RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17955
(547 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 4e-11
Identities = 57/472 (12%), Positives = 136/472 (28%), Gaps = 119/472 (25%)
Query: 134 MDQHKSLLDKEYETLLQQFSRELEK-LTLKHTSELEKKAKLNTSCEKKLTKEIIARQDCD 192
MD +Y+ +L F K ++ K + II +D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-----HIIMSKDAV 61
Query: 193 ---RKVFEAAKKKEYKASKERWKRELSQD-----ERRRAAGPSESIASSLTQGATEASRG 244
++F K+ + ++ + L + + E S+ R
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT----EQRQPSMMTRMYIEQRD 117
Query: 245 RP-DEARLCADRKIIRQRAGKELNKRQQQLEQA-----HSML-----------LRHHEKT 287
R ++ ++ A + R + +L + +L A +L ++
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 288 QELEY-------RQQKSVHSLREDQVTRQHQTE--LTNQEDYMHRSEQEL-----KKKHA 333
++++ + S ++ E +Q + T++ D+ + + + +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 334 LELKQQPKSLKIRLDESQEVECHHLKERLHYELE--ILMAYQSKNKMQAEAQQLEDRVSV 391
L+ K L + L Q + + L IL+ + K + +S+
Sbjct: 238 LKSKPYENCLLV-LLNVQNAK--AWN---AFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 392 R-----------RALLEQKMDMETQQ--------------FLGE--RQERIR------LL 418
++LL + +D Q + E R +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 419 HERQERELESF--DQESNRMGFRYR----------------QILVSSQSRVELEDRVS-- 458
++ +ES E + ++ + ++ V+
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 459 VRRALLEQKMDMET------QQFLGERQERIRLLHER---QERELESFDQES 501
+ +L+E++ T L + E LH ++FD +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Score = 62.2 bits (150), Expect = 3e-10
Identities = 70/479 (14%), Positives = 142/479 (29%), Gaps = 116/479 (24%)
Query: 42 TTSIVTKQQKEH-MQAKLNTSCEKKLTKEIIARQDCDRKVF-EAAKKKEYKASKERWKRE 99
SI++K++ +H + +K S +L ++++Q+ + F E + YK K E
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 100 LSQEEMHEQMSGYKRMR--------------REH-----QAALLKLEEKCKIEMDQH--- 137
Q M +M +R R R + ALL+L + +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI--DGVL 159
Query: 138 ---KSLL-------------------------DKEYETLLQQFSRELEKLTLKHTSELE- 168
K+ + ET+L+ + L ++ TS +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 169 -KKAKLNTSCEKKLTKEIIARQD-----------CDRKVFEA-----------AKKKEYK 205
KL + + ++ + + K + A K+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 206 ASKERWKRELSQDERRRAAGPSES---IASSLTQGAT----EASRGRPDEARLCADRKII 258
+S D P E + L E P + A+ I
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES--I 337
Query: 259 RQRAGKELNKRQQQLEQAHSMLLRHHEKTQELEYRQQ-KSVHSLRED-QVTRQ------H 310
R N + ++ +++ + EYR+ + +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 311 QTELTNQEDYMHRSEQELKKKHALELKQQPKSLKIRL-DESQEVECHHLKER-LHYELEI 368
++ + +L K +E +QPK I + E++ E LH I
Sbjct: 398 DVIKSDVMVVV----NKLHKYSLVE--KQPKESTISIPSIYLELKVKLENEYALHR--SI 449
Query: 369 LMAYQSKNKMQAE--AQQLEDRVS-------VRRALLEQKMDMETQQFLGER--QERIR 416
+ Y ++ D+ ++ ++M + FL R +++IR
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Score = 61.0 bits (147), Expect = 6e-10
Identities = 66/458 (14%), Positives = 132/458 (28%), Gaps = 137/458 (29%)
Query: 104 EMHEQMSGYKRMRREHQAALLKLEEKCKIEMDQHKSLL-DKEYETLLQQFSRELEKLTLK 162
E E YK + + A + CK D KS+L +E + ++ L L
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL- 67
Query: 163 HTSELEKKAKLNTSCEKKLTKEIIARQDCDRKVFEAAKKKEYKASKERWKRELSQDERRR 222
T K+ +E++ + E + YK K E Q
Sbjct: 68 ----------FWTLLSKQ--EEMVQK------FVEEVLRINYKFLMSPIKTEQRQ----- 104
Query: 223 AAGPSESIASSLTQGATEASRGRP-DEARLCADRKIIRQRAGKELNKRQQQLEQA----- 276
PS + Q R R ++ ++ A + R + +L + +L A
Sbjct: 105 ---PSMMTRMYIEQ------RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 277 HSML-----------LRHHEKTQELEY-------RQQKSVHSLREDQVTRQHQTE--LTN 316
+L ++ ++++ + S ++ E +Q + T+
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 317 QEDYMHRSEQEL-----KKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELE--IL 369
+ D+ + + + + L+ K L + L Q + + L IL
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAK--AWN---AFNLSCKIL 269
Query: 370 MAYQSKNKMQAEAQQLEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQ---EREL 426
+ ++ K Q+ D +S I L H E+
