRTLPPKPAKEGKKKVRKLYKA 123
+ + + R PK+ S + R +E Q + RTLP KP + K R+
Sbjct: 168 IMEYGVDRYKRPKKISSEEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARRFPSE 227
Query: 124 P 124
P
Sbjct: 228 P 228
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 28.0 bits (63), Expect = 1.7
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 188 LSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAK 221
+ A++ P A A AA AA A A + K +
Sbjct: 54 IKKAAAAPVAAAAAAAAA---AAAAAAEEKKEEE 84
Score = 27.6 bits (62), Expect = 2.1
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 197 AKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
A K A AAPV AA A AA A A
Sbjct: 53 AIKKAAAAPVAAAAAAAAAAAAAAAEEKKEE 83
>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional.
Length = 361
Score = 29.3 bits (66), Expect = 1.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVG 229
A +P P AP + A APAA A A +++ G
Sbjct: 249 LAPGVLEGSEPTPTAPSSAPATAPAAAAPQAAATSSSASG 288
Score = 29.3 bits (66), Expect = 2.0
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 188 LSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVG 229
L + P A APA AAP AA + A G VG
Sbjct: 254 LEGSEPTPTAPSSAPATAPAAAAPQAAATSSSASGNFVVQVG 295
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 29.6 bits (66), Expect = 1.8
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 143 ALKKRRCLKRKEQAAEYAKLLAIRIKEKKK-AKEDERKRRRSSSLRLSTASSEPAAKKPA 201
++K RK K A R KKK AK+ K+ + A+++ K A
Sbjct: 966 GIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKA 1025
Query: 202 PAAPVTKAAPAPAAQAKGAKGAAA 225
PA V + A A K A+ AA
Sbjct: 1026 PAKKVARKPAAKKAAKKPARKAAG 1049
Score = 28.4 bits (63), Expect = 4.0
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 154 EQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKA-APA 212
+E A+ A + + + ++ S++ + A+ KK A AP KA A
Sbjct: 950 AAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKK 1009
Query: 213 PAAQAKGAKGAAA 225
AA+ AK A
Sbjct: 1010 AAAKKAAAKKKVA 1022
Score = 28.0 bits (62), Expect = 5.3
Identities = 11/39 (28%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 196 AAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
A +K V KAA AA K A A
Sbjct: 973 AVRKTVRR-SVKKAAATRAAMKKKVAKKAPAKKAAAKKA 1010
Score = 27.6 bits (61), Expect = 6.5
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 165 IRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAK--GAKG 222
+ +K + +K + + + + AKK A K A A AK AK
Sbjct: 970 VAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKK 1029
Query: 223 AAAAPV 228
A P
Sbjct: 1030 VARKPA 1035
>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria
(DUF2076). This domain, found in various hypothetical
prokaryotic proteins, has no known function. The domain,
however, is found in various periplasmic ligand-binding
sensor proteins.
Length = 234
Score = 28.9 bits (65), Expect = 1.9
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 155 QAA---EYA-KLLAIRIKEKKKAKEDERKRRRSSSL-------RLSTASSEPAAKKPAPA 203
Q E A K RI+E + + + + L + PA + PAP
Sbjct: 48 QTILVQEAALKQANARIEELEAQAQHPQSQSSGGFLSGMFGGGAPRPPPAAPAVQPPAPP 107
Query: 204 APVTKAAPAPAAQAKGAKGAAAAPVG 229
A + P+ Q G + A P
Sbjct: 108 ARPGWGSGGPSQQGAGQQPGYAQPGP 133
>gnl|CDD|183757 PRK12800, fliF, flagellar MS-ring protein; Reviewed.
