RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17953
         (234 letters)



>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 130

 Score = 29.7 bits (67), Expect = 0.11
 Identities = 11/39 (28%), Positives = 12/39 (30%)

Query: 193 SEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
              AA      AP T  A   A  A     A +  V P 
Sbjct: 14  DSAAASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAPI 52



 Score = 25.1 bits (55), Expect = 4.7
 Identities = 5/38 (13%), Positives = 9/38 (23%)

Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
            +A++ P   +          AP             A 
Sbjct: 14  DSAAASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAP 51


>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
           {Erwinia carotovora [TaxId: 554]}
          Length = 230

 Score = 26.1 bits (56), Expect = 3.7
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 1   MIKITKWWLCPKDRRVRLLLSKGHSCYRPRR 31
           + K   W L    +++  +     +CY   +
Sbjct: 163 LNKAETWALADYYQQLDTVRYHTLTCYNGIK 193


>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
           beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
          Length = 401

 Score = 26.1 bits (57), Expect = 3.8
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 115 KKVRKLYKAPKIQRLITPVTLQRKRHLLALKKRRCLK 151
           +K+++++ + K   L+  + LQR++H   LK  R L+
Sbjct: 33  EKIQEVFSSYKFNHLVPRLVLQREKHFHYLK--RGLR 67


>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio
           parahaemolyticus [TaxId: 670]}
          Length = 185

 Score = 25.7 bits (56), Expect = 4.0
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 130 ITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAK---EDERKR 180
           + P+T +R++ L+ + +      +       +     +K   K K   EDE ++
Sbjct: 102 LPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRK 155


>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 98

 Score = 24.5 bits (53), Expect = 5.4
 Identities = 9/62 (14%), Positives = 26/62 (41%)

Query: 121 YKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKR 180
           +K   +  L+TP  +++      L         +   +YAK++ + + +     E++ ++
Sbjct: 36  WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 95

Query: 181 RR 182
             
Sbjct: 96  PL 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 810,956
Number of extensions: 37276
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 24
Length of query: 234
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,281,736
Effective search space: 194823872
Effective search space used: 194823872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)