Sbjct: 270 LT--TRFK------QVTDFLS------------------AATTTHISLDHHSMTLTPDEV 303
Query: 427 ESFDQESNRMGFRYRQILVSSQSRVELED-----------RVSVRRALLEQKMDM--ETQ 473
+S L+ +D R+S+ + + +
Sbjct: 304 KS---------------LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 474 QFLGERQERIRLLHERQERELESFDQESNRMGFSALAI 511
++ I E L + R F L++
Sbjct: 349 HVNCDKLTTII------ESSLNVLEPAEYRKMFDRLSV 380
Score = 36.8 bits (84), Expect = 0.022
Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 19/123 (15%)
Query: 430 DQESNRMGFRYRQILVSSQSRV-------ELEDRVSVRRALLEQKMDMETQQFLGERQER 482
D E+ ++Y+ IL + +++D + L ++++D +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSKEEIDHIIMS--KDAVSG 63
Query: 483 IR----LLHERQERELESFDQESNRMGFSALAIAEASKESYPDMDGSLSGSMLSLNHSNS 538
L +QE ++ F +E R+ + L S S+ M
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 539 CNS 541
N
Sbjct: 120 YND 122
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 52.5 bits (126), Expect = 3e-07
Identities = 50/325 (15%), Positives = 120/325 (36%), Gaps = 7/325 (2%)
Query: 78 RKVFEAAKKKEYKASKERWKRELSQEEMHEQMSGYKRMRREHQAALLKLEEKCKIEMDQH 137
+ + K+++ KA E + E ++ E+ + + + + EE +
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922
Query: 138 KSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLNTSCEKKLTKEIIARQDCDR-KVF 196
+ L + +E + E E+ + + +E +K + E++L +E ARQ KV
Sbjct: 923 QELEEILHEMEARI--EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980
Query: 197 EAAKKKEYKASKERWKRELSQDERRRAAGPSE--SIASSLTQGATEASRGRPDEARLCAD 254
K K+ + + + ++ + R + ++L + +A + + +
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 255 RKIIRQRAGKELNKRQQQLEQAHSMLLRHHEKTQELEYRQQKSVHSLREDQVTRQHQTEL 314
+ R K+ K +Q+LE+ L E Q + L+ ++ + +
Sbjct: 1041 ISELEVRL-KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099
Query: 315 TNQEDYMHRSEQELKKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELEI-LMAYQ 373
S++ K EL+ L+ L+ + K++ E+ + +
Sbjct: 1100 ALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159
Query: 374 SKNKMQAEAQQLEDRVSVRRALLEQ 398
++ + A Q E R S + ++
Sbjct: 1160 LEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 50.2 bits (120), Expect = 2e-06
Identities = 48/313 (15%), Positives = 112/313 (35%), Gaps = 23/313 (7%)
Query: 198 AAKKKEYKASKERWKRELSQDERRRAAGPSESIASSLTQGATEASRGRPDEARLCADR-- 255
AK +E + +KER ++ ++ + +L Q +A EA R
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919
Query: 256 --KIIRQRAGKELNKRQQQLEQAHSMLLRHHEKTQELEYRQQKSVHSLREDQVTRQHQ-T 312
K + E+ R ++ E+ L +K Q+ ++ + + Q +
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 313 ELTNQEDYMHRSEQELKKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELEILMAY 372
+ M ++ ++ +L ++ K L+ R+ + +E L
Sbjct: 980 TADGKIKKMEDDILIMEDQNN-KLTKERKLLEERVSDLTTN--LAEEEEKAKNLT----- 1031
Query: 373 QSKNKMQAEAQQLEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHER---QERELESF 429
+ KNK ++ +LE R+ E+K E ++ + + LHE+ + ++
Sbjct: 1032 KLKNKHESMISELEVRLKK-----EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086
Query: 430 DQESNRMGFRYRQILVSSQSRVELEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHER 489
+ + + L + ++ + LE + + E+ R + ++
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146
Query: 490 QE--RELESFDQE 500
++ ELE+ E
Sbjct: 1147 RDLSEELEALKTE 1159
Score = 42.1 bits (99), Expect = 4e-04
Identities = 45/300 (15%), Positives = 107/300 (35%), Gaps = 22/300 (7%)
Query: 49 QQKEHMQAKLNTSCEKKLTKEIIARQDCDRKVFEAAKKKEYKASKERWKRELSQEEMHEQ 108
Q+K + +L E+ + +Q+ + + E + E + + + + +++M +Q
Sbjct: 898 QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE-EEEERSQQLQAEKKKMQQQ 956
Query: 109 MSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLD--KEYETLLQQFSRELEKLTLKHTSE 166
M + E +AA KL+ + + K + D E + ++E + L + S+
Sbjct: 957 MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV-SD 1015
Query: 167 LEKKAKLNTSCEKKLTKEIIA-RQDCDRKVFEAAKKKEYKASKERWKRELSQDERRRAAG 225
L K LTK K+++ + E+ KR+L + E
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL-EGESSDLHE 1074
Query: 226 PSESIASSLTQGATEASRGRPDEARLCAD------RKIIRQRAGKELNKRQQQLEQAHSM 279
+ + + + + ++ + A +K + +EL L++
