Query psy17955
Match_columns 547
No_of_seqs 98 out of 121
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 18:39:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jad_A PLC-beta, phospholipase 91.6 12 0.00041 37.4 22.6 62 155-216 75-137 (251)
2 2i9o_A MHB8A peptide; beta-hai 65.9 2.2 7.4E-05 30.3 1.2 14 26-39 15-28 (37)
3 4dpv_Z Protein (parvovirus coa 52.6 3.1 0.00011 45.3 0.2 18 15-32 20-37 (584)
4 2i7u_A Four-alpha-helix bundle 45.0 6.9 0.00023 30.4 1.0 6 27-32 30-35 (62)
5 3uv4_A Second bromodomain of h 44.7 5.5 0.00019 36.6 0.5 37 10-46 2-39 (158)
6 1yx4_A 26S proteasome non-ATPa 43.1 25 0.00086 32.0 4.5 15 16-30 14-28 (132)
7 3u85_B Histone-lysine N-methyl 38.2 11 0.00038 24.1 1.0 9 20-28 10-18 (21)
8 3p8c_D Wiskott-aldrich syndrom 38.0 6.3 0.00022 39.9 -0.2 16 17-32 187-202 (279)
9 3n44_F E1 envelope glycoprotei 33.0 8.7 0.0003 40.7 -0.1 15 19-33 5-19 (473)
10 1f5n_A Interferon-induced guan 31.8 3.9E+02 0.013 29.4 12.6 86 353-478 490-575 (592)
11 3nwm_A Peptide/beta-2microglob 28.1 14 0.00046 39.3 0.3 14 18-31 126-139 (443)
12 3aug_A BPTI, bovine pancreatic 21.9 27 0.00091 27.5 0.9 15 28-42 36-50 (65)
13 3aub_A BPTI, bovine pancreatic 21.7 27 0.00094 26.7 0.9 15 28-42 36-50 (58)
14 1aap_A Alzheimer'S disease amy 20.3 30 0.001 26.3 0.9 15 28-42 36-50 (58)
No 1
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=91.60 E-value=12 Score=37.38 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=51.9
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHhHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHhhc
Q psy17955 155 ELEKLTLKHTSELEKKAKLNTSCEKKLTKEIIARQDCDRKV-FEAAKKKEYKASKERWKRELS 216 (547)
Q Consensus 155 elEkL~~qHq~ElEkq~k~~~~~ErkL~Kki~~qqkQelK~-fk~~qkkeyK~~Ke~~K~El~ 216 (547)
.+..|..+|..+|-.........|.++.+.|..++-.-|+. ..+.+....|.+++.+..+..
T Consensus 75 kv~el~~~q~~el~~l~~~q~~eE~~~k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~K 137 (251)
T 1jad_A 75 QVVELKERLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIK 137 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888999999999888999999999999999887777 567888888899888886654
No 2
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=65.94 E-value=2.2 Score=30.28 Aligned_cols=14 Identities=57% Similarity=1.211 Sum_probs=8.0
Q ss_pred CCCCCCCcccchhh
Q psy17955 26 GGGGGGGAPNNFAT 39 (547)
Q Consensus 26 ~~~~~~~~~~~Fat 39 (547)
||||||++...|++
T Consensus 15 ggggggsaaeayak 28 (37)
T 2i9o_A 15 GGGGGGSAAEAYAK 28 (37)
T ss_dssp CCCCSCSSHHHHHH
T ss_pred CCCCcchHHHHHHH
Confidence 45555566566654
No 3
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=52.61 E-value=3.1 Score=45.30 Aligned_cols=18 Identities=56% Similarity=1.142 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCCCCCCCC
Q psy17955 15 HSGAGGGSNNVGGGGGGG 32 (547)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (547)
-.++|||+.++|||||||
T Consensus 20 ~~~~g~G~~g~gg~G~gG 37 (584)
T 4dpv_Z 20 ATGSGNGSGGGGGGGSGG 37 (584)
T ss_dssp --CCCCCCCCCCEETTEE
T ss_pred hhccCCCCCCCCCCCCCC
Confidence 344455555555544443
No 4
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=45.02 E-value=6.9 Score=30.42 Aligned_cols=6 Identities=100% Similarity=2.195 Sum_probs=2.5
Q ss_pred CCCCCC
Q psy17955 27 GGGGGG 32 (547)
Q Consensus 27 ~~~~~~ 32 (547)
||||||
T Consensus 30 gggggg 35 (62)
T 2i7u_A 30 GGGGGG 35 (62)
T ss_dssp SCSSSC
T ss_pred CCCchH
Confidence 344444
No 5
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=44.72 E-value=5.5 Score=36.63 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=10.1
Q ss_pred ccCCCCCCCCCC-CCCCCCCCCCCcccchhhHHhhhhh
Q psy17955 10 HQGAHHSGAGGG-SNNVGGGGGGGAPNNFATIRTTSIV 46 (547)
Q Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~Fate~~~l~~ 46 (547)
|.|.||||.|.| ++|...-|-......|+.++...+.