Length = 574
Score = 29.2 bits (65), Expect = 2.0
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 195 PAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
P A +P P AA A G AAA PT
Sbjct: 318 PGATSNSPGQPPAPAAAGAPGTPAAANGQAAAAAAPT 354
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 29.4 bits (66), Expect = 2.0
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 182 RSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
RS + AA++ A +AAP PAA A PV P
Sbjct: 36 RSLVAEGAAGPVAKAAEQM-AAPEAAEAAPLPAAAESIASPEVPPPVPP 83
Score = 27.5 bits (61), Expect = 8.2
Identities = 13/43 (30%), Positives = 14/43 (32%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
S P PA A A A A A A PV P+
Sbjct: 74 SPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPS 116
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 29.4 bits (66), Expect = 2.1
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 121 YKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKR 180
Y+A K +RL+ +TL + L Q + A + K
Sbjct: 342 YRASKNKRLLVELTLIQLAQL------------TQKGDDASGGRGPKQHIKPVFTQPAAA 389
Query: 181 RRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ S+ ++ S ++ P+AP + PA AA PV P
Sbjct: 390 PQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPP 440
Score = 27.4 bits (61), Expect = 7.4
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 174 KEDERKRRRSSSLRLSTASSEPAAKKPAPAAPV-------TKAAPAPAAQAKGAKGAAAA 226
K D+ R + ++PAA AA + AA P+A + A
Sbjct: 365 KGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTP 424
Query: 227 PVGPTNLP 234
P + P
Sbjct: 425 PTVSVDPP 432
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 28.9 bits (65), Expect = 2.2
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 186 LRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
L ++ K T AA A AA A + +P
Sbjct: 74 LEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSP 115
>gnl|CDD|224000 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains) [DNA
replication, recombination, and repair].
Length = 1139
Score = 29.4 bits (66), Expect = 2.3
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 12/105 (11%)
Query: 79 KRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQRK 138
K K+ N + D +++ K K+ K+ + L + P
Sbjct: 257 KWIEKLSAWDNFERLDKALPTKLEKIFFQKKLKKKTKEAKLLARPPLHAEF----EEIEN 312
Query: 139 RHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRS 183
R LLA + R R + + L R D KR+R+
Sbjct: 313 RILLADELLRLAPRLRALLKLLEELIERY--------DAEKRQRN 349
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 28.9 bits (65), Expect = 2.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 195 PAAKKPAPAAPVTKAAPAPAAQAKGAKGA 223
PA + PAAPVT+A AP +A+ K
Sbjct: 155 PAPVRTQPAAPVTQAVEAPKVEAEKEKEQ 183
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 28.3 bits (63), Expect = 2.5
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 175 EDERKRRRSSSLRLSTASSEPAAKKPAPA-APVTKAAPAPAAQAKGAKGAAAA 226
E + + L + ++ + PAPA AP +AP P A A A A+A
Sbjct: 30 EGKTYEVEAKGLGIDLSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASA 82
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 29.0 bits (66), Expect = 2.6
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 158 EYAKLLAIRIKE--KKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAA 215
E AK L + KE +K + + SS++ A E A ++ A A A
Sbjct: 8 ELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAE 67
Query: 216 QAKGAKGAAAAPVGP 230
+ AK AAA
Sbjct: 68 AEEEAKAEAAAAAPA 82
Score = 27.5 bits (62), Expect = 8.1
Identities = 19/77 (24%), Positives = 25/77 (32%)
Query: 158 EYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQA 217
E K L I +K E+E R+ + + A + A A A A AA
Sbjct: 22 EKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAP 81
Query: 218 KGAKGAAAAPVGPTNLP 234
AAA P
Sbjct: 82 AEEAAEAAAAAEAAARP 98
>gnl|CDD|189038 cd09868, PIN_XPG, PIN domain of Xeroderma pigmentosum
complementation group G (XPG) nuclease, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. The Xeroderma pigmentosum
complementation group G (XPG) nuclease plays a central
role in nucleotide excision repair (NER) in cleaving DNA
bubble structures or loops. XPG is a member of the
structure-specific, 5' nuclease family that catalyzes
hydrolysis of DNA duplex-containing nucleic acid
structures during DNA replication, repair, and
recombination. These nucleases contain a PIN (PilT N
terminus) domain with a helical arch/clamp region (I
domain). In XPG PIN domains, this arch region can be
quite variable and extensive (400 - 800 residues) in
length and is required for NER activity and for
efficient processing of bubble substrates. Inserted
within the PIN domain of these 5' nucleases is a H3TH
(helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this group
also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+).