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134
Query: 280 LLRHHEKTQELEYRQQKSVHSLREDQVTRQHQTELTNQEDYMHRSEQELKKKHALELKQQ 339
K ++ + + + +L+ EL + D +QEL+ + +
Sbjct: 1135 EKAARNKAEKQKRDLSEELEALKT---------ELEDTLDTTAT-QQELRGSDYKDDDDK 1184
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 47.4 bits (113), Expect = 1e-05
Identities = 46/377 (12%), Positives = 117/377 (31%), Gaps = 55/377 (14%)
Query: 51 KEHMQAKLNTSCEKKLTKEIIARQDCDRKVFEAAKKKEYKASKERWKRELSQEEMHEQMS 110
+ A L KL I Q R +K+Y + H+
Sbjct: 752 RAGQVAYLEKIRADKLRAACIRIQKTIRGWLM---RKKYMRMRRAAITIQRYVRGHQARC 808
Query: 111 GYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKK 170
+RR A +++ ++ + +++ + ++ LQ R E K
Sbjct: 809 YATFLRRTRAAIIIQKFQRMYVVRKRYQCM--RDATIALQALLRGYLVRNKYQMMLREHK 866
Query: 171 AKLNTSCEKKLTKEIIARQDCDRKVFEAAKKKEYKASKERWKRELSQDERRRAAGPSESI 230
+ + +K + +AR R K + ++R +++ E ++
Sbjct: 867 SII----IQKHVRGWLARVHYHRT------LKAIVYLQCCYRRMMAKRELKKLK------ 910
Query: 231 ASSLTQGATEASRGRPDEARLCADRKIIRQRAGKELNKRQQQLEQAHSMLLRHHEKTQEL 290
EAR K + ++ + Q+++++ + EK L
Sbjct: 911 ----------------IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954
Query: 291 EYRQQKSVHSLREDQVTRQHQTELTNQEDYMHRSEQELKKKHALELKQQPKSLKIRLDES 350
E LR D + ++ A + SL+ + +
Sbjct: 955 EITYSTETEKLRSDV------------------ERLRMSEEEAKNATNRVLSLQEEIAKL 996
Query: 351 QEVECHHLKERLHYELEILMAYQSKNKMQAEAQQLEDRVSVRRALLEQKMDMETQQFLGE 410
++ E+ E ++ +E ++ + + L +++ + ++
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056
Query: 411 RQERIRLLHERQERELE 427
++++ ++ E +L
Sbjct: 1057 MEKKLVEETKQLELDLN 1073
Score = 45.5 bits (108), Expect = 4e-05
Identities = 30/244 (12%), Positives = 85/244 (34%), Gaps = 24/244 (9%)
Query: 255 RKIIRQRAGKELNKRQQQLEQAHSMLLRHHEKTQELEYRQQKSVHSLREDQVTRQHQTEL 314
++R + L + + + Q H +R R K++ L+ + EL
Sbjct: 851 GYLVRNKYQMMLREHKSIIIQKH---VRGWLARVHYH-RTLKAIVYLQCCYRRMMAKREL 906
Query: 315 TNQEDYMHRSEQELKKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELEILMAYQS 374
+ E+ K LE + L+ ++DE + L++ + E+ +
Sbjct: 907 KKLKIEARSVERYKKLHIGLE--NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964
Query: 375 KNKMQAEAQQLED---RVSVRRALLEQKMDMETQQFLGERQERIRLLHERQERELESFDQ 431
+ E+ + R L++++ ++ L + Q + + E ++ +Q
Sbjct: 965 LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE-LHQTQTEKKTIEEWADKYKHETEQ 1023
Query: 432 ESNRMGFRYRQILVSSQSRVELEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQE 491
+ + E + + L +++ + ++ ++++ ++ E
Sbjct: 1024 LVSELK--------------EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069
Query: 492 RELE 495
+L
Sbjct: 1070 LDLN 1073
Score = 42.4 bits (100), Expect = 3e-04
Identities = 30/247 (12%), Positives = 84/247 (34%), Gaps = 19/247 (7%)
Query: 267 NKRQQQLEQAHSMLLRHHEKTQELEYRQQKSVHSLREDQVTRQHQTELTNQEDYMHRSEQ 326
+R + + + + Q L R + + + + ++ R
Sbjct: 825 FQRMYVVRKRYQCMRDATIALQALL-RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY 883
Query: 327 ELKKKHALELKQQPKSLKIRLD----ESQEVECHHLKERLHYELEILMAYQSKNKMQAEA 382
K + L+ + + + + + + K+ LH LE NK+
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKK-LHIGLE--------NKIMQLQ 934
Query: 383 QQLEDRVSVRRALLEQKMDMETQ-----QFLGERQERIRLLHERQERELESFDQESNRMG 437
++++++ ++LLE+ ++E + L ER+R+ E + +
Sbjct: 935 RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994
Query: 438 FRYRQILVSSQSRVELEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQERELESF 497
+++ + + +E+ + EQ + +Q + E+ L ++ E
Sbjct: 995 KLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054
Query: 498 DQESNRM 504
+ ++
Sbjct: 1055 ETMEKKL 1061
Score = 38.9 bits (91), Expect = 0.005
Identities = 28/264 (10%), Positives = 79/264 (29%), Gaps = 61/264 (23%)
Query: 48 KQQKEHMQAKLNTSCEKKLTKEIIARQDCDRKVFEAAKKKEYKASKERWKRELSQEEMHE 107
+ + + + + ++A+++ + EA + YK + ++ ++
Sbjct: 878 LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI--MQLQR 935
Query: 108 QMSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSEL 167
++ + + + LE E ++ +S +++ L+ E + T + S
Sbjct: 936 KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER-----LRMSEEEAKNATNRVLSLQ 990