T Consensus 2 ~~~~~~~~~~~~~~~n~~~~~~~d~~~~l~~iL~~i~~ 39 (158)
T 3uv4_A 2 HHHHHHSSGVDLGTENLYFQSMDDDQVAFSFILDNIVT 39 (158)
T ss_dssp --------------------CCSHHHHHHHHHHHHHHH
T ss_pred CCCCcccccccCCCCCCccccCCchHHHHHHHHHHHHH
Confidence 567777776533 3343333433445667777666554
No 6
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=43.11 E-value=25 Score=32.00 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=4.0
Q ss_pred CCCCCCCCCCCCCCC
Q psy17955 16 SGAGGGSNNVGGGGG 30 (547)
Q Consensus 16 ~~~~~~~~~~~~~~~ 30 (547)
||-|+|+++.|+|||
T Consensus 14 ~~~~eG~g~~~~~~~ 28 (132)
T 1yx4_A 14 SGHIEGRHMLGLGAS 28 (132)
T ss_dssp -------CCSCCCSS
T ss_pred cCCCCCccccccCcc
Confidence 566666555555444
No 7
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=38.17 E-value=11 Score=24.06 Aligned_cols=9 Identities=44% Similarity=0.900 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q psy17955 20 GGSNNVGGG 28 (547)
Q Consensus 20 ~~~~~~~~~ 28 (547)
|||.|.|||
T Consensus 10 g~s~~sg~g 18 (21)
T 3u85_B 10 GTTGGGGGG 18 (26)
T ss_pred CcccCCCcc
Confidence 444443333
No 8
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=37.96 E-value=6.3 Score=39.89 Aligned_cols=16 Identities=56% Similarity=1.176 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q psy17955 17 GAGGGSNNVGGGGGGG 32 (547)
Q Consensus 17 ~~~~~~~~~~~~~~~~ 32 (547)
|.|||+++.||.||.+
T Consensus 187 ~~~~~~~~~~~~~~~~ 202 (279)
T 3p8c_D 187 GGSGGSGGSGGSGGSG 202 (279)
T ss_dssp ----------------
T ss_pred CCCCCCCCCCCCCCCC
Confidence 4445444444444433
No 9
>3n44_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG; 2.35A {Chikungunya virus} PDB: 3n41_F* 3n42_F* 3n43_F* 2xfc_A
Probab=33.04 E-value=8.7 Score=40.66 Aligned_cols=15 Identities=60% Similarity=1.194 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCc
Q psy17955 19 GGGSNNVGGGGGGGA 33 (547)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (547)
||||+++|.||||..