Length = 249
Score = 28.3 bits (64), Expect = 2.8
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 138 KRHLLALKKRRCLKRKEQAAEYA-KLLAIRIKEKKKAKEDERKRRRSSS 185
KR LA ++++ K + A + A KLLA ++K+ + +++ R +
Sbjct: 84 KRRTLAKRRQQREKAEINAKKTAEKLLASQLKKSAVKSQQQQQERDADE 132
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 28.7 bits (64), Expect = 2.9
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 162 LLAIRIKEKKKA--KEDERKRRRSSSLRLSTASSEPAAKK-PAPAAPVTKAAPAPAAQAK 218
L A+ KKA + + +S + +A+ + + KK A KAA A AK
Sbjct: 191 LAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAK 250
Query: 219 GAKGAAAA 226
AK A
Sbjct: 251 KAKKTAKK 258
>gnl|CDD|165268 PHA02962, PHA02962, hypothetical protein; Provisional.
Length = 722
Score = 28.7 bits (64), Expect = 2.9
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 21/66 (31%)
Query: 84 IRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQRKRHLLA 143
I F+L ED V++ +I + LP EGK+K+ LI PV LL
Sbjct: 671 IDNAFDLELEDVVKEIIIIQKLP-----EGKRKL----------SLIKPVN------LLD 709
Query: 144 LKKRRC 149
L KR C
Sbjct: 710 LCKRIC 715
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 28.7 bits (64), Expect = 2.9
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 143 ALKKRRCLKRKEQAAEYA-----KLLAIRIKEKKKAKEDERKRRRSSSL-----RLSTAS 192
R L+R + A+ K LA ++ KA+ +ER+++ + +L TA
Sbjct: 223 LKASLRKLERAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAK 282
Query: 193 SEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
++ AK+ A AA TK A A AA AK A+ A AA
Sbjct: 283 ADAEAKRAAAAA--TKEA-AKAAAAKKAETAKAA 313
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 28.6 bits (64), Expect = 3.1
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 168 KEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
EK K + ++ R + R SS+P + AA + P A+ + +
Sbjct: 44 SEKAKPPKKPKEASRPGTPRNPKKSSKPT---ESSAASSEEKPAKPRKSAESTRSSHPKS 100
Query: 228 VGPTNLP 234
P+
Sbjct: 101 KAPSTES 107
>gnl|CDD|236851 PRK11114, PRK11114, cellulose synthase regulator protein;
Provisional.
Length = 756
Score = 28.7 bits (65), Expect = 3.1
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 179 KRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
+R+ + L AAP T+ A Q A AAAAPV P
Sbjct: 1 MKRKLTWLCALALGMSAFPAFATAAAPATQPLANAAGQVMPAAPAAAAPVVAQAAP 56
>gnl|CDD|113156 pfam04375, HemX, HemX. This family consists of several bacterial
HemX proteins. The hemX gene is not essential for haem
synthesis in B. subtilis. HemX is a polytopic membrane
protein which by an unknown mechanism down-regulates the
level of HemA.
Length = 372
Score = 28.3 bits (63), Expect = 3.5
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPV 228
S+ +E A++ ++PV AP PAA++ GA G AA +
Sbjct: 1 SSVPAETASQTTVTSSPV---APGPAAKSGGATGLAALAL 37
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 28.4 bits (63), Expect = 3.9
Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 129 LITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRL 188
+++P+ R+ + L KRR + + L+ K+A RKRR +
Sbjct: 336 VVSPLPRPRQHYPLGFPKRR--RPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAAT 393
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
A + PAAPV + P PA A P P
Sbjct: 394 PFARGPGGDDQTRPAAPVPASVPTPAPTP-VPASAPPPPATPL 435
>gnl|CDD|235169 PRK03879, PRK03879, ribonuclease P protein component 1; Validated.