Query: 168 EKKAKLNTSCEKKLTKEIIARQDCDRKVFEAAKKKEYKASKERWKRELSQDERRRAAGPS 227
E+ AKL + +KK + +++K E Q
Sbjct: 991 EEIAKLRKELHQ-----------------TQTEKKTIEEWADKYKHETEQLVSEL----- 1028
Query: 228 ESIASSLTQGATEASRGRPDEARLCADRKIIRQRAGKELNKRQQQLEQAHSMLLRHHEKT 287
+ L +++L + + +T
Sbjct: 1029 --------------------------------KEQNTLLKTEKEELNRRIHDQAKEITET 1056
Query: 288 QELEYRQQKSVHSLREDQVTRQHQ 311
E + ++ L + ++Q
Sbjct: 1057 MEKKLVEETKQLELDLNDERLRYQ 1080
Score = 35.9 bits (83), Expect = 0.035
Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 5/148 (3%)
Query: 45 IVTKQQKEHMQAKLNTSCEKKLTKEIIARQDCDRKV---FEAAKKKEYKASKERWKRELS 101
I+ Q+K Q K S +K+ I K+ E + E +A +
Sbjct: 930 IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989
Query: 102 QEEMHEQMSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTL 161
QEE+ + + + E + + + +K K E +Q S L ++ TLL+ EL +
Sbjct: 990 QEEIAKLRKELHQTQTEKKT-IEEWADKYKHETEQLVSELKEQ-NTLLKTEKEELNRRIH 1047
Query: 162 KHTSELEKKAKLNTSCEKKLTKEIIARQ 189
E+ + + E K + + +
Sbjct: 1048 DQAKEITETMEKKLVEETKQLELDLNDE 1075
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 5e-05
Identities = 54/392 (13%), Positives = 109/392 (27%), Gaps = 142/392 (36%)
Query: 56 AKLNTSCEKKLTK--EII-----ARQDCDRKV--------FEAAKKKEYKA--------S 92
AKL + L K E+I AR R F A + + +
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 93 KERWKRELSQEEMHEQMSGYKRMRRE--HQAALLKLEEKCKIEMDQHK---------SLL 141
+ + EL ++++ Y + + +A L E + +D K L
Sbjct: 166 TDDYFEELR--DLYQT---YHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQGLNILEWL 219
Query: 142 -------DKEYE----------TLLQ--QFSRELEKLTLKHTSELEKKAKLNTSCEKKLT 182
DK+Y ++Q + + L EL K T + L
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF-TPGELRSYLKGATGHSQGL- 277
Query: 183 KEIIARQDCDRKVFEAAKKKE--YKASKE--RW-----KRELSQDERRRAAGPSESIASS 233
+ A E + + ++ R + A P+ S+ S
Sbjct: 278 --VTAV------AIAETDSWESFFVSVRKAITVLFFIGVR--CYE-----AYPNTSLPPS 322
Query: 234 LTQGATEASRGRP-------DEARLCADRKIIRQRAGKELNKRQQQLEQAH--------- 277
+ + + E + G P + + + + N +Q
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYV------NKTNSHLPAGKQVEISLVNGAKN 376
Query: 278 -------------SMLLRHHEKTQELEYRQQKSVHSLREDQVTRQ--------HQTELTN 316
++ LR + L+ Q + S R+ + + + H
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLD--QSRIPFSERKLKFSNRFLPVASPFH------ 428
Query: 317 QEDYMHRSEQELKK---KHALELKQQPKSLKI 345
+ + + K K+ + K ++I
Sbjct: 429 -SHLLVPASDLINKDLVKNNVSFN--AKDIQI 457
Score = 40.8 bits (95), Expect = 0.001
Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 95/235 (40%)
Query: 373 QSKNKMQAEAQQLEDRVSVRRALLEQKMDMETQQ--------------------FLGERQ 412
Q + M L + + + D + F GE+
Sbjct: 1627 QEQG-M---GMDLYKTSKAAQDVWNR-ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 413 ERIR-----LLHE-------RQERELESFDQESNRMGFR----------YRQ--ILVSSQ 448
+RIR ++ E + E+ + ++ S FR + Q + +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME- 1740
Query: 449 SRVELEDRVSVRRALLEQKMDMETQQF----LGE------------RQERIRLLHERQER 492
+ L + + F LGE + + ++ R
Sbjct: 1741 --------KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR--- 1789
Query: 493 ELESFDQESNRMGFSALAIAEASKESYPDMDGSLSGSMLSLNHSNSCNSFPEGSL 547
G + + A D G + M+++N SF + +L
Sbjct: 1790 ------------G---MTMQVAVPR---DELGRSNYGMIAINPGRVAASFSQEAL 1826
Score = 36.6 bits (84), Expect = 0.023
Identities = 77/510 (15%), Positives = 148/510 (29%), Gaps = 186/510 (36%)
Query: 145 YETLLQQFSRELEKLTLKHTSELEKKAKLNTSCEKKLTKEIIAR--QDCDRKVFEAAKKK 202
L +QF++ L + T ++ E E++ + V E +K
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDEPTTPA----------ELVGKFLGYVSSLV-EPSKVG 78
Query: 203 EYKASKERWKRELSQDERRRAAGPSE--SIASSLTQGATEASRGRPDEARLCADRKIIR- 259
++ + L++ E G ++ ++A+ L Q ++ L +++I+
Sbjct: 79 QF---DQVLNLCLTEFENCYLEG-NDIHALAAKLLQ---------ENDTTLVKTKELIKN 125
Query: 260 -----QRAGKELNKRQQQLEQAHSMLLRHHEKTQELEYRQ---QKSVHS----LREDQVT 307
A + +K+ S L R + Q + LR+
Sbjct: 126 YITARIMAKRPFDKKSN------SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD---- 175
Query: 308 RQHQTELTNQEDYMHRSEQELKK------------KHALELKQ-------QPK------- 341
+QT D + S + L + L + + P
