Query psy17954
Match_columns 143
No_of_seqs 166 out of 333
Neff 4.2
Searched_HMMs 13730
Date Fri Aug 16 18:38:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17954.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17954hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f23a2 d.26.1.2 (A:78-156) Gr 30.2 9.4 0.00068 23.7 1.3 20 25-44 50-69 (79)
2 d1a62a2 b.40.4.5 (A:48-125) Rh 27.1 32 0.0023 21.7 3.6 49 49-108 7-57 (78)
3 d1grja2 d.26.1.2 (A:80-158) Gr 16.5 1.1E+02 0.008 18.3 4.7 43 3-45 13-69 (79)
4 d1l8na2 d.92.2.2 (A:4-142) alp 13.0 30 0.0022 23.1 1.0 21 35-57 77-97 (139)
5 d1bt0a_ d.15.1.1 (A:) Rub1 {Mo 12.8 84 0.0061 18.1 3.0 22 1-23 1-22 (73)
6 d1jaka2 d.92.2.1 (A:8-150) bet 12.5 55 0.004 21.1 2.2 17 35-53 76-92 (143)
7 d1fl2a2 c.3.1.5 (A:326-451) Al 12.3 13 0.00092 24.5 -1.2 37 16-57 4-40 (126)
8 d1gm5a2 b.40.4.9 (A:106-285) R 10.9 37 0.0027 23.0 0.9 32 72-104 10-41 (180)
9 d1uela_ d.15.1.1 (A:) Ubiquiti 10.1 85 0.0062 19.0 2.5 23 1-24 1-23 (95)
10 d1a77a1 a.60.7.1 (A:209-316) F 9.8 40 0.0029 21.5 0.7 16 78-93 23-38 (108)
No 1
>d2f23a2 d.26.1.2 (A:78-156) GreA transcript cleavage factor, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=30.19 E-value=9.4 Score=23.70 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=14.3
Q ss_pred cccccccccceecCCccCCc
Q psy17954 25 RVFYDKRMGMEVPADSIGDE 44 (143)
Q Consensus 25 ~~f~gKrig~ev~g~~lG~e 44 (143)
++++|++.|++|.-.+-+-.
T Consensus 50 ~ALlGk~~Gd~v~v~~p~g~ 69 (79)
T d2f23a2 50 KALLGHRVGDVLSLDTPKGK 69 (79)
T ss_dssp HHHTTCCTTCEEEEEETTEE
T ss_pred HHHhCCCCCCEEEEEcCCCC
Confidence 35778888888887666654
No 2
>d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=27.10 E-value=32 Score=21.73 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=32.7
Q ss_pred EEEEcCccCCCCcccc--cCCCCCCcccCCCCcCCCcchhhhhcccCCCcCCCceeeEEeec
Q psy17954 49 IVRISGGNDKQGFPMK--QGEIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRT 108 (143)
Q Consensus 49 ~~~ItGGnDkqGFPMk--qGdIpGltd~~vPr~lgpKRaskIRKLf~lsk~ddv~~yvvrr~ 108 (143)
++.|. +|--||--. .+=.|+..|..|| ++-||+ |+|-..|-|.-.| |.|
T Consensus 7 iLei~--~dGyGFLR~~~~~y~~~~~DiyVs-------~s~Irr-fgLR~GD~V~G~v-r~p 57 (78)
T d1a62a2 7 VLEIL--QDGFGFLRSADSSYLAGPDDIYVS-------PSQIRR-FNLRTGDTISGKI-RPP 57 (78)
T ss_dssp EEEEC--TTSCEEEECGGGTTCCCTTCEEEC-------HHHHHH-TTCCTTCEEEEEE-ECC
T ss_pred EEEEc--CCCcEEeECCccCCCCCCcceEEC-------HHHHHH-hCCCcCcEEEEEE-ECC
Confidence 45555 344566554 3357888999987 456665 9999988777666 443
No 3
>d1grja2 d.26.1.2 (A:80-158) GreA transcript cleavage factor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.48 E-value=1.1e+02 Score=18.30 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=22.8
Q ss_pred EEeecCCCCeeEEEEec--Cccc------------ccccccccccceecCCccCCcc
Q psy17954 3 LNISYPATGCQKLVEIA--DEHK------------LRVFYDKRMGMEVPADSIGDEW 45 (143)
Q Consensus 3 lnIS~P~tG~qk~ievd--de~~------------l~~f~gKrig~ev~g~~lG~e~ 45 (143)
+.+-|..++.+..+.+= +|.. -++++|++.||+|.-.+-+-+.
T Consensus 13 V~l~d~~~~~~~~~~iVg~~ead~~~~~IS~~SPlG~ALlG~~~Gd~v~v~~p~g~~ 69 (79)
T d1grja2 13 VTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEV 69 (79)
T ss_dssp EEEEETTTTEEEEEEEECTTTCBGGGTEEESSSHHHHHHTTCBTTCEECC------C
T ss_pred EEEEECCCCCEEEEEEECHHHccccCCeEEeCCHHHHHHhCCCCCCEEEEEcCCCcE
Confidence 44556666766666542 2211 1357889999999877666553
No 4
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.00 E-value=30 Score=23.06 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=14.0
Q ss_pred eecCCccCCcccccEEEEcCccC
Q psy17954 35 EVPADSIGDEWKGYIVRISGGND 57 (143)
Q Consensus 35 ev~g~~lG~e~kGY~~~ItGGnD 57 (143)
..++..|++| ||.++++.++.