Length = 96
Score = 26.8 bits (60), Expect = 4.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 78 PKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLY 121
PK + F L ++D V+ V R L +P KKK++KL
Sbjct: 55 PKDGATFE--FELGRDDVVKVKVDGRLLVGRPEDRLKKKIKKLR 96
>gnl|CDD|165452 PHA03181, PHA03181, helicase-primase primase subunit; Provisional.
Length = 764
Score = 28.3 bits (63), Expect = 4.0
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 142 LALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASS-----EPA 196
LA K LK E E+ + I+ KE + +E + R+ +L +++ E
Sbjct: 185 LAHIKLSALKNIETIPEFDARIEIQTKEDRFYREYKSVSSRTKKTKLHNSNNIFHVVEKP 244
Query: 197 AKKPAPAAPVTKAAPAPAA 215
APV P +
Sbjct: 245 LILDGSQAPVRTLTLVPTS 263
>gnl|CDD|225784 COG3245, CycB, Cytochrome c5 [Energy production and conversion].
Length = 126
Score = 27.1 bits (60), Expect = 4.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 190 TASSEPAAKKPAPAAPVTKAA-PAPAAQAKGAKGAA 224
A E AA A A V AA PA AA A+G +G
Sbjct: 17 AACGEAAAPALAAAPAVAAAAVPAAAAAAQGPEGKK 52
>gnl|CDD|217689 pfam03717, PBP_dimer, Penicillin-binding Protein dimerisation
domain. This domain is found at the N terminus of Class
B High Molecular Weight Penicillin-Binding Proteins. Its
function has not been precisely defined, but is strongly
implicated in PBP polymerisation. The domain forms a
largely disordered 'sugar tongs' structure.
Length = 167
Score = 27.7 bits (62), Expect = 4.1
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 38 KSVRGCIVDSNLSVLA-------LVVVRKGEQEIPGLTDTTIPRRLGPKRASKIRKLFNL 90
+ RG I+D N VLA + V K ++ + + LG +I K
Sbjct: 2 PAPRGEILDRNGRVLATNVPVYSVYVDPKEVEDKKAEEAEKLAKILGLD-PEEILKKLKE 60
Query: 91 SKEDDVRQYVIKRTLPPKPAKE 112
V+KR L P+ A
Sbjct: 61 KDAKSYEPVVLKRNLSPEEAAR 82
>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated.
Length = 423
Score = 28.1 bits (63), Expect = 4.4
Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 3/69 (4%)
Query: 167 IKEKKKAKEDERKRRRSS---SLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGA 223
+ + R ++ S + A+ AA P A AK A
Sbjct: 192 VTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATG 251
Query: 224 AAAPVGPTN 232
A
Sbjct: 252 EPAANAAKA 260
>gnl|CDD|234184 TIGR03362, VI_chp_7, type VI secretion-associated protein, VC_A0119
family. This protein family is one of two related
families in type VI secretion systems that contain an
ImpA-related N-terminal domain (pfam06812) [Protein
fate, Protein and peptide secretion and trafficking,
Cellular processes, Pathogenesis].
Length = 301
Score = 27.7 bits (62), Expect = 4.5
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNL 233
+ AA P AP + APA A A P P ++
Sbjct: 1 QRAQNEAAPAAVPTAPASAPAPATTA------AAPQPPEPPASV 38
>gnl|CDD|140267 PTZ00240, PTZ00240, 60S ribosomal protein P0; Provisional.
Length = 323
Score = 28.0 bits (62), Expect = 4.6
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 159 YAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQA 217
+ LLA+ + + +E K R ++L AA + A AAP AA A A +
Sbjct: 252 FKNLLAVSVATSYEFEEHNGKELREAALEGLLGGGGSAAAEAAAAAP--AAASAAAKEE 308
>gnl|CDD|220944 pfam11018, Cuticle_3, Pupal cuticle protein C1. Insect cuticles
are composite structures whose mechanical properties are
optimised for biological function. The major components
are the chitin filament system and the cuticular
proteins, and the cuticle's properties are determined
largely by the interactions between these two sets of
molecules. The proteins can be ordered by species.