Sbjct: 176 -LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 342 --SLK-IRLDESQ----EVECH-------HLKERL-----HYELEILMA----------- 371
S I + Q V L+ L H + ++ A
Sbjct: 235 PISCPLIGV--IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ-GLVTAVAIAETDSWES 291
Query: 372 -YQSKNKMQ-------AEAQQLEDRVSVRRALLEQKMD--------METQQFLGERQERI 415
+ S K + S+ ++LE ++ M L I
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM-----LS-----I 341
Query: 416 RLLHERQERELESFDQESNRMGFRYRQI---LV-SSQSRV------ELEDRVSVRRALLE 465
L + Q ++ + ++N +Q+ LV +++ V L + L +
Sbjct: 342 SNLTQEQ---VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY---GLNLTLRK 395
Query: 466 QKMDMETQQ----FLGERQERI--RLL------H--------ERQERELESFDQESNRMG 505
K Q F ER+ + R L H + ++L + N
Sbjct: 396 AKAPSGLDQSRIPF-SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA-- 452
Query: 506 FSALAIAEASKESYPDMDGS----LSGSML 531
+ I Y DGS LSGS+
Sbjct: 453 -KDIQIP-----VYDTFDGSDLRVLSGSIS 476
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 37.2 bits (85), Expect = 0.014
Identities = 34/227 (14%), Positives = 76/227 (33%), Gaps = 15/227 (6%)
Query: 258 IRQRAGKELNKRQQQLEQAHSMLLRHHEKTQELEYRQQKSVHSLREDQVTRQHQTELTNQ 317
++Q K L + Q + + M +R + + +Q + T + L+
Sbjct: 7 LQQLDSKFLEQVHQLYDDSFPMEIRQY--LAQWLEKQDWEHAANDVSFATIRFHDLLSQL 64
Query: 318 EDYMHRSEQELKKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELEILMAYQSKNK 377
+D R E +++ ++L+ E + L E +IL Q N+
Sbjct: 65 DDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQRFNQ 124
Query: 378 MQAEAQQLEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQERELESFDQESNRMG 437
Q+ Q + ++ Q+ L + ++ E E++S + +
Sbjct: 125 AQSGNIQ-------------STVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYD 171
Query: 438 FRYRQILVSSQSRVELEDRVSVRRALLEQKMDMETQQFLGERQERIR 484
F+ + + + + LL +KM + E +I
Sbjct: 172 FKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKII 218
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 37.3 bits (87), Expect = 0.016
Identities = 20/183 (10%), Positives = 52/183 (28%), Gaps = 5/183 (2%)
Query: 35 NNFATIRTTSIVTKQQKEHMQAKLNTSCEKKLTKEIIARQDCDRKVFEAAKKKEYKASKE 94
V++ + + + T + +A ++ KA +E
Sbjct: 804 KKTEKPPKGQEVSELEAIYNSLQ--TKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQE 861
Query: 95 RWKRELSQEEMHEQMSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSR 154
+ ++ + +++ L KLE + S + T +Q +
Sbjct: 862 HAEA---LRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLK 918
Query: 155 ELEKLTLKHTSELEKKAKLNTSCEKKLTKEIIARQDCDRKVFEAAKKKEYKASKERWKRE 214
LE + S + S +LT+ + + +++ K +
Sbjct: 919 NLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETY 978
Query: 215 LSQ 217
+
Sbjct: 979 KNT 981
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.095
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 8/26 (30%)
Query: 325 EQELKKKHALELKQQPKSLKIRLDES 350
+Q LKK L+ SLK+ D+S
Sbjct: 19 KQALKK---LQ-----ASLKLYADDS 36
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.10
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 413 ERIRLLHERQERELESFDQESNRMGFRYRQILVSSQSRVELEDRVSVRRALLEQ---KMD 469
E IR E Q + L+ D S M +R+ +++ +LE+ + +E+
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWRE-----KAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 470 METQQFLGERQERI 483
+ + F + I
Sbjct: 140 IADKAFYQQPDADI 153
Score = 32.1 bits (72), Expect = 0.31
Identities = 10/76 (13%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 109 MSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELE 168
++ R+ +E ++ + K E+ + + + + + ++ ++LE+ + + ++E
Sbjct: 74 IAQADRLTQEPES-IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 169 KKAKLNTSCEKKLTKE 184
K N +K ++
Sbjct: 133 KNKINNRIADKAFYQQ 148
Score = 27.8 bits (61), Expect = 6.3
Identities = 7/70 (10%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 259 RQRAGKELNKRQQQLEQAHSMLLRHHEKTQELEYRQQKSVHSLREDQVTRQHQTELTNQE 318
R+ K L + + +K E ++ + +QV + +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR-------QSEQVEKNKINNRIADK 143
Query: 319 DYMHRSEQEL 328
+ + + ++
Sbjct: 144 AFYQQPDADI 153
Score = 27.8 bits (61), Expect = 6.4
