RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17954
         (143 letters)



>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 108

 Score = 25.3 bits (55), Expect = 1.8
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 29 DKRMGMEVPADSIGDEWKGYIVR-ISGGNDKQGFPMKQGEIPGLTDTTIPRRL 80
          DK+  + +   +I  +WK  ++  +  G   +        + G+T   +  RL
Sbjct: 4  DKQTSINLALSTINGKWKLSLMDELFQG--TKRNGELMRALDGITQRVLTDRL 54


>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 420

 Score = 25.1 bits (53), Expect = 4.4
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 84  RASKIRKLFNLSKEDDV 100
           ++S IR++   + + D 
Sbjct: 24  KSSIIREILKFAADKDA 40


>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase,
           MSAT {Thermococcus profundus [TaxId: 49899]}
          Length = 403

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 84  RASKIRKLFNLSKEDDV 100
           +AS++R+L  L +  DV
Sbjct: 15  KASEVRELLKLVETSDV 31


>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823
          {Porphyromonas gingivalis [TaxId: 837]}
          Length = 102

 Score = 23.7 bits (51), Expect = 6.4
 Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 25 RVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQGEIPGLTDTTIPRRL 80
          R   D+   +         +W   I+          +   +  IPG+++  +   L
Sbjct: 1  RKISDEECPVRKSMQIFAGKWTLLIIF-QINRRIIRYGELKRAIPGISEKMLIDEL 55


>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 176

 Score = 24.2 bits (51), Expect = 6.8
 Identities = 10/63 (15%), Positives = 19/63 (30%)

Query: 18 IADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQGEIPGLTDTTIP 77
          + D  K   FY + +GM +         K  +  ++  +       K  +I         
Sbjct: 31 VKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKAT 90

Query: 78 RRL 80
            L
Sbjct: 91 LEL 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 539,249
Number of extensions: 24673
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 8
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.6 bits)