Length = 164
Score = 27.6 bits (61), Expect = 4.6
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 182 RSSSLRLSTASSEPAAKKPAP--AAPVTKAAPAPA----AQAKGAKGAAAAPVGP 230
R S R+S + +PA K A AAP AA AP A A A AAA
Sbjct: 37 RKSDTRISNNAYQPAYAKTAYAYAAPAVYAAAAPVYAAHAYAAPAVHYAAAAHYA 91
Score = 26.5 bits (58), Expect = 9.2
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 189 STASSEPAAKKPAP-AAPVTKAAPAPAAQAKGAKGAAAAPVG 229
+ A+ P K AAP A AP + AA V
Sbjct: 110 AYAAPAPVYKTAYAAAAPAVYAHAAPVVATATVAYSPAAAVS 151
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 28.2 bits (63), Expect = 4.9
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
A + PAA +PAPA AA PA A A A+A
Sbjct: 412 APARPAAARPAPAPAPPAAAAPPARSADPAAAASAGD 448
Score = 27.8 bits (62), Expect = 6.3
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 190 TASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGP 230
+ PAA PA A PV AAPA A A+ A A
Sbjct: 392 PTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAA 432
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 28.2 bits (63), Expect = 4.9
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 188 LSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
L ++ A P AP+ A APA A AA P
Sbjct: 48 LGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVP 87
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 27.7 bits (61), Expect = 5.3
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
S + ++ + A T A PAA AA+AP
Sbjct: 128 SASITKTSNGSDAATTSST--ANTPAAAKVLKANAASAP 164
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 28.1 bits (62), Expect = 5.4
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 151 KRKEQAAEYAKLLAI--------RIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAP 202
K++E+A E AK A R KEK+K +E ER+R + + S++S E +P
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMSEPQL 638
Query: 203 AAPVTKAAP 211
+ P
Sbjct: 639 SGPAHMRPS 647
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 27.7 bits (61), Expect = 5.5
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 115 KKVRKLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAK 174
K ++ K K R R + L ALK + K K A A+ LA KKKAK
Sbjct: 233 KSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNK--AEIEAEALASATAVKKKAK 290
Query: 175 EDERK 179
E +K
Sbjct: 291 EVMKK 295
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 28.0 bits (62), Expect = 5.6
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 200 PAPAAPVTKAAPAP--AAQAKGAKGAAAAPVGP 230
APAAPV A +P + A A A + P
Sbjct: 1145 VAPAAPVLPAVVSPPVVSAAPAQSVATAVAMAP 1177
Score = 28.0 bits (62), Expect = 6.1
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 191 ASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
A+ P K APV + + A A + PV + P
Sbjct: 1123 ATQAPVIKSVVTQAPVVQVTISVAPAAPVLPAVVSPPV-VSAAP 1165
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 27.5 bits (61), Expect = 5.6
Identities = 16/68 (23%), Positives = 22/68 (32%)
Query: 160 AKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKG 219
A +A + A + K R S + A+ +P A A T AAP P A
Sbjct: 136 APAVAAAAAQAAAAPKAPAKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTA 195
Query: 220 AKGAAAAP 227
Sbjct: 196 TPAKKTTK 203
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 27.7 bits (62), Expect = 5.9
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 190 TASSEPAAKKPAPAAPVTKA-APAPAAQAKGAKGAAAAPV 228
T +PA KKPA T A PA K GAA+A
Sbjct: 198 TPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASARA 237
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 27.8 bits (62), Expect = 6.0
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 11/96 (11%)
Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
+ R +++AL R E + A + + A+ E K + A +E
Sbjct: 845 VPRADYVVALGDGRV----EFSGSSADFMRTSLYATLAAELKENKDSKEGD-----ADAE 895
Query: 195 PAAKKPAPAAPVT--KAAPAPAAQAKGAKGAAAAPV 228
A AP V A+G GAA
Sbjct: 896 VAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAA 931
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 27.6 bits (62), Expect = 6.0
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 175 EDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
+ S + ++ A ++ A A A A AA AKG +AA T
Sbjct: 1 AESNGEPLSKNALKKRLKAKQAEEEKA--AKEEAKAAAAAAAAKGRSRKSAAADDET 55
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 27.7 bits (61), Expect = 6.1
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 177 ERKRRRSSSLRLSTASSEPAAKKPA----PAAPVTKAAPAPAAQAKGAKGAAAAP 227
+ + + + ++ +S+ PA P+ P P A PAP + A P
Sbjct: 403 QGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMP 457
>gnl|CDD|223045 PHA03326, PHA03326, nuclear egress membrane protein; Provisional.
