RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17955
         (547 letters)



>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious
           bursal disease virus [TaxId: 10995]}
          Length = 774

 Score = 34.2 bits (78), Expect = 0.039
 Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 5/136 (3%)

Query: 149 LQQFSRELEKLTLKHTSELEKKAKLNTSCEKKLTKEIIAR---QDCDRKVFEAAKKKEYK 205
           L +F    E   +K T   E  A+LN     K     + R       + V  A K   Y+
Sbjct: 639 LSEFGEAFEGFNIKLTVTSESLAELNKPVPPK--PPNVNRPVNTGGLKAVSNALKTGRYR 696

Query: 206 ASKERWKRELSQDERRRAAGPSESIASSLTQGATEASRGRPDEARLCADRKIIRQRAGKE 265
                    L    R R     ++ A +     ++      D          + ++A   
Sbjct: 697 NEAGLSGLVLLATARSRLQDAVKAKAEAEKLHKSKPDDPDADWFERSETLSDLLEKADIA 756

Query: 266 LNKRQQQLEQAHSMLL 281
                  L +    L 
Sbjct: 757 SKVAHSALVETSDALE 772


>d1wcha_ c.45.1.2 (A:) Tyrosine-protein phosphatase, non-receptor
           type 13 (PTPL1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 308

 Score = 27.9 bits (61), Expect = 3.0
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 365 ELEILMAYQSKNKMQAEAQQLEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQER 424
           EL +L   +     +     L+  + V R LL+Q +  +         E   L   +   
Sbjct: 8   ELAVLPVVKVLPSGKYTGANLKSVIRVLRGLLDQGIPSK---------ELENLQELKPLD 58

Query: 425 ELESFDQESNRMGFRYRQILVSSQSRVELED 455
           +      + NR   RY+ IL    +RV L D
Sbjct: 59  QCLIGQTKENRRKNRYKNILPYDATRVPLGD 89


>d3bl2a1 f.1.4.1 (A:6-134) Bcl-2 homolog V-bcl-2 {Murid herpesvirus
           4 [TaxId: 33708]}
          Length = 129

 Score = 26.9 bits (59), Expect = 3.7
 Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 161 LKHTSELEKKAKLNTSCEKKLTKEIIARQDCDRKVFEAAKKKEYKASKERWKRELSQ 217
           LK  S++E+   ++++    ++K I   Q+  R+ +++  + +Y  + + WKR+LS+
Sbjct: 13  LKTVSKVEELDCVDSAVLVDVSKIITLTQEF-RRHYDSVYRADYGPALKNWKRDLSK 68


>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
           PAC) {Streptococcus mutans [TaxId: 1309]}
          Length = 377

 Score = 27.7 bits (61), Expect = 4.3
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 84  AKKKEYKASKERWKRELSQEEMHEQMSGY 112
            K K Y+  +   K  L++ E H+   G 
Sbjct: 9   VKLKAYEDEQASIKAALAELEKHKNEDGN 37


>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo
           sapiens), shp-2 [TaxId: 9606]}
          Length = 307

 Score = 26.7 bits (58), Expect = 8.3
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 381 EAQQLEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQERELESFDQESNRMGFRY 440
            A ++E RV     L E    ++      E  E ++    +     +   ++ N+   RY
Sbjct: 4   NAAEIESRVRELSKLAETTDKVKQG--FWEEFETLQQQECKLLYSRKEGQRQENKNKNRY 61

Query: 441 RQILVSSQSRVELED 455
           + IL    +RV L D
Sbjct: 62  KNILPFDHTRVVLHD 76


>d2qalc2 d.53.1.1 (C:106-206) Ribosomal protein S3 C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 101

 Score = 25.2 bits (55), Expect = 8.6
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 382 AQQLEDRVSVRRAL---LEQKMDMETQQFLGERQERIR 416
             QLE RV  RRA+   ++  M +  +    E   R+ 
Sbjct: 15  TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLG 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.125    0.338 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,860,638
Number of extensions: 86790
Number of successful extensions: 410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 81
Length of query: 547
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 457
Effective length of database: 1,171,896
Effective search space: 535556472
Effective search space used: 535556472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.4 bits)