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 68 KEIIARQDCDRKVFEAAKKKEYKASKERWKRELSQEEMHEQMSGYKRMRREHQAALLK 125
++ + D KV E +++ K E W + EQ+ K R A +
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQR-----QSEQVEKNKINNRIADKAFYQ 147
Score = 27.8 bits (61), Expect = 8.1
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 481 ERIRLLHERQERELESFDQESNRMGFSALAIAEASKESY 519
E IR E Q + L+ D S M A+ E +
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW 123
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 34.1 bits (77), Expect = 0.14
Identities = 32/334 (9%), Positives = 105/334 (31%), Gaps = 18/334 (5%)
Query: 81 FEAAKKKEYKASKERWKRELSQEEMHEQMSGYKRMRREHQAALLKLEEKCKIEMDQHKSL 140
+A KK + + E++ + ++ +K + D +L
Sbjct: 406 IKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGAL 465
Query: 141 LDKEYETLLQQFSRELEKLTLKHTSELEKKAKLNTSCEKKLTK--EIIARQDCDRKVFEA 198
++ L++ + LE + + ++ A N E + + +
Sbjct: 466 T-QKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLT 524
Query: 199 AKKKEYKASKERWKRELSQDERRRAAGPSESIASSLTQGATEASRGRPDEARLCADRKII 258
+++KA+ +E ++ + + P +
Sbjct: 525 TAHEQFKATLPDADKERQAILGI-----HNEVSKIVQTYHVNMAGTNPYTTITPQEINGK 579
Query: 259 RQRAGKELNKRQQQLEQAHSMLLRHHEKTQELEYRQQKSVHSLREDQVTRQHQTELTNQE 318
+ + + +R Q L + H+ ++ ++ + ++ + E +
Sbjct: 580 WEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQT-------KMEEIGRI 632
Query: 319 DYMHRSEQELKKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELEILMAYQSKNKM 378
E + H + ++ + K ++D+ + ++E L ++ + +
Sbjct: 633 SIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDH-QQIQEALIFDNKHTNYTM--EHI 689
Query: 379 QAEAQQLEDRVSVRRALLEQKMDMETQQFLGERQ 412
+ +QL ++ +E ++ + + + Q
Sbjct: 690 RVGWEQLLTTIARTINEVENQILTRDAKGISQEQ 723
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 33.5 bits (77), Expect = 0.21
Identities = 17/173 (9%), Positives = 50/173 (28%), Gaps = 3/173 (1%)
Query: 64 KKLTKEIIARQDCDRKVFEAAKKKEYKASKERWKRELSQEEMHEQMSGYKRMRREHQAAL 123
+ + + + ++ A + L + E + ++R+ + A+
Sbjct: 827 EAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAV 886
Query: 124 LKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLNTSCEKKLTK 183
L L++ +I K + + + LE S E +
Sbjct: 887 L-LQKYNRILKKLENWATTKSVYLGSNETGDSITAVQ-AKLKNLEAFDGECQSLEGQSNS 944
Query: 184 EIIARQDCDRKVFEAAKKKEYKASKERWKRELSQDERRRAAGPSESIASSLTQ 236
++++ E K+ + + + A ++ + L +
Sbjct: 945 DLLSILA-QLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELER 996
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 32.5 bits (73), Expect = 0.46
Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 3/161 (1%)
Query: 49 QQKEHMQAKLNTSCEKKLTKEIIARQDCDRKVFEAAKKKEYKASKERWKRELSQEEMHEQ 108
Q+ + ++ T+ ++ K R + + + +K ++ E+ ++EL + E
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELE---A 711
Query: 109 MSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELE 168
MS +A E +IE + + + L + ELE++ EL
Sbjct: 712 MSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELI 771
Query: 169 KKAKLNTSCEKKLTKEIIARQDCDRKVFEAAKKKEYKASKE 209
K + +++ EA +
Sbjct: 772 YARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAV 812
Score = 30.5 bits (68), Expect = 1.9
Identities = 21/171 (12%), Positives = 51/171 (29%), Gaps = 3/171 (1%)
Query: 323 RSEQELKKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELEILMAYQSKNKMQAEA 382
+S + + ++ L++ + SQE H +RL E + Q K+ ++
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQ---KILDQS 697
Query: 383 QQLEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQERELESFDQESNRMGFRYRQ 442
+ + R + T E + R E + ++ +
Sbjct: 698 EAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEA 757
Query: 443 ILVSSQSRVELEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQERE 493
L + E+E + + LE + ++ + +
Sbjct: 758 ELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIR 808
Score = 29.8 bits (66), Expect = 2.9
Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 7/149 (4%)
Query: 373 QSKNKMQAEAQQLEDRVSVRRALLEQKMDME-TQQFLGERQERIRLLHERQERELESFDQ 431
Q + QL ++ K + + +Q R ER ++ + E E +
Sbjct: 648 QRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKI---LDQSEAEKARK 704