Length = 275
Score = 27.4 bits (61), Expect = 6.5
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 154 EQAAEYAKLL-AIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPA 212
E +EY LL I K+ + + R R SLR +S AA A A A
Sbjct: 153 ENESEYIALLREIYAKKARSGPQHLRSHRSCGSLR-DRSSHALAAAPFGSATRTGAKASA 211
Query: 213 PAAQAKGA------KGAAAAPVGPT 231
P G+A PV
Sbjct: 212 PPTSDASINQRRRRAGSARFPVAFW 236
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 27.5 bits (61), Expect = 6.7
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 153 KEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPA 212
++AA AK A + KKA + +K+ + + + A ++ A+ A +A
Sbjct: 160 AKKAAAEAKKKAE-AEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Query: 213 PAAQAKGAKGAAAA 226
AA+AK A AAA
Sbjct: 219 AAAEAKAAAAKAAA 232
Score = 27.1 bits (60), Expect = 9.4
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 145 KKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAA 204
KK+ + +AA AK A +KK A E ++K A++E A AA
Sbjct: 184 KKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK-----------AAAEAKAAAAKAAA 232
Query: 205 PVTKAAPAPAAQAKGAKGAAAA 226
AA AA K AAA
Sbjct: 233 EAKAAAEKAAAAKAAEKAAAAK 254
>gnl|CDD|178001 PLN02373, PLN02373, soluble inorganic pyrophosphatase.
Length = 188
Score = 27.0 bits (60), Expect = 6.8
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 76 LGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRL 129
L P R ++IR+ F K+++ ++ + LP + A E + LY ++ L
Sbjct: 133 LPPHRLAEIRRFFEDYKKNENKEVAVNDFLPAEAAIEAIQYSMDLYAEYIVESL 186
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 27.6 bits (60), Expect = 7.1
Identities = 29/98 (29%), Positives = 42/98 (42%)
Query: 137 RKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPA 196
RK+ L +K R R+E AA A +K A ++ + ++ + + A ++ A
Sbjct: 174 RKQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAA 233
Query: 197 AKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
A AA KAA APA A AAA P P
Sbjct: 234 APPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPP 271
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 27.7 bits (61), Expect = 7.5
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 132 PVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTA 191
+ H K++R + KE+ E KL+ ++KE++++ E + S A
Sbjct: 454 VYPGHPQEHGHERKRKRGGELKEELIETLKLVK-KLKEEQESLAKELEATAHKSEIKKIA 512
Query: 192 SSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
SE AA + + A A K A
Sbjct: 513 ESEFKNAGAKTAAANIEPNCSADAAAPATKRARPET 548
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that
may be functionally important.
Length = 115
Score = 26.2 bits (58), Expect = 7.6
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 192 SSEPAAKKPAPAAPVTKAA--PAPAAQAKGAKGAAAAPVGPT 231
SEPAA P P PV A P+P A A+ P P
Sbjct: 66 PSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPPLPPPRPQ 107
>gnl|CDD|236590 PRK09613, thiH, thiamine biosynthesis protein ThiH; Reviewed.