T Consensus 77 ~~~~~~l~~E--Gy~l~~~~~~~ 97 (139)
T d1l8na2 77 PLEGTLVHPE--GYVIRSDVDDG 97 (139)
T ss_dssp HHHHTCCSTT--CEEEEECCC--
T ss_pred cccccccCCC--cEEEEEecCCC
Confidence 3455568888 99999876543
No 5
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=12.79 E-value=84 Score=18.09 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=17.7
Q ss_pred CeEEeecCCCCeeEEEEecCccc
Q psy17954 1 MKLNISYPATGCQKLVEIADEHK 23 (143)
Q Consensus 1 MKlnIS~P~tG~qk~ievdde~~ 23 (143)
|++.|-. .+|....++|+....
T Consensus 1 M~I~Vk~-~~G~~~~l~V~~~~t 22 (73)
T d1bt0a_ 1 MLIKVKT-LTGKEIEIDIEPTDT 22 (73)
T ss_dssp CEEEEEC-TTSCEEEEECCTTCB
T ss_pred CEEEEEe-CCCCEEEEEECCCCc
Confidence 8999975 459999999976654
No 6
>d1jaka2 d.92.2.1 (A:8-150) beta-N-acetylhexosaminidase, N-terminal domain {Streptomyces plicatus [TaxId: 1922]}
Probab=12.49 E-value=55 Score=21.13 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=12.9
Q ss_pred eecCCccCCcccccEEEEc
Q psy17954 35 EVPADSIGDEWKGYIVRIS 53 (143)
Q Consensus 35 ev~g~~lG~e~kGY~~~It 53 (143)
.++.+.+++| ||.+.|+
T Consensus 76 ~~~~~~~~~E--~Y~L~I~ 92 (143)
T d1jaka2 76 RLAGGPYGDE--GYRLDSG 92 (143)
T ss_dssp EECCSTTTTT--CEEEEEE
T ss_pred EECCCCCCCc--ceEEEEe
Confidence 3455667888 9999996
No 7
>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}
Probab=12.32 E-value=13 Score=24.51 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=27.7
Q ss_pred EEecCcccccccccccccceecCCccCCcccccEEEEcCccC
Q psy17954 16 VEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGND 57 (143)
Q Consensus 16 ievdde~~l~~f~gKrig~ev~g~~lG~e~kGY~~~ItGGnD 57 (143)
++|++|.+ |.|+-+.-...+| |..|+|-.+-|.||.|
T Consensus 4 L~ipge~~---~~gkGV~yca~cD--~~~~~gk~V~VvGgG~ 40 (126)
T d1fl2a2 4 MNVPGEDQ---YRTKGVTYCPHCD--GPLFKGKRVAVIGGGN 40 (126)
T ss_dssp CCCTTTTT---TBTTTEESCHHHH--GGGGBTCEEEEECCSH
T ss_pred CCCCCHHH---hcCCCEEEEEecC--hhhcCCceEEEEeCCH
Confidence 46777764 8899887765555 6778888888888866
No 8
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.85 E-value=37 Score=22.97 Aligned_cols=32 Identities=28% Similarity=0.590 Sum_probs=23.5
Q ss_pred cccCCCCcCCCcchhhhhcccCCCcCCCceeeE
Q psy17954 72 TDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYV 104 (143)
Q Consensus 72 td~~vPr~lgpKRaskIRKLf~lsk~ddv~~yv 104 (143)
+|...=+..|||++..+.+| ++..-.|+--|.
T Consensus 10 ~~i~~lkGvGpk~~~~L~kl-gI~ti~DLL~~~ 41 (180)
T d1gm5a2 10 TDIQYAKGVGPNRKKKLKKL-GIETLRDLLEFF 41 (180)
T ss_dssp CCSSSSSSCCHHHHHHHHTT-TCCSSGGGTSCC
T ss_pred CChhhcCCcCHHHHHHHHHh-CCCcHHHHHHhC
Confidence 45555678899999999885 777777765444
No 9
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.07 E-value=85 Score=19.05 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=18.4
Q ss_pred CeEEeecCCCCeeEEEEecCcccc
Q psy17954 1 MKLNISYPATGCQKLVEIADEHKL 24 (143)
Q Consensus 1 MKlnIS~P~tG~qk~ievdde~~l 24 (143)
|++.|-.. +|..+.+||+.....
T Consensus 1 M~I~vk~~-~g~~~~l~v~~~~TV 23 (95)
T d1uela_ 1 MQVTLKTL-QQQTFKIDIDPEETV 23 (95)
T ss_dssp CEEEEEET-TCCEEEEECCTTSBH
T ss_pred CEEEEEeC-CCCEEEEEECCCccH
Confidence 89999865 599999999776543
No 10
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.82 E-value=40 Score=21.48 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=11.3
Q ss_pred CcCCCcchhhhhcccC
Q psy17954 78 RRLGPKRASKIRKLFN 93 (143)
Q Consensus 78 r~lgpKRaskIRKLf~ 93 (143)
...|||+|.++=+-|+
T Consensus 23 ~GIGpktA~klIk~~g 38 (108)
T d1a77a1 23 KGIGFKRAYELVRSGV 38 (108)
T ss_dssp TTCCHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHcC
Confidence 4679999987655443
Done!