T Consensus 5 ~~~~~~~~~~~~~~~ 19 (473)
T 3n44_F 5 GGGSGGGGSGGGGSG 19 (473)
T ss_dssp ---------------
T ss_pred CCCCCCCCCCCCCCc
Confidence 444444444444443
No 10
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=31.76 E-value=3.9e+02 Score=29.36 Aligned_cols=86 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhh
Q psy17955 353 VECHHLKERLHYELEILMAYQSKNKMQAEAQQLEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQERELESFDQE 432 (547)
Q Consensus 353 ~E~~~L~~~l~~Elell~~~Qsk~q~~~E~q~LeeRVsvRRAlLEqKmeeE~~~l~~ER~erir~L~eRq~rEle~Fd~E 432 (547)
.+.++=++-.++|-++|...|.+.+..+|.|+ ..---+-+-|..||++|...+..|
T Consensus 490 ~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~--~~~~e~~~ql~~kme~~~~~~~~e---------------------- 545 (592)
T 1f5n_A 490 EVERVKAESAQASAKMLHEMQRKNEQMMEQKE--RSYQEHLKQLTEKMENDRVQLLKE---------------------- 545 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q ss_pred hhcccchhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17955 433 SNRMGFRYRQILVSSQSRVELEDRVSVRRALLEQKMDMETQQFLGE 478 (547)
Q Consensus 433 s~r~gf~~~q~~~ss~e~~~le~rvs~rra~le~k~~~e~~~~~~e 478 (547)
-..-|+.|.-..-++|..-...+...++++
T Consensus 546 ----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e 575 (592)
T 1f5n_A 546 ----------------QERTLALKLQEQEQLLKEGFQKESRIMKNE 575 (592)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 11
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein; peptide-MHC complex, immunoglobulin fold system; 2.70A {Synthetic}
Probab=28.10 E-value=14 Score=39.27 Aligned_cols=14 Identities=64% Similarity=1.270 Sum_probs=1.0
Q ss_pred CCCCCCCCCCCCCC
Q psy17955 18 AGGGSNNVGGGGGG 31 (547)
Q Consensus 18 ~~~~~~~~~~~~~~ 31 (547)
+|||+..+||||||
T Consensus 126 ~~~~~~~~~~~~~~ 139 (443)
T 3nwm_A 126 GGGGSGGGGSGGGG 139 (443)
T ss_dssp CC------------
T ss_pred ccccccccccCCCc
Confidence 45555544444443
No 12
>3aug_A BPTI, bovine pancreatic trypsin inhibitor; serine protease inhibitor, inhibits serine protease, trypsin hydrolase inhibitor; 1.40A {Bos taurus} PDB: 3aue_A 3auc_A 3aud_A 1f7z_I 1f5r_I 3tgi_I 3tgj_I 3tgk_I
Probab=21.88 E-value=27 Score=27.46 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=10.4
Q ss_pred CCCCCcccchhhHHh
Q psy17955 28 GGGGGAPNNFATIRT 42 (547)
Q Consensus 28 ~~~~~~~~~Fate~~ 42 (547)
||-|||.|+|.|.-+
T Consensus 36 gGC~GN~NnF~t~~e 50 (65)
T 3aug_A 36 GGVRAKRNNFASAAD 50 (65)
T ss_dssp CSSSCCSSCBSSHHH
T ss_pred CCcCCCccCcCCHHH
Confidence 344556799998754
No 13
>3aub_A BPTI, bovine pancreatic trypsin inhibitor; serine protease inhibitor, hydrolase inhibitor; 1.00A {Bos taurus} PDB: 3aui_A 3auh_A 3ci7_A
Probab=21.65 E-value=27 Score=26.69 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=10.3
Q ss_pred CCCCCcccchhhHHh
Q psy17955 28 GGGGGAPNNFATIRT 42 (547)
Q Consensus 28 ~~~~~~~~~Fate~~ 42 (547)
||-|||.|+|.|.-+
T Consensus 36 gGC~gN~NnF~t~~~ 50 (58)
T 3aub_A 36 GGVRAKRNNFASAAD 50 (58)
T ss_dssp CSSSCCSSCBSSHHH
T ss_pred CCcCCCCcCcCCHHH
Confidence 344556799998754
No 14
>1aap_A Alzheimer'S disease amyloid A4 protein; proteinase inhibitor (trypsin); 1.50A {Homo sapiens} SCOP: g.8.1.1 PDB: 1taw_B 1brc_I 1zjd_B 3l3t_E 1ca0_D 3l33_E
Probab=20.35 E-value=30 Score=26.33 Aligned_cols=15 Identities=53% Similarity=0.796 Sum_probs=10.3
Q ss_pred CCCCCcccchhhHHh
Q psy17955 28 GGGGGAPNNFATIRT 42 (547)
Q Consensus 28 ~~~~~~~~~Fate~~ 42 (547)
||-|||.|+|.|..+
T Consensus 36 gGC~gN~N~F~t~~~ 50 (58)
T 1aap_A 36 GGCGGNRNNFDTEEY 50 (58)
T ss_dssp CSSSCCSCCBSSHHH
T ss_pred CCcCCCCCCcCCHHH
Confidence 344557799998764
Done!