Query: 432 ESNRMGFRYRQILVSSQSRVELEDRVSVRRALLEQKMD---METQQFLGERQERIRLLHE 488
E + + + ++ E E R R E + ++ Q E + + + +
Sbjct: 705 ELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKK 764
Query: 489 RQERELESFDQESNRMGFSALAIAEASKE 517
+E EL + A +A +
Sbjct: 765 VREMELIYARAQLELEVSKAQQLANVEAK 793
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 31.2 bits (70), Expect = 0.88
Identities = 20/172 (11%), Positives = 47/172 (27%), Gaps = 10/172 (5%)
Query: 266 LNKRQQQLEQAHSMLLRHHEKTQELEYRQQKSVHSLREDQVTRQHQ-----TELTNQEDY 320
L + +Q+ E + +EL Q+ + L
Sbjct: 163 LVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSS 222
Query: 321 MHRSEQELKKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELEILMAYQSKNKMQA 380
+ E + + + + E + + H L E H L +
Sbjct: 223 SGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHK 282
Query: 381 EAQQLEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQERELESFDQE 432
A + + + K+ ++ +Q + +R + + E+ F
Sbjct: 283 GAIEKVKES--DKLVATSKITLQDKQNMVKRVSIMS---YALQAEMNHFHSN 329
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 29.5 bits (66), Expect = 2.1
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 4/77 (5%)
Query: 103 EEMHEQMSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLK 162
+ E H + ++ K EM +KS+ + L+ E
Sbjct: 10 QHKQET----NETLNHHNCSNMQRAFNLKEEMLTNKSIDCRPSNETLEYIKGEQHDRWDS 65
Query: 163 HTSELEKKAKLNTSCEK 179
T + ++ K
Sbjct: 66 KTKTVLDSSRDTGRGVK 82
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 30.2 bits (67), Expect = 2.1
Identities = 28/188 (14%), Positives = 65/188 (34%), Gaps = 7/188 (3%)
Query: 269 RQQQLEQAHSMLLRHHEKT----QELEYRQQKSVHSLREDQVTRQHQTELTNQEDYMHRS 324
+QQ LEQ + + + + +E Q + + + ++ +L + R
Sbjct: 14 KQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLK-SQGDMQDLNGNNQSVTRQ 72
Query: 325 EQELKKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELEILMAYQSKNKMQAEAQQ 384
+ + ++ L Q +S+ L + K EL Q +
Sbjct: 73 KMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPPNI 132
Query: 385 LEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQERELESFDQESNRMGFRYRQIL 444
DR+ L + +T+Q + + +E + + + + ++ R+ + L
Sbjct: 133 CLDRLENWITSLAESQL-QTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERI-VELFRNL 190
Query: 445 VSSQSRVE 452
+ S VE
Sbjct: 191 MKSAFVVE 198
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 29.9 bits (67), Expect = 2.2
Identities = 27/152 (17%), Positives = 62/152 (40%), Gaps = 14/152 (9%)
Query: 319 DYMHRSEQELKKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELEILMAYQSKNKM 378
D + E+ ++ K EL+ + ++ +RL + ++ KE+ ELE + Y N
Sbjct: 86 DPLSPGERGIQAKLK-ELEDEQRNELVRLKYNDKI-----KEKFGKELEEV--YNFMNGE 137
Query: 379 QAEAQQLEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQERELESFDQESNRMGF 438
+ E + + + + L E ++R L ++E+ M
Sbjct: 138 ANAEIEDEKQFDILNKAVT-----SYNKILTEEDLQMRRLATALQKEIGERTHAETVMVK 192
Query: 439 RYRQILVSSQSRVELEDRVSVRRALLEQKMDM 470
YR + + ++ +E+E R ++ +++ M
Sbjct: 193 EYRDKIDALKNAIEVE-RDGMQEEAIQEIAGM 223
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 218
Score = 29.5 bits (67), Expect = 2.4
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 382 AQQLEDRVSVRRALLEQKMDME 403
A QL+ RVS R+A K +E
Sbjct: 132 AGQLKSRVSFRKA---MKKAIE 150
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 2wwl_C 3oar_C
3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C
4a2i_C
Length = 206
Score = 28.6 bits (65), Expect = 3.8
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 382 AQQLEDRVSVRRALLEQKMDMETQQFLG 409
QLE RV RRA K ++ LG
Sbjct: 120 TSQLERRVMFRRA---MKRAVQNAMRLG 144
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 29.2 bits (64), Expect = 4.3
Identities = 34/244 (13%), Positives = 91/244 (37%), Gaps = 11/244 (4%)
Query: 264 KELNKRQQQLEQAHSMLLRHHEKTQELEYRQQKSVHSLREDQVTRQHQTELTNQ--EDYM 321
+++ ++ Q ++ LL H ++ D + ++ + +D+
Sbjct: 337 QQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFC 396
Query: 322 HRSEQELKKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELEILMAYQSKNKMQAE 381
++++ + + L+ L+ + + + + ++ Y + + +
