BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17955
         (547 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal
           Signalling Domain
          Length = 187

 Score = 31.2 bits (69), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 333 ALELKQQPKSLKIRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 377
           A+ +  Q   +K+R+ E  + + HH +E LHYE   ++I  + + +NK
Sbjct: 100 AISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 147


>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
           Hedgehog N-Terminal Signalling Domain
          Length = 187

 Score = 31.2 bits (69), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 333 ALELKQQPKSLKIRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 377
           A+ +  Q   +K+R+ E  + + HH +E LHYE   ++I  + + +NK
Sbjct: 100 AISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 147


>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian
           Hedgehog N- Terminal Signalling Domain
          Length = 187

 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 333 ALELKQQPKSLKIRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 377
           A+ +  Q   +K+R+ E  + + HH +E LHYE   ++I  + + +NK
Sbjct: 100 AISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 147


>pdb|2WFX|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
           Interacting Protein Hip And Sonic Hedgehog In The
           Presence Of Calcium
          Length = 152

 Score = 30.4 bits (67), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 333 ALELKQQPKSLKIRLDESQEVECHHLKERLHYE 365
           A+ +  Q   +K+R+ E  + + HH +E LHYE
Sbjct: 72  AISVMNQWPGVKLRVTEGWDEDGHHSEESLHYE 104


>pdb|1VHH|A Chain A, A Potential Catalytic Site Within The Amino-Terminal
           Signalling Domain Of Sonic Hedgehog
          Length = 162

 Score = 30.0 bits (66), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 333 ALELKQQPKSLKIRLDESQEVECHHLKERLHYE 365
           A+ +  Q   +K+R+ E  + + HH +E LHYE
Sbjct: 78  AISVMNQWPGVKLRVTEGWDEDGHHSEESLHYE 110


>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian
           Hedgehog N- Terminal Signalling Domain
          Length = 187

 Score = 29.6 bits (65), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 333 ALELKQQPKSLKIRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 377
           A+ +  Q   +K+R+ +  + + HH +E LHYE   ++I  + + +NK
Sbjct: 100 AISVMNQWPGVKLRVTKGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 147


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.125    0.334 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,235,107
Number of Sequences: 62578
Number of extensions: 304192
Number of successful extensions: 920
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 53
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)