Length = 469
Score = 27.5 bits (62), Expect = 7.9
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
Query: 16 VRLLLSKGH------SCYRPRRTGER 35
+R L G+ +CYR RTG+R
Sbjct: 370 IRELCEMGYIPSFCTACYRLGRTGDR 395
>gnl|CDD|234415 TIGR03955, rSAM_HydG, [FeFe] hydrogenase H-cluster radical SAM
maturase HydG. This model describes the radical SAM
protein HydG. It is part of an enzyme metallocenter
maturation system, working together with GTP-binding
protein HydF and another radical SAM enzyme, HydE, in
H-cluster maturation in [FeFe] hydrogenases [Protein
fate, Protein modification and repair].
Length = 471
Score = 27.4 bits (61), Expect = 8.0
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 13 DRRVRLLLSKGH------SCYRPRRTGER 35
D V L+ G+ +CYR RTG+R
Sbjct: 369 DEVVNWLMDLGYIPSFCTACYREGRTGDR 397
>gnl|CDD|177311 PHA01547, PHA01547, putative internal virion protein A.
Length = 206
Score = 26.9 bits (59), Expect = 8.2
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 185 SLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGA 220
S R A S AK+ A A + AA A AA KGA
Sbjct: 59 SYRKQAAKSLQEAKRMAMLAGGSAAAQAAAAGVKGA 94
>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional.
Length = 270
Score = 27.1 bits (60), Expect = 8.3
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 168 KEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAK 218
+ + A++ +R R ++ + A + +A A A A A A+AK
Sbjct: 156 RARHDARQARLRREREAAEARAAARAAASAAAAAAEASAAAAPAADDAEAK 206
>gnl|CDD|190502 pfam03014, SP2, Structural protein 2. This family represents
structural protein 2 of the hepatitis E virus. The high
basic amino acid content of this protein has lead to the
suggestion of a role in viral genomic RNA encapsidation.
Length = 619
Score = 27.3 bits (60), Expect = 8.8
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 178 RKRRRSSSLRLSTASSEPAA-----KKPAPAAPVTKAAPAP 213
R+ RR S P PA AAP+T PA
Sbjct: 37 RQPRRPLGSAWRDQSQRPEGAPRRRSTPAGAAPLTAVVPAA 77
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 27.2 bits (60), Expect = 8.8
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 179 KRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAK 218
+ RR + ++ A+ P AA +A AA +
Sbjct: 464 RPRRKPRVEGEADAAAAGAETPVVAAAAAQAPGVVAADGE 503
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 27.2 bits (61), Expect = 9.0
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 151 KRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPV 206
+ +E+ EY I EKK ++ +K + + A + P P+
Sbjct: 73 EYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEPPL 128
>gnl|CDD|219130 pfam06674, DUF1176, Protein of unknown function (DUF1176). This
family consists of several hypothetical bacterial
proteins of around 340 residues in length. Members of
this family contain six highly conserved cysteine
residues. The function of this family is unknown.
Length = 338
Score = 27.0 bits (60), Expect = 9.1
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 174 KEDERKRRRSSSLRLSTASSEPAAK-KPAPAAPVTKAAPAPAAQA 217
K DE + R + L ++PA+ PAP PV +AAPAP A A
Sbjct: 141 KMDEVQGRVGTVTALVRKGTKPASSVPPAPPLPVIRAAPAPPAAA 185
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 27.1 bits (60), Expect = 9.5
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 189 STASSEPAAKKPAPAAPVTKAA--PAPAAQAKGAKGAAAAPVG 229
S+A+ KP+P P + PA + + K +K +A G
Sbjct: 204 SSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSG 246
>gnl|CDD|215050 PLN00077, PLN00077, photosystem II reaction centre W protein;
Provisional.
Length = 128
Score = 26.2 bits (57), Expect = 9.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Query: 197 AKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPV 228
KK A A V K A A A A A P
Sbjct: 40 EKKAANKADVNKLAGASLLVTSAATMAYAHPA 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.375
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,814,690
Number of extensions: 1132309
Number of successful extensions: 4846
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3716
Number of HSP's successfully gapped: 610
Length of query: 234
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 140
Effective length of database: 6,768,326
Effective search space: 947565640
Effective search space used: 947565640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)