Sbjct: 397 KQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQ 456
Query: 382 AQQLEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQERELESFDQESNRMGFRYR 441
A+++ + + + ++T Q L E+++ I + + E S +
Sbjct: 457 AEEILQTYLKSKESMTDAI-LQTDQTLTEKEKEIEVERVKAESAQASAKML-------HE 508
Query: 442 QILVSSQSRVELEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQEREL-ESFDQE 500
+ Q + E L +KM+ + Q L E++ + L + QE+ L E F +E
Sbjct: 509 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKE 568
Query: 501 SNRM 504
S M
Sbjct: 569 SRIM 572
Score = 28.4 bits (62), Expect = 8.2
Identities = 26/178 (14%), Positives = 63/178 (35%), Gaps = 7/178 (3%)
Query: 260 QRAGKELNKRQQQLEQAHSMLLRHHEKTQELEYRQQKSVHSLREDQVTRQHQTELTNQED 319
+ + + Q + ++ ++ YR + + + + + +E
Sbjct: 401 EASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEI 460
Query: 320 YMHRSEQELKKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELEILMAYQSKNKMQ 379
+ + A+ Q + K + E + V+ + E+ + + +
Sbjct: 461 LQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK 520
Query: 380 AEAQQLEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQEREL-ESFDQESNRM 436
+ Q + L +KM+ + Q L E++ + L + QE+ L E F +ES M
Sbjct: 521 ERSYQEHLK------QLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIM 572
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 28.5 bits (64), Expect = 5.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 16 SGAGGGSNNVGGGGGGG 32
S GGG + GG GGGG
Sbjct: 141 SSRGGGGSGGGGSGGGG 157
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C
3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C
3or9_C 3ora_C 3sfs_C* 3uoq_C* 2qal_C* 1p6g_C 1p87_C
2aw7_C ...
Length = 233
Score = 28.0 bits (63), Expect = 6.8
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 382 AQQLEDRVSVRRALLEQKMDMETQQFLG 409
QLE RV RRA K ++ LG
Sbjct: 121 TSQLERRVMFRRA---MKRAVQNAMRLG 145
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 28.7 bits (63), Expect = 6.9
Identities = 33/198 (16%), Positives = 68/198 (34%), Gaps = 14/198 (7%)
Query: 259 RQRAGKELNKRQQQLEQAHSMLLRHHEKTQELEYRQQKSVHSLREDQVTRQHQTELTNQE 318
R+ ++ + E + L+ +++ E + RQQ + + Q Q T
Sbjct: 75 RKEVVHKIIELLNVTELTQNALI--NDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVA 132
Query: 319 DYMHRSEQELKKKHALELKQQPKSLKIRLDESQEVECHHLKERLHYELEILMAYQSKNKM 378
+ + + Q+LKK L++ + D + K+ L L ++
Sbjct: 133 ESLQQVRQQLKK-----LEELEQKYTYEHDPITK-----NKQVLWDRTFSLFQQLIQSSF 182
Query: 379 QAEAQQLEDRVSVR-RALLEQKMDMETQQFLGERQERIRLLHERQERELESFDQESNRMG 437
E Q R L + L + QE L + + + ++ + G
Sbjct: 183 VVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKVKVLFDKDV-NERNTVKG 241
Query: 438 FRYRQILVSSQSRVELED 455
FR IL + + +E+
Sbjct: 242 FRKFNILGTHTKVMNMEE 259
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C*
1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F*
1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C
1xmo_C* 1xmq_C* 1xnq_C* ...
Length = 239
Score = 28.0 bits (63), Expect = 8.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 382 AQQLEDRVSVRRA 394
A+Q+E R +VRRA
Sbjct: 121 AEQIERRFAVRRA 133
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.9 bits (61), Expect = 9.6
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 109 MSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELE 168
++ + RREH A + K+E EM+Q + KE L+ EL++ + LE
Sbjct: 317 LAQMEEERREHVAKMKKMEM----EMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLE 372
Query: 169 KKAKLNTSCEKKLTKEIIARQDCDRKVFEAAKKKEYKASKERWK 212
+ K ++ E + R + + + + +K++ K
Sbjct: 373 AQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.125 0.338
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,874,432
Number of extensions: 469271
Number of successful extensions: 1561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1404
Number of HSP's successfully gapped: 234
Length of query: 547
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 449
Effective length of database: 3,965,535
Effective search space: 1780525215
Effective search space used: 1780525215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.3 bits)